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COVID answers in Scientific Journals all over the world


173 Results       Page 1

 [1] 
Public Library of Science: PLoS Computational Biology
  original article Date Title Authors   Max. 6 Authors
1 [GO] 2024―Mar―07 Mechanistic insights into ligand dissociation from the SARS-CoV-2 spike glycoprotein Timothy Hasse, Esra Mantei, Rezvan Shahoei, Shristi Pawnikar, Jinan Wang, Yinglong Miao, Yu-ming M. Huang, Alexander MacKerell
2 [GO] 2024―Jan―31 Modeling geographic vaccination strategies for COVID-19 in Norway Louis Yat Hin Chan, Gunnar Rø, Jørgen Eriksson Midtbø, Francesco Di Ruscio, Sara Sofie Viksmoen Watle, Lene Kristine Juvet, Jasper Littmann, Preben Aavitsland, Karin Maria Nygård, Are Stuwitz Berg, Geir Bukholm, Anja Bråthen Kristoffersen, Kenth Engø-Monsen, Solveig Engebretsen, David Swanson, Alfonso Diz-Lois Palomares, Jonas Christoffer Lindstrøm, Arnoldo Frigessi, Birgitte Freiesleben de Blasio, Claudio José Struchiner
3 [GO] 2024―Jan―29 Estimation of introduction and transmission rates of SARS-CoV-2 in a prospective household study Michiel van Boven, Christiaan H. van Dorp, Ilse Westerhof, Vincent Jaddoe, Valerie Heuvelman, Liesbeth Duijts, Elandri Fourie, Judith Sluiter-Post, Marlies A. van Houten, Paul Badoux, Sjoerd Euser, Bjorn Herpers, Dirk Eggink, Marieke de Hoog, Trisja Boom, Joanne Wildenbeest, Louis Bont, Ganna Rozhnova, Marc J. Bonten, Mirjam E. Kretzschmar, Patricia Bruijning-Verhagen, Tom Britton
4 [GO] 2024―Jan―25 Mutational signature dynamics indicate SARS-CoV-2’s evolutionary capacity is driven by host antiviral molecules Kieran D. Lamb, Martha M. Luka, Megan Saathoff, Richard J. Orton, My V. T. Phan, Matthew Cotten, Ke Yuan, David L. Robertson, Roger Dimitri Kouyos
5 [GO] 2024―Jan―19 PandoGen: Generating complete instances of future SARS-CoV-2 sequences using Deep Learning Anand Ramachandran, Steven S. Lumetta, Deming Chen, Samuel V. Scarpino
6 [GO] 2024―Jan―18 Modelling disease mitigation at mass gatherings: A case study of COVID-19 at the 2022 FIFA World Cup Martin Grunnill, Julien Arino, Zachary McCarthy, Nicola Luigi Bragazzi, Laurent Coudeville, Edward W. Thommes, Amine Amiche, Abbas Ghasemi, Lydia Bourouiba, Mohammadali Tofighi, Ali Asgary, Mortaza Baky-Haskuee, Jianhong Wu, Eric HY Lau
7 [GO] 2024―Jan―08 Near-term forecasting of Covid-19 cases and hospitalisations in Aotearoa New Zealand Michael J. Plank, Leighton Watson, Oliver J. Maclaren, Alex Perkins
8 [GO] 2023―Dec―22 Optimizing COVID-19 testing strategies on college campuses: Evaluation of the health and economic costs Kaitlyn E. Johnson, Remy Pasco, Spencer Woody, Michael Lachmann, Maureen Johnson-Leon, Darlene Bhavnani, Jessica Klima, A. David Paltiel, Spencer J. Fox, Lauren Ancel Meyers, Benjamin Althouse
9 [GO] 2023―Dec―21 An agent-based modeling approach for lung fibrosis in response to COVID-19 Mohammad Aminul Islam, Michael Getz, Paul Macklin, Ashlee N. Ford Versypt, Pamela K Kreeger
10 [GO] 2023―Nov―27 Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany Elisabeth K. Brockhaus, Daniel Wolffram, Tanja Stadler, Michael Osthege, Tanmay Mitra, Jonas M. Littek, Ekaterina Krymova, Anna J. Klesen, Jana S. Huisman, Stefan Heyder, Laura M. Helleckes, Matthias an der Heiden, Sebastian Funk, Sam Abbott, Johannes Bracher, Eric HY Lau
11 [GO] 2023―Nov―27 A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms Bastiaan R. Van der Roest, Martin C. J. Bootsma, Egil A. J. Fischer, Don Klinkenberg, Mirjam E. E. Kretzschmar, Claudio José Struchiner
12 [GO] 2023―Nov―27 Assessing the importance of demographic risk factors across two waves of SARS-CoV-2 using fine-scale case data Anthony J. Wood, Aeron R. Sanchez, Paul R. Bessell, Rebecca Wightman, Rowland R. Kao, Claudio José Struchiner
13 [GO] 2023―Nov―27 How effective were Australian Quarantine Stations in mitigating transmission aboard ships during the influenza pandemic of 1918-19? Punya Alahakoon, Peter G. Taylor, James M. McCaw, Claudio José Struchiner
14 [GO] 2023―Nov―13 Bayesian spatial modelling of localised SARS-CoV-2 transmission through mobility networks across England Thomas Ward, Mitzi Morris, Andrew Gelman, Bob Carpenter, William Ferguson, Christopher Overton, Martyn Fyles, Joseph T. Wu
15 [GO] 2023―Nov―08 A data-driven semi-parametric model of SARS-CoV-2 transmission in the United States John M. Drake, Andreas Handel, Éric Marty, Eamon B. O’Dea, Tierney O’Sullivan, Giovanni Righi, Andrew T. Tredennick, Gerardo Chowell
16 [GO] 2023―Oct―18 Combining the dynamic model and deep neural networks to identify the intensity of interventions during COVID-19 pandemic Mengqi He, Sanyi Tang, Yanni Xiao, Benjamin Althouse
17 [GO] 2023―Sep―18 Marginal effects of public health measures and COVID-19 disease burden in China: A large-scale modelling study Zengmiao Wang, Peiyi Wu, Lin Wang, Bingying Li, Yonghong Liu, Yuxi Ge, Ruixue Wang, Ligui Wang, Hua Tan, Chieh-Hsi Wu, Marko Laine, Henrik Salje, Hongbin Song, David S. Khoury
18 [GO] 2023―Sep―12 Evaluating the use of social contact data to produce age-specific short-term forecasts of SARS-CoV-2 incidence in England James D. Munday, Sam Abbott, Sophie Meakin, Sebastian Funk, Claudio José Struchiner
19 [GO] 2023―Sep―01 Evaluating the impact of test-trace-isolate for COVID-19 management and alternative strategies Kun Zhang, Zhichu Xia, Shudong Huang, Gui-Quan Sun, Jiancheng Lv, Marco Ajelli, Keisuke Ejima, Quan-Hui Liu, David S. Khoury
20 [GO] 2023―Sep―01 Dynamical modelling of viral infection and cooperative immune protection in COVID-19 patients Zhengqing Zhou, Dianjie Li, Ziheng Zhao, Shuyu Shi, Jianghua Wu, Jianwei Li, Jingpeng Zhang, Ke Gui, Yu Zhang, Qi Ouyang, Heng Mei, Yu Hu, Fangting Li, Adrianne L. Jenner
