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COVID answers in Scientific Journals all over the world

Publishing House: Microbiology Society

237 Results       Page 1

 [1] 
  original article Journal Date Title Authors All Authors
1 [GO] Journal of General Virology 2025―Apr―04 Distribution of aminopeptidase N coronavirus receptors in the respiratory and digestive tracts of domestic and wild artiodactyls and carnivores Fabian Z.X. Lean, Giulia Gallo, Joseph Newman, Stuart Ackroyd, Simon Spiro, Ruth Cox, et al. (+13)
2 [GO] Microbial Genomics 2025―Mar―17 Human respiratory syncytial virus genetic diversity and lineage replacement in Ireland pre- and post-COVID-19 pandemic Alan Rice, Gabriel Gonzalez, Michael Carr, Jonathan Dean, Emer O’Byrne, Lynn Aarts, et al. (+15)
3 [GO] Journal of Medical Microbiology 2025―Mar―07 Impact of the COVID-19 pandemic on invasive pneumococcal disease in American Indian communities in the Southwest US Catherine G. Sutcliffe, Shea Littlepage, Del Yazzie, George Brasinikas, Loretta Christensen, Shawnell Damon, et al. (+19)
4 [GO] Access Microbiology 2025―Feb―17 The ratio between SARS-CoV-2 RNA viral load and culturable viral titre differs depending on the stage of infection: a case study of household transmission in an adult male Michael K. Porter, Alexander Viloria Winnett, Linhui Hao, Natasha Shelby, Jessica A. Reyes, Noah W. Schlenker, et al. (+6)
5 [GO] Access Microbiology 2025―Feb―17 Immunogenicity of virus-like particle vaccine candidates against SARS-CoV-2 infection Hai Trong Nguyen, Ravendra Garg, Andrea Kroeker, Volker Gerdts, Darryl Falzarano, Qiang Liu, Amelia Baconawa
6 [GO] Journal of General Virology 2025―Feb―13 Comparative syncytia formation dynamics of coronavirus MHV-A59 and pneumovirus hRSV A2 and incorporation into improved kinetic virus replication models Emily H. Landwehr, Lyla R. Vivian, George G. Papadeas, Ethan J. White, Jayden M. Doster, Nicholas R. Brenner, et al. (+8)
7 [GO] Journal of General Virology 2025―Feb―12 Examining the feasibility of replacing ORF3a with fluorescent genes to construct SARS-CoV-2 reporter viruses Isobel Webb, Maximillian Erdmann, Rachel Milligan, Megan Savage, David A. Matthews, Andrew D. Davidson
8 [GO] Journal of General Virology 2025―Jan―30 Linking the function of cis-acting RNA elements to coronavirus replication using interactomes Yueh-Chun Yao, Chun-Chun Yang, Meilin Wang, Feng-Cheng Hsieh, Ching-Hung Lin, Hsuan-Wei Hsu, et al. (+5)
9 [GO] Access Microbiology 2025―Jan―29 Fungal positivity seen in tertiary care hospital during COVID-19 pandemic Ravinder Kaur, Deepti Rawat, Ashish William, Pradeep Kumar Singh, Neelam S.S. Kandir, Akanksha Sharma
10 [GO] Journal of Medical Microbiology 2025―Jan―22 The Apoprotein E4 isotype does not affect the severity of COVID-19 infection and other flu-like syndromes Marina Carvalho-Rassbach, Lucas Haniel Araujo Ventura, Larissa Oliveira Assis, Sabrina Fabrini, Manuelle Maria Pereira Natividade, Janayne Luihan Silva, et al. (+3)
11 [GO] Journal of General Virology 2025―Jan―13 HIV capsids: orchestrators of innate immune evasion, pathogenesis and pandemicity Kate L. Morling, Mohamed ElGhazaly, Richard S. B. Milne, Greg J. Towers
12 [GO] Access Microbiology 2025―Jan―09 Virucidal activity of olanexidine gluconate against SARS-CoV-2 Rika Watanabe, Takuma Yoshida, Hidemasa Nakaminami
13 [GO] Journal of General Virology 2025―Jan―09 A yeast-assembled, plasmid-launched reverse genetics system for the murine coronavirus MHV-A59 Cade E. Sterling, Natalie R. Wilson, Debreiona Y. Harris, Everett Clinton Smith
14 [GO] Journal of General Virology 2024―Dec―20 Comparison of different T cell assays for the retrospective determination of SARS-CoV-2 infection Benjamin Krishna, Marina Metaxaki, Marianne Perera, Mark Wills, Nyarie Sithole
15 [GO] Journal of General Virology 2024―Oct―30 BALB/c mice challenged with SARS-CoV-2 B.1.351 β variant cause pathophysiological and neurological changes within the lungs and brains Panatda Saenkham-Huntsinger, Aleksandra K. Drelich, Pinghan Huang, Bi-Hung Peng, Chien-Te K. Tseng
16 [GO] Microbial Genomics 2024―Oct―14 The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology Erin E. Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Nithu Sara John, et al. (+60)
17 [GO] Access Microbiology 2024―Oct―11 Spectrum of respiratory viruses identified from SARS-CoV-2-negative human respiratory tract specimens in Watansoppeng, Indonesia Irfan Idris, Isra Wahid, Ungke Antonjaya, Edison Johar, Fiqry Hasan Kleib, Ida Yus Sriyani, et al. (+8)
18 [GO] Journal of Medical Microbiology 2024―Oct―10 Predictors of the severity of the course of COVID-19: demographic factors, clinical signs and laboratory markers Klaudia Bartoszewicz, Mateusz Bartoszewicz, Samuel Stróż, Anna Stasiak-Barmuta, Piotr Kosiorek
19 [GO] Access Microbiology 2024―Oct―07 Genetic diversity and genomic epidemiology of SARS-CoV-2 during the first 3 years of the pandemic in Morocco: comprehensive sequence analysis, including the unique lineage B.1.528 in Morocco Soulandi Djorwé, Abderrahim Malki, Néhémie Nzoyikorera, Joseph Nyandwi, Samuel Privat Zebsoubo, Kawthar Bellamine, Amale Bousfiha
20 [GO] Journal of General Virology 2024―Sep―18 SARS-CoV-2 infection and transmission via the skin to oro-nasal route with the production of bioaerosols in the ferret model Rebecca Shipley, Amanda H. Seekings, Alexander M.P. Byrne, Shweta Shukla, Joe James, Hooman Goharriz, et al. (+5)
21 [GO] Access Microbiology 2024―Sep―11 Modelling SARS-CoV-2 infection in a human alveolus microphysiological system Tanja Šuligoj, Naomi S. Coombes, Catherine Booth, George M. Savva, Kevin R. Bewley, Simon G.P. Funnell, Nathalie Juge
22 [GO] Journal of Medical Microbiology 2024―Sep―02 Lessons learned: drive-through COVID-19 clinic testing during an adaptive epidemic response and a point-of-care test assessment of a computer-read rapid lateral flow immunoassay with fluorescence-based detection Leah Rankine-Wilson, Teresa Oncken, Irshan Basrewan, Courtney Jeffery, Todd M. Pryce, Rebecca Wake, et al. (+3)
23 [GO] Journal of Medical Microbiology 2024―Aug―29 Aspiration pneumonia after SARS-CoV-2 Omicron infection frequently induced physical functional decline in Japan Naoyuki Miyashita, Yasushi Nakamori, Makoto Ogata, Naoki Fukuda, Akihisa Yamura, Tomoki Ito
24 [GO] Journal of General Virology 2024―Aug―19 Diversifying selection identified in immune epitopes of bovine coronavirus isolates from Irish cattle Tristan Russell, Jose Maria Lozano, Cailyn Challinor, Gerald Barry
25 [GO] Journal of Medical Microbiology 2024―Aug―14 An end-point multiplex RT-PCR for SARS-CoV-2, Influenza A and B detection, including simultaneous RNAse P amplification: a timely tool for more accessible differential diagnosis Thaísa Regina Rocha Lopes, José Valter Joaquim Silva Júnior, Priscila de Arruda Trindade, Tatiana Schäffer Gregianini, Rudi Weiblen, Eduardo Furtado Flores
26 [GO] Microbial Genomics 2024―Jul―29 The use of representative community samples to assess SARS-CoV-2 lineage competition: Alpha outcompetes Beta and wild-type in England from January to March 2021 Oliver Eales, Andrew J. Page, Sonja N. Tang, Caroline E. Walters, Haowei Wang, David Haw, et al. (+15)
27 [GO] Access Microbiology 2024―Jul―22 In vitro comparison of viral replication and cytopathology induced by SARS-CoV-2 variants Kruttika S. Phadke, Nathaniel B. A. Higdon, Bryan H. Bellaire
28 [GO] Journal of General Virology 2024―Jul―12 SARS-CoV-2 infects neurons, astrocytes, choroid plexus epithelial cells and pericytes of the human central nervous system in vitro Ruth Haverty, Janet McCormack, Christopher Evans, Kevin Purves, Sophie O'Reilly, Virginie Gautier, et al. (+3)
