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COVID answers in Scientific Journals all over the world


58 Results       Page 1

 [1] 
Oxford University Press: Nucleic Acids Research
  original article Date Title Authors   All Authors
1 [GO] 2025―Aug―27 Structural basis for small molecule binding to the SARS-CoV-2 nsp10-nsp14 ExoN complex
2 [GO] 2025―Jul―01 SARS-CoV-2 Nsp2 recruits GIGYF2 near viral replication sites and supports viral protein production Jimi Kim, Youngran Park, Doil Yoon, Sunghan Lee, Haedong Kim, Ka-Yun Ban, et al. (+5)
3 [GO] 2025―Jun―30 Structural heterogeneity and dynamics in the apical stem loop of s2m from SARS-CoV-2 Delta by an integrative NMR spectroscopy and MD simulation approach Maria A Wirtz Martin, Joseph A Makowski, Tobias Matzel, Adam H Kensinger, Alexander Herr, Christian Richter, et al. (+4)
4 [GO] 2025―Jun―12 The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure Hugh K Haddox, Georg Angehrn, Luca Sesta, Chris Jennings-Shaffer, Seth D Temple, Jared G Galloway, et al. (+5)
5 [GO] 2025―Jun―04 A post-assembly conformational change makes the SARS-CoV-2 polymerase elongation-competent Misha Klein, Arnab Das, Subhas C Bera, Thomas K Anderson, Dana Kocincova, Hery W Lee, et al. (+11)
6 [GO] 2025―May―31 Screening of metallohelices for enantioselective targeting SARS-CoV-2 RNA G-quadruplex Yue Sun, Chuanqi Zhao, Yan Liu, Yibo Wang, Cheng Zhang, Jie Yang, et al. (+6)
7 [GO] 2025―May―28 Dynamic ensembles of SARS-CoV-2 N-protein reveal head-to-head coiled-coil-driven oligomerization and phase separation Guillem Hernandez, Maria L Martins, Nuno P Fernandes, Tiago Veloso, João Lopes, Tiago Gomes, Tiago N Cordeiro
8 [GO] 2025―May―27 SARS-CoV-2 point mutations are over-represented in terminal loops of RNA stem-loop structures that can be resolved by Nsp13 helicase in a unique manner with respect to nucleotide dependence Adaira J Dumm, Andrew Y Zheng, Thomas J Butler, Tomasz Kulikowicz, Joe C George, Pierce T Bombard, et al. (+3)
9 [GO] 2025―Apr―17 Mechanistic insights into the activity of SARS-CoV-2 RNA polymerase inhibitors using single-molecule FRET Danielle Groves, Rory Cunnison, Andrew McMahon, Haitian Fan, Jane Sharps, Adrian Deng, et al. (+3)
10 [GO] 2025―Apr―08 The differential effect of SARS-CoV-2 NSP1 on mRNA translation and stability reveals new insights linking ribosome recruitment, codon usage, and virus evolution Juan José Berlanga, Tania Matamoros, Miguel Rodríguez Pulido, Margarita Sáiz, Mercedes Núñez Bayón, René Toribio, Iván Ventoso
11 [GO] 2025―Mar―05 Tuning the tropism and infectivity of SARS-CoV-2 virus-like particles for mRNA delivery Qi Yang, Bruce A Davidson, Petar Pajic, Xuyang Chen, Omer Gokcumen, Min Gao, Sriram Neelamegham
12 [GO] 2025―Feb―20 Virus-derived siRNA: Coronavirus and influenza virus trigger antiviral RNAi immunity in birds Yaotang Wu, Peng Liu, Jie Zhou, Mei Fu, Chenlu Wang, Ningna Xiong, et al. (+4)
13 [GO] 2025―Feb―19 Using minor variant genomes and machine learning to study the genome biology of SARS-CoV-2 over time Xiaofeng Dong, David A Matthews, Giulia Gallo, Alistair Darby, I’ah Donovan-Banfield, Hannah Goldswain, et al. (+6)
