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COVID answers in Scientific Journals all over the world

American Society for Microbiology: Microbiology Resource Announcements
  original article Date Title Authors   All Authors
1 [GO] 2021―Jul―15 Coding-Complete Genome Sequences of 11 SARS-CoV-2 B.1.1.7 and B.1.351 Variants from Metro Manila, Philippines John Mark Velasco, Piyawan Chinnawirotpisan, Maria Theresa Valderama, Khajohn Joonlasak, Wudtichai Manasatienkij, Angkana Huang, et al. (+9)
2 [GO] 2021―Jul―15 Genome Sequences of 15 SARS-CoV-2 Sublineage B.1.617.2 Strains in Bangladesh Mokibul Hassan Afrad, Manjur Hossain Khan, Sadia Isfat Ara Rahman, Omar Hamza Bin Manjur, Mohabbat Hossain, Ahmed Nawsher Alam, et al. (+7)
3 [GO] 2021―Jul―08 Genome Sequences of Two Novel Coronavirus (SARS-CoV-2) Isolates from Dhaka, Bangladesh M. Abdul Matin, Abdullah Al Nahid, Bishajit Sarkar, M. Asad Ullah, Yusha Araf, Nihad Adnan, et al. (+3)
4 [GO] 2021―Jul―08 Genome Sequence of a SARS-CoV-2 P.1 Variant of Concern (20J/501Y.V3) from Bangladesh M. Murshed Hasan Sarkar, Mohammad Fazle Alam Rabbi, Shahina Akter, Tanjina Akhtar Banu, Barna Goswami, Iffat Jahan, et al. (+12)
5 [GO] 2021―Jul―01 New SARS-CoV-2 Variant from Jordan Lo’ai Alanagreh, Mustafa Ababneh, Abdel-Ellah Al-Shudifat, Mai Ajlouny, Hanan Abu-Shaikh, Foad Alzoughool, et al. (+4)
6 [GO] 2021―Jun―11 Accessible and Validated Processing of SARS-CoV-2 from Wastewater Nicole C. Rondeau, Oliver J. Rose, Lina A. Ariyan, Brian J. Mailloux, JJ L. Miranda, Irene L. G. Newton
7 [GO] 2021―Jun―11 Genome Sequences of SARS-CoV-2 P.1 (Variant of Concern) and P.2 (Variant of Interest) Identified in Uruguay Yanina Panzera, Natalia Goñi, Lucía Calleros, Natalia Ramos, Sandra Frabasile, Ana Marandino, et al. (+15)
8 [GO] 2021―Jun―11 Complete Coding Genome Sequence of a Novel Porcine Reproductive and Respiratory Syndrome Virus 2 Restriction Fragment Length Polymorphism 1-4-4 Lineage 1C Variant Identified in Iowa, USA Giovani Trevisan, Ganwu Li, Cesar A. A. Moura, Katie Coleman, Pete Thomas, Jianqiang Zhang, et al. (+4)
9 [GO] 2021―Jun―09 Metatranscriptomic Analysis Reveals SARS-CoV-2 Mutations in Wastewater of the Frankfurt Metropolitan Area in Southern Germany Shelesh Agrawal, Laura Orschler, Susanne Lackner, Simon Roux
10 [GO] 2021―May―30 Genome Sequencing Identified a SARS-CoV-2 Lineage B.1.1.7 Strain with a High Number of Mutations from Dhaka, Bangladesh Razib Mazumder, Ahmed Abdullah, Mohammad Enayet Hossain, M. Mahfuzur Rahman, Omar Hamza Bin Manjur, Mustafizur Rahman, et al. (+2)
11 [GO] 2021―May―28 Genome Sequence of a SARS-CoV-2 VUI 202012/01 Strain Identified from a Patient Returning from London, England, to the Apulia Region of Italy Daniela Loconsole, Anna Sallustio, Marisa Accogli, Francesca Centrone, Loredana Capozzi, Laura Del Sambro, et al. (+3)