29 [GO] Journal of Medical Microbiology 2024―Jul―12 Measles outbreak in 2019: a warning for the post-COVID-19 pandemic period Irma Salimović-Bešić, Sanjin Musa, Šejla Kotorić-Keser, Edina Zahirović, Selma Mutevelić, Amela Dedeić-Ljubović
30 [GO] Access Microbiology 2024―Jul―10 Investigating the effectiveness of commercially available mouthwash on SARS-CoV-2 in vivo using viable virus titre as the primary outcome. A randomised controlled trial D.W. Seymour, G. Forshaw, M. Porteous, D. Mawer, F. Wiggins, A. Mitchell, et al. (+10)
31 [GO] Journal of Medical Microbiology 2024―Jul―04 Dengue virus (DV) non-cross-reactive Omicron wave COVID-19 serums enhanced DV3 infectivity in vitro Supratim Sarker, Chiroshri Dutta, Abinash Mallick, Sayantan Das, Chandrika Das Chowdhury, Abhishek De, et al. (+2)
32 [GO] Access Microbiology 2024―Jun―26 Relationship between blood group (ABO) and risk of COVID-19 infection in a patient cohort in Tehran, Iran Asal Fathollahi, Haniyeh Bashizadeh Fakhar, Babak Shaghaghi
33 [GO] Journal of Medical Microbiology 2024―Jun―25 Antimicrobial resistance patterns among critical priority pathogens in an intensive care unit at a tertiary hospital in Egypt: a descriptive analysis comparing pre- and COVID-19 eras Mai M. Zafer, Dina M. Bassiouny, Soumya Ghosh, Charné Bornman, Amira F. A. Hussein
34 [GO] Access Microbiology 2024―Jun―19 Unearthing new learning opportunities: adapting and innovating through the ‘Antibiotics under our feet’ citizen science project in Scotland during COVID-19 Rebecca Mary Cornwell, Kirsty Ross, Caius Gibeily, Isobel Guthrie, Pak Hei Li, Laurence Taylor Seeley, et al. (+23)
35 [GO] Access Microbiology 2024―Jun―14 Prevalence of SARS-CoV-2 virus in saliva, stool, and urine samples of COVID-19 patients in Bihar, India Nupur Meghna, Archana Archana, Divendu Bhushan, Abhyuday Kumar, Asim Sarfraz, Bijaya Nanda Naik, Binod Kumar Pati
36 [GO] Access Microbiology 2024―May―31 Preparation of antiviral multispray with cationic antimicrobial dialkyldimethyl ammonium salt and sulfobetaine against new coronaviruses (SARS-CoV-2) Masahiko Morioka, Daisuke Shimaoka, Mamoru Ohnishi
37 [GO] Microbial Genomics 2024―May―24 Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data Steven G. Sutcliffe, Susanne A. Kraemer, Isaac Ellmen, Jennifer J. Knapp, Alyssa K. Overton, Delaney Nash, et al. (+28)
38 [GO] Journal of General Virology 2024―May―22 Role of N-linked glycosylation in porcine reproductive and respiratory syndrome virus (PRRSV) infection Raymond R.R. Rowland, Alberto Brandariz-Nuñez
39 [GO] Journal of Medical Microbiology 2024―May―21 Infectious bronchitis virus: an overview of the “chicken coronavirus” Marco Falchieri, Vivien J. Coward, Scott M. Reid, Tom Lewis, Ashley C. Banyard
40 [GO] Journal of General Virology 2024―May―08 Assessing the change in the epidemiology of seasonal respiratory viruses with the onset of the COVID-19 pandemic Yalcin Kara, Mahmut Can Kizil, Merve İşeri Nepesov, Ebru Kaçmaz, Eylem Kiral, Gurkan Bozan, et al. (+4)
41 [GO] Microbial Genomics 2024―Mar―21 Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover Rodrigo García-López, Blanca Taboada, Selene Zárate, José Esteban Muñoz-Medina, Angel Gustavo Salas-Lais, Alfredo Herrera-Estrella, et al. (+5)
42 [GO] Access Microbiology 2024―Feb―29 Examination of SARS-CoV-2 serological test results from multiple commercial and laboratory platforms with an in-house serum panel Sandra N. Lester, Megan Stumpf, Brandi D. Freeman, Lisa Mills, Jarad Schiffer, Vera Semenova, et al. (+29)
43 [GO] Microbial Genomics 2024―Feb―15 Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses Nadim Rahman, Colman O'Cathail, Ahmad Zyoud, Alexey Sokolov, Bas Oude Munnink, Björn Grüning, et al. (+41)
44 [GO] Microbial Genomics 2024―Feb―09 Investigating the rise of Omicron variant through genomic surveillance of SARS-CoV-2 infections in a highly vaccinated university population Ilinca I. Ciubotariu, Rebecca P. Wilkes, Jobin J. Kattoor, Erin N. Christian, Giovanna Carpi, Andrew Kitchen
45 [GO] Access Microbiology 2024―Jan―31 Lack of detection of SARS-CoV-2 in wildlife from Kerala, India in 2020-21 Arun Zachariah, Sajesh P. Krishnankutty, Jishnu Manazhi, Vishnu Omanakuttan, Sam Santosh, Adam Blanchard, Rachael Tarlinton
46 [GO] Access Microbiology 2024―Jan―31 Nephrogenic diabetes insipidus in a geriatric patient affected by SARS-CoV-2: complexity of a diagnosis, complexity of a virus Maria Ada Corich, Michele Niero, Lucia Corich, Elisabetta Ferretti, Paolo De Colle, Stella Bernardi, et al. (+3)
47 [GO] Journal of General Virology 2024―Jan―25 Enhancement of cellular immunity following needle-free vaccination of mice with SARS-CoV-2 spike protein Christopher L. D. McMillan, Danushka K. Wijesundara, Jovin J. Y. Choo, Alberto A. Amarilla, Naphak Modhiran, Germain J. P. Fernando, et al. (+4)
48 [GO] Microbial Genomics 2024―Jan―16 Mining genomic repositories to further our knowledge of the extent of SARS-CoV-2 co-infections Daniel Peñas-Utrilla, Patricia Muñóz, Laura Pérez-Lago, Darío García de Viedma
49 [GO] Microbial Genomics 2023―Dec―20 Spatiotemporal evolution of SARS-CoV-2 in the Bangkok metropolitan region, Thailand, 2020-2022: implications for future outbreak preparedness Pakorn Aiewsakun, Bharkbhoom Jamsai, Worakorn Phumiphanjarphak, Waritta Sawaengdee, Prasit Palittapongarnpim, Surakameth Mahasirimongkol
50 [GO] Microbial Genomics 2023―Dec―20 Characterization of the RofA regulon in the pandemic M1global and emergent M1UK lineages of Streptococcus pyogenes Xiangyun Zhi, Ana Vieira, Kristin K. Huse, Paulo J. Martel, Ludmila Lobkowicz, Ho Kwong Li, et al. (+4)
51 [GO] Microbial Genomics 2023―Dec―19 SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico Blanca Itzelt Taboada, Selene Zárate, Rodrigo García-López, José Esteban Muñoz-Medina, Bruno Gómez-Gil, Alfredo Herrera-Estrella, et al. (+9)
52 [GO] Access Microbiology 2023―Dec―12 Impact of swab removal in the detection of SARS-CoV-2 weakly-positive specimens Azul Zorzoli, Susan Bennett-Slater, Alasdair MacLean, Gina McAllister, Rory Gunson, Kate Templeton
53 [GO] Journal of General Virology 2023―Dec―07 Lack of detection of SARS-CoV-2 in British wildlife 2020-21 and first description of a stoat (Mustela erminea) Minacovirus Ternenge Apaa, Amy J. Withers, Laura Mackenzie, Ceri Staley, Nicola Dessi, Adam Blanchard, et al. (+9)
54 [GO] Microbial Genomics 2023―Nov―29 Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillance Sara E. Zufan, Katherine A. Lau, Angela Donald, Tuyet Hoang, Charles S. P. Foster, Chisha Sikazwe, et al. (+7)
55 [GO] Journal of Medical Microbiology 2023―Nov―28 Saliva sampling and its direct lysis is an excellent option for SARS-CoV-2 diagnosis in paediatric patients: comparison with the PanBio COVID-19 antigen rapid test in symptomatic and asymptomatic children Joaquín Moreno-Contreras, Marco A. Espinoza, Marco A. Cantú-Cuevas, Daniel A. Madrid-González, Héctor Barón-Olivares, Oscar D. Ortiz-Orozco, et al. (+3)
56 [GO] Access Microbiology 2023―Nov―28 The relationship between the number of COVID-19 vaccines and infection with Omicron ACE2 inhibition at 18-months post initial vaccination in an adult cohort of Canadian paramedics Justin Yap, Iryna Kayda, Michael Asamoah-Boaheng, Scott Haig, Tracy Kirkham, Sheldon Cheskes, et al. (+3)
57 [GO] Access Microbiology 2023―Nov―28 Eleven-month SARS-CoV-2 binding antibody decay, and associated factors, among mRNA vaccinees: implications for booster vaccination Michael Asamoah-Boaheng, Brian Grunau, Scott Haig, Mohammad Ehsanul Karim, Tracy Kirkham, Pascal M. Lavoie, et al. (+7)