14 [GO] 2025―Jan―29 A novel ADP-directed chaperone function facilitates the ATP-driven motor activity of SARS-CoV helicase Jeongmin Yu, Hyeryeon Im, HyeokJin Cho, Yongmoon Jeon, Jong-Bong Lee, Gwangrog Lee
15 [GO] 2025―Jan―20 The SARS-CoV-2 nucleocapsid protein interferes with the full enzymatic activation of UPF1 and its interaction with UPF2 Veronica Nuccetelli, Makram Mghezzi-Habellah, Séverine Deymier, Armelle Roisin, Francine Gérard-Baraggia, Cecilia Rocchi, et al. (+5)
16 [GO] 2024―Dec―11 High resistance barrier and prophylactic protection in preclinical models of SARS-CoV-2 with two siRNA combination Yesseinia I Anglero-Rodriguez, Florian A Lempp, Megha Subramanian, James McIninch, Mark K Schlegel, Dana Bohan, et al. (+37)
17 [GO] 2024―Oct―30 Alternative substrate kinetics of SARS-CoV-2 Nsp15 endonuclease reveals a specificity landscape dominated by RNA structure Nidhi Kalia, Kimberly C Snell, Michael E Harris
18 [GO] 2024―Oct―24 Coronavirus S protein alters dsRNA accumulation and stress granule formation through regulation of ADAR1-p150 expression Baochao Fan, Yupeng Li, Yi Wang, Shanshan Yang, Qi Peng, Jiali Qian, et al. (+15)
19 [GO] 2024―Oct―09 A compact stem-loop DNA aptamer targets a uracil-binding pocket in the SARS-CoV-2 nucleocapsid RNA-binding domain Morgan A Esler, Christopher A Belica, Joseph A Rollie, William L Brown, Seyed Arad Moghadasi, Ke Shi, et al. (+3)
20 [GO] 2024―Oct―03 Modulation of UPF1 catalytic activity upon interaction of SARS-CoV-2 Nucleocapsid protein with factors involved in nonsense mediated-mRNA decay Megha Mallick, Volker Boehm, Guangpu Xue, Mark Blackstone, Niels H Gehring, Sutapa Chakrabarti
21 [GO] 2024―Jun―18 Correction to ‘Structure of an internal loop motif with three consecutive U·U mismatches from stem-loop 1 in the 3′-UTR of the SARS-CoV-2 genomic RNA’
22 [GO] 2024―Jun―06 The 5′-terminal stem-loop RNA element of SARS-CoV-2 features highly dynamic structural elements that are sensitive to differences in cellular pH Sabrina Toews, Anna Wacker, Edgar M Faison, Elke Duchardt-Ferner, Christian Richter, Daniel Mathieu, et al. (+3)
23 [GO] 2024―May―24 Structure of an internal loop motif with three consecutive U•U mismatches from stem-loop 1 in the 3′-UTR of the SARS-CoV-2 genomic RNA Jennifer Vögele, Elke Duchardt-Ferner, Jasleen Kaur Bains, Bozana Knezic, Anna Wacker, Christian Sich, et al. (+5)
24 [GO] 2024―Apr―18 SARS-CoV-2 nsp15 preferentially degrades AU-rich dsRNA via its dsRNA nickase activity Xionglue Wang, Bin Zhu
25 [GO] 2024―Apr―08 Assembly of SARS-CoV-2 nucleocapsid protein with nucleic acid Huaying Zhao, Abdullah M Syed, Mir M Khalid, Ai Nguyen, Alison Ciling, Di Wu, et al. (+7)
26 [GO] 2024―Mar―19 Despite the odds: formation of the SARS-CoV-2 methylation complex Alex Matsuda, Jacek Plewka, Michał Rawski, André Mourão, Weronika Zajko, Till Siebenmorgen, et al. (+19)
27 [GO] 2024―Feb―01 Identification of Hammerhead-variant ribozyme sequences in SARS-CoV-2 Getong Liu, Hengyi Jiang, Dongrong Chen, Alastair I H Murchie
28 [GO] 2023―Dec―28 The disordered N-terminal tail of SARS-CoV-2 Nucleocapsid protein forms a dynamic complex with RNA Jasmine Cubuk, Jhullian J Alston, J Jeremías Incicco, Alex S Holehouse, Kathleen B Hall, Melissa D Stuchell-Brereton, Andrea Soranno
