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original article |
Date |
Title |
Authors All Authors |
1 |
[GO] |
2023―Mar―02 |
The Coming of Age of Nucleic Acid Vaccines during COVID-19 |
Halie M. Rando, Ronan Lordan, Likhitha Kolla, Elizabeth Sell, Alexandra J. Lee, Nils Wellhausen, et al. (+56) Amruta Naik, Jeremy P. Kamil, Anthony Gitter, Casey S. Greene, John P. Barton, Simina M. Boca, Joel D. Boerckel, Christian Brr, James Brian Byrd, Stephen Capone, Shikta Capone, Anna Ada Dattoli, John J. Dziak, Jeffrey M. Field, Soumita Ghosh, Anthony Gitter, Rishi Raj Goel, Casey S. Greene, Marouen Ben Guebila, Daniel S. Himmelstein, Fengling Hu, Nafisa M. Jadavji, Jeremy P. Kamil, Sergey Knyazev, Likhitha Kolla, Alexandra J. Lee, Ronan Lordan, Tiago Lubiana, Temitayo Lukan, Adam L. MacLean, David Mai, Serghei Mangul, David Manheim, Lucy D’Agostino McGowan, Jesse G. Meyer, Ariel I. Mundo, Amruta Naik, YoSon Park, Dimitri Perrin, Yanjun Qi, Diane N. Rafizadeh, Bharath Ramsundar, Halie M. Rando, Sandipan Ray, Michael P. Robson, Vincent Rubinetti, Elizabeth Sell, Lamonica Shinholster, Ashwin N. Skelly, Yuchen Sun, Yusha Sun, Gregory L. Szeto, Ryan Velazquez, Jinhui Wang, Nils Wellhausen, Jack A. Gilbert |
2 |
[GO] |
2023―Mar―02 |
Application of Traditional Vaccine Development Strategies to SARS-CoV-2 |
Halie M. Rando, Ronan Lordan, Alexandra J. Lee, Amruta Naik, Nils Wellhausen, Elizabeth Sell, et al. (+56) Likhitha Kolla, Anthony Gitter, Casey S. Greene, Vikas Bansal, John P. Barton, Simina M. Boca, Joel D. Boerckel, Christian Brr, James Brian Byrd, Stephen Capone, Shikta Das, Anna Ada Dattoli, John J. Dziak, Jeffrey M. Field, Soumita Ghosh, Anthony Gitter, Rishi Raj Goel, Casey S. Greene, Marouen Ben Guebila, Daniel S. Himmelstein, Fengling Hu, Nafisa M. Jadavji, Jeremy P. Kamil, Sergey Knyazev, Likhitha Kolla, Alexandra J. Lee, Ronan Lordan, Tiago Lubiana, Temitayo Lukan, Adam L. MacLean, David Mai, Serghei Mangul, David Manheim, Lucy D’Agostino McGowan, Jesse G. Meyer, Ariel I. Mundo, Amruta Naik, YoSon Park, Dimitri Perrin, Yanjun Qi, Diane N. Rafizadeh, Bharath Ramsundar, Halie M. Rando, Sandipan Ray, Michael P. Robson, Vincent Rubinetti, Elizabeth Sell, Lamonica Shinholster, Ashwin N. Skelly, Yuchen Sun, Yusha Sun, Gregory L. Szeto, Ryan Velazquez, Jinhui Wang, Nils Wellhausen, Jack A. Gilbert |
3 |
[GO] |
2022―Dec―12 |
A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants |
Jack Albright, Eran Mick, Estella Sanchez-Guerrero, Jack Kamm, Anthea Mitchell, Angela M. Detweiler, et al. (+10) Norma Neff, Alexandra Tsitsiklis, Paula Hayakawa Serpa, Kalani Ratnasiri, Diane Havlir, Amy Kistler, Joseph L. DeRisi, Angela Oliveira Pisco, Charles R. Langelier, Ileana M. Cristea |
4 |
[GO] |
2022―Jun―15 |
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings |
Victor J. Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, et al. (+30) William Jordan, Menka Asudani, Amanda Walster, Celestine G. Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A. Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L. Lastrella, Elijah S. Lawrence, Toan T. Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W. Smoot, Aaron F. Carlin, Gene W. Yeo, Louise C. Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight, Ileana M. Cristea |
5 |
[GO] |
2022―Jun―15 |
Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings |
Victor J. Cantú, Pedro Belda-Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, William Jordan, et al. (+32) Menka Asudani, Amanda Walster, Celestine G. Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Karenina Sanders, Stefan Aigner, Nathan A. Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Evelyn S. Crescini, Peter De Hoff, Emily Eisner, Abbas Hakim, Bhavika Kapadia, Alma L. Lastrella, Elijah S. Lawrence, Toan T. Ngo, Tyler Ostrander, Shashank Sathe, Phoebe Seaver, Elizabeth W. Smoot, Aaron F. Carlin, Gene W. Yeo, Louise C. Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight, Ileana M. Cristea |
6 |
[GO] |
2022―May―31 |
Obesity: Policy and Practice Recommendations for High-Risk Populations Influenced by the COVID-19 Pandemic |
Kathryn N. Robinson, Deborah A. Saber, Suzanne Lynn Ishaq |
7 |
[GO] |
2022―May―18 |
Stability of SARS-CoV-2-Encoded Proteins and Their Antibody Levels Correlate with Interleukin 6 in COVID-19 Patients |
Wangyang Li, Georgios D. Kitsios, William Bain, Chenxiao Wang, Tiao Li, Kristen V. Fanning, et al. (+6) Rushikesh Deshpande, Xuebin Qin, Alison Morris, Janet S. Lee, Chunbin Zou, Aleksandra Nita-Lazar |
8 |
[GO] |
2022―May―18 |
Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants |
Yiyan Yang, Keith Dufault-Thompson, Rafaela Salgado Fontenele, Xiaofang Jiang, Sergio Baranzini |
9 |
[GO] |
2022―May―16 |
SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with
Rothia
sp. |
Victor J. Cantú, Rodolfo A. Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, et al. (+35) Celestine G. Magallanes, Stefan Aigner, Nathan A. Baer, Tom Barber, Pedro Belda-Ferre, Maryann Betty, MacKenzie Bryant, Martín Casas Maya, Anelizze Castro-Martínez, Marisol Chacón, Willi Cheung, Evelyn S. Crescini, Peter De Hoff, Emily Eisner, Sawyer Farmer, Abbas Hakim, Laura Kohn, Alma L. Lastrella, Elijah S. Lawrence, Sydney C. Morgan, Toan T. Ngo, Alhakam Nouri, Ashley Plascencia, Christopher A. Ruiz, Shashank Sathe, Phoebe Seaver, Tara Shwartz, Elizabeth W. Smoot, R. Tyler Ostrander, Thomas Valles, Gene W. Yeo, Louise C. Laurent, Rebecca Fielding-Miller, Rob Knight, Ileana M. Cristea |
10 |
[GO] |
2022―Mar―21 |
Mapping Data to Deep Understanding: Making the Most of the Deluge of SARS-CoV-2 Genome Sequences |
Bahrad A. Sokhansanj, Gail L. Rosen, Marta M. Gaglia |
11 |
[GO] |
2022―Jan―25 |
Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure” |
Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+27) Ashwin N. Skelly, Elizabeth Sell, John J. Dziak, Lamonica Shinholster, Lucy D’Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M. Boca, Stephen Capone, Yanjun Qi, YoSon Park, David Mai, Yuchen Sun, Joel D. Boerckel, Christian Brr, James Brian Byrd, Jeremy P. Kamil, Jinhui Wang, Ryan Velazquez, Gregory L. Szeto, John P. Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana, Anthony Gitter, Casey S. Greene |
12 |
[GO] |
2021―Nov―23 |
A Genetic Trap in Yeast for Inhibitors of SARS-CoV-2 Main Protease |
Hanna Alalam, Sunniva Sigurdardóttir, Catarina Bourgard, Ievgeniia Tiukova, Ross D. King, Morten Grøtli, et al. (+2) Per Sunnerhagen, Michelle Heck |
13 |
[GO] |
2021―Nov―02 |
Identification and Development of Therapeutics for COVID-19 |