21 [GO] 2023―Aug―11 Collaborative nowcasting of COVID-19 hospitalization incidences in Germany Daniel Wolffram, Sam Abbott, Matthias an der Heiden, Sebastian Funk, Felix Günther, Davide Hailer, Stefan Heyder, Thomas Hotz, Jan van de Kassteele, Helmut Küchenhoff, Sören Müller-Hansen, Diellë Syliqi, Alexander Ullrich, Maximilian Weigert, Melanie Schienle, Johannes Bracher, James M McCaw
22 [GO] 2023―Aug―11 Influence of cell type specific infectivity and tissue composition on SARS-CoV-2 infection dynamics within human airway epithelium Benjamin Raach, Nils Bundgaard, Marika J. Haase, Jörn Starruß, Rocio Sotillo, Megan L. Stanifer, Frederik Graw, James R. Faeder
23 [GO] 2023―Aug―10 SARS-CoV-2 infection perturbs enhancer mediated transcriptional regulation of key pathways Yahel Yedidya, Daniel Davis, Yotam Drier, Shailendra Shivaji Gurav
24 [GO] 2023―Aug―09 Impact of variants of concern on SARS-CoV-2 viral dynamics in non-human primates Aurélien Marc, Romain Marlin, Flora Donati, Mélanie Prague, Marion Kerioui, Cécile Hérate, Marie Alexandre, Nathalie Dereuddre-bosquet, Julie Bertrand, Vanessa Contreras, Sylvie Behillil, Pauline Maisonnasse, Sylvie Van Der Werf, Roger Le Grand, Jérémie Guedj, Rustom Antia
25 [GO] 2023―Aug―07 Modeling the kinetics of the neutralizing antibody response against SARS-CoV-2 variants after several administrations of Bnt162b2 Quentin Clairon, Mélanie Prague, Delphine Planas, Timothée Bruel, Laurent Hocqueloux, Thierry Prazuck, Olivier Schwartz, Rodolphe Thiébaut, Jérémie Guedj, James R. Faeder
26 [GO] 2023―Jul―17 Development of Accurate Long-lead COVID-19 Forecast Wan Yang, Jeffrey Shaman, Benjamin Althouse
27 [GO] 2023―Jul―06 Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes Shaoke Lou, Mingjun Yang, Tianxiao Li, Weihao Zhao, Hannah Cevasco, Yucheng T. Yang, Mark Gerstein, Feng Fu
28 [GO] 2023―Jul―05 DAPTEV: Deep aptamer evolutionary modelling for COVID-19 drug design Cameron Andress, Kalli Kappel, Marcus Elbert Villena, Miroslava Cuperlovic-Culf, Hongbin Yan, Yifeng Li, Alexander MacKerell
29 [GO] 2023―Jun―28 Charting the spatial dynamics of early SARS-CoV-2 transmission in Washington state Tobias S. Brett, Shweta Bansal, Pejman Rohani, Daniel B Larremore
30 [GO] 2023―Jun―21 Learning from the past: A short term forecast method for the COVID-19 incidence curve Jean-David Morel, Jean-Michel Morel, Luis Alvarez, Virginia E. Pitzer
31 [GO] 2023―Jun―01 Disproportionate impacts of COVID-19 in a large US city Spencer J. Fox, Emily Javan, Remy Pasco, Graham C. Gibson, Briana Betke, José L. Herrera-Diestra, Spencer Woody, Kelly Pierce, Kaitlyn E. Johnson, Maureen Johnson-León, Michael Lachmann, Lauren Ancel Meyers, Claudio José Struchiner
32 [GO] 2023―May―19 Modelling the structures of frameshift-stimulatory pseudoknots from representative bat coronaviruses Rohith Vedhthaanth Sekar, Patricia J. Oliva, Michael T. Woodside, Tamar Schlick
33 [GO] 2023―May―12 Understanding the impact of mobility on COVID-19 spread: A hybrid gravity-metapopulation model of COVID-19 Sarafa A. Iyaniwura, Notice Ringa, Prince A. Adu, Sunny Mak, Naveed Z. Janjua, Michael A. Irvine, Michael Otterstatter, Virginia E. Pitzer
34 [GO] 2023―May―05 Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients Megan M. Sperry, Tomiko T. Oskotsky, Ivana Marić, Shruti Kaushal, Takako Takeda, Viktor Horvath, Rani K. Powers, Melissa Rodas, Brooke Furlong, Mercy Soong, Pranav Prabhala, Girija Goyal, Kenneth E. Carlson, Ronald J. Wong, Idit Kosti, Brian L. Le, James Logue, Holly Hammond, Matthew Frieman, David K. Stevenson, Donald E. Ingber, Marina Sirota, Richard Novak, Teresa M. Przytycka
35 [GO] 2023―Apr―27 A high-frequency mobility big-data reveals how COVID-19 spread across professions, locations and age groups Chen Zhao, Jialu Zhang, Xiaoyue Hou, Chi Ho Yeung, An Zeng, Benjamin Althouse
36 [GO] 2023―Mar―29 Validation framework for epidemiological models with application to COVID-19 models Kimberly A. Dautel, Ephraim Agyingi, Pras Pathmanathan, Virginia E. Pitzer
37 [GO] 2023―Mar―23 New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells Nantia Leonidou, Alina Renz, Reihaneh Mostolizadeh, Andreas Dräger, Pedro Mendes
38 [GO] 2023―Feb―28 Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot Luke Trinity, Ian Wark, Lance Lansing, Hosna Jabbari, Ulrike Stege, Tamar Schlick
39 [GO] 2023―Feb―27 Using real-time data to guide decision-making during an influenza pandemic: A modelling analysis David J. Haw, Matthew Biggerstaff, Pragati Prasad, Joseph Walker, Bryan Grenfell, Nimalan Arinaminpathy, Cecile Viboud
40 [GO] 2023―Feb―15 Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2 Bjarke Frost Nielsen, Chadi M. Saad-Roy, Yimei Li, Kim Sneppen, Lone Simonsen, Cécile Viboud, Simon A. Levin, Bryan T. Grenfell, Alexandre V. Morozov
41 [GO] 2023―Jan―24 Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants Sören von Bülow, Mateusz Sikora, Florian E. C. Blanc, Roberto Covino, Gerhard Hummer, Charlotte M Deane
42 [GO] 2023―Jan―23 A real-time regional model for COVID-19: Probabilistic situational awareness and forecasting Solveig Engebretsen, Alfonso Diz-Lois Palomares, Gunnar Rø, Anja Bråthen Kristoffersen, Jonas Christoffer Lindstrøm, Kenth Engø-Monsen, Meghana Kamineni, Louis Yat Hin Chan, Ørjan Dale, Jørgen Eriksson Midtbø, Kristian Lindalen Stenerud, Francesco Di Ruscio, Richard White, Arnoldo Frigessi, Birgitte Freiesleben de Blasio, Alex Perkins
43 [GO] 2022―Dec―07 Bayesian nowcasting with leading indicators applied to COVID-19 fatalities in Sweden Fanny Bergström, Felix Günther, Michael Höhle, Tom Britton, Claudio José Struchiner