29 [GO] 2023―Dec―14 An exonuclease-resistant chain-terminating nucleotide analogue targeting the SARS-CoV-2 replicase complex Ashleigh Shannon, Aurélie Chazot, Mikael Feracci, Camille Falcou, Véronique Fattorini, Barbara Selisko, et al. (+6)
30 [GO] 2023―Nov―13 A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort Daniel Beltrán, Adam Hospital, Josep Lluís Gelpí, Modesto Orozco
31 [GO] 2023―Oct―28 COV2Var, a function annotation database of SARS-CoV-2 genetic variation Yuzhou Feng, Jiahao Yi, Lin Yang, Yanfei Wang, Jianguo Wen, Weiling Zhao, et al. (+2)
32 [GO] 2023―Oct―11 Atomistic structure of the SARS-CoV-2 pseudoknot in solution from SAXS-driven molecular dynamics Weiwei He, Josue San Emeterio, Michael T Woodside, Serdal Kirmizialtin, Lois Pollack
33 [GO] 2023―Oct―04 High-resolution structure of stem-loop 4 from the 5′-UTR of SARS-CoV-2 solved by solution state NMR Jennifer Vögele, Daniel Hymon, Jason Martins, Jan Ferner, Hendrik R A Jonker, Amanda E Hargrove, et al. (+5)
34 [GO] 2023―Sep―08 Unfolding of an RNA G-quadruplex motif in the negative strand genome of porcine reproductive and respiratory syndrome virus by host and viral helicases to promote viral replication Puxian Fang, Congbao Xie, Ting Pan, Ting Cheng, Wei Chen, Sijin Xia, et al. (+6)
35 [GO] 2023―Sep―04 SARS-CoV-2 Nsp8 N-terminal domain folds autonomously and binds dsRNA Miguel Á Treviño, David Pantoja-Uceda, Douglas V Laurents, Miguel Mompeán
36 [GO] 2023―Aug―10 Observing inhibition of the SARS-CoV-2 helicase at single-nucleotide resolution Sinduja K Marx, Keith J Mickolajczyk, Jonathan M Craig, Christopher A Thomas, Akira M Pfeffer, Sarah J Abell, et al. (+8)
37 [GO] 2023―Jul―28 Correction to ‘COVID19db: a comprehensive database platform to discover potential drugs and targets of COVID-19 at whole transcriptomic scale’
38 [GO] 2023―Jul―28 SARS-CoV-2 NSP1 induces mRNA cleavages on the ribosome Yann Tardivat, Piotr Sosnowski, Antonin Tidu, Eric Westhof, Gilbert Eriani, Franck Martin
39 [GO] 2023―Jun―01 Nsp14 of SARS-CoV-2 inhibits mRNA processing and nuclear export by targeting the nuclear cap-binding complex Jun Katahira, Tatsuya Ohmae, Mayo Yasugi, Ryosuke Sasaki, Yumi Itoh, Tomoko Kohda, et al. (+4)
40 [GO] 2023―May―17 nCoVDock2: a docking server to predict the binding modes between COVID-19 targets and its potential ligands Kai Liu, Xufeng Lu, Hang Shi, Xiaojun Xu, Ren Kong, Shan Chang
41 [GO] 2023―Apr―28 Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease Andre Schutzer Godoy, Aline Minalli Nakamura, Alice Douangamath, Yun Song, Gabriela Dias Noske, Victor Oliveira Gawriljuk, et al. (+18)
42 [GO] 2023―Mar―17 A hybrid structure determination approach to investigate the druggability of the nucleocapsid protein of SARS-CoV-2 Giacomo Padroni, Maria Bikaki, Mihajlo Novakovic, Antje C Wolter, Simon H Rüdisser, Alvar D Gossert, et al. (+2)
43 [GO] 2022―Dec―22 Interfering with nucleotide excision by the coronavirus 3′-to-5′ exoribonuclease Rukesh Chinthapatla, Mohamad Sotoudegan, Pankaj Srivastava, Thomas K Anderson, Ibrahim M Moustafa, Kellan T Passow, et al. (+8)