12 [GO] 2021―May―19 Complete Genome Sequence of a SARS-CoV-2 Strain Sampled in Morocco in May 2020, Obtained Using Sanger Sequencing Abderrazak Rfaki, Nadia Touil, Mouhssine Hemlali, Sanaâ Alaoui Amine, Marouane Melloul, Moulay Abdelaziz El Alaoui, et al. (+6)
13 [GO] 2021―May―05 Detection and Genome Sequencing of SARS-CoV-2 Variants Belonging to the B.1.1.7 Lineage in the Philippines Francis A. Tablizo, Cynthia P. Saloma, Marc Jerrone R. Castro, Kenneth M. Kim, Maria Sofia L. Yangzon, Carlo M. Lapid, et al. (+27)
14 [GO] 2021―Apr―21 Report of SARS-CoV-2 B1.1.7 Lineage in Morocco Mouna Ouadghiri, Tarik Aanniz, Abdelomunim Essabbar, Myriam Seffar, Hakima Kabbaj, Ghizlane El Amin, et al. (+5)
15 [GO] 2021―Apr―14 Whole-Genome Sequence of Avian coronavirus from a 15-Year-Old Sample Confirms Evidence of GA08-like Strain Circulation 4 Years Prior to Its First Reported Outbreak Iryna V. Goraichuk, James F. Davis, Arun B. Kulkarni, Claudio L. Afonso, David L. Suarez, Jelle Matthijnssens
16 [GO] 2021―Apr―14 Genome Sequences of Three SARS-CoV-2 ORF7a Deletion Variants Obtained from Patients in Hong Kong Herman Tse, Sally Cheuk-Ying Wong, Ka-Fai Ip, Vincent Chi-Chung Cheng, Kelvin Kai-Wang To, David Christopher Lung, et al. (+2)
17 [GO] 2021―Apr―14 Genome Sequences of Five SARS-CoV-2 Variants from Mumbai, India, Obtained by Nanopore Sequencing Kayzad Nilgiriwala, Ayan Mandal, Grishma Patel, Tejal Mestry, Smriti Vaswani, Ambreen Shaikh, et al. (+7)
18 [GO] 2021―Mar―31 Genome Sequence of a SARS-CoV-2 Strain from a COVID-19 Clinical Sample from the Khagrachari District of Bangladesh M. Imranul Hoq, Robiul Hasan Bhuiyan, M. Khondakar Raziur Rahman, Imam Hossen, Sajib Rudra, M. Arif Hossain, et al. (+5)
19 [GO] 2021―Mar―31 Coding-Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Gilgit, Pakistan Aneela Javed, Saifullah Khan Niazi, Eijaz Ghani, Maham Yamin, Muhammad Saqib, Hussnain A. Janjua, et al. (+2)
20 [GO] 2021―Mar―24 Genome Sequences of Three SARS-CoV-2 P.1 Strains Identified from Patients Returning from Brazil to Italy Emiliano Delli Compagni, Lucija Jurisic, Marialuigia Caporale, Federico Bacà, Silvia Scialabba, Sara Fanì, et al. (+19)
21 [GO] 2021―Mar―24 Near-Complete Genome Sequence of a SARS-CoV-2 VOC 202012/01 Strain in Peru C. Padilla-Rojas, L. Barcena-Flores, K. Vega-Chozo, M. Galarza-Perez, H. Bailon-Calderon, P. Lope-Pari, et al. (+5)
22 [GO] 2021―Mar―17 First Report of a SARS-CoV-2 Genome Sequence with a Spike His69-Val70 Deletion and an Asn439Lys Mutation in Morocco Tarik Aanniz, Mouna Ouadghiri, Mohammed Amine Bendahou, Mohammed Walid Chemao-Elfihri, Mohamed Chenaoui, Hanae Dakka, et al. (+8)
23 [GO] 2021―Mar―10 Coding-Complete Genome Sequences and Mutation Profiles of Nine SARS-CoV-2 Strains Detected from COVID-19 Patients in Bangladesh Nihad Adnan, Mohib Ullah Khondoker, M. Shaminur Rahman, M. Firoz Ahmed, Shahana Sharmin, Nadim Sharif, et al. (+15)
