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New Discovery of Covid-19 Natural-Based Potential Antivirus Herbal Supplement Products from Pinang Yaki (Areca vestiaria) Extract: A Preliminary Study by Untargeted Metabolomic Profiling

[version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Previously titled: New Discovery of Covid-19 Natural-Based Antivirus Herbal Supplement Products from Pinang Yaki (Areca vestiaria) Extract by Untargeted Metabolomic Profiling
PUBLISHED 14 Feb 2022
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This article is included in the Plant Science gateway.

Abstract

Background: Pinang yaki has bioactive compounds that have potential as a new herbal supplement. A better understanding of the bioactive compounds of pinang yaki using untargeted metabolomic profiling studies will provide clearer insight into the health benefits of pinang yaki and in particular its potential for the therapy and prevention of Covid-19.  
Methods: Fresh samples of pinang yaki (Areca vestiaria) are obtained from forests in North Sulawesi Province, Indonesia. Samples were used for untargeted metabolomics analysis by UPLC-MS.  
Results: Based on an untargeted metabolomic profiling study of pinang yaki, 2504 compounds in ESI- and 2645 compounds in ESI+ were successfully obtained. After the analysis, 356 compounds in ESI- and 543 compounds in ESI+ were identified successfully. Major compounds Alpha-Chlorohydrin (PubChem ID: 7290) and Tagatose (PubChem ID: 439312) were found in ESI+ and ESI-.  
Discussion: The Top 10 metabolites from pinang yaki extract (ESI+) juga have been indicated in preventing SARS Cov2 infection and have exhibited good neuroprotective immunity. Benzothiazole (PubChem ID: 7222), L-isoleucine (PubChem ID: 6306), D-glucono-delta-lactone (PubChem ID: 736), Diethylpyrocarbonate (PubChem ID: 3051), Bis(2-Ethylhexyl) amine (PubChem ID: 7791), Cinnamic acid (PubChem ID: 444539), and Trigonelline (PubChem ID: 5570) also had potential effects as an antiviral, anti-inflammatory, and anti-Covid19.
Conclusion: Untargeted metabolomic profiling showed many bioactive compounds contained in pinang yaki (Areca vestiaria) extract. The top 10 compounds have been identified and explored for their potential benefits as anti-Covid19 supplement products. This is a preliminary study which still needs further research such as preclinical and clinical trials.

Keywords

Mass spectrometry-based metabolomics, natural-based antivirus, pinang yaki, Areca vestiaria, SARS-CoV-2, medicinal plants, functional food

Revised Amendments from Version 1

This article was revised according to reviews from reviewers which included changes to:
1. Title changed to: New Discovery of Covid-19 Natural-Based Potential Antivirus Herbal Supplement Products from Pinang Yaki (Areca vestiaria) Extract: A Preliminary Study by Untargeted Metabolomic Profiling
2. Adding a sentence to the abstract conclusion: This is a preliminary study which still needs further research such as preclinical and clinical trials.
3. Adding the details of the method of providing samples.
4. A little grammar refinement.

To read any peer review reports and author responses for this article, follow the "read" links in the Open Peer Review table.

Introduction

Coronavirus disease 19 (COVID-19) is a highly communicable and deadly virus caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that first appeared in Wuhan, China in December 2019 and has since spread around the world (Mouffouk et al., 2021). The SARS-CoV-2 virus is a β-coronavirus, a non-segmented enveloped positive-sense RNA virus with a crown-like appearance and symmetric helical nucleocapsid (Astuti & Ysrafil, 2020). Unlike the previous outbreaks of coronavirus, SARS-CoV-2 is more transmittable and the majority of those infected remain asymptomatic, resulting in ineffective containment and mitigation (Andersen et al., 2020). It has become a major cause of mortality and morbidity worldwide (Das et al., 2021). Therefore, finding an optimal therapeutical solution is vital.