Halie M. Rando, Nils Wellhausen, Soumita Ghosh, Alexandra J. Lee, Anna Ada Dattoli, Fengling Hu, et al. (+18) James Brian Byrd, Diane N. Rafizadeh, Ronan Lordan, Yanjun Qi, Yuchen Sun, Christian Brr, Jeffrey M. Field, Marouen Ben Guebila, Nafisa M. Jadavji, Ashwin N. Skelly, Bharath Ramsundar, Jinhui Wang, Rishi Raj Goel, YoSon Park, Simina M. Boca, Anthony Gitter, Casey S. Greene, Jack A. Gilbert |
14 |
[GO] |
2021―Nov―02 |
Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs |
Rodolfo A. Salido, Victor J. Cantú, Alex E. Clark, Sandra L. Leibel, Anahid Foroughishafiei, Anushka Saha, et al. (+38) Abbas Hakim, Alhakam Nouri, Alma L. Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika K. Kapadia, Bing Xia, Christopher A. Ruiz, Clarisse A. Marotz, Daniel Maunder, Elijah S. Lawrence, Elizabeth W. Smoot, Emily Eisner, Evelyn S. Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A. Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R. Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C. Morgan, Toan T. Ngo, Tom Barber, Willi Cheung, Aaron F. Carlin, Gene W. Yeo, Louise C. Laurent, Rebecca Fielding-Miller, Rob Knight, Marta M. Gaglia |
15 |
[GO] |
2021―Oct―26 |
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure |
Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+28) Ashwin N. Skelly, Elizabeth Sell, John J. Dziak, Lamonica Shinholster, Lucy D’Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M. Boca, Stephen Capone, Yanjun Qi, YoSon Park, David Mai, Yuchen Sun, Joel D. Boerckel, Christian Brr, James Brian Byrd, Jeremy P. Kamil, Jinhui Wang, Ryan Velazquez, Gregory L. Szeto, John P. Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana, Anthony Gitter, Casey S. Greene, Jack A. Gilbert |
16 |
[GO] |
2021―Oct―26 |
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure |
Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+28) Ashwin N. Skelly, Elizabeth Sell, John J. Dziak, Lamonica Shinholster, Lucy D’Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M. Boca, Stephen Capone, Yanjun Qi, YoSon Park, David Mai, Yuchen Sun, Joel D. Boerckel, Christian Brr, James Brian Byrd, Jeremy P. Kamil, Jinhui Wang, Ryan Velazquez, Gregory L. Szeto, John P. Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana, Anthony Gitter, Casey S. Greene, Jack A. Gilbert |
17 |
[GO] |
2021―Oct―19 |
Assessing Multiplex Tiling PCR Sequencing Approaches for Detecting Genomic Variants of SARS-CoV-2 in Municipal Wastewater |
Xuan Lin, Melissa Glier, Kevin Kuchinski, Tenysha Ross-Van Mierlo, David McVea, John R. Tyson, et al. (+3) Natalie Prystajecky, Ryan M. Ziels, Ileana M. Cristea |
18 |
[GO] |
2021―Sep―14 |
High-Frequency, High-Throughput Quantification of SARS-CoV-2 RNA in Wastewater Settled Solids at Eight Publicly Owned Treatment Works in Northern California Shows Strong Association with COVID-19 Incidence |
Marlene K. Wolfe, Aaron Topol, Alisha Knudson, Adrian Simpson, Bradley White, Duc J. Vugia, et al. (+8) Alexander T. Yu, Linlin Li, Michael Balliet, Pamela Stoddard, George S. Han, Krista R. Wigginton, Alexandria B. Boehm, Charles R. Langelier |
19 |
[GO] |
2021―Aug―10 |
Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus |
Smruthi Karthikeyan, Andrew Nguyen, Daniel McDonald, Yijian Zong, Nancy Ronquillo, Junting Ren, et al. (+11) Jingjing Zou, Sawyer Farmer, Greg Humphrey, Diana Henderson, Tara Javidi, Karen Messer, Cheryl Anderson, Robert Schooley, Natasha K. Martin, Rob Knight, John McGrath |