58 [GO] Journal of General Virology 2023―Nov―24 Evolution of the coronavirus spike protein in the full-length genome and defective viral genome under diverse selection pressures Ching-Hung Lin, Hon-Man-Herman Tam, Cheng-Yao Yang, Feng-Cheng Hsieh, Jiun-Long Wang, Chun-Chun Yang, et al. (+3)
59 [GO] Journal of General Virology 2023―Nov―10 SARS-CoV-2 and the DNA damage response Roger J. Grand
60 [GO] Access Microbiology 2023―Oct―20 Determining the impact of vaccination on SARS-CoV-2 RT-PCR cycle threshold values and infectious viral titres Katherine L. Peterson, Julia P. Snyder, Hannah W. Despres, Madaline M. Schmidt, Korin M. Eckstrom, Allison L. Unger, et al. (+7)
61 [GO] Journal of Medical Microbiology 2023―Oct―19 Explore intersection genes of oxymatrine and COVID-19 with lung cancer as potential therapeutic targets based on network pharmacology Wei Wu, Chuan Cheng, Dongdong Yuan, Li Peng, Le Li
62 [GO] Access Microbiology 2023―Oct―18 A cross-sectional study in critically ill patients affected by COVID-19 in an intensive care unit: would Acinetobacter baumannii resistant to carbapenems be the biggest villain? Sayuri Rocha Yamashita, Vera Lucia Milani Martins, Elves Anderson Pires Maciel, Francine Johansson Azeredo
63 [GO] Journal of General Virology 2023―Oct―10 Desmoglein-2 and COVID-19 complications: insights into its role as a biomarker, pathogenesis and clinical implications Chidiebere F. Uchechukwu, Uchechukwu Love Anyaduba, Chukwuemeka Chinedum Udekwu, Oluwatosin Qawiyy Orababa, Ayomikun Emmanuel Kade
64 [GO] Journal of Medical Microbiology 2023―Oct―06 Rapid response of a public health reference laboratory to the COVID-19 pandemic Juliana Maira Watanabe Pinhata, Angela Pires Brandao, Daniela Leite, Rosangela Siqueira de Oliveira, Lucila Okuyama Fukasawa, Maria Gisele Gonçalves, et al. (+15)
65 [GO] Journal of General Virology 2023―Oct―06 MERS-CoV and SARS-CoV-2 membrane proteins are modified with polylactosamine chains Dylan Juckel, Lowiese Desmarets, Adeline Danneels, Yves Rouillé, Jean Dubuisson, Sandrine Belouzard
66 [GO] Access Microbiology 2023―Sep―27 Antiviral activity of salt-coated materials against SARS-CoV-2 Christopher M. Coleman, Belinda Wang, Yixin Wang, Emmanuel Tapia-Brito, Ziwei Chen, James Riffat, et al. (+3)
67 [GO] Access Microbiology 2023―Sep―27 Monitoring and tracking the spread of SARS-CoV-2 in Asturias, Spain Jose Maria Gonzalez-Alba, Susana Rojo-Alba, Zulema Perez-Martinez, Jose A. Boga, Marta Elena Alvarez-Arguelles, Juan Gomez, et al. (+16)
68 [GO] Journal of Medical Microbiology 2023―Sep―15 Erratum: Utility of in-house and commercial PCR assay in diagnosis of Covid-19 associated mucormycosis in an emergency setting in a tertiary care center Mragnayani Pandey, Janya Sachdev, Renu Kumari Yadav, Neha Sharad, Anupam Kanodia, Jaya Biswas, et al. (+17)
69 [GO] Microbial Genomics 2023―Aug―31 The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia Ashleigh F. Porter, Leo Featherstone, Courtney R. Lane, Norelle L. Sherry, Monica L. Nolan, David Lister, et al. (+3)
70 [GO] Journal of General Virology 2023―Aug―31 A novel chimeric vaccine candidate for porcine reproductive and respiratory syndrome virus (PRRSV) I and II elicits neutralizing antibodies against both types Sang-Ho Cha, Bang-Hun Hyun, Hyang-Sim Lee, Seok-Jin Kang, Su-Hwa You, Jiwoon Jeong, et al. (+3)
71 [GO] Journal of General Virology 2023―Aug―31 Continued adaptation of A/H2N2 viruses during pandemic circulation in humans Jasmin S. Kutter, Martin Linster, Dennis de Meulder, Theo M. Bestebroer, Pascal Lexmond, Miruna E. Rosu, et al. (+4)
72 [GO] Journal of Medical Microbiology 2023―Aug―25 Utility of in-house and commercial PCR assay in diagnosis of Covid-19 associated mucormycoss in an emergency setting in a tertiary care center Mragnayani Pandey, Janya Sachdev, Renu Kumari Yadav, Neha Sharad, Anupam Kanodia, Jaya Biswas, et al. (+17)
73 [GO] Journal of Medical Microbiology 2023―Aug―17 Evaluation of the efficacy of tongue swab and saliva as samples for testing COVID-19 infection in symptomatic cases in comparison with nasopharyngeal swab Anjali Anne Jacob, Cleetus C.C., Girija Mohan, Renu Mathew, George Chandy Matteethra, Afferedi M., et al. (+2)
74 [GO] Access Microbiology 2023―Aug―08 Challenges in the diagnosis and management of atypical fungal keratitis during the COVID-19 pandemic: a case series Dideeya Ali, Ajith Vijayan, Kashinatha Shenoy, Ann Tresa Antony, Reshmi Ramachandran
75 [GO] Journal of Medical Microbiology 2023―Aug―01 Serum levels of type I interferon (IFN-I) is associated with the severity of COVID-19 Yuting Sun, Gang Wang, Rongshuai Wang, Liang Ren, Zilin Yuan, Yueping Liu, et al. (+4)
76 [GO] Journal of General Virology 2023―Jul―26 Corrigendum: Inhibition of phosphodiesterase 12 results in antiviral activity against several RNA viruses including SARS-CoV-2 Mark Thursz, Fouzia Sadiq, Julia A. Tree, Peter Karayiannis, David W. C. Beasley, Wanwissa Dejnirattisai, et al. (+7)
77 [GO] Access Microbiology 2023―Jul―20 Assessing the evolution of SARS-CoV-2 lineages and the dynamic associations between nucleotide variations Asmita Gupta, Reelina Basu, Murali Dharan Bashyam
78 [GO] Journal of General Virology 2023―Jul―11 Inhibition of phosphodiesterase 12 results in antiviral activity against several RNA viruses including SARS-CoV-2 Mark Thursz, Fouzia Sadiq, Julia A. Tree, Peter Karayiannis, David W. C. Beasley, Wanwissa Dejnirattisai, et al. (+7)
79 [GO] Journal of Medical Microbiology 2023―Jun―30 Novel neutralizing mouse-human chimeric monoclonal antibodies against the SARS-CoV-2 receptor binding domain Ahmad Ghorbani, Faezeh Maghsood, Hamidreza Yadegari, Tannaz Bahadori, Amir-Hassan Zarnani, Seyed Alireza Razavi, et al. (+3)
80 [GO] Access Microbiology 2023―Jun―22 Respiratory bacterial co-infections and their antibiotic resistance pattern in COVID-19 patients at a tertiary care centre in India Mitra Kar, Tasneem Siddiqui, Akanksha Dubey, Zia Hashim, Chinmoy Sahu, Ujjala Ghoshal
81 [GO] Access Microbiology 2023―Jun―22 Post-COVID-19 cavitary lung lesion due to Aspergillus flavus and Enterobacter cloacae in a patient suffering from COVID-19 pneumonia - a case report Kamlesh Rajpal, Shailesh Kumar, Kumar Saurabh, Namrata Kumari, Rakesh Kumar, Randhir Kumar, Sweta Muni
82 [GO] Journal of General Virology 2023―Jun―21 ARF6 is a host factor for SARS-CoV-2 infection in vitro C. Mirabelli, J. Bragazzi Cunha, J. W. Wotring, E. J. Sherman, J. El Saghir, J. Harder, et al. (+4)
83 [GO] Journal of Medical Microbiology 2023―Jun―08 Impact of the COVID-19 restrictions on the epidemiology of Cryptosporidium spp. in England and Wales, 2015-2021: a time series analysis James P. Adamson, Rachel M. Chalmers, Daniel Rh. Thomas, Kristin Elwin, Guy Robinson, Alicia Barrasa
84 [GO] Microbial Genomics 2023―Jun―02 Pathogen genomics in public health laboratories: successes, challenges, and lessons learned from California’s SARS-CoV-2 Whole-Genome Sequencing Initiative, California COVIDNet Emily A. Smith, Kevin G. Libuit, Curtis J. Kapsak, Michelle R. Scribner, Sage M. Wright, John Bell, et al. (+9)
85 [GO] Journal of Medical Microbiology 2023―May―31 Expansion of hantavirus infection during the SARS-CoV-2 pandemic in Bosnia and Herzegovina, 2021 Irma Salimović-Bešić, Semir Hrvo, Edina Zahirović, El-Jesah Đulić, Rusmir Baljić, Amela Dedeić-Ljubović