44 [GO] 2022―Nov―24 Trends in SARS-CoV-2 infection prevalence during England’s roadmap out of lockdown, January to July 2021 Oliver Eales, Haowei Wang, David Haw, Kylie E. C. Ainslie, Caroline E. Walters, Christina Atchison, Graham Cooke, Wendy Barclay, Helen Ward, Ara Darzi, Deborah Ashby, Christl A. Donnelly, Paul Elliott, Steven Riley, Benjamin Althouse
45 [GO] 2022―Nov―22 Effective resistance against pandemics: Mobility network sparsification for high-fidelity epidemic simulations Alexander Mercier, Samuel Scarpino, Cristopher Moore, Feng Fu
46 [GO] 2022―Nov―21 Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding Agata P. Perlinska, Adam Stasiulewicz, Mai Lan Nguyen, Karolina Swiderska, Mikolaj Zmudzinski, Alicja W. Maksymiuk, Marcin Drag, Joanna I. Sulkowska, Alexander MacKerell
47 [GO] 2022―Oct―24 Use of compressed sensing to expedite high-throughput diagnostic testing for COVID-19 and beyond Kody A. Waldstein, Jirong Yi, Myung Cho, Raghu Mudumbai, Xiaodong Wu, Steven M. Varga, Weiyu Xu, James R. Faeder
48 [GO] 2022―Oct―24 Novel methods for estimating the instantaneous and overall COVID-19 case fatality risk among care home residents in England Christoper E. Overton, Luke Webb, Uma Datta, Mike Fursman, Jo Hardstaff, Iina Hiironen, Karthik Paranthaman, Heather Riley, James Sedgwick, Julia Verne, Steve Wilner, Lorenzo Pellis, Ian Hall, Roger Dimitri Kouyos
49 [GO] 2022―Oct―24 Modelling the first wave of COVID-19 in India Dhiraj Kumar Hazra, Bhalchandra S. Pujari, Snehal M. Shekatkar, Farhina Mozaffer, Sitabhra Sinha, Vishwesha Guttal, Pinaki Chaudhuri, Gautam I. Menon, Virginia E. Pitzer
50 [GO] 2022―Oct―07 Prioritizing interventions for preventing COVID-19 outbreaks in military basic training Guido España, T. Alex Perkins, Simon D. Pollett, Morgan E. Smith, Sean M. Moore, Paul O. Kwon, Tara L. Hall, Milford H. Beagle, Clinton K. Murray, Shilpa Hakre, Sheila A. Peel, Kayvon Modjarrad, Paul T. Scott, Samuel V. Scarpino
51 [GO] 2022―Oct―06 An ensemble n-sub-epidemic modeling framework for short-term forecasting epidemic trajectories: Application to the COVID-19 pandemic in the USA Gerardo Chowell, Sushma Dahal, Amna Tariq, Kimberlyn Roosa, James M. Hyman, Ruiyan Luo, T. Alex Perkins
52 [GO] 2022―Oct―05 Scalable workflow for characterization of cell-cell communication in COVID-19 patients Yingxin Lin, Lipin Loo, Andy Tran, David M. Lin, Cesar Moreno, Daniel Hesselson, G. Gregory Neely, Jean Y. H. Yang, Curtis Huttenhower
53 [GO] 2022―Sep―26 Design of immunogens for eliciting antibody responses that may protect against SARS-CoV-2 variants Eric Wang, Arup K. Chakraborty, Anders Wallqvist
54 [GO] 2022―Sep―23 An expert judgment model to predict early stages of the COVID-19 pandemic in the United States Thomas McAndrew, Nicholas G. Reich, Tom Britton
55 [GO] 2022―Sep―19 Comparing human and model-based forecasts of COVID-19 in Germany and Poland Nikos I. Bosse, Sam Abbott, Johannes Bracher, Habakuk Hain, Billy J. Quilty, Mark Jit, Edwin van Leeuwen, Anne Cori, Sebastian Funk, James M McCaw
56 [GO] 2022―Sep―06 EpiBeds: Data informed modelling of the COVID-19 hospital burden in England Christopher E. Overton, Lorenzo Pellis, Helena B. Stage, Francesca Scarabel, Joshua Burton, Christophe Fraser, Ian Hall, Thomas A. House, Chris Jewell, Anel Nurtay, Filippo Pagani, Katrina A. Lythgoe, Claudio José Struchiner
57 [GO] 2022―Sep―06 A computational framework for modelling infectious disease policy based on age and household structure with applications to the COVID-19 pandemic Joe Hilton, Heather Riley, Lorenzo Pellis, Rabia Aziza, Samuel P. C. Brand, Ivy K. Kombe, John Ojal, Andrea Parisi, Matt J. Keeling, D. James Nokes, Robert Manson-Sawko, Thomas House, Joseph T. Wu
58 [GO] 2022―Sep―06 Optimizing global COVID-19 vaccine allocation: An agent-based computational model of 148 countries Qingfeng Li, Yajing Huang, Samuel V. Scarpino
59 [GO] 2022―Sep―01 Estimation of heterogeneous instantaneous reproduction numbers with application to characterize SARS-CoV-2 transmission in Massachusetts counties Zhenwei Zhou, Eric D. Kolaczyk, Robin N. Thompson, Laura F. White, Joseph T. Wu
60 [GO] 2022―Aug―30 Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis model Melanie H. Chitwood, Marcus Russi, Kenneth Gunasekera, Joshua Havumaki, Fayette Klaassen, Virginia E. Pitzer, Joshua A. Salomon, Nicole A. Swartwood, Joshua L. Warren, Daniel M. Weinberger, Ted Cohen, Nicolas A. Menzies, Benjamin Althouse
61 [GO] 2022―Aug―29 A novel logical model of COVID-19 intracellular infection to support therapies development Elena Piretto, Gianluca Selvaggio, Damiano Bragantini, Enrico Domenici, Luca Marchetti, Julio Saez-Rodriguez
62 [GO] 2022―Aug―26 Seasonal variation in SARS-CoV-2 transmission in temperate climates: A Bayesian modelling study in 143 European regions Tomáš Gavenčiak, Joshua Teperowski Monrad, Gavin Leech, Mrinank Sharma, Sören Mindermann, Samir Bhatt, Jan Brauner, Jan Kulveit, Claudio José Struchiner
63 [GO] 2022―Aug―24 VGsim: Scalable viral genealogy simulator for global pandemic Vladimir Shchur, Vadim Spirin, Dmitry Sirotkin, Evgeni Burovski, Nicola De Maio, Russell Corbett-Detig, Manja Marz
64 [GO] 2022―Aug―22 Different forms of superspreading lead to different outcomes: Heterogeneity in infectiousness and contact behavior relevant for the case of SARS-CoV-2 Elise J. Kuylen, Andrea Torneri, Lander Willem, Pieter J. K. Libin, Steven Abrams, Pietro Coletti, Nicolas Franco, Frederik Verelst, Philippe Beutels, Jori Liesenborgs, Niel Hens, Miles P. Davenport