24 [GO] 2021―Mar―10 Coding-Complete Genome Sequence and Phylogenetic Relatedness of a SARS-CoV-2 Strain Detected in March 2020 in Cameroon Richard Njouom, Serge Alain Sadeuh-Mba, Jules Tchatchueng, Moussa Moïse Diagne, Ndongo Dia, Paul Alain Ngoupo Tagnouokam, et al. (+10)
25 [GO] 2021―Mar―03 Identification of a SARS-CoV-2 Lineage B1.1.7 Virus in New York following Return Travel from the United Kingdom Leonardo C. Caserta, Patrick K. Mitchell, Elizabeth Plocharczyk, Diego G. Diel, John J. Dennehy
26 [GO] 2021―Feb―24 In-Frame 12-Nucleotide Deletion within Open Reading Frame 3a in a SARS-CoV-2 Strain Isolated from a Patient Hospitalized with COVID-19 John A. Lednicky, Kartikeya Cherabuddi, Massimiliano S. Tagliamonte, Maha A. Elbadry, Kuttichantran Subramaniam, Thomas B. Waltzek, et al. (+2)
27 [GO] 2021―Feb―24 Genome Sequence of a SARS-CoV-2 Strain from Bangladesh That Is Nearly Identical to United Kingdom SARS-CoV-2 Variant B.1.1.7 Mohammad Enayet Hossain, M. Mahfuzur Rahman, M. Shaheen Alam, Yeasir Karim, Ananya Ferdous Hoque, Sezanur Rahman, et al. (+3)
28 [GO] 2021―Feb―10 Coding-Complete Genome Sequences of NITMA1086 and NITMA1139, Two SARS-CoV-2 Isolates from Belagavi District, Karnataka State, India, Harboring the D614G Mutation Ishwar Singh, Umashankar Vetrivel, D. R. Harish, Debprasad Chattophadhyay, John J. Dennehy
29 [GO] 2021―Jan―27 Genome Sequencing of a Novel Coronavirus SARS-CoV-2 Isolate from Iraq Nihad A. M. Al-Rashedi, Danilo Licastro, Sreejith Rajasekharan, Simeone Dal Monego, Alessandro Marcello, Murad G. Munahi, et al. (+9)
30 [GO] 2021―Jan―27 Genome Sequences of 10 SARS-CoV-2 Viral Strains Obtained by Nanopore Sequencing of Nasopharyngeal Swabs in Malta Manuele Biazzo, Silvia Madeddu, Elfath Elnifro, Tessabella Sultana, Josie Muscat, Christian A. Scerri, et al. (+3)
31 [GO] 2021―Jan―20 Expression of Concern for Sah et al., “Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal”
32 [GO] 2021―Jan―19 Genomic Sequences and Analysis of Five SARS-CoV-2 Variants Obtained from Patients in Lambayeque, Peru Franklin Rómulo Aguilar-Gamboa, Luis Alberto Salcedo-Mejía, Luis Miguel Serquén-López, Marco Enrique Mechan-Llontop, Percy Omar Tullume-Vergara, Juan José Bonifacio-Briceño, et al. (+4)
33 [GO] 2021―Jan―06 Genome Sequences of Two GH Clade SARS-CoV-2 Strains Isolated from Patients with COVID-19 in South Korea Minwoo Kim, Youn-Jung Lee, Jae Sun Yoon, Jin Young Ahn, Jung Ho Kim, Jun Yong Choi, et al. (+2)
34 [GO] 2021―Jan―06 Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing Piroon Jenjaroenpun, Visanu Wanchai, Kikumi D. Ono-Moore, Jennifer Laudadio, Laura P. James, Sean H. Adams, et al. (+5)
35 [GO] 2021―Jan―06 Mutation Profile of SARS-CoV-2 Genome Sequences Originating from Eight Israeli Patient Isolates Galia Zaide, Inbar Cohen-Gihon, Ofir Israeli, Dana Stein, Ohad Shifman, Shay Weiss, et al. (+5)