86 [GO] Access Microbiology 2023―May―26 Viral infectivity in paediatric SARS-CoV-2 clinical samples does not vary by age Madaline M. Schmidt, Hannah W. Despres, David J. Shirley, Michael E. Bose, Kate C. McCaul, Jessica W. Crothers, et al. (+3)
87 [GO] Access Microbiology 2023―May―19 COVID-19 PCR: frequency of internal control inhibition in clinical practice Alessandro C. Pasqualotto, Amanda L. Seus
88 [GO] Microbial Genomics 2023―May―18 Fast and cost-effective SARS-CoV-2 variant detection using Oxford Nanopore full-length spike gene sequencing Cecilia Salazar, Ignacio Ferrés, Mercedes Paz, Alicia Costábile, Gonzalo Moratorio, Pilar Moreno, Gregorio Iraola
89 [GO] Journal of Medical Microbiology 2023―May―17 Implication of COVID-19 pandemic on the incidence of Clostridioides difficile infection in a Greek tertiary hospital Theodoros Karampatakis, Katerina Tsergouli, Eleni Kandilioti, Anna Nikopoulou, Helen Katsifa, Melina Kachrimanidou
90 [GO] Journal of Medical Microbiology 2023―May―12 A comparative analysis of the second and third wave of the Covid-19 pandemic: an experience from a tertiary care hospital in Western India Anjali Swami, Ankita Mohanty, Ashima Jamwal, Dilip Turbadkar, Sujata Baveja, Jayanthi Shastri, Vidushi Chitalia
91 [GO] Journal of General Virology 2023―May―11 Plasma after both SARS-CoV-2 boosted vaccination and COVID-19 potently neutralizes BQ.1.1 and XBB.1 David J. Sullivan, Massimo Franchini, Jonathon W. Senefeld, Michael J. Joyner, Arturo Casadevall, Daniele Focosi
92 [GO] Microbiology 2023―May―03 Sporadic type VI secretion in seventh pandemic Vibrio cholerae Alexis Proutière, Natália C. Drebes Dörr, Loriane Bader, Sandrine Stutzmann, Lisa C. Metzger, Sandrine Isaac, et al. (+2)
93 [GO] Access Microbiology 2023―Apr―21 Epidemiology, clinical characteristics and risk factors of coronavirus disease 2019 (COVID-19) in Casablanca Soulandi Djorwé, Amale Bousfiha, Néhémie Nzoyikorera, Victor Nkurunziza, Khadija Ait Mouss, Bellamine Kawthar, Abderrahim Malki
94 [GO] Microbial Genomics 2023―Apr―21 Analysis of the ARTIC V4 and V4.1 SARS-CoV-2 primers and their impact on the detection of Omicron BA.1 and BA.2 lineage-defining mutations Fatima R. Ulhuq, Madhuri Barge, Kerry Falconer, Jonathan Wild, Goncalo Fernandes, Abbie Gallagher, et al. (+8)
95 [GO] Microbial Genomics 2023―Apr―19 Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples Irene Bassano, Vinoy K. Ramachandran, Mohammad S. Khalifa, Chris J. Lilley, Mathew R. Brown, Ronny van Aerle, et al. (+14)
96 [GO] Microbial Genomics 2023―Apr―13 Novel recombinant SARS-CoV-2 lineage detected through genomic surveillance in Wales, UK Nicole Pacchiarini, Michelle Cronin, Clare Sawyer, Catie Williams, Andrew Beazer, Simon Cottrell, et al. (+5)
97 [GO] Microbial Genomics 2023―Apr―06 Increased clonality among Neisseria gonorrhoeae isolates during the COVID-19 pandemic in Amsterdam, the Netherlands H.C.A. Zondag, J. de Korne-Elenbaas, S.M. Bruisten, H.J.C. de Vries, A.P. van Dam
98 [GO] Microbial Genomics 2023―Mar―31 Genomic surveillance identifies SARS-CoV-2 transmission patterns in local university populations, Wisconsin, USA, 2020-2022 Arunachalam Ramaiah, Manjeet Khubbar, Amy Bauer, Samantha Scott, Jennifer Lentz, Katherine Akinyemi, et al. (+4)
99 [GO] Access Microbiology 2023―Feb―27 Vaccine-induced neutralizing antibodies against SARS-CoV-2 Omicron variant isolated in Osaka, Japan Satoshi Hiroi, Saeko Morikawa, Kazushi Motomura, Haruyo Mori
100 [GO] Microbial Genomics 2023―Feb―23 Upper respiratory tract microbiota dynamics following COVID-19 in adults Christian Rosas-Salazar, Kyle S. Kimura, Meghan H. Shilts, Britton A. Strickland, Michael H. Freeman, Bronson C. Wessinger, et al. (+6)
101 [GO] Journal of General Virology 2023―Feb―17 The health of influenza surveillance and pandemic preparedness in the wake of the COVID-19 pandemic Rodney Stuart Daniels, John William McCauley
102 [GO] Journal of General Virology 2023―Feb―14 A novel antiviral formulation containing caprylic acid inhibits SARS-CoV-2 infection of a human bronchial epithelial cell model Kevin Purves, Ruth Haverty, Tiina O'Neill, David Folan, Sophie O'Reilly, Alan W. Baird, et al. (+5)
103 [GO] Journal of Medical Microbiology 2023―Feb―10 SARS-CoV-2 in outdoor air following the third wave lockdown release, Portugal, 2021 Priscilla Gomes da Silva, Maria São José Nascimento, Sofia I. V. Sousa, João R. Mesquita
104 [GO] Journal of Medical Microbiology 2023―Jan―20 JMM Profile: Swine influenza A virus: a neglected virus with pandemic potential Benjamin C. Mollett, Helen E. Everett, Pauline M. van Diemen, Alexander M.P. Byrne, Andrew Ramsay, Joe James, et al. (+5)
105 [GO] Journal of Medical Microbiology 2023―Jan―09 Detection of IgM, IgG, IgA and neutralizing antibody responses to SARS-CoV-2 infection and mRNA vaccination Charles J. Fleischmann, Christina A. Bulman, Cassandra Yun, Kara L. Lynch, Alan H. B. Wu, Jeffrey D. Whitman
106 [GO] Journal of Medical Microbiology 2022―Dec―20 Massive sequencing of the V3-V4 hypervariable region of bronchoalveolar lavage from patients with COVID-19 and VAP reveals the collapse of the pulmonary microbiota Emilio Mariano Durán-Manuel, Miguel Ángel Loyola-Cruz, Clemente Cruz-Cruz, Gabriela Ibáñez-Cervantes, Javier Gaytán-Cervantes, Carolina González-Torres, et al. (+6)
107 [GO] Journal of General Virology 2022―Nov―22 Infectious droplet exposure is an inefficient route for SARS-CoV-2 infection in the ferret model Joe James, Alexander M. P. Byrne, Hooman Goharriz, Megan Golding, Joan M. A. Cuesta, Benjamin C. Mollett, et al. (+4)
108 [GO] Microbial Genomics 2022―Nov―16 Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain Oliver J. Charity, Luke Acton, Matt Bawn, Eleonora Tassinari, Gaёtan Thilliez, Marie A. Chattaway, et al. (+3)
109 [GO] Journal of Medical Microbiology 2022―Nov―08 Thrombotic storm in coronavirus disease 2019: from underlying mechanisms to its management Arghavan Zebardast, Tayebeh Latifi, Mehdi Shabani, Ali Hasanzadeh, Manizheh Danesh, Sara Babazadeh, Farzin Sadeghi
110 [GO] Access Microbiology 2022―Oct―27 Performance evaluation of Novaplex SARS-CoV-2 variants assay kit series for SARS-CoV-2 detection using single nucleotide polymorphisms Shinji Ogihara, Kotaro Aoki, Mami Nagashima, Kenji Sadamasu, Yoshikazu Ishii, Kazuhiro Tateda
111 [GO] Journal of Medical Microbiology 2022―Oct―27 A retrospective cross-sectional observational study of SARS-CoV-2 reinfection in La Ribera Health Department, Valencia, Spain Sebastián Luis Belloch García
112 [GO] Journal of General Virology 2022―Oct―25 Retraction notice: The middle half genome of interferon-inducing porcine reproductive and respiratory syndrome virus strain A2MC2 is essential for interferon induction
113 [GO] Access Microbiology 2022―Oct―03 Co-infection of SARS-CoV-2 with other respiratory pathogens in patients with liver disease Jasmine Samal, Reshu Agarwal, Anushka Soni, Amit Pandey, Shalini Thapar, Ekta Gupta
114 [GO] Microbial Genomics 2022―Sep―15 Phylodynamic analysis of SARS-CoV-2 spread in Rio de Janeiro, Brazil, highlights how metropolitan areas act as dispersal hubs for new variants Alessandra Pavan Lamarca, Luiz G. P. de Almeida, Ronaldo da Silva Francisco, Liliane Cavalcante, Otávio Brustolini, Alexandra L. Gerber, et al. (+17)
115 [GO] Journal of Medical Microbiology 2022―Aug―10 The acceptability of testing contacts of confirmed COVID-19 cases using serial, self-administered lateral flow devices as an alternative to self-isolation Nicola K. Love, Derren R. Ready, Charlie Turner, Lucy Yardley, G. James Rubin, Susan Hopkins, Isabel Oliver