65 [GO] 2022―Aug―15 Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic Michal Ben-Nun, Pete Riley, James Turtle, Steven Riley, Eric Lofgren
66 [GO] 2022―Aug―01 Modeling within-host and aerosol dynamics of SARS-CoV-2: The relationship with infectiousness Nora Heitzman-Breen, Stanca M. Ciupe, Andrew J. Yates
67 [GO] 2022―Jul―18 Drug repurposing based on a quantum-inspired method versus classical fingerprinting uncovers potential antivirals against SARS-CoV-2 Jose M. Jimenez-Guardeño, Ana Maria Ortega-Prieto, Borja Menendez Moreno, Thomas J. A. Maguire, Adam Richardson, Juan Ignacio Diaz-Hernandez, Javier Diez Perez, Mark Zuckerman, Albert Mercadal Playa, Carlos Cordero Deline, Michael H. Malim, Rocio Teresa Martinez-Nunez, James M. Briggs
68 [GO] 2022―Jul―11 Analysis of the docking property of host variants of hACE2 for SARS-CoV-2 in a large cohort Hyojung Paik, Jimin Kim, Sangjae Seo, Alexander MacKerell
69 [GO] 2022―Jul―08 Optimal control of the spatial allocation of COVID-19 vaccines: Italy as a case study Joseph Chadi Lemaitre, Damiano Pasetto, Mario Zanon, Enrico Bertuzzo, Lorenzo Mari, Stefano Miccoli, Renato Casagrandi, Marino Gatto, Andrea Rinaldo, Don Klinkenberg
70 [GO] 2022―May―31 Mutational analysis of SARS-CoV-2 variants of concern reveals key tradeoffs between receptor affinity and antibody escape Emily K. Makowski, John S. Schardt, Matthew D. Smith, Peter M. Tessier, Jinyan Li
71 [GO] 2022―May―27 Assessing the impact of lateral flow testing strategies on within-school SARS-CoV-2 transmission and absences: A modelling study Trystan Leng, Edward M. Hill, Robin N. Thompson, Michael J. Tildesley, Matt J. Keeling, Louise Dyson, Joseph T. Wu
72 [GO] 2022―May―25 Anatomy of the first six months of COVID-19 vaccination campaign in Italy Nicolò Gozzi, Matteo Chinazzi, Jessica T. Davis, Kunpeng Mu, Ana Pastore y Piontti, Marco Ajelli, Nicola Perra, Alessandro Vespignani, Alex Perkins
73 [GO] 2022―May―19 Enhancing long-term forecasting: Learning from COVID-19 models Hazhir Rahmandad, Ran Xu, Navid Ghaffarzadegan, Claudio José Struchiner
74 [GO] 2022―May―18 Networks of necessity: Simulating COVID-19 mitigation strategies for disabled people and their caregivers Thomas E. Valles, Hannah Shoenhard, Joseph Zinski, Sarah Trick, Mason A. Porter, Michael R. Lindstrom, Jacopo Grilli
75 [GO] 2022―May―16 Appropriate relaxation of non-pharmaceutical interventions minimizes the risk of a resurgence in SARS-CoV-2 infections in spite of the Delta variant Wadim Koslow, Martin J. Kühn, Sebastian Binder, Margrit Klitz, Daniel Abele, Achim Basermann, Michael Meyer-Hermann, Claudio José Struchiner
76 [GO] 2022―May―12 Structural dynamics of SARS-CoV-2 nucleocapsid protein induced by RNA binding Helder Veras Ribeiro-Filho, Gabriel Ernesto Jara, Fernanda Aparecida Heleno Batista, Gabriel Ravanhani Schleder, Celisa Caldana Costa Tonoli, Adriana Santos Soprano, Samuel Leite Guimarães, Antonio Carlos Borges, Alexandre Cassago, Marcio Chaim Bajgelman, Rafael Elias Marques, Daniela Barretto Barbosa Trivella, Kleber Gomes Franchini, Ana Carolina Migliorini Figueira, Celso Eduardo Benedetti, Paulo Sergio Lopes-de-Oliveira, Alexey Onufriev
77 [GO] 2022―Apr―29 phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets Nicola De Maio, William Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman, Ville Mustonen
78 [GO] 2022―Apr―11 Digital contact tracing and network theory to stop the spread of COVID-19 using big-data on human mobility geolocalization Matteo Serafino, Higor S. Monteiro, Shaojun Luo, Saulo D. S. Reis, Carles Igual, Antonio S. Lima Neto, Matías Travizano, José S. Andrade, Hernán A. Makse, Benjamin Althouse
79 [GO] 2022―Apr―11 Computational drug repurposing against SARS-CoV-2 reveals plasma membrane cholesterol depletion as key factor of antiviral drug activity Szilvia Barsi, Henrietta Papp, Alberto Valdeolivas, Dániel J. Tóth, Anett Kuczmog, Mónika Madai, László Hunyady, Péter Várnai, Julio Saez-Rodriguez, Ferenc Jakab, Bence Szalai, James Costello
80 [GO] 2022―Apr―07 Adaptive and optimized COVID-19 vaccination strategies across geographical regions and age groups Jeta Molla, Alejandro Ponce de León Chávez, Takayuki Hiraoka, Tapio Ala-Nissila, Mikko Kivelä, Lasse Leskelä, Claudio José Struchiner
81 [GO] 2022―Apr―04 Meteorological factors and non-pharmaceutical interventions explain local differences in the spread of SARS-CoV-2 in Austria Katharina Ledebur, Michaela Kaleta, Jiaying Chen, Simon D. Lindner, Caspar Matzhold, Florian Weidle, Christoph Wittmann, Katharina Habimana, Linda Kerschbaumer, Sophie Stumpfl, Georg Heiler, Martin Bicher, Nikolas Popper, Florian Bachner, Peter Klimek, Roger Dimitri Kouyos
82 [GO] 2022―Mar―31 Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data Pablo M. De Salazar, Fred Lu, James A Hay, Diana Gómez-Barroso, Pablo Fernández-Navarro, Elena V Martínez, Jenaro Astray-Mochales, Rocío Amillategui, Ana García-Fulgueiras, Maria D Chirlaque, Alonso Sánchez-Migallón, Amparo Larrauri, María J Sierra, Marc Lipsitch, Fernando Simón, Mauricio Santillana, Miguel A Hernán, Benjamin Althouse
83 [GO] 2022―Mar―30 Performance of early warning signals for disease re-emergence: A case study on COVID-19 data Daniele Proverbio, Françoise Kemp, Stefano Magni, Jorge Gonçalves, Benjamin Althouse
84 [GO] 2022―Mar―30 Inferring age-specific differences in susceptibility to and infectiousness upon SARS-CoV-2 infection based on Belgian social contact data Nicolas Franco, Pietro Coletti, Lander Willem, Leonardo Angeli, Adrien Lajot, Steven Abrams, Philippe Beutels, Christel Faes, Niel Hens, Claudio José Struchiner
