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original article |
Date |
Title |
Authors Max. 6 Authors |
| 1 |
[GO] |
2025―Apr―17 |
Mechanistic insights into the activity of SARS-CoV-2 RNA polymerase inhibitors using single-molecule FRET |
Danielle Groves, Rory Cunnison, Andrew McMahon, Haitian Fan, Jane Sharps, Adrian Deng, Jeremy R Keown, Ervin Fodor, Nicole C Robb |
| 2 |
[GO] |
2025―Feb―20 |
Virus-derived siRNA: Coronavirus and influenza virus trigger antiviral RNAi immunity in birds |
Yaotang Wu, Peng Liu, Jie Zhou, Mei Fu, Chenlu Wang, Ningna Xiong, Wenxin Ji, Zhisheng Wang, Jian Lin, Qian Yang |
| 3 |
[GO] |
2024―Jun―18 |
Correction to ‘Structure of an internal loop motif with three consecutive U·U mismatches from stem-loop 1 in the 3′-UTR of the SARS-CoV-2 genomic RNA’ |
|
| 4 |
[GO] |
2024―Jun―06 |
The 5′-terminal stem-loop RNA element of SARS-CoV-2 features highly dynamic structural elements that are sensitive to differences in cellular pH |
Sabrina Toews, Anna Wacker, Edgar M Faison, Elke Duchardt-Ferner, Christian Richter, Daniel Mathieu, Sandro Bottaro, Qi Zhang, Harald Schwalbe |
| 5 |
[GO] |
2024―May―24 |
Structure of an internal loop motif with three consecutive U•U mismatches from stem-loop 1 in the 3′-UTR of the SARS-CoV-2 genomic RNA |
Jennifer Vögele, Elke Duchardt-Ferner, Jasleen Kaur Bains, Bozana Knezic, Anna Wacker, Christian Sich, Julia E Weigand, Jiří Šponer, Harald Schwalbe, Miroslav Krepl, Jens Wöhnert |
| 6 |
[GO] |
2024―Apr―18 |
SARS-CoV-2 nsp15 preferentially degrades AU-rich dsRNA via its dsRNA nickase activity |
Xionglue Wang, Bin Zhu |
| 7 |
[GO] |
2024―Apr―08 |
Assembly of SARS-CoV-2 nucleocapsid protein with nucleic acid |
Huaying Zhao, Abdullah M Syed, Mir M Khalid, Ai Nguyen, Alison Ciling, Di Wu, Wai-Ming Yau, Sanjana Srinivasan, Dominic Esposito, Jennifer A Doudna, Grzegorz Piszczek, Melanie Ott, Peter Schuck |
| 8 |
[GO] |
2024―Mar―19 |
Despite the odds: formation of the SARS-CoV-2 methylation complex |
Alex Matsuda, Jacek Plewka, Michał Rawski, André Mourão, Weronika Zajko, Till Siebenmorgen, Leanid Kresik, Kinga Lis, Alisha N Jones, Magdalena Pachota, Abdulkarim Karim, Kinga Hartman, Shivlee Nirwal, Ravi Sonani, Yuliya Chykunova, Igor Minia, Paweł Mak, Markus Landthaler, Marcin Nowotny, Grzegorz Dubin, Michael Sattler, Piotr Suder, Grzegorz M Popowicz, Krzysztof Pyrć, Anna Czarna |
| 9 |
[GO] |
2024―Feb―01 |
Identification of Hammerhead-variant ribozyme sequences in SARS-CoV-2 |
Getong Liu, Hengyi Jiang, Dongrong Chen, Alastair I H Murchie |
| 10 |
[GO] |
2023―Dec―28 |
The disordered N-terminal tail of SARS-CoV-2 Nucleocapsid protein forms a dynamic complex with RNA |
Jasmine Cubuk, Jhullian J Alston, J Jeremías Incicco, Alex S Holehouse, Kathleen B Hall, Melissa D Stuchell-Brereton, Andrea Soranno |
| 11 |
[GO] |
2023―Dec―14 |
An exonuclease-resistant chain-terminating nucleotide analogue targeting the SARS-CoV-2 replicase complex |
