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COVID Antworten in den wissenschaftlichen Zeitschriften der Welt


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Springer (Biomed Central Ltd.): BMC Genomics
  Original Artikel Datum Titel Autoren   Alle Autoren
1 [GO] 2025―Mrz―21 Altered structural and transporter-related gene expression patterns in the placenta play a role in fetal demise during Porcine reproductive and respiratory syndrome virus infection Angelica Van Goor, Alex Pasternak, Kristen E. Walker, Shannon Chick, John C. S. Harding, Joan K. Lunney
2 [GO] 2025―Mrz―21 Seminal plasma proteomics of asymptomatic COVID-19 patients reveals disruption of male reproductive function Jialyu Huang, Yufang Su, Jiawei Wang, Zheng Fang, Yiwei Zhang, Hong Chen, et al. (+5)
3 [GO] 2025―Jan―29 Unsupervised detection of novel SARS-CoV-2 mutations and lineages in wastewater samples using long-read sequencing Ignacio Garcia, Rasmus K. Riis, Line V. Moen, Andreas Rohringer, Elisabeth H. Madslien, Karoline Bragstad
4 [GO] 2024―Dez―30 Cov-trans: an efficient algorithm for discontinuous transcript assembly in coronaviruses Xiaoyu Guo, Zhenming Wu, Shu Zhang, Jin Zhao
5 [GO] 2024―Nov―11 Sustained applicability of SARS-CoV-2 variants identification by Sanger Sequencing Strategy on emerging various SARS-CoV-2 Omicron variants in Hiroshima, Japan Chanroth Chhoung, Ko Ko, Serge Ouoba, Zayar Phyo, Golda Ataa Akuffo, Aya Sugiyama, et al. (+5)
6 [GO] 2024―Okt―21 Comparison of genotypic features between two groups of antibiotic resistant Klebsiella pneumoniae clinical isolates obtained before and after the COVID-19 pandemic from Egypt Pansee Gamaleldin, Mustafa Alseqely, Benjamin A. Evans, Hoda Omar, Alaa Abouelfetouh
7 [GO] 2024―Okt―21 Fine-tuning of a CRISPRi screen in the seventh pandemic Vibrio cholerae Kevin Debatisse, Théophile Niault, Sarah Peeters, Amandine Maire, Busra Toktas, Baptiste Darracq, et al. (+4)
8 [GO] 2024―Jun―28 UnCoVar: a reproducible and scalable workflow for transparent and robust virus variant calling and lineage assignment using SARS-CoV-2 as an example Alexander Thomas, Thomas Battenfeld, Ivana Kraiselburd, Olympia Anastasiou, Ulf Dittmer, Ann-Kathrin Dörr, et al. (+11)
9 [GO] 2024―Mai―16 Genomic analysis of severe COVID-19 considering or not asthma comorbidity: GWAS insights from the BQC19 cohort Omayma Amri, Anne-Marie Madore, Anne-Marie Boucher-Lafleur, Catherine Laprise
10 [GO] 2024―Mai―01 Ocular A-to-I RNA editing signatures associated with SARS-CoV-2 infection Yun-Yun Jin, Ya-Ping Liang, Wen-Hao Huang, Liang Guo, Li-Li Cheng, Tian-Tian Ran, et al. (+3)
11 [GO] 2024―Apr―17 Comprehensive genomic analysis of the SARS-CoV-2 Omicron variant BA.2.76 in Jining City, China, 2022 Qiang Yin, Wei Liu, Yajuan Jiang, Qiang Feng, Xiaoyu Wang, Huixin Dou, et al. (+5)
12 [GO] 2024―Mrz―12 Decoding HiPSC-CM’s Response to SARS-CoV-2: mapping the molecular landscape of cardiac injury Sicheng Chen, Zhenquan Fu, Kaitong Chen, Xinyao Zheng, Zhenyang Fu
13 [GO] 2024―Jan―13 Chronic shedding of a SARS-CoV-2 Alpha variant in wastewater Michael J. Conway, Hannah Yang, Lauren A. Revord, Michael P. Novay, Rachel J. Lee, Avery S. Ward, et al. (+4)
14 [GO] 2023―Okt―18 Potential network markers and signaling pathways for B cells of COVID-19 based on single-cell condition-specific networks Ying Li, Liqin Han, Peiluan Li, Jing Ge, Yun Xue, Luonan Chen
15 [GO] 2023―Jul―10 The 29-nucleotide deletion in SARS-CoV: truncated versions of ORF8 are under purifying selection Anastassia Bykova, Andreu Saura, Galina V. Glazko, Abiel Roche-Lima, Vyacheslav Yurchenko, Igor B. Rogozin
16 [GO] 2023―Jun―12 Integrative multi-omics approach for identifying molecular signatures and pathways and deriving and validating molecular scores for COVID-19 severity and status Danika Lipman, Sandra E. Safo, Thierry Chekouo
17 [GO] 2023―Jun―10 Genomic surveillance of severe acute respiratory syndrome coronavirus 2 in Burundi, from May 2021 to January 2022 Cassien Nduwimana, Néhémie Nzoyikorera, Armstrong Ndihokubwayo, Théogène Ihorimbere, Célestin Nibogora, Adolphe Ndoreraho, et al. (+5)
18 [GO] 2023―Mai―18 A new profiling approach for DNA sequences based on the nucleotides' physicochemical features for accurate analysis of SARS-CoV-2 genomes Saeedeh Akbari Rokn Abadi, Amirhossein Mohammadi, Somayyeh Koohi
19 [GO] 2023―Jan―10 Evaluation and limitations of different approaches among COVID-19 fatal cases using whole-exome sequencing data Natalia Forgacova, Zuzana Holesova, Rastislav Hekel, Tatiana Sedlackova, Zuzana Pos, Lucia Krivosikova, et al. (+8)