85 [GO] 2022―Mar―25 Assessing the best time interval between doses in a two-dose vaccination regimen to reduce the number of deaths in an ongoing epidemic of SARS-CoV-2 Leonardo Souto Ferreira, Otavio Canton, Rafael Lopes Paixão da Silva, Silas Poloni, Vítor Sudbrack, Marcelo Eduardo Borges, Caroline Franco, Flavia Maria Darcie Marquitti, José Cássio de Moraes, Maria Amélia de Sousa Mascena Veras, Roberto André Kraenkel, Renato Mendes Coutinho, Jennifer A. Flegg
86 [GO] 2022―Mar―07 Multiphysics and multiscale modeling of microthrombosis in COVID-19 He Li, Yixiang Deng, Zhen Li, Ander Dorken Gallastegi, Christos S. Mantzoros, Galit H. Frydman, George E. Karniadakis, Alison L. Marsden
87 [GO] 2022―Mar―02 Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants Stuart A. MacGowan, Michael I. Barton, Mikhail Kutuzov, Omer Dushek, P. Anton van der Merwe, Geoffrey J. Barton, Charlotte M. Deane
88 [GO] 2022―Feb―25 The role of childrens’ vaccination for COVID-19-Pareto-optimal allocations of vaccines Nir Gavish, Guy Katriel, Alison L. Hill
89 [GO] 2022―Feb―23 Bayesian data assimilation for estimating instantaneous reproduction numbers during epidemics: Applications to COVID-19 Xian Yang, Shuo Wang, Yuting Xing, Ling Li, Richard Yi Da Xu, Karl J. Friston, Yike Guo, Alison L. Hill
90 [GO] 2022―Feb―10 Predicted impact of the viral mutational landscape on the cytotoxic response against SARS-CoV-2 Anna Foix, Daniel López, Francisco Díez-Fuertes, Michael J. McConnell, Antonio J. Martín-Galiano, Roger Dimitri Kouyos
91 [GO] 2022―Jan―19 Extended ensemble simulations of a SARS-CoV-2 nsp1-5’-UTR complex Shun Sakuraba, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono, Bert L. de Groot
92 [GO] 2022―Jan―18 Longitudinally monitored immune biomarkers predict the timing of COVID-19 outcomes Gorka Lasso, Saad Khan, Stephanie A. Allen, Margarette Mariano, Catalina Florez, Erika P. Orner, Jose A. Quiroz, Gregory Quevedo, Aldo Massimi, Aditi Hegde, Ariel S. Wirchnianski, Robert H. Bortz, Ryan J. Malonis, George I. Georgiev, Karen Tong, Natalia G. Herrera, Nicholas C. Morano, Scott J. Garforth, Avinash Malaviya, Ahmed Khokhar, Ethan Laudermilch, M. Eugenia Dieterle, J. Maximilian Fels, Denise Haslwanter, Rohit K. Jangra, Jason Barnhill, Steven C. Almo, Kartik Chandran, Jonathan R. Lai, Libusha Kelly, Johanna P. Daily, Olivia Vergnolle, Amber M. Smith
93 [GO] 2022―Jan―12 Hybrid simulation modelling of networks of heterogeneous care homes and the inter-facility spread of Covid-19 by sharing staff Le Khanh Ngan Nguyen, Itamar Megiddo, Susan Howick, Claudio José Struchiner
94 [GO] 2022―Jan―04 Microsimulation based quantitative analysis of COVID-19 management strategies István Z. Reguly, Dávid Csercsik, János Juhász, Kálmán Tornai, Zsófia Bujtár, Gergely Horváth, Bence Keömley-Horváth, Tamás Kós, György Cserey, Kristóf Iván, Sándor Pongor, Gábor Szederkényi, Gergely Röst, Attila Csikász-Nagy, Claudio José Struchiner
95 [GO] 2021―Dec―23 Spatially distributed infection increases viral load in a computational model of SARS-CoV-2 lung infection Melanie E. Moses, Steven Hofmeyr, Judy L. Cannon, Akil Andrews, Rebekah Gridley, Monica Hinga, Kirtus Leyba, Abigail Pribisova, Vanessa Surjadidjaja, Humayra Tasnim, Stephanie Forrest, Amber M Smith
96 [GO] 2021―Dec―16 Modeling the onset of symptoms of COVID-19: Effects of SARS-CoV-2 variant Joseph R. Larsen, Margaret R. Martin, John D. Martin, James B. Hicks, Peter Kuhn, Bard Ermentrout
97 [GO] 2021―Dec―13 Optimal vaccine allocation for COVID-19 in the Netherlands: A data-driven prioritization Fuminari Miura, Ka Yin Leung, Don Klinkenberg, Kylie E. C. Ainslie, Jacco Wallinga, Claudio José Struchiner
98 [GO] 2021―Dec―13 Viral surface geometry shapes influenza and coronavirus spike evolution through antibody pressure Assaf Amitai, Becca Asquith
99 [GO] 2021―Dec―13 Epitope profiling using computational structural modelling demonstrated on coronavirus-binding antibodies Sarah A. Robinson, Matthew I. J. Raybould, Constantin Schneider, Wing Ki Wong, Claire Marks, Charlotte M. Deane, Franca Fraternali
100 [GO] 2021―Nov―24 Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients Shun Wang, Mengqian Hao, Zishu Pan, Jinzhi Lei, Xiufen Zou, Amber M Smith
101 [GO] 2021―Nov―18 Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections Sean B. King, Mona Singh, Teresa M. Przytycka
102 [GO] 2021―Oct―28 Synergistic interventions to control COVID-19: Mass testing and isolation mitigates reliance on distancing Emily Howerton, Matthew J. Ferrari, Ottar N. Bjørnstad, Tiffany L. Bogich, Rebecca K. Borchering, Chris P. Jewell, James D. Nichols, William J. M. Probert, Michael C. Runge, Michael J. Tildesley, Cécile Viboud, Katriona Shea, Jennifer A. Flegg
103 [GO] 2021―Oct―25 OutbreakFlow: Model-based Bayesian inference of disease outbreak dynamics with invertible neural networks and its application to the COVID-19 pandemics in Germany Stefan T. Radev, Frederik Graw, Simiao Chen, Nico T. Mutters, Vanessa M. Eichel, Till Bärnighausen, Ullrich Köthe, Mark M. Tanaka
104 [GO] 2021―Oct―19 Factors affecting aerosol SARS-CoV-2 transmission via HVAC systems; a modeling study Zachary J. Cotman, Michael J. Bowden, Barrett P. Richter, Joseph H. Phelps, Christopher J. Dibble, Alison L. Marsden
105 [GO] 2021―Oct―14 Universal risk phenotype of US counties for flu-like transmission to improve county-specific COVID-19 incidence forecasts Yi Huang, Ishanu Chattopadhyay, Benjamin Muir Althouse
106 [GO] 2021―Oct―14 Interplay between mobility, multi-seeding and lockdowns shapes COVID-19 local impact Mattia Mazzoli, Emanuele Pepe, David Mateo, Ciro Cattuto, Laetitia Gauvin, Paolo Bajardi, Michele Tizzoni, Alberto Hernando, Sandro Meloni, José J. Ramasco, Alex Perkins
