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COVID answers in Scientific Journals all over the world


56 Results       Page 1

 [1] 
Oxford University Press: Virus Evolution
  original article Date Title Authors   All Authors
1 [GO] 2024―Apr―04 Correction to: Fitness effects of mutations to SARS-CoV-2 proteins
2 [GO] 2024―Mar―05 Evolutionary trajectory of diverse SARS-CoV-2 variants at the beginning of COVID-19 outbreak. Jia-Xin Lv, Xiang Liu, Yuan-Yuan Pei, Zhi-Gang Song, Xiao Chen, Shu-Jian Hu, et al. (+4)
3 [GO] 2024―Feb―09 Genomic Surveillance and Evolutionary Dynamics of Type-2 Porcine Reproductive and Respiratory Syndrome Virus in China Spanning the African Swine Fever Outbreak Zhiyong Wu, Tong Chang, Decheng Wang, Hongliang Zhang, Haizhou Liu, Xinyi Huang, et al. (+5)
4 [GO] 2024―Jan―05 Genetic consequences of effective and suboptimal dosing with mutagenic drugs in a hamster model of SARS-CoV-2 infection Christopher J. R Illingworth, Jose A Guerra-Assuncao, Samuel Gregg, Oscar Charles, Juanita Pang, Sunando Roy, et al. (+3)
5 [GO] 2023―Dec―18 Tracing the adaptive evolution of SARS-CoV-2 during vaccine roll-out in Norway Ignacio Garcia, Yunsung Lee, Ola Brynildsrud, Vegard Eldholm, Per Magnus, Anita Blomfeldt, et al. (+4)
6 [GO] 2023―Aug―09 Association between SARS-CoV-2 and metagenomic content of samples from the Huanan Seafood Market Jesse D Bloom
7 [GO] 2023―Jun―29 Evolutionary changes in the number of dissociable amino acids on spike proteins and nucleoproteins of SARS-CoV-2 variants Anže Božič, Rudolf Podgornik
8 [GO] 2023―Mar―14 Natural selection differences detected in key protein domains between non-pathogenic and pathogenic Feline Coronavirus phenotypes Jordan D Zehr, Sergei L Kosakovsky Pond, Jean K Millet, Ximena A Olarte-Castillo, Alexander G Lucaci, Stephen D Shank, et al. (+5)
9 [GO] 2023―Jan―17 Emergence and pandemic spread of small ruminant lentiviruses. Maria-Luisa Carrozza, Anna-Maria Niewiadomska, Maurizio Mazzei, Mounir R Abi-Said, Stéphane Hué, Joseph Hughes, et al. (+2)
10 [GO] 2023―Jan―10 Evolutionary rate of SARS-CoV-2 increases during zoonotic infection of farmed mink Ashleigh F Porter, Damian F J Purcell, Benjamin P Howden, Sebastian Duchene
11 [GO] 2022―Dec―30 Correction to: The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK
12 [GO] 2022―Dec―16 Genomic epidemiology of SARS-CoV-2 in Cambodia, January 2020 to February 2021 Yvonne C F Su, Jordan Z J Ma, Tey Putita Ou, Leakhena Pum, Sidonn Krang, Philomena Raftery, et al. (+30)
13 [GO] 2022―Dec―05 Contributions of adaptation and purifying selection to SARS-CoV-2 evolution Richard A Neher
14 [GO] 2022―Dec―02 Genome evolution and early introductions of the SARS-CoV-2 Omicron Variant in Mexico Hugo G Castelán-Sánchez, León P Martínez-Castilla, Gustavo Sganzerla-Martínez, Jesús Torres-Flores, Gamaliel López-Leal
15 [GO] 2022―Nov―29 SARS-CoV-2 Intra-Host Single-Nucleotide Variants associated with disease severity Yi Zhang, Ning Jiang, Weiqiang Qi, Tao Li, Yumeng Zhang, Jing Wu, et al. (+13)