36 [GO] 2020―Oct―21 Coding-Complete Genome Sequences of 23 SARS-CoV-2 Samples from the Philippines John Mark Velasco, Piyawan Chinnawirotpisan, Khajohn Joonlasak, Wudtichai Manasatienkij, Angkana Huang, Maria Theresa Valderama, et al. (+11)
37 [GO] 2020―Oct―07 Metagenomics of Wastewater Influent from Southern California Wastewater Treatment Facilities in the Era of COVID-19 Jason A. Rothman, Theresa B. Loveless, Madison L. Griffith, Joshua A. Steele, John F. Griffith, Katrine L. Whiteson, Simon Roux
38 [GO] 2020―Oct―07 Metagenome of a Bronchoalveolar Lavage Fluid Sample from a Confirmed COVID-19 Case in Quito, Ecuador, Obtained Using Oxford Nanopore MinION Technology Sully Márquez, Belén Prado-Vivar, Juan José Guadalupe, Bernardo Gutierrez, Mónica Becerra-Wong, Manuel Jibaja, et al. (+8)
39 [GO] 2020―Sep―23 Whole-Genome Sequence of SARS-CoV-2 Isolate Siena-1/2020 Maria Grazia Cusi, David Pinzauti, Claudia Gandolfo, Gabriele Anichini, Gianni Pozzi, Francesco Santoro, Simon Roux
40 [GO] 2020―Sep―23 Coding-Complete Genome Sequences of Three SARS-CoV-2 Strains from Bangladesh Shahina Akter, Tanjina Akhtar Banu, Barna Goswami, Eshrar Osman, Mohammad Samir Uzzaman, M. Ahashan Habib, et al. (+15)
41 [GO] 2020―Sep―14 Four SARS-CoV-2 Genome Sequences from Late April in Stockholm, Sweden, Reveal a Rare Mutation in the Spike Protein Tatiany Aparecida Teixeira Soratto, Hamid Darban, Annelie Bjerkner, Maarten Coorens, Jan Albert, Tobias Allander, et al. (+2)
42 [GO] 2020―Aug―05 Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology Meriem Laamarti, M. W. Chemao-Elfihri, Souad Kartti, Rokia Laamarti, Loubna Allam, Mouna Ouadghiri, et al. (+17)
43 [GO] 2020―Jul―29 Reports of Coding-Complete Genome Sequences of Five 2019 Novel Coronavirus (SARS-CoV-2) Strains Isolated in Bangladesh M. Imran Khan, Kazi Nadim Hasan, Abu Sufian, M. Bayejid Hosen, Mohammed Nafiz Imtiaz Polol, M. Abdul Khaleque, et al. (+7)
44 [GO] 2020―Jul―29 SARS-CoV-2 Genome Sequence from Morocco, Obtained Using Ion AmpliSeq Technology Farah Jouali, Nabila Marchoudi, Fatima Zahra El Ansari, Yassine Kasmi, Mohamed Chenaoui, Aissam El Aliani, et al. (+6)
45 [GO] 2020―Jul―29 Genome Sequences of SARS-CoV-2 Strains Detected in Hong Kong Chun Hang Au, Wai Sing Chan, Ho Yin Lam, Dona N. Ho, Simon Y. M. Lam, Jonpaul S. T. Zee, et al. (+3)
46 [GO] 2020―Jul―08 Coding-Complete Genome Sequences of Two SARS-CoV-2 Isolates from Early Manifestations of COVID-19 in Israel Inbar Cohen-Gihon, Ofir Israeli, Ohad Shifman, Dana Stein, Hagit Achdout, Shay Weiss, et al. (+9)
47 [GO] 2020―Jul―08 Coding-Complete Genome Sequence of SARS-CoV-2 Isolate from Bangladesh by Sanger Sequencing M. Moniruzzaman, Mohammad Uzzal Hossain, M. Nazrul Islam, M. Hadisur Rahman, Irfan Ahmed, Tahia Anan Rahman, et al. (+7)