107 [GO] 2021―Sep―20 Levels of SARS-CoV-2 population exposure are considerably higher than suggested by seroprevalence surveys Siyu Chen, Jennifer A. Flegg, Lisa J. White, Ricardo Aguas, Claudio José Struchiner
108 [GO] 2021―Sep―17 Uncertainty quantification and sensitivity analysis of COVID-19 exit strategies in an individual-based transmission model Federica Gugole, Luc E. Coffeng, Wouter Edeling, Benjamin Sanderse, Sake J. de Vlas, Daan Crommelin, Don Klinkenberg
109 [GO] 2021―Sep―13 Characterization of the NiRAN domain from RNA-dependent RNA polymerase provides insights into a potential therapeutic target against SARS-CoV-2 Abhisek Dwivedy, Richard Mariadasse, Mohammed Ahmad, Sayan Chakraborty, Deepsikha Kar, Satish Tiwari, Sankar Bhattacharyya, Sudipta Sonar, Shailendra Mani, Prafullakumar Tailor, Tanmay Majumdar, Jeyaraman Jeyakanthan, Bichitra Kumar Biswal, Avner Schlessinger
110 [GO] 2021―Sep―10 The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout Nicolò Gozzi, Paolo Bajardi, Nicola Perra, Roger Dimitri Kouyos
111 [GO] 2021―Sep―08 An integrated framework for building trustworthy data-driven epidemiological models: Application to the COVID-19 outbreak in New York City Sheng Zhang, Joan Ponce, Zhen Zhang, Guang Lin, George Karniadakis, Sergei L. Kosakovsky Pond
112 [GO] 2021―Sep―07 Using test positivity and reported case rates to estimate state-level COVID-19 prevalence and seroprevalence in the United States Weihsueh A. Chiu, Martial L. Ndeffo-Mbah, Benjamin Muir Althouse
113 [GO] 2021―Sep―07 Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants Rui Yin, Johnathan D. Guest, Ghazaleh Taherzadeh, Ragul Gowthaman, Ipsa Mittra, Jane Quackenbush, Brian G. Pierce, Charlotte M. Deane
114 [GO] 2021―Sep―02 Relaxing restrictions at the pace of vaccination increases freedom and guards against further COVID-19 waves Simon Bauer, Sebastian Contreras, Jonas Dehning, Matthias Linden, Emil Iftekhar, Sebastian B. Mohr, Alvaro Olivera-Nappa, Viola Priesemann, Claudio José Struchiner
115 [GO] 2021―Aug―30 Targeted pandemic containment through identifying local contact network bottlenecks Shenghao Yang, Priyabrata Senapati, Di Wang, Chris T. Bauch, Kimon Fountoulakis, Benjamin Muir Althouse
116 [GO] 2021―Aug―26 Mitigating COVID-19 outbreaks in workplaces and schools by hybrid telecommuting Simon Mauras, Vincent Cohen-Addad, Guillaume Duboc, Max Dupré la Tour, Paolo Frasca, Claire Mathieu, Lulla Opatowski, Laurent Viennot, Roger Dimitri Kouyos
117 [GO] 2021―Aug―12 Using mobility data in the design of optimal lockdown strategies for the COVID-19 pandemic Ritabrata Dutta, Susana N. Gomes, Dante Kalise, Lorenzo Pacchiardi, Matthew (Matt) Ferrari
118 [GO] 2021―Aug―05 Modelling conformational state dynamics and its role on infection for SARS-CoV-2 Spike protein variants Natália Teruel, Olivier Mailhot, Rafael J. Najmanovich, Roland L. Dunbrack
119 [GO] 2021―Jul―26 Covasim: An agent-based model of COVID-19 dynamics and interventions Cliff C. Kerr, Robyn M. Stuart, Dina Mistry, Romesh G. Abeysuriya, Katherine Rosenfeld, Gregory R. Hart, Rafael C. Núñez, Jamie A. Cohen, Prashanth Selvaraj, Brittany Hagedorn, Lauren George, Michał Jastrzębski, Amanda S. Izzo, Greer Fowler, Anna Palmer, Dominic Delport, Nick Scott, Sherrie L. Kelly, Caroline S. Bennette, Bradley G. Wagner, Stewart T. Chang, Assaf P. Oron, Edward A. Wenger, Jasmina Panovska-Griffiths, Michael Famulare, Daniel J. Klein, Manja Marz
120 [GO] 2021―Jul―26 A mechanistic and data-driven reconstruction of the time-varying reproduction number: Application to the COVID-19 epidemic Bernard Cazelles, Clara Champagne, Benjamin Nguyen-Van-Yen, Catherine Comiskey, Elisabeta Vergu, Benjamin Roche, Roger Dimitri Kouyos
121 [GO] 2021―Jul―26 Projecting contact matrices in 177 geographical regions: An update and comparison with empirical data for the COVID-19 era Kiesha Prem, Kevin van Zandvoort, Petra Klepac, Rosalind M. Eggo, Nicholas G. Davies, Alex R. Cook, Mark Jit, Matthew (Matt) Ferrari
122 [GO] 2021―Jul―22 Optimizing testing for COVID-19 in India Philip Cherian, Sandeep Krishna, Gautam I. Menon, Benjamin Muir Althouse
123 [GO] 2021―Jul―20 Spatially resolved simulations of the spread of COVID-19 in three European countries Andrea Parisi, Samuel P. C. Brand, Joe Hilton, Rabia Aziza, Matt J. Keeling, D. James Nokes, Alex Perkins
124 [GO] 2021―Jul―14 COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity Vladimir Naumov, Evgeny Putin, Stefan Pushkov, Ekaterina Kozlova, Konstantin Romantsov, Alexander Kalashnikov, Fedor Galkin, Nina Tihonova, Anastasia Shneyderman, Egor Galkin, Arsenii Zinkevich, Stephanie M. Cope, Ramanathan Sethuraman, Tudor I. Oprea, Alexander T. Pearson, Savas Tay, Nishant Agrawal, Alexey Dubovenko, Quentin Vanhaelen, Ivan Ozerov, Alex Aliper, Evgeny Izumchenko, Alex Zhavoronkov, Mihaela Pertea
125 [GO] 2021―Jul―12 Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19 Hamish Gibbs, Emily Nightingale, Yang Liu, James Cheshire, Leon Danon, Liam Smeeth, Carl A. B. Pearson, Chris Grundy, Adam J. Kucharski, Rosalind M. Eggo, Alex Perkins
126 [GO] 2021―Jul―12 OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing Robert Hinch, William J. M. Probert, Anel Nurtay, Michelle Kendall, Chris Wymant, Matthew Hall, Katrina Lythgoe, Ana Bulas Cruz, Lele Zhao, Andrea Stewart, Luca Ferretti, Daniel Montero, James Warren, Nicole Mather, Matthew Abueg, Neo Wu, Olivier Legat, Katie Bentley, Thomas Mead, Kelvin Van-Vuuren, Dylan Feldner-Busztin, Tommaso Ristori, Anthony Finkelstein, David G. Bonsall, Lucie Abeler-Dörner, Christophe Fraser, Benjamin Muir Althouse