116 [GO] Journal of Medical Microbiology 2022―Aug―03 SARS-CoV-2 seroprevalence in hospital healthcare workers in Western Switzerland at the end of the second pandemic wave Damien Jacot, Urs von Rotz, Fanny Blondet, Oriane Aebischer, Perreau Matthieu, Mikael De Rham, et al. (+3)
117 [GO] Microbial Genomics 2022―Jul―25 Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021 Georgi Merhi, Alexander J. Trotter, Leonardo de Oliveira Martins, Jad Koweyes, Thanh Le-Viet, Hala Abou Naja, et al. (+20)
118 [GO] Journal of Medical Microbiology 2022―Jun―23 Impact of COVID-19 on tuberculosis services: an experience from a tertiary care hospital Ashima Jamwal, Ankita Mohanty, Anjali Swami, Dilip Turbadkar
119 [GO] Journal of Medical Microbiology 2022―Jun―07 Combined oropharyngeal/nares and nasopharyngeal swab sampling remain effective for molecular detection of SARS-CoV-2 Omicron variant Glenn Patriquin, Jason J. LeBlanc, Holly A. Gillis, Gregory R. McCracken, Janice J. Pettipas, Todd F. Hatchette
120 [GO] Access Microbiology 2022―Jun―06 COVID-19-Associated mucormycosis: Case series from a tertiary care hospital in South India Shafeedha Rashbi K., T. M. Feroz Ali, Deepthi P. N., Saranya C. K., Rajan Joseph Payyappilly
121 [GO] Access Microbiology 2022―Jun―01 Performance study of the anterior nasal AMP SARS-CoV-2 rapid antigen test in comparison with nasopharyngeal rRT-PCR Georg Leixner, Astrid Voill-Glaninger, Isabella Krejci, Julia Gaugeler-Kurzweil, Tanja Kusstatscher, Walter Krugluger, André Viveiros
122 [GO] Journal of Medical Microbiology 2022―May―27 Network pharmacology and experimental validation identify the potential mechanism of sophocarpine for COVID-19 Hui-xian Zhang, Xin Zhang
123 [GO] Access Microbiology 2022―May―27 A comparison of SARS-CoV-2 RNA extraction with the QuickGene-810 Nucleic Acid Isolation System compared to the EZ1 Advanced DSP Virus Kit Thuy Phan, Rebecca Stephenson, Tina Cai, Nikol Andacic, Genevieve McKew
124 [GO] Access Microbiology 2022―May―27 Potentials of Breast Milk Antibodies as a Therapeutic for COVID-19 Victory Nnaemeka
125 [GO] Access Microbiology 2022―May―27 Teaching Microbial Genomics in the COVID-19 age: principles, theory, and practice Jem Stach, Jon Marles-Wright, Maria del Carmen Montero-Calasanz
126 [GO] Access Microbiology 2022―May―27 A Legionella’s outbreak in a COVID-19 pandemic setting Catarina Oliveira, Carla Leite, Helena Rodrigues, Fernando Fonseca
127 [GO] Access Microbiology 2022―May―27 Respiratory pathogens co-infection in patients with COVID-19 pneumonia in Kazakhstan Alyona Lavrinenko, Svetlana Kolesnichenko, Anar Turmukhambetova, Irina Kadyrova
128 [GO] Access Microbiology 2022―May―27 Longevity and neutralisation activity of secretory IgA following SARS-CoV-2 infection Samuel Ellis, Alice Burleigh, Rosie Way, Japhette Kembou-Ringert, Tereza Masonou, Kimberly Gilmour, et al. (+2)
129 [GO] Access Microbiology 2022―May―27 Comparison of lentiviral and vesicular stomatitis virus core SARS-CoV-2 pseudotypes and generation of a stable cell line for use in antibody neutralisation assays Martin Mayora Neto, Diego Cantoni, Cecilia di Genova, Simon Scott, Mariliza Derveni, Edward Wright, Nigel Temperton
130 [GO] Access Microbiology 2022―May―27 SARS-CoV-2 Spike has broad tropism for mammalian ACE2 proteins yet exhibits a distinct pattern of receptor usage when compared to other β-coronavirus Spike proteins Carina Conceicao*, Nazia Thakur*, Stacey Human, James T Kelly, Leanne Logan, Dagmara Bialy, et al. (+17)
131 [GO] Access Microbiology 2022―May―23 Comparative evaluation of chlorous acid and sodium hypochlorite activity against SARS-CoV-2 Noritoshi Hatanaka, Sharda Prasad Awasthi, Bingting Xu, Hisataka Goda, Hiroyuki Kawata, Isanori Horiuchi, et al. (+2)
132 [GO] Access Microbiology 2022―May―20 Saliva as an alternative specimen to nasopharyngeal swabs for COVID-19 diagnosis: Review Leah McPhillips, John MacSharry
133 [GO] Journal of Medical Microbiology 2022―May―18 Feasibility analysis and mechanism exploration of Rhei Radix et Rhizome-Schisandrae Sphenantherae Fructus (RS) against COVID-19 Jian-hong Qi, Fang-xu Dong, Ke Wang, Shan-yu Zhang, Zi-ming Liu, Wen-jing Wang, et al. (+3)
134 [GO] Journal of Medical Microbiology 2022―May―16 Reporting of RT-PCR cycle threshold (Ct) values during the first wave of COVID-19 in Qatar improved result interpretation in clinical and public health settings Peter V. Coyle, Naema Hassan Al Molawi, Mohamed Ali Ben Hadj Kacem, Reham Awni El Kahlout, Einas Al Kuwari, Abdullatif Al Khal, et al. (+15)
135 [GO] Journal of Medical Microbiology 2022―May―05 SARS-CoV-2 and Prevotella spp.: friend or foe? A systematic literature review Zohreh Tamanai-Shacoori, Sandrine Le Gall-David, Fouzia Moussouni, Alaa Sweidan, Elisabeth Polard, Latifa Bousarghin, Anne Jolivet-Gougeon
136 [GO] Journal of General Virology 2022―May―04 Mutations within scavenger receptor cysteine-rich (SRCR) protein domain 5 of porcine CD163 involved in infection with porcine reproductive and respiratory syndrome virus (PRRS) Ana M. M. Stoian, Raymond R. R. Rowland, Alberto Brandariz-Nuñez
137 [GO] Journal of Medical Microbiology 2022―Apr―22 An isothermal amplification-coupled dipstick for the rapid detection of COVID-19 Rathina Kumar Shanmugakani, Martin Wu
138 [GO] Access Microbiology 2022―Apr―19 Feasibility of a refurbished shipping container as a transportable laboratory for rapid SARS-CoV-2 diagnostics Stephen Muhi, Nick Tayler, Tuyet Hoang, Jacqueline Prestedge, Jean Y. H. Lee, Susan A. Ballard, et al. (+6)
139 [GO] Journal of Medical Microbiology 2022―Apr―13 Clonal spread of ArmA- and OXA-23-coproducing Acinetobacter baumannii International Clone 2 in Brazil during the first wave of the COVID-19 pandemic Carlos Henrique Camargo, Amanda Yaeko Yamada, Filipe Onishi Nagamori, Andreia Rodrigues de Souza, Monique Ribeiro Tiba-Casas, Flavia Aparecida de Moraes França, et al. (+5)
140 [GO] Journal of Medical Microbiology 2022―Apr―13 Effect of RNA quality to SARS-CoV-2 RT-qPCR detection from saliva Susanna Paju, Marika Tallgren, Anne Kivimäki, Laura Lahdentausta, Aino Salminen, Lotta Oksanen, et al. (+4)
141 [GO] Access Microbiology 2022―Apr―06 Second infection with SARS-CoV-2 wild-type is associated with increased disease burden after primary SARS-CoV-2/HBoV-1 coinfection, Cologne, Germany Wolfram Windisch, Michael Brockmann, Sabrina Demuth, Jessica Lüsebrink, Verena Schildgen, Oliver Schildgen
142 [GO] Journal of General Virology 2022―Apr―04 SARS-CoV-2 variants of concern alpha, beta, gamma and delta have extended ACE2 receptor host ranges Nazia Thakur, Giulia Gallo, Joseph Newman, Thomas P. Peacock, Luca Biasetti, Catherine N. Hall, et al. (+3)
143 [GO] Microbial Genomics 2022―Mar―17 Unusual SARS-CoV-2 intrahost diversity reveals lineage superinfection Filipe Zimmer Dezordi, Paola Cristina Resende, Felipe Gomes Naveca, Valdinete Alves do Nascimento, Victor Costa de Souza, Anna Carolina Dias Paixão, et al. (+25)
144 [GO] Microbial Genomics 2022―Mar―16 Targeted Sanger sequencing to recover key mutations in SARS-CoV-2 variant genome assemblies produced by next-generation sequencing Lavanya Singh, James E. San, Houriiyah Tegally, Pius M. Brzoska, Ugochukwu J. Anyaneji, Eduan Wilkinson, et al. (+8)
145 [GO] Access Microbiology 2022―Mar―04 Incidence of COVID-19 infection and its variation with demographic and clinical profile: lessons learned at a COVID-19 RT-PCR laboratory in Nagpur, India Neeta Gade, Soumyabrata Nag, Meena Mishra, Sujiv Akkilagunta, Vishal Shete, Vijay Bidkar, et al. (+2)