16 [GO] 2022―Nov―05 Evolution of a globally unique SARS-CoV-2 Spike E484T monoclonal antibody escape mutation in a persistently infected, immunocompromised individual Peter J Halfmann, Nicholas R Minor, Luis A Haddock III, Robert Maddox, Gage K Moreno, Katarina M Braun, et al. (+15)
17 [GO] 2022―Sep―30 Rapid evolution of SARS-CoV-2 in domestic cats Laura Bashor, Roderick B Gagne, Angela Bosco-Lauth, Mark Stenglein, Sue VandeWoude
18 [GO] 2022―Sep―22 Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron Christiaan van Dorp, Emma Goldberg, Ruian Ke, Nick Hengartner, Ethan Romero-Severson
19 [GO] 2022―Aug―26 The Origins and Molecular Evolution of SARS-CoV-2 Lineage B.1.1.7 in the UK Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alesandro M Carabelli, et al. (+23)
20 [GO] 2022―Aug―20 Lineage BA.2 Dominated the Omicron SARS-CoV-2 Epidemic Wave in the Philippines Yao-Tsun Li, Francisco Gerardo M Polotan, Gerald Ivan S Sotelo, Anne Pauline A Alpino, Ardiane Ysabelle M Dolor, Ma Angelica A Tujan, et al. (+27)
21 [GO] 2022―Aug―11 Recurrent SARS-CoV-2 mutations in immunodeficient patients S A J Wilkinson, Alex Richter, Anna Casey, Husam Osman, Jeremy D Mirza, Joanne Stockton, et al. (+10)
22 [GO] 2022―Aug―06 covSampler: A Subsampling Method with Balanced Genetic Diversity for Large-Scale SARS-CoV-2 Genome Data Sets Yexiao Cheng, Chengyang Ji, Na Han, Jiaying Li, Lin Xu, Ziyi Chen, et al. (+3)
23 [GO] 2022―Jul―27 A Single Early Introduction Governed Viral Diversity in the Second Wave of SARS-CoV-2 Epidemic in Hungary Eszter Ari, Bálint Márk Vásárhelyi, Gábor Kemenesi, Gábor Endre Tóth, Brigitta Zana, Balázs Somogyi, et al. (+5)
24 [GO] 2022―Jul―27 Tracking the Turnover of SARS-CoV-2 VOCs Gamma to Delta in a Brazilian State (Minas Gerais) with a High-Vaccination Status Paula L C Fonseca, Filipe R R Moreira, Rafael M de Souza, Natália R Guimarães, Nara O Carvalho, Talita E R Adelino, et al. (+46)
25 [GO] 2022―Jul―22 Evolution of ACE2-Independent SARS-CoV-2 Infection and Mouse Adaption After Passage in Cells Expressing Human and Mouse ACE2 Kexin Yan, Troy Dumenil, Bing Tang, Thuy T Le, Cameron R Bishop, Andreas Suhrbier, Daniel J Rawle
26 [GO] 2022―Jun―21 Identification of Coronaviruses in Farmed Wild Animals Reveals their Evolutionary Origins in Guangdong, Southern China Xiaohu Wang, Zhaowen Ren, Lu Wang, Jing Chen, Pian Zhang, Jin-Ping Chen, et al. (+20)
27 [GO] 2022―Jun―16 Narrow Transmission Bottlenecks and Limited Within-Host Viral Diversity During a SARS-CoV-2 Outbreak on a Fishing Boat William W Hannon, Pavitra Roychoudhury, Hong Xie, Lasata Shrestha, Amin Addetia, Keith R Jerome, et al. (+2)
28 [GO] 2022―Jun―16 Identifying SARS-CoV-2 Regional Introductions and Transmission Clusters in Real Time Jakob McBroome, Jennifer Martin, Adriano de Bernardi Schneider, Yatish Turakhia, Russell Corbett-Detig
29 [GO] 2022―Jun―14 Conserved Recombination Patterns Across Coronavirus Subgenera Arné de Klerk, Phillip Swanepoel, Rentia Lourens, Mpumelelo Zondo, Isaac Abodunran, Spyros Lytras, et al. (+9)
