Biological and Clinical Significance of Adaptive Evolution of Coronaviruses
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Acknowledgments
Conflicts of Interest
References
- Holland, J.; Spindler, K.; Horodyski, F.; Grabau, E.; Nichol, S.; VandePol, S. Rapid evolution of RNA genomes. Science 1982, 215, 1577–1585. [Google Scholar] [CrossRef] [PubMed]
- Duffy, S.; Shackelton, L.A.; Holmes, E.C. Rates of evolutionary change in viruses: Patterns and determinants. Nat. Rev. Genet. 2008, 9, 267–276. [Google Scholar] [CrossRef]
- Domingo, E.; Holland, J.J. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 1997, 51, 151–178. [Google Scholar] [CrossRef] [PubMed]
- Belshaw, R.; Pybus, O.G.; Rambaut, A. The evolution of genome compression and genomic novelty in RNA viruses. Genome Res. 2007, 17, 1496–1504. [Google Scholar] [CrossRef] [Green Version]
- Minskaia, E.; Hertzig, T.; Gorbalenya, A.E.; Campanacci, V.; Cambillau, C.; Canard, B.; Ziebuhr, J. Discovery of an RNA virus 3′->5′ exoribonuclease that is critically involved in coronavirus RNA synthesis. Proc. Natl. Acad. Sci. USA 2006, 103, 5108–5113. [Google Scholar] [CrossRef] [Green Version]
- Baric, R.S.; Fu, K.; Schaad, M.C.; Stohlman, S.A. Establishing a genetic recombination map for murine coronavirus strain A59 complementation groups. Virology 1990, 177, 646–656. [Google Scholar] [CrossRef]
- Forni, D.; Cagliani, R.; Clerici, M.; Sironi, M. Molecular Evolution of Human Coronavirus Genomes. Trends Microbiol. 2017, 25, 35–48. [Google Scholar] [CrossRef] [Green Version]
- Vasilarou, M.; Alachiotis, N.; Garefalaki, J.; Beloukas, A.; Pavlidis, P. Population Genomics Insights into the First Wave of COVID-19. Life 2021, 11, 129. [Google Scholar] [CrossRef] [PubMed]
- Hon, C.C.; Lam, T.Y.; Shi, Z.L.; Drummond, A.J.; Yip, C.W.; Zeng, F.; Lam, P.Y.; Leung, F.C. Evidence of the recombinant origin of a bat severe acute respiratory syndrome (SARS)-like coronavirus and its implications on the direct ancestor of SARS coronavirus. J. Virol. 2008, 82, 1819–1826. [Google Scholar] [CrossRef] [Green Version]
- Li, X.; Giorgi, E.E.; Marichannegowda, M.H.; Foley, B.; Xiao, C.; Kong, X.P.; Chen, Y.; Gnanakaran, S.; Korber, B.; Gao, F. Emergence of SARS-CoV-2 through recombination and strong purifying selection. Sci. Adv. 2020, 6, eabb9153. [Google Scholar] [CrossRef]
- Sabir, J.S.; Lam, T.T.; Ahmed, M.M.; Li, L.; Shen, Y.; Abo-Aba, S.E.; Qureshi, M.I.; Abu-Zeid, M.; Zhang, Y.; Khiyami, M.A.; et al. Co-circulation of three camel coronavirus species and recombination of MERS-CoVs in Saudi Arabia. Science 2016, 351, 81–84. [Google Scholar] [CrossRef] [Green Version]
- Bonilauri, P.; Rugna, G. Animal Coronaviruses and SARS-COV-2 in Animals, What Do We Actually Know? Life 2021, 11, 123. [Google Scholar] [CrossRef] [PubMed]
- Scarpa, F.; Sanna, D.; Azzena, I.; Cossu, P.; Giovanetti, M.; Benvenuto, D.; Coradduzza, E.; Alexiev, I.; Casu, M.; Fiori, P.L.; et al. Update on the Phylodynamics of SADS-CoV. Life 2021, 11, 820. [Google Scholar] [CrossRef] [PubMed]
- Lau, S.K.; Woo, P.C.; Li, K.S.; Huang, Y.; Tsoi, H.W.; Wong, B.H.; Wong, S.S.; Leung, S.Y.; Chan, K.H.; Yuen, K.Y. Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. Proc. Natl. Acad. Sci. USA 2005, 102, 14040–14045. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Song, H.D.; Tu, C.C.; Zhang, G.W.; Wang, S.Y.; Zheng, K.; Lei, L.C.; Chen, Q.X.; Gao, Y.W.; Zhou, H.Q.; Xiang, H.; et al. Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc. Natl. Acad. Sci. USA 2005, 102, 2430–2435. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Reusken, C.B.; Raj, V.S.; Koopmans, M.P.; Haagmans, B.L. Cross host transmission in the emergence of MERS coronavirus. Curr. Opin. Virol. 2016, 16, 55–62. [Google Scholar] [CrossRef] [Green Version]