Medicinal plants and natural products can be promising alternatives to supplements or drugs to treat and prevent diseases (Benarba & Pandiella, 2020). Pinang yaki (Areca vestiaria), also known as crown shaft palm, is an endemic palm plant that grows in North Sulawesi that is traditionally utilized for the treatment of diabetes and diarrhoea, and as a contraceptive (Gosal et al., 2017; Herny et al., 2010). Pinang yaki fruit extract has bioactive compounds such as flavonoids, tannins, saponins, triterpenoids, and hydroquinones, which are known primarily as natural antioxidants (Simbala et al., 2017). Tannins and flavonoids are known for their antitumor, antiallergic, antihepatotoxic, and antioxidant activities (Londok et al., 2017), while triterpenoids exert antibacterial, anticancer, anti-inflammation, and wound care properties (Herny et al., 2010), as well as inhibiting viral replication (Das et al., 2021). Saponins also show antifungal, cytotoxic, antibacterial, and antiviral properties (Kregiel et al., 2017). A recent review also stated that flavonoids may inhibit viral replication and translation (Ahmad et al., 2015), enhance immune activity, antiviral protection, and reduce respiratory problems (Yang et al., 2020); since phenols inhibit the fusion of the virus to the host cell (Das et al., 2021).

Despite all those health-beneficial properties, pinang yaki is still underutilized. Pinang yaki and its bioactive compounds have the potential as a novel herbal supplement. A better understanding of pinang yaki’s bioactive compounds using an untargeted metabolomic profiling study will provide clearer insight into the health benefits of pinang yaki, in particular its potential for therapy and prevention of Covid-19.

Methods

Fresh samples of pinang yaki (Areca vestiaria) fruit with the age of 3.5 months were obtained from Bolaang Mongondow forest in North Sulawesi Province, Indonesia. The samples were then cleaned using distilled water (Aquades) and then stored in a cooling box to be sent to the intended metabolomic testing laboratory. Samples were used for untargeted metabolomics analysis by UPLC-MS. The botanical identification and authentication were confirmed at the Department of Pharmacology, Faculty of Mathematics and Natural Sciences, Sam Ratulangi University, Indonesia. Untargeted metabolomics analysis and identification of compounds were conducted at Apical Scientific Sdn. Bhd. 43300 Seri Kembangan laboratory, Selangor, Malaysia with registration number #CPMO08102001a.

Instruments and reagents

Ultimate 3000LC combined with Q Exactive MS (Thermo Fisher), Temp functional Centrifugation (Eppendorf), ACQUITY UPLC HSS T3 (100 × 2.1 mm × 1.8 μm), Acetonitrile (Merck), Methanol (Merck), Formic acid (CNW).

Sample preparation

Samples were thawed, and 50 mg of each sample was precisely weighed into a tube, add with 800 μL of 80% methanol with vortex for 90 s, and followed by sonication for 30 min, 4 °C. Then all samples were kept at −40 °C for 1 h. After that, samples were vortexed for 30 s, kept for 0.5 h, and centrifuged at 12000 rpm and 4 °C for 15 mins. Finally, 200 μL of supernatant was transferred to a vial for LC-MS analysis.

Liquid chromatography-mass spectrometry (LC-MS)

Performed by Ultimate 3000LC combined with Q Exactive MS (Thermo Fisher) and screened with electrospray ionization-mass spectrometry (ESI-MS). The LC system is comprised of an ACQUITY UPLC HSS T3 (100 × 2.1 mm, 1.8 μm) with Ultimate 3000LC. The mobile phase is composed of solvent A (0.05% formic acid-water) and solvent B (acetonitrile) with a gradient elution (0-1.0 min, 95% A; 1.0-12.0 min, 95-5% A; 12.0-13.5 min, 5% A; 13.5-13.6 min, 5-95% A; 13.6-16.0 min, 95% A). The flow rate of the mobile phase is 0.3 mL·min−1. The column temperature is maintained at 40 °C, and the sample manager temperature is set at 4 °C.

Mass spectrometry parameters in positive ion mode (ESI+) and negative ion mode (ESI−) mode are listed as follows:

  • ESI+: Heater Temp 300 °C; Sheath Gas Flow rate, 45arb; Aux Gas Flow Rate, 15arb; Sweep Gas Flow Rate, 1arb; spray voltage, 3.0 KV; Capillary Temp, 350 °C; S -Lens RF Level, 30%.