Ashleigh Shannon, Aurélie Chazot, Mikael Feracci, Camille Falcou, Véronique Fattorini, Barbara Selisko, Steven Good, Adel Moussa, Jean-Pierre Sommadossi, François Ferron, Karine Alvarez, Bruno Canard |
| 12 |
[GO] |
2023―Nov―13 |
A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort |
Daniel Beltrán, Adam Hospital, Josep Lluís Gelpí, Modesto Orozco |
| 13 |
[GO] |
2023―Oct―28 |
COV2Var, a function annotation database of SARS-CoV-2 genetic variation |
Yuzhou Feng, Jiahao Yi, Lin Yang, Yanfei Wang, Jianguo Wen, Weiling Zhao, Pora Kim, Xiaobo Zhou |
| 14 |
[GO] |
2023―Oct―11 |
Atomistic structure of the SARS-CoV-2 pseudoknot in solution from SAXS-driven molecular dynamics |
Weiwei He, Josue San Emeterio, Michael T Woodside, Serdal Kirmizialtin, Lois Pollack |
| 15 |
[GO] |
2023―Oct―04 |
High-resolution structure of stem-loop 4 from the 5′-UTR of SARS-CoV-2 solved by solution state NMR |
Jennifer Vögele, Daniel Hymon, Jason Martins, Jan Ferner, Hendrik R A Jonker, Amanda E Hargrove, Julia E Weigand, Anna Wacker, Harald Schwalbe, Jens Wöhnert, Elke Duchardt-Ferner |
| 16 |
[GO] |
2023―Sep―08 |
Unfolding of an RNA G-quadruplex motif in the negative strand genome of porcine reproductive and respiratory syndrome virus by host and viral helicases to promote viral replication |
Puxian Fang, Congbao Xie, Ting Pan, Ting Cheng, Wei Chen, Sijin Xia, Tong Ding, Junkang Fang, Yanrong Zhou, Liurong Fang, Dengguo Wei, Shaobo Xiao |
| 17 |
[GO] |
2023―Sep―04 |
SARS-CoV-2 Nsp8 N-terminal domain folds autonomously and binds dsRNA |
Miguel Á Treviño, David Pantoja-Uceda, Douglas V Laurents, Miguel Mompeán |
| 18 |
[GO] |
2023―Aug―10 |
Observing inhibition of the SARS-CoV-2 helicase at single-nucleotide resolution |
Sinduja K Marx, Keith J Mickolajczyk, Jonathan M Craig, Christopher A Thomas, Akira M Pfeffer, Sarah J Abell, Jessica D Carrasco, Michaela C Franzi, Jesse R Huang, Hwanhee C Kim, Henry Brinkerhoff, Tarun M Kapoor, Jens H Gundlach, Andrew H Laszlo |
| 19 |
[GO] |
2023―Jul―28 |
Correction to ‘COVID19db: a comprehensive database platform to discover potential drugs and targets of COVID-19 at whole transcriptomic scale’ |
|
| 20 |
[GO] |
2023―Jul―28 |
SARS-CoV-2 NSP1 induces mRNA cleavages on the ribosome |
Yann Tardivat, Piotr Sosnowski, Antonin Tidu, Eric Westhof, Gilbert Eriani, Franck Martin |
| 21 |
[GO] |
2023―Jun―01 |
Nsp14 of SARS-CoV-2 inhibits mRNA processing and nuclear export by targeting the nuclear cap-binding complex |
Jun Katahira, Tatsuya Ohmae, Mayo Yasugi, Ryosuke Sasaki, Yumi Itoh, Tomoko Kohda, Miki Hieda, Masami Yokota Hirai, Toru Okamoto, Yoichi Miyamoto |
| 22 |
[GO] |
2023―May―17 |
nCoVDock2: a docking server to predict the binding modes between COVID-19 targets and its potential ligands |
Kai Liu, Xufeng Lu, Hang Shi, Xiaojun Xu, Ren Kong, Shan Chang |
| 23 |
[GO] |
2023―Apr―28 |
Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease |
Andre Schutzer Godoy, Aline Minalli Nakamura, Alice Douangamath, Yun Song, Gabriela Dias Noske, Victor Oliveira Gawriljuk, Rafaela Sachetto Fernandes, Humberto D Muniz Pereira, Ketllyn Irene Zagato Oliveira, Daren Fearon, Alexandre Dias, Tobias Krojer, Michael Fairhead, Alisa Powell, Louise Dunnet, Jose Brandao-Neto, Rachael Skyner, Rod Chalk, Dávid Bajusz, Miklós Bege, Anikó Borbás, György Miklós Keserű, Frank von Delft, Glaucius Oliva |
| 24 |
[GO] |
2023―Mar―17 |
A hybrid structure determination approach to investigate the druggability of the nucleocapsid protein of SARS-CoV-2 |
Giacomo Padroni, Maria Bikaki, Mihajlo Novakovic, Antje C Wolter, Simon H Rüdisser, Alvar D Gossert, Alexander Leitner, Frederic H-T Allain |
| 25 |
[GO] |
2022―Dec―22 |
Interfering with nucleotide excision by the coronavirus 3′-to-5′ exoribonuclease |
Rukesh Chinthapatla, Mohamad Sotoudegan, Pankaj Srivastava, Thomas K Anderson, Ibrahim M Moustafa, Kellan T Passow, Samantha A Kennelly, Ramkumar Moorthy, David Dulin, Joy Y Feng, Daniel A Harki, Robert N Kirchdoerfer, Craig E Cameron, Jamie J Arnold |
| 26 |
[GO] |
2022―Dec―20 |
Correction to ‘LitCovid in 2022: an information resource for the COVID-19 literature’ |
|
| 27 |
[GO] |
2022―Dec―20 |
Cis-mediated interactions of the SARS-CoV-2 frameshift RNA alter its conformations and affect function |
Lukas Pekarek, Matthias M Zimmer, Anne-Sophie Gribling-Burrer, Stefan Buck, Redmond Smyth, Neva Caliskan |
| 28 |
[GO] |
2022―Dec―19 |
Structural domains of SARS-CoV-2 nucleocapsid protein coordinate to compact long nucleic acid substrates |
Michael Morse, Jana Sefcikova, Ioulia Rouzina, Penny J Beuning, Mark C Williams |
| 29 |
[GO] |
2022―Dec―13 |
Cellular APOBEC3A deaminase drives mutations in the SARS-CoV-2 genome |
Yoshihiro Nakata, Hirotaka Ode, Mai Kubota, Takaaki Kasahara, Kazuhiro Matsuoka, Atsuko Sugimoto, Mayumi Imahashi, Yoshiyuki Yokomaku, Yasumasa Iwatani |
| 30 |
[GO] |
2022―Dec―12 |
Crystal structures and fragment screening of SARS-CoV-2 NSP14 reveal details of exoribonuclease activation and mRNA capping and provide starting points for antiviral drug development |
Nergis Imprachim, Yuliana Yosaatmadja, Joseph A Newman |
| 31 |
[GO] |
2022―Nov―19 |
LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2 |
He Zhang, Sizhen Li, Liang Zhang, David H Mathews, Liang Huang |
| 32 |
[GO] |
2022―Oct―21 |
COMBATdb: a database for the COVID-19 Multi-Omics Blood ATlas |
Dapeng Wang, Vinod Kumar, Katie L Burnham, Alexander J Mentzer, Brian D Marsden, Julian C Knight |
| 33 |
[GO] |
2022―Oct―19 |
LitCovid in 2022: an information resource for the COVID-19 literature |
Qingyu Chen, Alexis Allot, Robert Leaman, Chih-Hsuan Wei, Elaheh Aghaarabi, John J Guerrerio, Lilly Xu, Zhiyong Lu |
| 34 |
[GO] |
2022―Sep―16 |
CovInter: interaction data between coronavirus RNAs and host proteins |