127 [GO] 2021―Jul―12 Bayesian back-calculation and nowcasting for line list data during the COVID-19 pandemic Tenglong Li, Laura F. White, Alex Perkins
128 [GO] 2021―Jul―08 COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission Paul Tupper, Caroline Colijn, Philip K. Maini
129 [GO] 2021―Jul―08 COVID-19 modeling and non-pharmaceutical interventions in an outpatient dialysis unit Hankyu Jang, Philip M. Polgreen, Alberto M. Segre, Sriram V. Pemmaraju, Roger Dimitri Kouyos
130 [GO] 2021―Jul―08 The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins Lukasz Jaroszewski, Mallika Iyer, Arghavan Alisoltani, Mayya Sedova, Adam Godzik, Marco Punta
131 [GO] 2021―Jun―23 Contrasting factors associated with COVID-19-related ICU admission and death outcomes in hospitalised patients by means of Shapley values Massimo Cavallaro, Haseeb Moiz, Matt J. Keeling, Noel D. McCarthy, Benjamin Muir Althouse
132 [GO] 2021―Jun―17 Contact tracing efficiency, transmission heterogeneity, and accelerating COVID-19 epidemics Billy J. Gardner, A. Marm Kilpatrick, Sebastian Funk
133 [GO] 2021―Jun―17 Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches Fred S. Lu, Andre T. Nguyen, Nicholas B. Link, Mathieu Molina, Jessica T. Davis, Matteo Chinazzi, Xinyue Xiong, Alessandro Vespignani, Marc Lipsitch, Mauricio Santillana, Cecile Viboud
134 [GO] 2021―Jun―16 A network modelling approach to assess non-pharmaceutical disease controls in a worker population: An application to SARS-CoV-2 Edward M. Hill, Benjamin D. Atkins, Matt J. Keeling, Louise Dyson, Michael J. Tildesley, Mercedes Pascual
135 [GO] 2021―May―27 Estimating direct and spill-over impacts of political elections on COVID-19 transmission using synthetic control methods Jue Tao Lim, Kenwin Maung, Sok Teng Tan, Suan Ee Ong, Jane Mingjie Lim, Joel Ruihan Koo, Haoyang Sun, Minah Park, Ken Wei Tan, Joanne Yoong, Alex R. Cook, Borame Sue Lee Dickens, Dominik Wodarz
136 [GO] 2021―May―06 Modelling optimal vaccination strategy for SARS-CoV-2 in the UK Sam Moore, Edward M. Hill, Louise Dyson, Michael J. Tildesley, Matt J. Keeling, Alex Perkins
137 [GO] 2021―Apr―09 Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection Piyush Nanda, Amit Ghosh, Anders Wallqvist
138 [GO] 2021―Apr―01 Computational epitope map of SARS-CoV-2 spike protein Mateusz Sikora, Sören von Bülow, Florian E. C. Blanc, Michael Gecht, Roberto Covino, Gerhard Hummer, Alexander MacKerell
139 [GO] 2021―Mar―29 Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model Gregory L. Watson, Di Xiong, Lu Zhang, Joseph A. Zoller, John Shamshoian, Phillip Sundin, Teresa Bufford, Anne W. Rimoin, Marc A. Suchard, Christina M. Ramirez, Virginia E. Pitzer
140 [GO] 2021―Mar―29 On realized serial and generation intervals given control measures: The COVID-19 pandemic case Andrea Torneri, Peter Libin, Gianpaolo Scalia Tomba, Christel Faes, James G. Wood, Niel Hens, Alex Perkins
141 [GO] 2021―Mar―17 Gene variants of coagulation related proteins that interact with SARS-CoV-2 David Holcomb, Aikaterini Alexaki, Nancy Hernandez, Ryan Hunt, Kyle Laurie, Jacob Kames, Nobuko Hamasaki-Katagiri, Anton A. Komar, Michael DiCuccio, Chava Kimchi-Sarfaty, James M. Briggs
142 [GO] 2021―Mar―17 SARS-CoV-2 viral dynamics in non-human primates Antonio Gonçalves, Pauline Maisonnasse, Flora Donati, Mélanie Albert, Sylvie Behillil, Vanessa Contreras, Thibaut Naninck, Romain Marlin, Caroline Solas, Andres Pizzorno, Julien Lemaitre, Nidhal Kahlaoui, Olivier Terrier, Raphael Ho Tsong Fang, Vincent Enouf, Nathalie Dereuddre-Bosquet, Angela Brisebarre, Franck Touret, Catherine Chapon, Bruno Hoen, Bruno Lina, Manuel Rosa Calatrava, Xavier de Lamballerie, France Mentré, Roger Le Grand, Sylvie van der Werf, Jérémie Guedj, Roland R. Regoes
143 [GO] 2021―Mar―09 Assessing the feasibility and effectiveness of household-pooled universal testing to control COVID-19 epidemics Pieter J. K. Libin, Lander Willem, Timothy Verstraeten, Andrea Torneri, Joris Vanderlocht, Niel Hens, Alex Perkins
144 [GO] 2021―Mar―08 A network-informed analysis of SARS-CoV-2 and hemophagocytic lymphohistiocytosis genes’ interactions points to Neutrophil extracellular traps as mediators of thrombosis in COVID-19 Jun Ding, David Earl Hostallero, Mohamed Reda El Khili, Gregory Joseph Fonseca, Simon Milette, Nuzha Noorah, Myriam Guay-Belzile, Jonathan Spicer, Noriko Daneshtalab, Martin Sirois, Karine Tremblay, Amin Emad, Simon Rousseau, Benjamin Muir Althouse
145 [GO] 2021―Mar―04 Age-structured non-pharmaceutical interventions for optimal control of COVID-19 epidemic Quentin Richard, Samuel Alizon, Marc Choisy, Mircea T. Sofonea, Ramsès Djidjou-Demasse, Gabor Balazsi
146 [GO] 2021―Mar―04 Group testing as a strategy for COVID-19 epidemiological monitoring and community surveillance Vincent Brault, Bastien Mallein, Jean-François Rupprecht, Jingyi Jessica Li
147 [GO] 2021―Mar―01 Success of prophylactic antiviral therapy for SARS-CoV-2: Predicted critical efficacies and impact of different drug-specific mechanisms of action Peter Czuppon, Florence Débarre, Antonio Gonçalves, Olivier Tenaillon, Alan S. Perelson, Jérémie Guedj, François Blanquart, James R. Faeder
148 [GO] 2021―Feb―26 Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches Judith A. Bouman, Julien Riou, Sebastian Bonhoeffer, Roland R. Regoes, James Lloyd-Smith
149 [GO] 2021―Feb―11 The role of children in the spread of COVID-19: Using household data from Bnei Brak, Israel, to estimate the relative susceptibility and infectivity of children Itai Dattner, Yair Goldberg, Guy Katriel, Rami Yaari, Nurit Gal, Yoav Miron, Arnona Ziv, Rivka Sheffer, Yoram Hamo, Amit Huppert, James Lloyd-Smith