  • ESI−: Heater Temp 300 °C, Sheath Gas Flow rate, 45arb; Aux Gas Flow Rate, 15arb; Sweep Gas Flow Rate, 1arb; spray voltage, 3.2 KV; Capillary Temp, 350 °C; S -Lens RF Level, 60%.

Results

Graphs shown in Figures 1 and 2 were used to determine the peak representing the number of annotated ions, retention time, and relative abundance of the ions. This data was then used to identify the compounds contained in the sample extract. The results of identification and mass of compounds were carried out by the laboratory of Apical Scientific Sdn. Bhd and the results provided in an Excel spreadsheet (Microsoft Excel, RRID:SCR_016137) (see data availibity statement) (Nurkolis & Simbala, 2021). Based on an untargeted metabolomic profiling study of pinang yaki, 2504 compounds in ESI− and 2645 compounds in ESI+ were successfully obtained (Nurkolis & Simbala, 2021). After the analysis, 356 compounds in ESI− and 543 compounds in ESI+ were identified successfully (Nurkolis & Simbala, 2021).

0d79e90d-418a-4445-a7db-faf07b31bbdc_figure1.gif

Figure 1. Total-Ion Current (TIC) was obtained from Pinang Yaki in ESI+ mode.

Based on an untargeted metabolomic profiling study of pinang yaki, 2645 compounds in ESI+ were successfully obtained (Nurkolis & Simbala, 2021). After the analysis, 543 compounds in ESI+ were successfully identified (Nurkolis & Simbala, 2021). Figure 1 shows that the major compound was Alpha-chlorohydrin (PubChem ID: 7290).

0d79e90d-418a-4445-a7db-faf07b31bbdc_figure2.gif

Figure 2. Total-Ion Current (TIC) was obtained from Pinang Yaki in ESI− mode.

In ESI−, a total of 2504 compounds were obtained, and 356 compounds were successfully identified by name (see underlying) (Nurkolis & Simbala, 2021). Figure 2 shows that the identified major compound was tagatose (PubChem ID: 439312).

After 543 compounds in ESI+ were successfully identified, those compounds were ranked into the top 10 metabolites present in pinang yaki extract (ESI+), as is shown in Table 1.

Table 1. Top 10 metabolite from Pinang Yaki (ESI+).

Molecular weight (g/mol)m/zRT (min)NamePeak areaPubChem ID
103.09999104.10730.818Choline24527.6305
135.01414136.02146.321Benzothiazole15776.477222
131.09455132.10181.529L-Isoleucine15164.336306
110.01313111.020414.528Alpha-Chlorohydrin14077.627290
178.04759179.05490.876D-Glucono-Delta-Lactone12736.37736
162.05267163.05990.839Diethylpyrocarbonate10537.283051
241.27652242.28386.909Bis(2-ethylhexyl)amine7771.8877791
148.05225149.05962.442Cinnamic Acid7221.059444539
96.02104138.05480.837Trigonelline6500.9325570
184.00067185.0081.418Chelidonic Acid6135.7527431

In Table 2, the ranking is also shown for ESI−, providing the top 10 highest metabolite compounds. Tables 1 and 2 show that chelidonic acid (PubChem ID: 7431) was present in both top 10 metabolites.

Table 2. Top 10 metabolite from Pinang Yaki (ESI−).

Molecular weight (g/mol)m/zRT (min)NamePeak areaPubChem ID
184.0002182.99241.264Chelidonic Acid97389.497431
196.0573195.050.799Gluconic Acid44676.7410690
192.0261191.01880.901Citric Acid21807.88311
88.0146487.00730.965Pyruvic Acid169834.11060
156.0181155.01040.819Propanediol 1-Phosphate15028.76440156
134.0201133.01291.166D-(+)-Malic Acid14024.6792824
166.9852165.97796.6592-Mercaptobenzothiazole10616.37697993
116.0096115.00230.975Maleic Acid10462.28444266
273.966272.95870.6981-O-Arsonopentofuranose9882.36225201247
180.0624179.0550.885Tagatose7052.94439312

Discussion

The richness of Indonesia's natural ingredients and their active compounds still needs to be revealed and explored, in connection with the discoveries of new natural-based drug candidates. This untargeted metabolomic profiling study was conducted to clarify the content of compounds contained in pinang yaki (Areca vestiaria) and to see its potential as a Covid-19 herbal remedy. But of course, this study is a basic study that does not necessarily represent efficacy in animals (preclinical studies) and clinical trials in humans. However, the content of compounds that have been successfully identified in this study can be used as a basic reference in determining the dose of trials in animals (preclinical study).