48 [GO] 2020―Jul―01 Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Morocco Sanaâ Lemriss, Amal Souiri, Narjis Amar, Nabil Lemzaoui, Omar Mestoui, Mohamed Labioui, et al. (+9)
49 [GO] 2020―Jul―01 Genome Sequencing of a Severe Acute Respiratory Syndrome Coronavirus 2 Isolate Obtained from a South African Patient with Coronavirus Disease 2019 Mushal Allam, Arshad Ismail, Zamantungwa T. H. Khumalo, Stanford Kwenda, Peter van Heusden, Ruben Cloete, et al. (+11)
50 [GO] 2020―Jun―24 Genome Sequence of SARS-CoV-2 Isolate Cali-01, from Colombia, Obtained Using Oxford Nanopore MinION Sequencing Diana Lopez-Alvarez, Beatriz Parra, Wilmer J. Cuellar, John J. Dennehy
51 [GO] 2020―Jun―10 Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh Senjuti Saha, Roly Malaker, Mohammad Saiful Islam Sajib, Md Hasanuzzaman, Hafizur Rahman, Zabed B. Ahmed, et al. (+13)
52 [GO] 2020―Jun―03 Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Northern Germany Susanne Pfefferle, Jiabin Huang, Dominik Nörz, Daniela Indenbirken, Marc Lütgehetmann, Lisa Oestereich, et al. (+5)
53 [GO] 2020―May―27 Complete Genome Sequence of SARS-CoV-2 in a Tiger from a U.S. Zoological Collection Leyi Wang, Patrick K. Mitchell, Paul P. Calle, Susan L. Bartlett, Denise McAloose, Mary Lea Killian, et al. (+11)
54 [GO] 2020―May―27 Coding-Complete Genome Sequences of Two SARS-CoV-2 Isolates from Egypt Ahmed Kandeil, Ahmed Mostafa, Rabeh El-Shesheny, Mahmoud Shehata, Wael H. Roshdy, Shymaa Showky Ahmed, et al. (+13)
55 [GO] 2020―May―13 Complete Genome Sequences of SARS-CoV-2 Strains Detected in Malaysia Yoong Min Chong, I-Ching Sam, Sasheela Ponnampalavanar, Sharifah Faridah Syed Omar, Adeeba Kamarulzaman, Vijayan Munusamy, et al. (+7)
56 [GO] 2020―May―06 Near-Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Peru Carlos Padilla-Rojas, Priscila Lope-Pari, Karolyn Vega-Chozo, Johanna Balbuena-Torres, Omar Caceres-Rey, Henri Bailon-Calderon, et al. (+3)
57 [GO] 2020―Mar―11 Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal Ranjit Sah, Alfonso J. Rodriguez-Morales, Runa Jha, Daniel K. W. Chu, Haogao Gu, Malik Peiris, et al. (+10)
58 [GO] 2020―Feb―26 Complete Genome Sequence of Avian Coronavirus Strain GA08 (GI-27 Lineage) Iryna V. Goraichuk, James F. Davis, Arun B. Kulkarni, Claudio L. Afonso, David L. Suarez, Simon Roux
59 [GO] 2020―Feb―26 A 25-Year-Old Sample Contributes the Complete Genome Sequence of Avian Coronavirus Vaccine Strain ArkDPI, Reisolated from Commercial Broilers in the United States Iryna V. Goraichuk, James F. Davis, Arun B. Kulkarni, Claudio L. Afonso, David L. Suarez, Simon Roux
60 [GO] 2020―Feb―19 Complete Genome Sequences of Five Human Coronavirus NL63 Strains Causing Respiratory Illness in Hospitalized Children in China Lu Zhang, Mian Gan, Zhaoyong Zhang, Xin Li, Wenkuan Liu, Airu Zhu, et al. (+8)


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