150 [GO] 2021―Feb―08 SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19 Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci, Manja Marz
151 [GO] 2021―Feb―03 Dynamics of COVID-19 under social distancing measures are driven by transmission network structure Anjalika Nande, Ben Adlam, Justin Sheen, Michael Z. Levy, Alison L. Hill, Alex Perkins
152 [GO] 2021―Feb―03 ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways Agatha Treveil, Balazs Bohar, Padhmanand Sudhakar, Lejla Gul, Luca Csabai, Marton Olbei, Martina Poletti, Matthew Madgwick, Tahila Andrighetti, Isabelle Hautefort, Dezso Modos, Tamas Korcsmaros, Manja Marz
153 [GO] 2021―Jan―29 Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19 Burcu Tepekule, Anthony Hauser, Viacheslav N. Kachalov, Sara Andresen, Thomas Scheier, Peter W. Schreiber, Huldrych F. Günthard, Roger D. Kouyos, Alex Perkins
154 [GO] 2021―Jan―29 Estimating the time-varying reproduction number of COVID-19 with a state-space method Shinsuke Koyama, Taiki Horie, Shigeru Shinomoto, Roger Dimitri Kouyos
155 [GO] 2021―Jan―22 Predictions of COVID-19 dynamics in the UK: Short-term forecasting and analysis of potential exit strategies Matt J. Keeling, Edward M. Hill, Erin E. Gorsich, Bridget Penman, Glen Guyver-Fletcher, Alex Holmes, Trystan Leng, Hector McKimm, Massimiliano Tamborrino, Louise Dyson, Michael J. Tildesley, Jennifer A. Flegg
156 [GO] 2021―Jan―21 Post-lockdown abatement of COVID-19 by fast periodic switching Michelangelo Bin, Peter Y. K. Cheung, Emanuele Crisostomi, Pietro Ferraro, Hugo Lhachemi, Roderick Murray-Smith, Connor Myant, Thomas Parisini, Robert Shorten, Sebastian Stein, Lewi Stone, Mercedes Pascual
157 [GO] 2021―Jan―19 Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers Sara Ibrahim Omar, Meng Zhao, Rohith Vedhthaanth Sekar, Sahar Arbabi Moghadam, Jack A. Tuszynski, Michael T. Woodside, Alexander MacKerell
158 [GO] 2021―Jan―07 The value of decreasing the duration of the infectious period of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection Bruce Y. Lee, Sarah M. Bartsch, Marie C. Ferguson, Patrick T. Wedlock, Kelly J. O’Shea, Sheryl S. Siegmund, Sarah N. Cox, James A. McKinnell, Benjamin Muir Althouse
159 [GO] 2020―Dec―31 A novel virtual screening procedure identifies Pralatrexate as inhibitor of SARS-CoV-2 RdRp and it reduces viral replication in vitro Haiping Zhang, Yang Yang, Junxin Li, Min Wang, Konda Mani Saravanan, Jinli Wei, Justin Tze-Yang Ng, Md. Tofazzal Hossain, Maoxuan Liu, Huiling Zhang, Xiaohu Ren, Yi Pan, Yin Peng, Yi Shi, Xiaochun Wan, Yingxia Liu, Yanjie Wei, Avner Schlessinger
160 [GO] 2020―Dec―28 The COVID-19 outbreak in Sichuan, China: Epidemiology and impact of interventions Quan-Hui Liu, Ana I. Bento, Kexin Yang, Hang Zhang, Xiaohan Yang, Stefano Merler, Alessandro Vespignani, Jiancheng Lv, Hongjie Yu, Wei Zhang, Tao Zhou, Marco Ajelli, Alex Perkins
161 [GO] 2020―Dec―18 Ten simple rules for creating a brand-new virtual academic meeting (even amid a pandemic) Scott Rich, Andreea O. Diaconescu, John D. Griffiths, Milad Lankarany, Scott Markel
162 [GO] 2020―Dec―09 Empirical model for short-time prediction of COVID-19 spreading Martí Català, Sergio Alonso, Enrique Alvarez-Lacalle, Daniel López, Pere-Joan Cardona, Clara Prats, Benjamin Muir Althouse
163 [GO] 2020―Dec―08 Targeting TMPRSS2 and Cathepsin B/L together may be synergistic against SARS-CoV-2 infection Pranesh Padmanabhan, Rajat Desikan, Narendra M. Dixit, Miles P. Davenport
164 [GO] 2020―Dec―07 In silico mutagenesis of human ACE2 with S protein and translational efficiency explain SARS-CoV-2 infectivity in different species Javier Delgado Blanco, Xavier Hernandez-Alias, Damiano Cianferoni, Luis Serrano, Rachel Kolodny
165 [GO] 2020―Dec―03 Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing Sean C. Anderson, Andrew M. Edwards, Madi Yerlanov, Nicola Mulberry, Jessica E. Stockdale, Sarafa A. Iyaniwura, Rebeca C. Falcao, Michael C. Otterstatter, Michael A. Irvine, Naveed Z. Janjua, Daniel Coombs, Caroline Colijn, Christopher V. Rao
166 [GO] 2020―Dec―03 Insights on cross-species transmission of SARS-CoV-2 from structural modeling João P. G. L. M. Rodrigues, Susana Barrera-Vilarmau, João M. C. Teixeira, Marija Sorokina, Elizabeth Seckel, Panagiotis L. Kastritis, Michael Levitt, Charlotte M. Deane
167 [GO] 2020―Oct―29 Ten simple rules for women principal investigators during a pandemic Pamela K. Kreeger, Amy Brock, Holly C. Gibbs, K. Jane Grande-Allen, Alice H. Huang, Kristyn S. Masters, Padmini Rangamani, Michaela R. Reagan, Shannon L. Servoss, Scott Markel
168 [GO] 2020―Oct―15 A model-based evaluation of the efficacy of COVID-19 social distancing, testing and hospital triage policies Audrey McCombs, Claus Kadelka, James Lloyd-Smith
169 [GO] 2020―Oct―08 Use of Angiotensin-Converting Enzyme Inhibitors and Angiotensin II Receptor Blockers During the COVID-19 Pandemic: A Modeling Analysis Mehrshad Sadria, Anita T. Layton, Daniel A. Beard
170 [GO] 2020―Sep―17 Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization Zhengqiao Zhao, Bahrad A. Sokhansanj, Charvi Malhotra, Kitty Zheng, Gail L. Rosen, Nicola Segata
171 [GO] 2020―Jul―02 Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices Joe Hilton, Matt J. Keeling, Jennifer A. Flegg
172 [GO] 2020―Jun―25 Ten simple rules for researchers while in isolation from a pandemic Hoe-Han Goh, Philip E. Bourne, Scott Markel
173 [GO] 2020―Feb―07 Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic Susanne Reimering, Sebastian Muñoz, Alice C. McHardy, Cecile Viboud
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173 Results       Page 1



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