Tables 1 and 2 show that chelidonic acid (PubChem ID: 7431) is in the top 10 metabolites using either ESI technique. A study conducted by Shin et al (2011), showed the inhibitory effects of chelidonic acid on IL-6 production by blocking NF-κB and caspase-1 in HMC-1 cells that can be a potential therapy for inflammatory diseases, including Covid-19 (Shin et al., 2011; Zhang et al., 2020). In addition, Tagatose (PubChem ID: 439312) which occupies the highest peak of ESI− mode (Figure 2), indicates that its presence in pinang Yaki (Areca vestiaria) is also quite high. Studies have shown that it can be a functional antidiabetic food for diabetes, which according to meta-analysis, is comorbid for Covid-19 patients (Guerrero-Wyss et al., 2018; Kun’ain et al., 2020). Alpha-chlorohydrin, also topped the highest position in ESI+ mode (Figure 1), which has a potential immunostaining effect in people with declining viral infections such as SARS Cov-2 (Soliman et al., 2014). However, there are negative effects of the use of Alpha-chlorohydrin on epididymis rats, therefore a comprehensive follow-up study is needed to look at the beneficial effects as well as their toxicity (Soliman et al., 2014).

In addition, choline (PubChem ID: 305) which is the Top 10 Metabolite from pinang yaki extract (ESI+) has also been widely researched for its effects in preventing SARS Cov-2 Infection and has good neuroprotective immunity (Chowdhury & Pathak., 2020). Other contents in pinang yaki (Areca vestiaria) such as Benzothiazole (PubChem ID: 7222) (Ali & Siddiqui., 2013), L-Isoleucine (PubChem ID: 6306) (Mao et al., 2018), D-Glucono-Delta-Lactone (PubChem ID: 736) (Kuwano et al., 2018), Diethylpyrocarbonate (PubChem ID: 3051) (Yamamura & Cochran., 1976), Bis(2-ethylhexyl) amine (PubChem ID: 7791) (Nazemi et al., 2014), Cinnamic acid (PubChem ID: 444539) (Gravina et al., 2011), and Trigonelline (PubChem ID: 5570) (Zhou et al., 2021) also have potential effects as an antiviral, anti-inflammatory, and anti-Covid19 agents.

Additionally, in ESI− mode, some of the highest-grade compounds in pinang yaki extract, such as gluconic acid (PubChem ID: 10690), citric acid (PubChem ID: 311), pyruvic acid (PubChem ID: 1060), propaediol 1-phosphate (PubChem ID: 440156), D-(+)-malic acid (PubChem ID: 92824), 2-mercaptobenzothiazole (PubChem ID: 697993), maleic acid (PubChem ID: 444266), and 1-O-arsonopentofuranose (PubChem ID: 25201247) have anti-inflammatory and antiviral effects.

The above compounds have been identified as contained in pinang yaki extract, which shows its potential as a Covid-19 antiviral herbal supplement product. Of course, it needs further study, researchers will conduct an in vivo or preclinical study to find out the effect of pinang yaki extract as an antiviral herbal supplement Covid-19 (based on the results of the compounds or metabolomic profiling in this paper).

Conclusion

This untargeted metabolomic profiling study shows many bioactive compounds are contained in pinang yaki (Areca vestiaria) extract. The top 10 compounds and their potential benefits as anti-Covid19 supplement products have been identified and explored.

Conflict of interest

Herni Emma Inonta Simbala, Fahrul Nurkolis, Nelly Mayulu, Linda Wilhelma Ancella Rotty confirming and declaring that all these authors have no conflict of interest.