20 [GO] 2023―Jan―05 Correction: A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones Filippo Utro, Chaya Levovitz, Kahn Rhrissorrakrai, Laxmi Parida
21 [GO] 2022―Nov―17 A two-step process for in silico screening to assess the performance of qRTPCR kits against variant strains of SARS-CoV-2 Swati Gupta, Amit Kumar, Nivedita Gupta, Deepak R. Bharti, Neeraj Aggarwal, Vasanthapuram Ravi
22 [GO] 2022―Okt―18 Cov2clusters: genomic clustering of SARS-CoV-2 sequences Benjamin Sobkowiak, Kimia Kamelian, James E. A. Zlosnik, John Tyson, Anders Gonçalves da Silva, Linda M. N. Hoang, et al. (+2)
23 [GO] 2022―Sep―01 Genomic surveillance of SARS-COV-2 reveals diverse circulating variant lineages in Nairobi and Kiambu Counties, Kenya Josiah O. Kuja, Bernard N. Kanoi, Renzo F. Balboa, Clement Shiluli, Michael Maina, Harrison Waweru, et al. (+8)
24 [GO] 2022―Jul―15 Genomic surveillance of SARS-CoV-2 in US military compounds in Afghanistan reveals multiple introductions and outbreaks of Alpha and Delta variants Irina Maljkovic Berry, Jun Hang, Christian Fung, Yu Yang, Marcus Chibucos, Adam Pollio, et al. (+6)
25 [GO] 2022―Jul―14 Phylogenetic analysis and comparative genomics of SARS-CoV-2 from survivor and non-survivor COVID-19 patients in Cordoba, Argentina Nadia B. Olivero, Ana S. Gonzalez-Reiche, Viviana E. Re, Gonzalo M. Castro, María B. Pisano, Paola Sicilia, et al. (+13)
26 [GO] 2022―Jun―03 SARS-CoV-2 Delta variant isolates from vaccinated individuals Lauren Brinkac, Sheila Diepold, Shane Mitchell, Stephanie Sarnese, Lee F. Kolakowski, William M. Nelson, Katharine Jennings
27 [GO] 2022―Mai―30 A random priming amplification method for whole genome sequencing of SARS-CoV-2 virus Klaudia Chrzastek, Chandana Tennakoon, Dagmara Bialy, Graham Freimanis, John Flannery, Holly Shelton
28 [GO] 2022―Apr―22 Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq Derek Tshiabuila, Jennifer Giandhari, Sureshnee Pillay, Upasana Ramphal, Yajna Ramphal, Arisha Maharaj, et al. (+7)
29 [GO] 2022―Apr―11 DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2 Alexander Yermanos, Kai-Lin Hong, Andreas Agrafiotis, Jiami Han, Sarah Nadeau, Cecilia Valenzuela, et al. (+17)
30 [GO] 2022―Apr―04 Genomic epidemiology of the Los Angeles COVID-19 outbreak and the early history of the B.1.43 strain in the USA Longhua Guo, James Boocock, Evann E. Hilt, Sukantha Chandrasekaran, Yi Zhang, Chetan Munugala, et al. (+11)
31 [GO] 2022―Feb―11 Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences Áine O’Toole, Oliver G. Pybus, Michael E. Abram, Elizabeth J. Kelly, Andrew Rambaut
32 [GO] 2021―Nov―17 A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones Filippo Utro, Chaya Levovitz, Kahn Rhrissorrakrai, Laxmi Parida
33 [GO] 2021―Okt―30 SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels Adriano Di Pasquale, Nicolas Radomski, Iolanda Mangone, Paolo Calistri, Alessio Lorusso, Cesare Cammà
34 [GO] 2021―Jul―14 Whole genome sequencing and phylogenetic analysis of six SARS-CoV-2 strains isolated during COVID-19 pandemic in Tunisia, North Africa Wasfi Fares, Anissa Chouikha, Kais Ghedira, Meriam Gdoura, Dorra Rezig, Sondes Haddad Boubaker, et al. (+14)
35 [GO] 2021―Mai―20 Genomic epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil Vinícius Bonetti Franceschi, Gabriel Dickin Caldana, Amanda de Menezes Mayer, Gabriela Bettella Cybis, Carla Andretta Moreira Neves, Patrícia Aline Gröhs Ferrareze, et al. (+10)
36 [GO] 2021―Mai―17 Population genetic considerations for using biobanks as international resources in the pandemic era and beyond Hannah Carress, Daniel John Lawson, Eran Elhaik
37 [GO] 2021―Mrz―12 Unveiling the long non-coding RNA profile of porcine reproductive and respiratory syndrome virus-infected porcine alveolar macrophages Junxin Gao, Yu Pan, Yunfei Xu, Wenli Zhang, Lin Zhang, Xi Li, et al. (+3)
38 [GO] 2021―Feb―18 SARS-CoV-2 early infection signature identified potential key infection mechanisms and drug targets Yue Li, Ashley Duche, Michael R. Sayer, Don Roosan, Farid G. Khalafalla, Rennolds S. Ostrom, et al. (+2)
39 [GO] 2021―Jan―20 Identification and analysis of long non-coding RNAs and mRNAs in chicken macrophages infected with avian infectious bronchitis coronavirus Hao Li, Pengfei Cui, Xue Fu, Lan Zhang, Wenjun Yan, Yaru Zhai, et al. (+3)
40 [GO] 2020―Dez―04 A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2 Daryl M. Gohl, John Garbe, Patrick Grady, Jerry Daniel, Ray H. B. Watson, Benjamin Auch, et al. (+3)
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