146 [GO] Journal of Medical Microbiology 2022―Feb―18 CPC-containing oral rinses inactivate SARS-CoV-2 variants and are active in the presence of human saliva Enyia R. Anderson, Edward I. Patterson, Siobhan Richards, Ana K. Pitol, Thomas Edwards, Dominic Wooding, et al. (+5)
147 [GO] Access Microbiology 2022―Feb―10 The neglected pathogen: case reports of severe lower respiratory tract infection by human coronavirus 229E Diptanu Paul, Akshita Gupta, Vikram Bhatia, Ekta Gupta
148 [GO] Journal of Medical Microbiology 2022―Jan―31 Prolonged SARS-CoV-2 nucleic acid conversion time in military personnel outbreaks with presence of specific IgG antibodies Jhonnatan Reales Gonzalez, Diego Prada Cardozo, Sheryll Corchuelo, Gabriela Zabaleta, Zonia Alarcón, Maria T. Herrera Sepulveda, et al. (+8)
149 [GO] Microbial Genomics 2022―Jan―31 Applied Bioinformatics and Public Health Microbiology: challenges, discoveries and innovations during a pandemic Edward Cunningham-Oakes, Hannah Trivett
150 [GO] Access Microbiology 2022―Jan―18 Surveillance of SARS-CoV-2 RNA in open-water sewage canals contaminated with untreated wastewater in resource-constrained regions Paramita Basu, Sandeepan Choudhury, Varsha Shridhar, Poorva Huilgol, Samrat Roychoudhury, Indranil Nandi, et al. (+2)
151 [GO] Journal of General Virology 2022―Jan―11 Selection and T-cell antigenicity of synthetic long peptides derived from SARS-CoV-2 Katarzyna Piadel, Amin Haybatollahi, Angus George Dalgleish, Peter Lawrence Smith
152 [GO] Access Microbiology 2021―Dec―14 Characteristics of patients with suspected COVID-19 pneumonia and repeatedly negative RT-PCR Paula Navarro-Carrera, Patricia Roces-Álvarez, Juan Carlos Ramos-Ramos, Dolores Montero, Itsaso Losantos, Beatriz Díaz-Pollán, Silvia García Bujalance
153 [GO] Microbial Genomics 2021―Dec―14 Genomic insights into the circulation of pandemic fluoroquinolone-resistant extra-intestinal pathogenic Escherichia coli ST1193 in Vietnam Quynh Nguyen, To Thi Nguyen Nguyen, Phuong Pham, Vinh Chau, Lan Phu Huong Nguyen, Toan Duc Nguyen, et al. (+7)
154 [GO] Journal of Medical Microbiology 2021―Dec―13 Comparing hospital-resource utilization by an enhanced pneumonia surveillance programme for COVID-19 with pre-pandemic pneumonia admissions - a Singaporean hospital’s experience Wenhui Huang, Gin Tsen Chai, Bernard Yu-Hor Thong, Mark Chan, Brenda Ang, Angela Chow
155 [GO] Microbial Genomics 2021―Dec―06 SARS-CoV-2 genetic variations associated with COVID-19 pathogenicity Pakorn Aiewsakun, Patrawee Nilplub, Patompon Wongtrakoongate, Suradej Hongeng, Arunee Thitithanyanont
156 [GO] Journal of Medical Microbiology 2021―Nov―30 Effect of COVID-19 on vaccination coverage in Brazil Marcelle Moura Silveira, Neida Lucia Conrad, Fábio Pereira Leivas Leite
157 [GO] Microbial Genomics 2021―Nov―30 Phylogenomics and population genomics of SARS-CoV-2 in Mexico during the pre-vaccination stage reveals variants of interest B.1.1.28.4 and B.1.1.222 or B.1.1.519 and the nucleocapsid mutation S194L associated with symptoms Francisco Barona-Gómez, Luis Delaye, Erik Díaz-Valenzuela, Fabien Plisson, Arely Cruz-Pérez, Mauricio Díaz-Sánchez, et al. (+10)
158 [GO] Microbial Genomics 2021―Nov―30 SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021 Muhammad Bilal Sarwar, Muhammad Yasir, Nabil-Fareed Alikhan, Nadeem Afzal, Leonardo de Oliveira Martins, Thanh Le Viet, et al. (+14)
159 [GO] Journal of General Virology 2021―Nov―24 Antibodies specific to SARS-CoV-2 proteins N, S and E in COVID-19 patients in the normal population and in historical samples Aleksander Szymczak, Natalia Jędruchniewicz, Alessandro Torelli, Agata Kaczmarzyk-Radka, Rosa Coluccio, Marlena Kłak, et al. (+7)
160 [GO] Journal of General Virology 2021―Nov―17 Infection in asymptomatic carriers of SARS-CoV-2 can interfere with the achievement of robust immunity on a population scale Kelvinson Viana, Luis Zarpelon, Andre Leandro, Maria Terencio, Renata Lopes, Caroline Martins, et al. (+11)
161 [GO] Microbial Genomics 2021―Nov―03 Insights on the SARS-CoV-2 genome variability: the lesson learned in Brazil and its impacts on the future of pandemics Victória Riquena Grosche, Igor Andrade Santos, Giulia Magalhães Ferreira, João Victor Rodrigues Dutra, Larissa Catharina Costa, Nilson Nicolau-Junior, et al. (+3)
162 [GO] Access Microbiology 2021―Nov―02 Not all wavelengths are created equal: disinfection of SARS-CoV-2 using UVC radiation is wavelength-dependent Richard M. Mariita, James W. Peterson
163 [GO] Access Microbiology 2021―Nov―02 Induction of innate immune responses by KPC-producing Klebsiella pneumoniae of the pandemic sequence type 258-clade I Asimina Balaska, Katerina Polonyfi, Anastasia Rigatou, Georgios Miliotis, Maritsa Margaroni, George L. Daikos, Maria Drogari-Apiranthitou
164 [GO] Journal of General Virology 2021―Oct―27 MERS-CoV infection causes brain damage in human DPP4-transgenic mice through complement-mediated inflammation Yuting Jiang, Yuehong Chen, Hong Sun, Xiaolu Zhang, Lei He, Jiangfan Li, et al. (+2)
165 [GO] Access Microbiology 2021―Oct―21 SARS-CoV-2 IgG antibody responses in rt-PCR-positive cases: first report from India Girish Chandra Dash, Debaprasad Parai, Hari Ram Choudhary, Annalisha Peter, Usha Kiran Rout, Rashmi Ranjan Nanda, et al. (+6)
166 [GO] Journal of General Virology 2021―Oct―08 Head-to-head evaluation of seven different seroassays including direct viral neutralisation in a representative cohort for SARS-CoV-2 Laura Olbrich, Noemi Castelletti, Yannik Schälte, Mercè Garí, Peter Pütz, Abhishek Bakuli, et al. (+27)
167 [GO] Access Microbiology 2021―Sep―23 Distribution of cycle threshold values in RT-qPCR tests during the autumn 2020 peak of the COVID-19 pandemic in the Czech Republic Michal Koblížek, Daniela Hávová, Karel Kopejtka, Jürgen Tomasch, Kateřina Bišová
168 [GO] Access Microbiology 2021―Sep―21 High SARS-CoV-2 viral load is associated with a worse clinical outcome of COVID-19 disease María Eugenia Soria, Marta Cortón, Brenda Martínez-González, Rebeca Lobo-Vega, Lucía Vázquez-Sirvent, Rosario López-Rodríguez, et al. (+12)
169 [GO] Journal of Medical Microbiology 2021―Sep―20 Absence of SARS-CoV-2 in the air and on the surfaces within the school environment Amit Thakar, Shawn Dutkiewicz, Timothy Hoffman, Paul Joyce, Vishal Shah
170 [GO] Journal of General Virology 2021―Sep―15 Prevalence and molecular characteristics of feline coronavirus in southwest China from 2017 to 2020 Qun Zhou, Yan Li, Jian Huang, Nengsheng Fu, Xin Song, Xue Sha, Bin Zhang
171 [GO] Journal of Medical Microbiology 2021―Sep―06 Sample collection and transport strategies to enhance yield, accessibility, and biosafety of COVID-19 RT-PCR testing Padmapriya Banada, David Elson, Naranjargal Daivaa, Claire Park, Samuel Desind, Ibsen Montalvan, et al. (+4)
172 [GO] Journal of Medical Microbiology 2021―Sep―01 To zinc or not to zinc for COVID-19 prophylaxis or treatment? Kate Chander Chiang, Ajay Gupta
173 [GO] Journal of Medical Microbiology 2021―Aug―27 Pan-drug resistant Providencia rettgeri contributing to a fatal case of COVID-19 Patrick Mc Gann, Matthew R. Geringer, Lindsey R. Hall, Francois Lebreton, Elizabeth Markelz, Yoon I. Kwak, et al. (+9)
174 [GO] Access Microbiology 2021―Aug―26 Performance comparison of micro-neutralization assays based on surrogate SARS-CoV-2 and WT SARS-CoV-2 in assessing virus-neutralizing capacity of anti-SARS-CoV-2 antibodies Inna Sekirov, Martin Petric, Erin Carruthers, David Lawrence, Tamara Pidduck, Jesse Kustra, et al. (+10)
175 [GO] Journal of General Virology 2021―Aug―23 Analysis of the avian coronavirus spike protein reveals heterogeneity in the glycans present Phoebe Stevenson-Leggett, Stuart Armstrong, Sarah Keep, Paul Britton, Erica Bickerton