Data availability

Underlying data

Figshare: Pinang Yaki (Areca vestiaria) Extract by Untargeted Metabolomic Profiling. https://doi.org/10.6084/m9.figshare.16560276.v1 (Nurkolis & Simbala, 2021).

The project contains the following underlying data:

  • Raw Data for Untargeted Metabolomic Profiling of Pinang Yaki (Areca vestiaria) Extract ESI+ and ESI−.

Data are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).

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Simbala HEI, Nurkolis F, Mayulu N and Rotty LWA. New Discovery of Covid-19 Natural-Based Potential Antivirus Herbal Supplement Products from Pinang Yaki (Areca vestiaria) Extract: A Preliminary Study by Untargeted Metabolomic Profiling [version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved] F1000Research 2022, 10:1021 (https://doi.org/10.12688/f1000research.73758.2)
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ApprovedThe paper is scientifically sound in its current form and only minor, if any, improvements are suggested
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Not approvedFundamental flaws in the paper seriously undermine the findings and conclusions
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Reviewer Report 23 May 2022
Nawaporn Vinayavekhin, Center of Excellence in Natural Products Chemistry, Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, Thailand 
Not Approved
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In this manuscript, the authors identified metabolites in pinang yaki fruit extract using LC-MS and tried to link these metabolites to their anti-COVID19 properties. However, in my opinion, many points need to be improved before this manuscript can be indexed. ... Continue reading
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Vinayavekhin N. Reviewer Report For: New Discovery of Covid-19 Natural-Based Potential Antivirus Herbal Supplement Products from Pinang Yaki (Areca vestiaria) Extract: A Preliminary Study by Untargeted Metabolomic Profiling [version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]. F1000Research 2022, 10:1021 (https://doi.org/10.5256/f1000research.121189.r137719)
NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article.
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Reviewer Report 28 Feb 2022
Toto Sudargo, Department of Nutrition and Health, Faculty of Medicine, Public Health, and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia 
Approved
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Sudargo T. Reviewer Report For: New Discovery of Covid-19 Natural-Based Potential Antivirus Herbal Supplement Products from Pinang Yaki (Areca vestiaria) Extract: A Preliminary Study by Untargeted Metabolomic Profiling [version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]. F1000Research 2022, 10:1021 (https://doi.org/10.5256/f1000research.121189.r123459)
NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article.
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Reviewer Report 31 Jan 2022
Zanariah Hashim, School of Chemical and Energy Engineering, Faculty of Engineering, Universiti Teknologi Malaysia, Skudai, Malaysia 
Approved with Reservations
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  1. Please check the grammar. Specific names require capitalization (for example, department of pharmacology, faculty of mathematics and natural sciences, should be changed to Department of Pharmacology, Faculty of Mathematics and Natural Sciences), whereas compound names do not need
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Hashim Z. Reviewer Report For: New Discovery of Covid-19 Natural-Based Potential Antivirus Herbal Supplement Products from Pinang Yaki (Areca vestiaria) Extract: A Preliminary Study by Untargeted Metabolomic Profiling [version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]. F1000Research 2022, 10:1021 (https://doi.org/10.5256/f1000research.77431.r118669)
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Reviewer Report 29 Oct 2021
Toto Sudargo, Department of Nutrition and Health, Faculty of Medicine, Public Health, and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia 
Approved
VIEWS 21
  1. The discussion should be more expressive. The contribution of this study to the literature should be highlighted.
     
  2. Please ensure the manuscript is proofread and edited as there is a significant number of
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Sudargo T. Reviewer Report For: New Discovery of Covid-19 Natural-Based Potential Antivirus Herbal Supplement Products from Pinang Yaki (Areca vestiaria) Extract: A Preliminary Study by Untargeted Metabolomic Profiling [version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]. F1000Research 2022, 10:1021 (https://doi.org/10.5256/f1000research.77431.r96491)
NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article.

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Alongside their report, reviewers assign a status to the article:
Approved - the paper is scientifically sound in its current form and only minor, if any, improvements are suggested
Approved with reservations - A number of small changes, sometimes more significant revisions are required to address specific details and improve the papers academic merit.
Not approved - fundamental flaws in the paper seriously undermine the findings and conclusions
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