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Clinical Severity of Omicron SARS-CoV-2 Variant Relative to Delta in British Columbia, Canada: A Retrospective Analysis of Whole Genome Sequenced Cases

26 Pages Posted: 9 Mar 2022

See all articles by Sean Patrick Harrigan

Sean Patrick Harrigan

BC Centre for Disease Control

James Wilton

BC Centre for Disease Control

Mei Chong

BC Centre for Disease Control

Younathan Abdia

BC Centre for Disease Control

Héctor Velásquez García

University of British Columbia (UBC) - School of Population and Public Health

Caren Rose

BC Centre for Disease Control

Marsha Taylor

BC Centre for Disease Control

Sharmistha Mishra

University of Toronto - Department of Medicine

Beate Sander

University of Toronto - Toronto Health Economics and Technology Assessment (THETA)

Linda Hoang

BC Centre for Disease Control

John Tyson

BC Centre for Disease Control

Mel Krajden

BC Centre for Disease Control

Natalie Prystajecky

BC Centre for Disease Control

Naveed Janjua

University of British Columbia (UBC) - School of Population and Public Health

Hind Sbihi

BC Centre for Disease Control

More...

Abstract

Background: In late 2021, the Omicron SARS-CoV-2 variant emerged and rapidly replaced Delta as the dominant variant globally. The increased transmissibility of the variant led to surges in case rates as well as increases in hospitalizations, however, the true severity of the variant remained unclear. We aimed to provide robust estimates of Omicron severity relative to Delta.

Methods: This study was conducted using a retrospective cohort design with data from the British Columbia COVID-19 Cohort – a large provincial surveillance platform with linkage to administrative datasets. To capture the time of co-circulation with Omicron and Delta, December 2021 was chosen as the study period. We included individuals diagnosed with Omicron or Delta infection, as determined by whole genome sequencing (WGS). To assess the severity (hospitalization, ICU admission, length of stay) of Omicron, we conducted adjusted Cox proportional hazard models, weighted by inverse probability of treatment weights (IPTW).

Findings: The cohort was composed of 13,128 individuals (7,729 Omicron and 5,399 Delta). There were 419 COVID-19 hospitalizations, with 118 (22%) among people diagnosed with Omicron (crude rate=1·5% Omicron, 5·6% Delta). In multivariable IPTW analysis, Omicron was associated with a 50% lower risk of hospitalization compared to Delta (aHR=0·50; 95%CI=0·43-0·59), a 73% lower risk of ICU admission (aHR=0·27; 95%CI=0·19-0·38), and a 5 days shorter hospital stay on average (ß=-5·03; 95% CI=-8·01 - -2·05).

Interpretation: Our analysis supports findings from other studies demonstrating an association between Omicron and a lower risk of severe outcomes relative to Delta.

Funding Information: Canadian Institutes for Health Research (Institute of Infection and Immunity).

Declaration of Interests: MK has grants and contracts with AbCellera, Roche, Hologic, and Siemens, all of which unrelated to this study. NZJ participates in Abbvie Advisory Board meeting. All others authors declare no conflicts of interest.

Ethics Approval Statement: This study was reviewed and approved by the Behavioural Research Ethics Board at the University of British Columbia (#H20-02097).

Keywords: SARS-CoV-2, COVID-19, Omicron, Delta, Variant of concern, severity, hospitalization, ICU admission, length of stay, Population health

Suggested Citation

Harrigan, Sean Patrick and Wilton, James and Chong, Mei and Abdia, Younathan and Velásquez García, Héctor and Rose, Caren and Taylor, Marsha and Mishra, Sharmistha and Sander, Beate and Hoang, Linda and Tyson, John and Krajden, Mel and Prystajecky, Natalie and Janjua, Naveed and Sbihi, Hind, Clinical Severity of Omicron SARS-CoV-2 Variant Relative to Delta in British Columbia, Canada: A Retrospective Analysis of Whole Genome Sequenced Cases. Available at SSRN: https://ssrn.com/abstract=4053482 or http://dx.doi.org/10.2139/ssrn.4053482

Sean Patrick Harrigan

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

James Wilton

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

Mei Chong

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

Younathan Abdia

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

Héctor Velásquez García

University of British Columbia (UBC) - School of Population and Public Health ( email )

Caren Rose

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

Marsha Taylor

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

Sharmistha Mishra

University of Toronto - Department of Medicine ( email )

Canada

Beate Sander

University of Toronto - Toronto Health Economics and Technology Assessment (THETA) ( email )

Eaton Building, 10th Floor, Room 247
200 Elizabeth Street
Toronto, M5G 2C4
Canada

Linda Hoang

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

John Tyson

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

Mel Krajden

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

Natalie Prystajecky

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

Naveed Janjua

University of British Columbia (UBC) - School of Population and Public Health ( email )

Hind Sbihi (Contact Author)

BC Centre for Disease Control ( email )

Vancouver, BC
Canada

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