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Original Artikel |
Datum |
Titel |
Autoren Alle Autoren |
| 1 |
[GO] |
2024―Jun―27 |
CMAPLE: efficient phylogenetic inference in the pandemic era |
Nhan Ly-Trong, Chris Bielow, Nicola De Maio, Bui Quang Minh, Andrey Rzhetsky |
| 2 |
[GO] |
2023―Sep―29 |
Correction to: Recovery of Deleted Deep Sequencing Data Sheds More Light on the Early Wuhan SARS-CoV-2 Epidemic |
|
| 3 |
[GO] |
2023―Sep―19 |
A proofreading mutation with an allosteric effect allows a cluster SARS-CoV-2 viruses to rapidly evolve |
Andrew H Mack, Georgina Menzies, Alex Southgate, D Dafydd Jones, Thomas R Connor, Thomas Leitner |
| 4 |
[GO] |
2023―Sep―12 |
Intra- vs. inter-host evolution of SARS-CoV-2 driven by uncorrelated selection -The evolution thwarted |
Mei Hou, Jingrong Shi, Zanke Gong, Haijun Wen, Yun Lan, Xizi Deng, et al. (+8) Qinghong Fan, Jiaojiao Li, Mengling Jiang, Xiaoping Tang, Chung-I Wu, Feng Li, Yongsen Ruan, Weiwei Zhai |
| 5 |
[GO] |
2023―Apr―13 |
Adaptive evolution of the Spike protein in coronaviruses |
Xiaolu Tang, Zhaohui Qian, Xuemei Lu, Jian Lu, Daniel Falush |
| 6 |
[GO] |
2023―Apr―11 |
Evolution of the SARS-CoV-2 mutational spectrum |
Jesse D Bloom, Annabel C Beichman, Richard A Neher, Kelley Harris, Crystal Hepp |
| 7 |
[GO] |
2023―Mrz―02 |
Global dynamics of porcine enteric coronavirus PEDV epidemiology, evolution and transmission |
Hao Zhang, Chuangchao Zou, Ouyang Peng, Usama Ashraf, Qiuping Xu, Lang Gong, et al. (+11) Baochao Fan, Yun Zhang, Zhichao Xu, Chunyi Xue, Xiaona Wei, Qingfeng Zhou, Xiaoyan Tian, Hanqin Shen, Bin Li, Xiangbin Zhang, Yongchang Cao |
| 8 |
[GO] |
2022―Aug―08 |
Contrasting patterns in the early stage of SARS-CoV-2 evolution between humans and minks |
Jui Hung Tai, Hsiao Yu Sun, Yi Cheng Tseng, Guanghao Li, Sui Yuan Chang, Shiou Hwei Yeh, et al. (+4) Pei Jer Chen, Shu Miaw Chaw, Hurng Yi Wang, Meredith Yeager |
| 9 |
[GO] |
2022―Jul―11 |
Variational phylodynamic inference using pandemic-scale data |
Caleb Ki, Jonathan Terhorst, Rebekah Rogers |
| 10 |
[GO] |
2022―Jun―14 |
Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses |
Chuanyi Zhang, Palash Sashittal, Michael Xiang, Yichi Zhang, Ayesha Kazi, Mohammed El-Kebir, Thomas Leitner |
| 11 |
[GO] |
2022―Mrz―01 |
The runaway evolution of SARS-CoV-2 leading to the highly evolved Delta strain |
Yongsen Ruan, Mei Hou, Xiaolu Tang, Xionglei He, Xuemei Lu, Jian Lu, et al. (+2) Chung-I Wu, Haijun Wen |
| 12 |
[GO] |
2022―Jan―13 |
The emergence of SARS-CoV-2 variants of concern is driven by acceleration of the substitution rate |
John H Tay, Ashleigh F Porter, Wytamma Wirth, Sebastian Duchene, Thomas Leitner |
| 13 |
[GO] |
2021―Sep―14 |
Corrigendum to: Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design |
Alan M Rice, Atahualpa Castillo Morales, Alexander T Ho, Christine Mordstein, Stefanie Mühlhausen, Samir Watson, et al. (+4) Laura Cano, Bethan Young, Grzegorz Kudla, Laurence D Hurst |
| 14 |
[GO] |
2021―Sep―08 |
Stepwise evolution and exceptional conservation of ORF1a/b overlap in coronaviruses |
Han Mei, Sergei Kosakovsky Pond, Anton Nekrutenko, Aya Takahashi |
| 15 |
[GO] |
2021―Sep―01 |
A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees |
Jakob McBroome, Bryan Thornlow, Angie S Hinrichs, Alexander Kramer, Nicola De Maio, Nick Goldman, et al. (+4) David Haussler, Russell Corbett-Detig, Yatish Turakhia, Jian Lu |
| 16 |
[GO] |
2021―Aug―14 |
Recovery of deleted deep sequencing data sheds more light on the early Wuhan SARS-CoV-2 epidemic |
Jesse D Bloom, Rasmus Nielsen |
| 17 |
[GO] |
2021―Feb―18 |
Comparative genomics reveals early emergence and biased spatio-temporal distribution of SARS-CoV-2 |
Matteo Chiara, David S Horner, Carmela Gissi, Graziano Pesole, Li Liu |
| 18 |
[GO] |
2020―Dez―30 |
Population dynamics and structural effects at short and long range support the hypothesis of the selective advantage of the G614 SARS-Cov2 spike variant |
Emiliano Trucchi, Paolo Gratton, Fabrizio Mafessoni, Stefano Motta, Francesco Cicconardi, Filippo Mancia, et al. (+4) Giorgio Bertorelle, Ilda D’Annessa, Daniele Di Marino, Jian Lu |
| 19 |
[GO] |
2020―Dez―07 |
Assessing uncertainty in the rooting of the SARS-CoV-2 phylogeny |
Lenore Pipes, Hongru Wang, John P Huelsenbeck, Rasmus Nielsen, Harmit Malik |
| 20 |
[GO] |
2020―Nov―02 |
Characterizing transcriptional regulatory sequences in coronaviruses and their role in recombination |
Yiyan Yang, Wei Yan, A Brantley Hall, Xiaofang Jiang, Rasmus Nielsen |
| 21 |
[GO] |
2020―Sep―15 |
Potential pathogenicity determinants identified from structural proteomics of SARS-CoV and SARS-CoV-2 |
Erica T Prates, Michael R Garvin, Mirko Pavicic, Piet Jones, Manesh Shah, Omar Demerdash, et al. (+4) B Kirtley Amos, Armin Geiger, Daniel Jacobson, Harmit Malik |
| 22 |
[GO] |
2020―Apr―07 |
Extreme genomic CpG deficiency in SARS-CoV-2 and evasion of host antiviral defense |
Xuhua Xia, Sudhir Kumar |
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