176 [GO] Journal of Medical Microbiology 2021―Aug―16 Immunogenicity after the first dose of the BNT162b2 mRNA Covid-19 vaccine: real-world evidence from Greek healthcare workers Konstantina Kontopoulou, Alexandra Ainatzoglou, Athina Ifantidou, Christos T. Nakas, Georgia Gkounti, Vasilios Adamopoulos, et al. (+2)
177 [GO] Journal of Medical Microbiology 2021―Aug―09 Validation of saliva sampling as an alternative to oro-nasopharyngeal swab for detection of SARS-CoV-2 using unextracted rRT-PCR with the Allplex 2019-nCoV assay Marco Andres Bergevin, Wesley Freppel, Guylaine Robert, Georges Ambaraghassi, Dany Aubry, Olivier Haeck, et al. (+2)
178 [GO] Access Microbiology 2021―Aug―06 Bloodstream infection by Saccharomyces cerevisiae in a COVID-19 patient receiving probiotic supplementation in the ICU in Brazil Gabryela Pinto, Lorena Lima, Thaís Pedra, Adriana Assumpção, Sergio Morgado, Luiz Mascarenhas
179 [GO] Journal of General Virology 2021―Jul―28 Combined computational and cellular screening identifies synergistic inhibition of SARS-CoV-2 by lenvatinib and remdesivir Marie O. Pohl, Idoia Busnadiego, Francesco Marrafino, Lars Wiedmer, Annika Hunziker, Sonja Fernbach, et al. (+5)
180 [GO] Journal of Medical Microbiology 2021―Jul―27 Network pharmacology and molecular docking analysis on mechanisms of Tibetan Hongjingtian (Rhodiola crenulata) in the treatment of COVID-19 Li Wang, Yuhe Wang, Wei Yang, Xue He, Shilin Xu, Xiaoli Liu, et al. (+4)
181 [GO] Journal of Medical Microbiology 2021―Jul―26 Acceptable performance of the Abbott ID NOW among symptomatic individuals with confirmed COVID-19 William Stokes, Byron M. Berenger, Takshveer Singh, Ifueko Adeghe, Angela Schneider, Danielle Portnoy, et al. (+9)
182 [GO] Access Microbiology 2021―Jul―19 Genomic epidemiological analysis of SARS-CoV-2 household transmission Daniel Hare, Gabriel Gonzalez, Jonathan Dean, Kathleen McDonnell, Michael J. Carr, Cillian F. De Gascun
183 [GO] Access Microbiology 2021―Jul―08 The value of repeat patient testing for SARS-CoV-2: real-world experience during the first wave Alex Zhu, Margaret Creagh, Chao Qi, Shannon Galvin, Maureen Bolon, Teresa Zembower
184 [GO] Microbial Genomics 2021―Jun―29 Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management Andrew J. Page, Alison E. Mather, Thanh Le-Viet, Emma J. Meader, Nabil-Fareed Alikhan, Gemma L. Kay, et al. (+36)
185 [GO] Microbial Genomics 2021―Jun―22 Genomic epidemiology of the first epidemic wave of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Palestine Nouar Qutob, Zaidoun Salah, Damien Richard, Hisham Darwish, Husam Sallam, Issa Shtayeh, et al. (+5)
186 [GO] Journal of General Virology 2021―Jun―16 Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom Joseph G. Chappell, Theocharis Tsoleridis, Gemma Clark, Louise Berry, Nadine Holmes, Christopher Moore, et al. (+18)
187 [GO] Microbial Genomics 2021―Jun―15 Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection Matthew J. Dorman, Nicholas R. Thomson, Josefina Campos
188 [GO] Journal of Medical Microbiology 2021―Jun―10 Archived dengue serum samples produced false-positive results in SARS-CoV-2 lateral flow-based rapid antibody tests Himadri Nath, Abinash Mallick, Subrata Roy, Soumi Sukla, Keya Basu, Abhishek De, Subhajit Biswas
189 [GO] Journal of Medical Microbiology 2021―May―06 Impact of different SARS-CoV-2 assays on laboratory turnaround time Bastian Marquis, Onya Opota, Katia Jaton, Gilbert Greub
190 [GO] Journal of General Virology 2021―May―06 Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells Thrimendra Kaushika Dissanayake, Bingpeng Yan, Anthony Chin-Ki Ng, Hanjun Zhao, Gabriella Chan, Cyril Chik-Yan Yip, et al. (+2)
191 [GO] Journal of General Virology 2021―May―06 SARS-CoV-2 replicon for high-throughput antiviral screening Qiu-Yan Zhang, Cheng-Lin Deng, Jing Liu, Jia-Qi Li, Hong-Qing Zhang, Na Li, et al. (+5)
192 [GO] Access Microbiology 2021―May―04 Re-opening hairdressing salons, barber shops and gyms following COVID-19 lockdown: reducing risks from Legionella species through successful domestic steam disinfection of showerheads Beverley C. Millar, Jonalyn Ferris, Alan Murphy, Norman Reid, John E. Moore
193 [GO] Journal of General Virology 2021―Apr―29 Effective in vitro inactivation of SARS-CoV-2 by commercially available mouthwashes Katherine Davies, Hubert Buczkowski, Stephen R. Welch, Nicole Green, Damian Mawer, Neil Woodford, et al. (+4)
194 [GO] Access Microbiology 2021―Apr―26 Inactivation of SARS-CoV-2 on surfaces and in solution with Virusend (TX-10), a novel disinfectant Enyia R. Anderson, Grant L. Hughes, Edward I. Patterson
195 [GO] Journal of General Virology 2021―Apr―23 Investigative study into whether an insect repellent has virucidal activity against SARS-CoV-2 Sophie J. Smither, Lin S. Eastaugh, James S. Findlay, Thomas R. Laws, Stephen N. Marriott, Stuart Notman, et al. (+7)
196 [GO] Journal of Medical Microbiology 2021―Apr―16 Clinical characteristics and antibody response to SARS-CoV-2 spike 1 protein using VITROS Anti-SARS-CoV-2 antibody tests in COVID-19 patients in Japan Mayu Nagura-Ikeda, Kazuo Imai, Katsumi Kubota, Sakiko Noguchi, Yutaro Kitagawa, Masaru Matsuoka, et al. (+5)
197 [GO] Journal of Medical Microbiology 2021―Apr―16 Co-infection in critically ill patients with COVID-19: an observational cohort study from England Vadsala Baskaran, Hannah Lawrence, Louise E. Lansbury, Karmel Webb, Shahideh Safavi, Nurul I. Zainuddin, et al. (+25)
198 [GO] Journal of Medical Microbiology 2021―Apr―15 Development, deployment and in-field demonstration of mobile coronavirus SARS-CoV-2 Nucleic acid amplification test Teagan F. Paton, Ian Marr, Zoe O’Keefe, Timothy J. J. Inglis
199 [GO] Journal of General Virology 2021―Apr―15 SARS-CoV-2 one year on: evidence for ongoing viral adaptation Thomas P. Peacock, Rebekah Penrice-Randal, Julian A. Hiscox, Wendy S. Barclay
200 [GO] Journal of General Virology 2021―Apr―08 The green tea catechin epigallocatechin gallate inhibits SARS-CoV-2 infection Lisa Henss, Arne Auste, Christoph Schürmann, Christin Schmidt, Christine von Rhein, Michael D. Mühlebach, Barbara S. Schnierle
201 [GO] Journal of Medical Microbiology 2021―Mar―24 Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Timothy J. J. Inglis, Kalai Mathee
202 [GO] Journal of Medical Microbiology 2021―Mar―18 Profile of specific antibodies to the SARS-CoV-2 Danlei Mou, Huahua Feng, Ruiyuan Cao, Xing Weng, Lizhe Zhao, Lingling Yang, et al. (+2)
203 [GO] Journal of Medical Microbiology 2021―Mar―18 Comparative effects of viral-transport-medium heat inactivation upon downstream SARS-CoV-2 detection in patient samples Jamie L. Thompson, Angela Downie Ruiz Velasco, Alice Cardall, Rebecca Tarbox, Jaineeta Richardson, Gemma Clarke, et al. (+11)
204 [GO] Access Microbiology 2021―Mar―10 Mycoplasma pneumoniae co-infection with SARS-CoV-2: A case report Rama Chaudhry, K. Sreenath, E. V. Vinayaraj, Biswajeet Sahoo, M. R. Vishnu Narayanan, K. V. P. Sai Kiran, et al. (+5)
205 [GO] Journal of Medical Microbiology 2021―Feb―25 Normal breathing releases SARS-CoV-2 into the air Piero Di Carlo, Katia Falasca, Claudio Ucciferri, Bruna Sinjari, Eleonora Aruffo, Ivana Antonucci, et al. (+11)
206 [GO] Journal of General Virology 2021―Feb―22 Hamster and ferret experimental infection with intranasal low dose of a single strain of SARS-CoV-2 Elodie Monchatre-Leroy, Sandrine Lesellier, Marine Wasniewski, Evelyne Picard-Meyer, Céline Richomme, Franck Boué, et al. (+8)