44 [GO] 2022―Dec―20 Correction to ‘LitCovid in 2022: an information resource for the COVID-19 literature’
45 [GO] 2022―Dec―20 Cis-mediated interactions of the SARS-CoV-2 frameshift RNA alter its conformations and affect function Lukas Pekarek, Matthias M Zimmer, Anne-Sophie Gribling-Burrer, Stefan Buck, Redmond Smyth, Neva Caliskan
46 [GO] 2022―Dec―19 Structural domains of SARS-CoV-2 nucleocapsid protein coordinate to compact long nucleic acid substrates Michael Morse, Jana Sefcikova, Ioulia Rouzina, Penny J Beuning, Mark C Williams
47 [GO] 2022―Dec―13 Cellular APOBEC3A deaminase drives mutations in the SARS-CoV-2 genome Yoshihiro Nakata, Hirotaka Ode, Mai Kubota, Takaaki Kasahara, Kazuhiro Matsuoka, Atsuko Sugimoto, et al. (+3)
48 [GO] 2022―Dec―12 Crystal structures and fragment screening of SARS-CoV-2 NSP14 reveal details of exoribonuclease activation and mRNA capping and provide starting points for antiviral drug development Nergis Imprachim, Yuliana Yosaatmadja, Joseph A Newman
49 [GO] 2022―Nov―19 LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2 He Zhang, Sizhen Li, Liang Zhang, David H Mathews, Liang Huang
50 [GO] 2022―Oct―21 COMBATdb: a database for the COVID-19 Multi-Omics Blood ATlas Dapeng Wang, Vinod Kumar, Katie L Burnham, Alexander J Mentzer, Brian D Marsden, Julian C Knight
51 [GO] 2022―Oct―19 LitCovid in 2022: an information resource for the COVID-19 literature Qingyu Chen, Alexis Allot, Robert Leaman, Chih-Hsuan Wei, Elaheh Aghaarabi, John J Guerrerio, et al. (+2)
52 [GO] 2022―Sep―16 CovInter: interaction data between coronavirus RNAs and host proteins Kuerbannisha Amahong, Wei Zhang, Ying Zhou, Song Zhang, Jiayi Yin, Fengcheng Li, et al. (+9)
53 [GO] 2022―Jul―24 Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures Christine A Roden, Yifan Dai, Catherine A Giannetti, Ian Seim, Myungwoon Lee, Rachel Sealfon, et al. (+10)
54 [GO] 2022―Jul―18 Cap-independent translation and a precisely located RNA sequence enable SARS-CoV-2 to control host translation and escape anti-viral response Boris Slobodin, Urmila Sehrawat, Anastasia Lev, Daniel Hayat, Binyamin Zuckerman, Davide Fraticelli, et al. (+6)
55 [GO] 2022―Jul―08 Flipped over U: structural basis for dsRNA cleavage by the SARS-CoV-2 endoribonuclease Meredith N Frazier, Isha M Wilson, Juno M Krahn, Kevin John Butay, Lucas B Dillard, Mario J Borgnia, Robin E Stanley
56 [GO] 2022―Jun―17 Body temperature variation controls pre-mRNA processing and transcription of antiviral genes and SARS-CoV-2 replication Bruna Los, Marco Preußner, Kathrin Eschke, Ricardo Martin Vidal, Azza Abdelgawad, Didrik Olofsson, et al. (+6)
57 [GO] 2021―Nov―08 SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions Mariona Torrens-Fontanals, Alejandro Peralta-García, Carmine Talarico, Ramon Guixà-González, Toni Giorgino, Jana Selent
58 [GO] 2021―Jun―23 Correction to ‘Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy’ Anna Wacker, Julia E Weigand, Sabine R Akabayov, Nadide Altincekic, Jasleen Kaur Bains, Elnaz Banijamali, et al. (+57)
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58 Results       Page 1


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