- Mandilara, G.; Koutsi, M.A.; Agelopoulos, M.; Sourvinos, G.; Beloukas, A.; Rampias, T. The Role of Coronavirus RNA-Processing Enzymes in Innate Immune Evasion. Life 2021, 11, 571. [Google Scholar] [CrossRef] [PubMed]
- Lee, S.; Lee, Y.S.; Choi, Y.; Son, A.; Park, Y.; Lee, K.M.; Kim, J.; Kim, J.S.; Kim, V.N. The SARS-CoV-2 RNA interactome. Mol. Cell 2021, 81, 2838–2850. [Google Scholar] [CrossRef] [PubMed]
- Nagy, P.D.; Pogany, J. The dependence of viral RNA replication on co-opted host factors. Nat. Rev. Microbiol. 2011, 10, 137–149. [Google Scholar] [CrossRef] [PubMed]
- Gordon, D.E.; Jang, G.M.; Bouhaddou, M.; Xu, J.; Obernier, K.; White, K.M.; O’Meara, M.J.; Rezelj, V.V.; Guo, J.Z.; Swaney, D.L.; et al. A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature 2020, 583, 459–468. [Google Scholar] [CrossRef] [PubMed]
- Gioti, K.; Kottaridi, C.; Voyiatzaki, C.; Chaniotis, D.; Rampias, T.; Beloukas, A. Animal Coronaviruses Induced Apoptosis. Life 2021, 11, 185. [Google Scholar] [CrossRef] [PubMed]
- Surleac, M.; Banica, L.; Casangiu, C.; Cotic, M.; Florea, D.; Sandulescu, O.; Milu, P.; Streinu-Cercel, A.; Vlaicu, O.; Paraskevis, D.; et al. Molecular Epidemiology Analysis of SARS-CoV-2 Strains Circulating in Romania during the First Months of the Pandemic. Life 2020, 10, 152. [Google Scholar] [CrossRef] [PubMed]
- Kostaki, E.G.; Tseti, I.; Tsiodras, S.; Pavlakis, G.N.; Sfikakis, P.P.; Paraskevis, D. Temporal Dominance of B.1.1.7 over B.1.354 SARS-CoV-2 Variant: A Hypothesis Based on Areas of Variant Co-Circulation. Life 2021, 11, 375. [Google Scholar] [CrossRef] [PubMed]
- Bousali, M.; Dimadi, A.; Kostaki, E.G.; Tsiodras, S.; Nikolopoulos, G.K.; Sgouras, D.N.; Magiorkinis, G.; Papatheodoridis, G.; Pogka, V.; Lourida, G.; et al. SARS-CoV-2 Molecular Transmission Clusters and Containment Measures in Ten European Regions during the First Pandemic Wave. Life 2021, 11, 219. [Google Scholar] [CrossRef]
- Mathioudakis, A.G.; Fally, M.; Hashad, R.; Knight, S.; Felton, T.; Vestbo, J. COVID-19 Clinical Trials: Unraveling a Methodological Gordian Knot. Am. J. Respir. Crit. Care Med. 2020, 202, 635–637. [Google Scholar] [CrossRef]
- Mathioudakis, A.G.; Fally, M.; Hashad, R.; Kouta, A.; Hadi, A.S.; Knight, S.B.; Bakerly, N.D.; Singh, D.; Williamson, P.R.; Felton, T.; et al. Outcomes Evaluated in Controlled Clinical Trials on the Management of COVID-19: A Methodological Systematic Review. Life 2020, 10, 350. [Google Scholar] [CrossRef]
- Ulinici, M.; Covantev, S.; Wingfield-Digby, J.; Beloukas, A.; Mathioudakis, A.G.; Corlateanu, A. Screening, Diagnostic and Prognostic Tests for COVID-19: A Comprehensive Review. Life 2021, 11, 561. [Google Scholar] [CrossRef]
- Tsitsilonis, O.E.; Paraskevis, D.; Lianidou, E.; Pierros, V.; Akalestos, A.; Kastritis, E.; Moutsatsou, P.; Scorilas, A.; Sphicopoulos, T.; Terpos, E.; et al. Seroprevalence of Antibodies against SARS-CoV-2 among the Personnel and Students of the National and Kapodistrian University of Athens, Greece: A Preliminary Report. Life 2020, 10, 214. [Google Scholar] [CrossRef]
- Mathioudakis, A.G.; Ghrew, M.; Ustianowski, A.; Ahmad, S.; Borrow, R.; Papavasileiou, L.P.; Petrakis, D.; Bakerly, N.D. Self-Reported Real-World Safety and Reactogenicity of COVID-19 Vaccines: A Vaccine Recipient Survey. Life 2021, 11, 249. [Google Scholar] [CrossRef]
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations. |
© 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Beloukas, A.; Rampias, T. Biological and Clinical Significance of Adaptive Evolution of Coronaviruses. Life 2021, 11, 1129. https://doi.org/10.3390/life11111129
Beloukas A, Rampias T. Biological and Clinical Significance of Adaptive Evolution of Coronaviruses. Life. 2021; 11(11):1129. https://doi.org/10.3390/life11111129
Chicago/Turabian StyleBeloukas, Apostolos, and Theodoros Rampias. 2021. "Biological and Clinical Significance of Adaptive Evolution of Coronaviruses" Life 11, no. 11: 1129. https://doi.org/10.3390/life11111129