20 |
[GO] |
2021―Aug―03 |
Catching SARS-CoV-2 by Sequence Hybridization: a Comparative Analysis |
Alexandra Rehn, Peter Braun, Mandy Knüpfer, Roman Wölfel, Markus H. Antwerpen, Mathias C. Walter, Rachel Mackelprang |
21 |
[GO] |
2021―Jul―27 |
Pathophysiology of SARS-CoV-2 Infection in the Upper Respiratory Tract and Its Relation to Breath Volatile Organic Compounds |
Moria Lichtenstein, Sondra Turjerman, Jayant M. Pinto, Orna Barash, Omry Koren, Jotham Suez |
22 |
[GO] |
2021―Jul―27 |
Teaching with Microbes: Lessons from Fermentation during a Pandemic |
Megan A. Carney, Suzanne Lynn Ishaq |
23 |
[GO] |
2021―Jul―13 |
RNA-Protein Interaction Analysis of SARS-CoV-2 5′ and 3′ Untranslated Regions Reveals a Role of Lysosome-Associated Membrane Protein-2a during Viral Infection |
Rohit Verma, Sandhini Saha, Shiv Kumar, Shailendra Mani, Tushar Kanti Maiti, Milan Surjit, Marta M. Gaglia |
24 |
[GO] |
2021―Jun―15 |
Rapid Increase of SARS-CoV-2 Variant B.1.1.7 Detected in Sewage Samples from England between October 2020 and January 2021 |
Thomas Wilton, Erika Bujaki, Dimitra Klapsa, Manasi Majumdar, Maria Zambon, Martin Fritzsche, et al. (+3) Ryan Mate, Javier Martin, Charles R. Langelier |
25 |
[GO] |
2021―May―10 |
Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment |
Ronan Lordan, Halie M. Rando, Casey S. Greene, Jack A. Gilbert |
26 |
[GO] |
2021―Apr―24 |
COVID-19 Pandemic in Lebanon: One Year Later, What Have We Learnt? |
Jad Koweyes, Tamara Salloum, Siwar Haidar, Georgi Merhi, Sima Tokajian, Suleyman Yildirim |
27 |
[GO] |
2021―Apr―19 |
Indoor Dust as a Matrix for Surveillance of COVID-19 |
Nicole Renninger, Nicholas Nastasi, Ashleigh Bope, Samuel J. Cochran, Sarah R. Haines, Neeraja Balasubrahmaniam, et al. (+6) Katelyn Stuart, Aaron Bivins, Kyle Bibby, Natalie M. Hull, Karen C. Dannemiller, Angela D. Kent |
28 |
[GO] |
2021―Mar―08 |
High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County |
Smruthi Karthikeyan, Nancy Ronquillo, Pedro Belda-Ferre, Destiny Alvarado, Tara Javidi, Christopher A. Longhurst, et al. (+2) Rob Knight, Ileana M. Cristea |
29 |
[GO] |
2021―Feb―23 |
Comparative Genomics and Integrated Network Approach Unveiled Undirected Phylogeny Patterns, Co-mutational Hot Spots, Functional Cross Talk, and Regulatory Interactions in SARS-CoV-2 |
Vipin Gupta, Shazia Haider, Mansi Verma, Nirjara Singhvi, Kalaisaran Ponnusamy, Md. Zubbair Malik, et al. (+8) Helianthous Verma, Roshan Kumar, Utkarsh Sood, Princy Hira, Shiva Satija, Yogendra Singh, Rup Lal, Paola Flórez de Sessions |
30 |
[GO] |
2020―Dec―01 |
Coordinating and Assisting Research at the SARS-CoV-2/Microbiome Nexus |
|
31 |
[GO] |
2020―Nov―02 |
Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients |
Rodolfo A. Salido, Sydney C. Morgan, Maria I. Rojas, Celestine G. Magallanes, Clarisse Marotz, Peter DeHoff, et al. (+9) Pedro Belda-Ferre, Stefan Aigner, Deborah M. Kado, Gene W. Yeo, Jack A. Gilbert, Louise Laurent, Forest Rohwer, Rob Knight, Paola Flórez de Sessions |
32 |
[GO] |
2020―Oct―06 |
End-to-End Protocol for the Detection of SARS-CoV-2 from Built Environments |
Ceth W. Parker, Nitin Singh, Scott Tighe, Adriana Blachowicz, Jason M. Wood, Arman Seuylemezian, et al. (+12) Parag Vaishampayan, Camilla Urbaniak, Ryan Hendrickson, Pheobe Laaguiby, Kevin Clark, Brian G. Clement, Niamh B. O’Hara, Mara Couto-Rodriguez, Daniela Bezdan, Christopher E. Mason, Kasthuri Venkateswaran, Sean M. Gibbons |
