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Accepted for/Published in: JMIR Public Health and Surveillance

Date Submitted: Sep 14, 2021
Open Peer Review Period: Sep 14, 2021 - Sep 28, 2021
Date Accepted: Oct 5, 2021
Date Submitted to PubMed: Nov 23, 2021
(closed for review but you can still tweet)

The final, peer-reviewed published version of this preprint can be found here:

Digital SARS-CoV-2 Detection Among Hospital Employees: Participatory Surveillance Study

Leal-Neto O, Egger T, Schlegel M, Flury D, Sumer J, Albrich W, Babouee Flury B, Kuster S, Vernazza P, Kahlert C, Kohler P

Digital SARS-CoV-2 Detection Among Hospital Employees: Participatory Surveillance Study

JMIR Public Health Surveill 2021;7(11):e33576

DOI: 10.2196/33576

PMID: 34727046

PMCID: 8610449

Digital SARS-CoV-2 Detection Among Hospital Employees: Participatory Surveillance Study

  • Onicio Leal-Neto; 
  • Thomas Egger; 
  • Matthias Schlegel; 
  • Domenica Flury; 
  • Johannes Sumer; 
  • Werner Albrich; 
  • Baharak Babouee Flury; 
  • Stefan Kuster; 
  • Pietro Vernazza; 
  • Christian Kahlert; 
  • Philipp Kohler

Background:

The implementation of novel techniques as a complement to traditional disease surveillance systems represents an additional opportunity for rapid analysis.

Objective:

The objective of this work is to describe a web-based participatory surveillance strategy among health care workers (HCWs) in two Swiss hospitals during the first wave of COVID-19.

Methods:

A prospective cohort of HCWs was recruited in March 2020 at the Cantonal Hospital of St. Gallen and the Eastern Switzerland Children’s Hospital. For data analysis, we used a combination of the following techniques: locally estimated scatterplot smoothing (LOESS) regression, Spearman correlation, anomaly detection, and random forest.

Results:

From March 23 to August 23, 2020, a total of 127,684 SMS text messages were sent, generating 90,414 valid reports among 1004 participants, achieving a weekly average of 4.5 (SD 1.9) reports per user. The symptom showing the strongest correlation with a positive polymerase chain reaction test result was loss of taste. Symptoms like red eyes or a runny nose were negatively associated with a positive test. The area under the receiver operating characteristic curve showed favorable performance of the classification tree, with an accuracy of 88% for the training data and 89% for the test data. Nevertheless, while the prediction matrix showed good specificity (80.0%), sensitivity was low (10.6%).

Conclusions:

Loss of taste was the symptom that was most aligned with COVID-19 activity at the population level. At the individual level—using machine learning–based random forest classification—reporting loss of taste and limb/muscle pain as well as the absence of runny nose and red eyes were the best predictors of COVID-19.


 Citation

Please cite as:

Leal-Neto O, Egger T, Schlegel M, Flury D, Sumer J, Albrich W, Babouee Flury B, Kuster S, Vernazza P, Kahlert C, Kohler P

Digital SARS-CoV-2 Detection Among Hospital Employees: Participatory Surveillance Study

JMIR Public Health Surveill 2021;7(11):e33576

DOI: 10.2196/33576

PMID: 34727046

PMCID: 8610449

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© The authors. All rights reserved. This is a privileged document currently under peer-review/community review (or an accepted/rejected manuscript). Authors have provided JMIR Publications with an exclusive license to publish this preprint on it's website for review and ahead-of-print citation purposes only. While the final peer-reviewed paper may be licensed under a cc-by license on publication, at this stage authors and publisher expressively prohibit redistribution of this draft paper other than for review purposes.

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