30 [GO] 2022―Jun―04 Coronaviruses in Wild Animals Sampled in and Around Wuhan in the Beginning of COVID-19 Emergence Wen Wang, Jun-Hua Tian, Xiao Chen, Rui-Xue Hu, Xian-Dan Lin, Yuan-Yuan Pei, et al. (+6)
31 [GO] 2022―May―21 Competition for Dominance Within Replicating Quasispecies During Prolonged SARS-CoV-2 Infection in an Immunocompromised Host Francesca Caccuri, Serena Messali, Daria Bortolotti, Dario Di Silvestre, Antonella De Palma, Chiara Cattaneo, et al. (+17)
32 [GO] 2022―May―18 Comparative Phylodynamics Reveals the Evolutionary History of SARS-CoV-2 Emerging Variants in the Arabian Peninsula Moh A Alkhamis, Nicholas M Fountain-Jones, Mohammad M Khajah, Mohammad Alghounaim, Salman K Al-Sabah
33 [GO] 2022―Apr―07 Molecular-Epidemiological Features of SARS-CoV-2 in Japan, 2020-2021 Hirotaka Ode, Yoshihiro Nakata, Mami Nagashima, Masaki Hayashi, Takako Yamazaki, Hiroyuki Asakura, et al. (+10)
34 [GO] 2022―Apr―07 Genomic Characterisation Reveals a Dominant Lineage of SARS-CoV-2 in Papua New Guinea Theresa Palou, Mathilda Wilmot, Sebastian Duchene, Ashleigh Porter, Ms Janlyn Kemoi, Dagwin Suarkia, et al. (+15)
35 [GO] 2022―Mar―22 Large-Scale Analysis of SARS-CoV-2 Synonymous Mutations Reveals the Adaptation to the Human Codon Usage During the Virus Evolution Daniele Ramazzotti, Fabrizio Angaroni, Davide Maspero, Mario Mauri, Deborah D’Aliberti, Diletta Fontana, et al. (+4)
36 [GO] 2022―Mar―18 The Early SARS-CoV-2 Epidemic in Senegal was Driven by the Local Emergence of B.1.416 and the Introduction of B.1.1.420 from Europe Lester J Perez, Gregory S Orf, Michael G Berg, Mary A Rodgers, Todd V Meyer, Aurash Mohaimani, et al. (+12)
37 [GO] 2022―Mar―17 Replacement of the Gamma by the Delta variant in Brazil: impact of lineage displacement on the ongoing pandemic Marta Giovanetti, Vagner Fonseca, Eduan Wilkinson, Houriiyah Tegally, Emmanuel James San, Christian L Althaus, et al. (+22)
38 [GO] 2022―Mar―17 Tracking SARS-CoV-2 Mutations & Variants Through the COG-UK-Mutation Explorer Derek W Wright, William T Harvey, Joseph Hughes, MacGregor Cox, Thomas P Peacock, Rachel Colquhoun, et al. (+10)
39 [GO] 2022―Mar―14 An Antibody-Escape Estimator for Mutations to the SARS-CoV-2 Receptor-Binding Domain Allison J Greaney, Tyler N Starr, Jesse D Bloom
40 [GO] 2022―Mar―05 The Rise and Spread of the SARS-CoV-2 AY.122 Lineage in Russia Galya V Klink, Ksenia R Safina, Elena Nabieva, Nikita Shvyrev, Sofya Garushyants, Evgeniia Alekseeva, et al. (+17)
41 [GO] 2022―Feb―15 Unrecognized Introductions of SARS-CoV-2 into the U.S. State of Georgia Shaped the Early Epidemic Ahmed Babiker, Michael A Martin, Charles Marvil, Stephanie Bellman, Robert A Petit III, Heath L Bradley, et al. (+10)
42 [GO] 2022―Feb―14 Emergence and Spread of a Sub-Lineage of SARS-CoV-2 Alpha variant B.1.1.7 in Europe, and with Further Evolution of Spike Mutation Accumulations Shared with the Beta and Gamma Variants Marlena Stadtmüller, Alexa Laubner, Fabian Rost, Sylke Winkler, Eva Patrasová, Lenka Šimůnková, et al. (+4)