33 |
[GO] |
2020―Sep―21 |
In Silico Structure-Based Repositioning of Approved Drugs for Spike Glycoprotein S2 Domain Fusion Peptide of SARS-CoV-2: Rationale from Molecular Dynamics and Binding Free Energy Calculations |
Nishant Shekhar, Phulen Sarma, Manisha Prajapat, Pramod Avti, Hardeep Kaur, Anupam Raja, et al. (+7) Harvinder Singh, Anusuya Bhattacharya, Saurabh Sharma, Subodh Kumar, Ajay Prakash, Bikash Medhi, Ileana M. Cristea |
34 |
[GO] |
2020―Sep―01 |
Low Baseline Pulmonary Levels of Cytotoxic Lymphocytes as a Predisposing Risk Factor for Severe COVID-19 |
Pascal H. G. Duijf, Paola Flórez de Sessions |
35 |
[GO] |
2020―Aug―17 |
Oscillatory Dynamics in Infectivity and Death Rates of COVID-19 |
Tomáš Pavlíček, Pavel Rehak, Petr Král, Jack A. Gilbert |
36 |
[GO] |
2020―Jul―27 |
Comparative Genomic Analysis of Rapidly Evolving SARS-CoV-2 Reveals Mosaic Pattern of Phylogeographical Distribution |
Roshan Kumar, Helianthous Verma, Nirjara Singhvi, Utkarsh Sood, Vipin Gupta, Mona Singh, et al. (+12) Rashmi Kumari, Princy Hira, Shekhar Nagar, Chandni Talwar, Namita Nayyar, Shailly Anand, Charu Dogra Rawat, Mansi Verma, Ram Krishan Negi, Yogendra Singh, Rup Lal, Ileana M. Cristea |
37 |
[GO] |
2020―Jul―21 |
COVID-19 and the Gut Microbiome: More than a Gut Feeling |
Daniel van der Lelie, Safiyh Taghavi, Ileana M. Cristea |
38 |
[GO] |
2020―Jul―21 |
SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases |
Fuqing Wu, Jianbo Zhang, Amy Xiao, Xiaoqiong Gu, Wei Lin Lee, Federica Armas, et al. (+14) Kathryn Kauffman, William Hanage, Mariana Matus, Newsha Ghaeli, Noriko Endo, Claire Duvallet, Mathilde Poyet, Katya Moniz, Alex D. Washburne, Timothy B. Erickson, Peter R. Chai, Janelle Thompson, Eric J. Alm, Jack A. Gilbert |
39 |
[GO] |
2020―Jul―13 |
Oscillations in U.S. COVID-19 Incidence and Mortality Data Reflect Diagnostic and Reporting Factors |
Aviv Bergman, Yehonatan Sella, Peter Agre, Arturo Casadevall, John F. Rawls |
40 |
[GO] |
2020―Jun―22 |
Reply to McDonald, “Protections against the Risk of Airborne SARS-CoV-2 Infection” |
Leslie Dietz, Patrick F. Horve, David A. Coil, Mark Fretz, Jonathan A. Eisen, Kevin Van Den Wymelenberg |
41 |
[GO] |
2020―Jun―19 |
Protections against the Risk of Airborne SARS-CoV-2 Infection |
Clement J. McDonald, Jack A. Gilbert |
42 |
[GO] |
2020―May―05 |
Correction for Dietz et al., “2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission” |
Leslie Dietz, Patrick F. Horve, David A. Coil, Mark Fretz, Jonathan A. Eisen, Kevin Van Den Wymelenberg |
43 |
[GO] |
2020―May―05 |
SARS-CoV-2 and ORF3a: Nonsynonymous Mutations, Functional Domains, and Viral Pathogenesis |
Elio Issa, Georgi Merhi, Balig Panossian, Tamara Salloum, Sima Tokajian, Jack A. Gilbert |
44 |
[GO] |
2020―Apr―13 |
Repurposing Didanosine as a Potential Treatment for COVID-19 Using Single-Cell RNA Sequencing Data |
Fadhl M. Alakwaa, Jack A. Gilbert |
45 |
[GO] |
2020―Apr―06 |
2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission |
Leslie Dietz, Patrick F. Horve, David A. Coil, Mark Fretz, Jonathan A. Eisen, Kevin Van Den Wymelenberg, Jack A. Gilbert |
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