Kuerbannisha Amahong, Wei Zhang, Ying Zhou, Song Zhang, Jiayi Yin, Fengcheng Li, Hongquan Xu, Tianci Yan, Zixuan Yue, Yuhong Liu, Tingjun Hou, Yunqing Qiu, Lin Tao, Lianyi Han, Feng Zhu |
| 35 |
[GO] |
2022―Jul―24 |
Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures |
Christine A Roden, Yifan Dai, Catherine A Giannetti, Ian Seim, Myungwoon Lee, Rachel Sealfon, Grace A McLaughlin, Mark A Boerneke, Christiane Iserman, Samuel A Wey, Joanne L Ekena, Olga G Troyanskaya, Kevin M Weeks, Lingchong You, Ashutosh Chilkoti, Amy S Gladfelter |
| 36 |
[GO] |
2022―Jul―18 |
Cap-independent translation and a precisely located RNA sequence enable SARS-CoV-2 to control host translation and escape anti-viral response |
Boris Slobodin, Urmila Sehrawat, Anastasia Lev, Daniel Hayat, Binyamin Zuckerman, Davide Fraticelli, Ariel Ogran, Amir Ben-Shmuel, Elad Bar-David, Haim Levy, Igor Ulitsky, Rivka Dikstein |
| 37 |
[GO] |
2022―Jul―08 |
Flipped over U: structural basis for dsRNA cleavage by the SARS-CoV-2 endoribonuclease |
Meredith N Frazier, Isha M Wilson, Juno M Krahn, Kevin John Butay, Lucas B Dillard, Mario J Borgnia, Robin E Stanley |
| 38 |
[GO] |
2022―Jun―17 |
Body temperature variation controls pre-mRNA processing and transcription of antiviral genes and SARS-CoV-2 replication |
Bruna Los, Marco Preußner, Kathrin Eschke, Ricardo Martin Vidal, Azza Abdelgawad, Didrik Olofsson, Sandra Keiper, Margarida Paulo-Pedro, Alica Grindel, Stefan Meinke, Jakob Trimpert, Florian Heyd |
| 39 |
[GO] |
2021―Nov―08 |
SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions |
Mariona Torrens-Fontanals, Alejandro Peralta-García, Carmine Talarico, Ramon Guixà-González, Toni Giorgino, Jana Selent |
| 40 |
[GO] |
2021―Jun―23 |
Correction to ‘Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy’ |
Anna Wacker, Julia E Weigand, Sabine R Akabayov, Nadide Altincekic, Jasleen Kaur Bains, Elnaz Banijamali, Oliver Binas, Jesus Castillo-Martinez, Erhan Cetiner, Betül Ceylan, Liang-Yuan Chiu, Jesse Davila-Calderon, Karthikeyan Dhamotharan, Elke Duchardt-Ferner, Jan Ferner, Lucio Frydman, Boris Fürtig, José Gallego, J Tassilo Grün, Carolin Hacker, Christina Haddad, Martin Hähnke, Martin Hengesbach, Fabian Hiller, Katharina F Hohmann, Daniel Hymon, Vanessa de Jesus, Henry Jonker, Heiko Keller, Bozana Knezic, Tom Landgraf, Frank Löhr, Le Luo, Klara R Mertinkus, Christina Muhs, Mihajlo Novakovic, Andreas Oxenfarth, Martina Palomino-Schätzlein, Katja Petzold, Stephen A Peter, Dennis J Pyper, Nusrat S Qureshi, Magdalena Riad, Christian Richter, Krishna Saxena, Tatjana Schamber, Tali Scherf, Judith Schlagnitweit, Andreas Schlundt, Robbin Schnieders, Harald Schwalbe, Alvaro Simba-Lahuasi5, Sridhar Sreeramulu, Elke Stirnal, Alexey Sudakov, Jan-Niklas Tants, Blanton S Tolbert, Jennifer Vögele, Lena Weiß, Julia Wirmer-Bartoschek, Maria A Wirtz Martin, Jens Wöhnert, Heidi Zetzsche |
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