207 [GO] Journal of General Virology 2021―Feb―15 A comprehensive profile of genomic variations in the SARS-CoV-2 isolates from the state of Telangana, India Asmita Gupta, Radhakrishnan Sabarinathan, Pratyusha Bala, Vinay Donipadi, Divya Vashisht, Madhumohan Rao Katika, et al. (+4)
208 [GO] Access Microbiology 2021―Feb―11 Pulmonary aspergillosis in two COVID-19 patients from Kuwait Khaled Alobaid, Beena Yousuf, Eman Al-Qattan, Zainab Muqeem, Nawaf Al-Subaie
209 [GO] Journal of General Virology 2021―Jan―28 Targeting novel structural and functional features of coronavirus protease nsp5 (3CLpro, Mpro) in the age of COVID-19 Molly K. Roe, Nathan A. Junod, Audrey R. Young, Dia C. Beachboard, Christopher C. Stobart
210 [GO] Journal of Medical Microbiology 2021―Jan―21 Emergence of mgrB locus deletion mediating polymyxin resistance in pandemic KPC-producing Klebsiella pneumoniae ST15 lineage Luís Guilherme de Araújo Longo, Herrison Fontana, Viviane Santos de Sousa, Natalia Chilinque Zambão da Silva, Ianick Souto Martins, Beatriz Meurer Moreira
211 [GO] Journal of General Virology 2021―Jan―11 A genetic element in the SARS-CoV-2 genome is shared with multiple insect species Torstein Tengs, Charles F. Delwiche, Christine Monceyron Jonassen
212 [GO] Journal of General Virology 2021―Jan―08 Assessment of inactivation procedures for SARS-CoV-2 Heidi Auerswald, Sokhoun Yann, Sokha Dul, Saraden In, Philippe Dussart, Nicholas J. Martin, et al. (+2)
213 [GO] Journal of Medical Microbiology 2021―Jan―06 Clinical evaluation of a fully automated, laboratory-developed multiplex RT-PCR assay integrating dual-target SARS-CoV-2 and influenza A/B detection on a high-throughput platform Dominik Nörz, Armin Hoffmann, Martin Aepfelbacher, Susanne Pfefferle, Marc Lütgehetmann
214 [GO] Journal of General Virology 2020―Dec―17 Understanding the outcomes of COVID-19 - does the current model of an acute respiratory infection really fit? Peter Simmonds, Sarah Williams, Heli Harvala
215 [GO] Journal of Medical Microbiology 2020―Dec―03 Detection of SARS-CoV-2 in saliva: implications for specimen transport and storage Eloise Williams, Nicole Isles, Brian Chong, Katherine Bond, Yano Yoga, Julian Druce, et al. (+4)
216 [GO] Access Microbiology 2020―Nov―12 Development of a protocol for detection of SARS-CoV-2 in sputum and endotracheal aspirates using Cepheid Xpert Xpress SARS-CoV-2 Michael Malczynski, Saba Rezaeian, Javier Rios, Laura Dirnberger, Wanda Polanco, Teresa Zembower, Chao Qi
217 [GO] Journal of General Virology 2020―Nov―05 Lysine 164 is critical for SARS-CoV-2 Nsp1 inhibition of host gene expression Zhou Shen, Guangxu Zhang, Yilin Yang, Mengxia Li, Siqi Yang, Guiqing Peng
218 [GO] Microbial Genomics 2020―Oct―28 Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic Salmonella enterica serovar Typhimurium clone Eleonora Tassinari, Matt Bawn, Gaetan Thilliez, Oliver Charity, Luke Acton, Mark Kirkwood, et al. (+6)
219 [GO] Journal of General Virology 2020―Sep―30 Microbiology Society online workshop on SARS-CoV-2 and COVID-19, Wednesday 29 July 2020 Mark Harris
220 [GO] Journal of Medical Microbiology 2020―Sep―15 Zinc sulfate in combination with a zinc ionophore may improve outcomes in hospitalized COVID-19 patients Philip M. Carlucci, Tania Ahuja, Christopher Petrilli, Harish Rajagopalan, Simon Jones, Joseph Rahimian
221 [GO] Journal of General Virology 2020―Sep―09 Predicting the recombination potential of severe acute respiratory syndrome coronavirus 2 and Middle East respiratory syndrome coronavirus Arinjay Banerjee, Andrew C. Doxey, Benjamin J.-M. Tremblay, Michael J. Mansfield, Sonu Subudhi, Jeremy A. Hirota, et al. (+4)
222 [GO] Journal of General Virology 2020―Sep―09 Analysis of partial sequences of the RNA-dependent RNA polymerase gene as a tool for genus and subgenus classification of coronaviruses David A. Wilkinson, Léa Joffrin, Camille Lebarbenchon, Patrick Mavingui
223 [GO] Access Microbiology 2020―Sep―08 Identification of a SARS-like bat coronavirus that shares structural features with the spike glycoprotein receptor-binding domain of SARS-CoV-2 Conchita Fraguas Bringas, David Booth
224 [GO] Journal of General Virology 2020―Sep―07 Construction and efficacy evaluation of novel swine leukocyte antigen (SLA) class I and class II allele-specific poly-T cell epitope vaccines against porcine reproductive and respiratory syndrome virus Debin Tian, Sakthivel Subramaniam, C. Lynn Heffron, Hassan M. Mahsoub, Harini Sooryanarain, Bo Wang, et al. (+6)
225 [GO] Journal of General Virology 2020―Aug―21 SARS-CoV-2 growth, furin-cleavage-site adaptation and neutralization using serum from acutely infected hospitalized COVID-19 patients William B. Klimstra, Natasha L. Tilston-Lunel, Sham Nambulli, James Boslett, Cynthia M. McMillen, Theron Gilliland, et al. (+9)
226 [GO] Journal of Medical Microbiology 2020―Aug―12 Epidemiological and clinical characteristics of coronavirus disease (COVID-19) cases at a screening clinic during the early outbreak period: a single-centre study Maria Khan, Haris Khan, Shehriyar Khan, Maimoona Nawaz
227 [GO] Journal of Medical Microbiology 2020―Aug―05 Validation of a single-step, single-tube reverse transcription loop-mediated isothermal amplification assay for rapid detection of SARS-CoV-2 RNA Jean Y. H. Lee, Nickala Best, Julie McAuley, Jessica L. Porter, Torsten Seemann, Mark B. Schultz, et al. (+22)
228 [GO] Journal of General Virology 2020―Jul―28 Multiple novel non-canonically transcribed sub-genomic mRNAs produced by avian coronavirus infectious bronchitis virus Sarah Keep, Michael S. Oade, Filip Lidzbarski-Silvestre, Kirsten Bentley, Phoebe Stevenson-Leggett, Graham L. Freimanis, et al. (+6)
229 [GO] Journal of General Virology 2020―Jul―15 A putative new SARS-CoV protein, 3c, encoded in an ORF overlapping ORF3a Andrew E. Firth
230 [GO] Journal of General Virology 2020―Jun―24 Insights into SARS-CoV-2, the Coronavirus Underlying COVID-19: Recent Genomic Data and the Development of Reverse Genetics Systems Severino Jefferson Ribeiro da Silva, Renata Pessôa Germano Mendes, Caroline Targino Alves da Silva, Alessio Lorusso, Alain Kohl, Lindomar Pena
231 [GO] Microbial Genomics 2020―Jun―18 Dynamic linkage of COVID-19 test results between Public Health England’s Second Generation Surveillance System and UK Biobank Jacob Armstrong, Justine K. Rudkin, Naomi Allen, Derrick W. Crook, Daniel J. Wilson, David H. Wyllie, Anne Marie O’Connell
232 [GO] Journal of General Virology 2020―Jun―15 Molecular simulation of SARS-CoV-2 spike protein binding to pangolin ACE2 or human ACE2 natural variants reveals altered susceptibility to infection Jingfang Wang, Xintian Xu, Xinbo Zhou, Ping Chen, Huiying Liang, Xuan Li, et al. (+2)
233 [GO] Journal of Medical Microbiology 2020―Jun―11 Pandemic planning: plotting a course through the coronawars Timothy J. J. Inglis
234 [GO] Journal of Medical Microbiology 2020―May―29 Potential RNA-dependent RNA polymerase inhibitors as prospective therapeutics against SARS-CoV-2 Rudramani Pokhrel, Prem Chapagain, Jessica Siltberg-Liberles
235 [GO] Access Microbiology 2020―May―27 Prolonged viral shedding and new mutations of COVID-19 could complicate the control of the pandemic Chieh-Fan Chen, Tung-Yuan Tsai, Chen-Hui Yu, Hsiang-Lan Cheng, Ting-Yu Yeh
236 [GO] Journal of General Virology 2020―May―20 The dynamics of humoral immune responses following SARS-CoV-2 infection and the potential for reinfection Paul Kellam, Wendy Barclay
237 [GO] Journal of Medical Microbiology 2020―Apr―22 Logic in the time of coronavirus Timothy J. J. Inglis
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