43 [GO] 2021―Dec―31 Sequencing SARS-CoV-2 Genomes from Saliva Tara Alpert, Chantal B F Vogels, Mallery I Breban, Mary E Petrone, Anne L Wyllie, Nathan D Grubaugh, Joseph R Fauver
44 [GO] 2021―Dec―11 A Comprehensive Evolutionary and Epidemiological Characterization of Insertion and Deletion Mutations in SARS-CoV-2 Genomes Xue Liu, Liping Guo, Tiefeng Xu, Xiaoyu Lu, Mingpeng Ma, Wenyu Sheng, et al. (+9)
45 [GO] 2021―Sep―30 Epidemiological Dynamics of SARS-CoV-2 VOC Gamma in Rio de Janeiro, Brazil Filipe Romero Rebello Moreira, Mirela D’arc, Diana Mariani, Alice Laschuk Herlinger, Francine Bittencourt Schiffler, Átila Duque Rossi, et al. (+14)
46 [GO] 2021―Sep―22 The Impact of Global Lineage Dynamics, Border Restrictions and Emergence of the B.1.1.7 Lineage on the SARS-CoV-2 Epidemic in Norway Magnus N Osnes, Kristian Alfsnes, Jon Bråte, Ignacio Garcia Llorente, Rasmus K Riis, Kamilla H Instefjord, et al. (+10)
47 [GO] 2021―Aug―08 Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses Matthew Cotten, David L Robertson, My V T Phan
48 [GO] 2021―Jul―05 Assignment of Epidemiological Lineages in an Emerging Pandemic Using the Pangolin Tool Áine O’Toole, Emily Scher, Anthony Underwood, Ben Jackson, Verity Hill, John T McCrone, et al. (+13)
49 [GO] 2021―Jun―23 Adaptation of the Endemic Coronaviruses HCoV-OC43 and HCoV-229E to the Human Host Diego Forni, Rachele Cagliani, Federica Arrigoni, Martino Benvenuti, Alessandra Mozzi, Uberto Pozzoli, et al. (+3)
50 [GO] 2021―Jun―15 Recombinant SARS-CoV-2 Genomes Circulated at Low Levels Over The First Year of The Pandemic David VanInsberghe, Andrew S Neish, Anice C Lowen, Katia Koelle
51 [GO] 2021―Jun―08 Phylodynamics Reveals the Role of Human Travel and Contact Tracing in Controlling the First Wave of COVID-19 in Four Island Nations Jordan Douglas, Fábio K Mendes, Remco Bouckaert, Dong Xie, Cinthy L Jiménez-Silva, Christiaan Swanepoel, et al. (+8)
52 [GO] 2021―Jun―05 Coordinating SARS-CoV-2 Genomic Surveillance in the United States Martha I Nelson, Peter Thielen
53 [GO] 2021―Jun―03 Genomic Epidemiology of SARS-CoV-2 Transmission Lineages in Ecuador Bernardo Gutierrez, Sully Márquez, Belén Prado-Vivar, Mónica Becerra-Wong, Juan José Guadalupe, Darlan da Silva Candido, et al. (+32)
54 [GO] 2021―May―28 Slippery When wet: Cross-Species Transmission of Divergent Coronaviruses in Bony and Jawless Fish and The Evolutionary History of the Coronaviridae Allison K Miller, Jonathon C O Mifsud, Vincenzo A Costa, Rebecca M Grimwood, Jane Kitson, Cindy Baker, et al. (+5)
55 [GO] 2021―Feb―15 Unification and extensive diversification of M/ORF3-related ion channel proteins in coronaviruses and other nidoviruses Yongjun Tan, Theresa Schneider, Prakash K Shukla, Mahesh B Chandrasekharan, L Aravind, Dapeng Zhang
56 [GO] 2021―Feb―15 SARS-CoV-2 genomic analyses in cancer patients reveal elevated intrahost genetic diversity Juliana D Siqueira, Livia R Goes, Brunna M Alves, Pedro S de Carvalho, Claudia Cicala, James Arthos, et al. (+3)
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56 Results       Page 1


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