Data and code availability
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This paper analyzes existing, publicly accessible data. The accession numbers are listed in Table S1, which is available from Mendeley Data: 10.17632/mxjt9nhgmj.1.
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Source code for all analyses presented in this manuscript is available at https://github.com/blab/sarscov2-adaptive-evolution. This repository has been archived at Zenodo: 10.5281/zenodo.6126495 and is publicly available as of the date of publication.
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Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.