In silico analysis of genomic landscape of SARS-CoV-2 and its variant of concerns (Delta and Omicron) reveals changes in the coding potential of miRNAs and their target genes
Graphical abstract
Keywords
miRNA
SARS-CoV-2
Delta
Omicron
Variants
Target gene
Pathway
Abbreviations
ABCs
Age-associated B cells
BMP11
Bone Morphogenetic Protein
CNS
Central Nervous System
COPD
Chronic Obstructive Pulmonary Disease
COVID-19
Coronavirus Disease-2019
DAVID
Database for Annotation, Visualization and Integrated Discovery
DEGs
Differentially Expressed Genes
FGL2
Fibrinogen-like 2
GDF11
Growth Differentiation Factor 11
GEO
Gene Expression Omnibus
GO
Gene Ontology
ICU
Intensive Care Unit
JEV
Japanese Encephalitis Virus
KEGG
Kyoto Encyclopedia of Genes and Genomes
MFE
Minimum Free Energies
miRNAs
MicroRNAs
MMP14
Matrix Metalloproteinase-14
NCBI
National Centre for Biotechnology Information
NP
Nucleoprotein
nt
Nucleotides
ORFs
Open Reading Frames
PBMCs
Peripheral Blood Mononuclear Cells
pre-miRNAs
precursor miRNA
pri-miRNAs
primary miRNAs
PseDPC
Pseudo-Distance-Pair Composition
PTGS
Post-Transcriptional Gene Silencing
RNAa
RNA activation
RNAi
RNA interference
RSU1
Ras Suppressor-1
RT
Reverse Transcriptase
SARS-CoV-2
Severe Acute Respiratory Syndrome Coronavirus-2
SGMS1
Sphingomyelin Synthase 1
SM
Sphingomyelin
SVM
Support Vector Machine
TMEM192
Transmembrane protein 192
TNFRSF21
TNF Receptor Superfamily Member 21
TNSF
Tumor Necrosis Factor Superfamily
UCSC
University of California Santa Cruz
UTR
Untranslated region
VOCs
Variants of Concerns
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