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original article |
Date |
Title |
Authors All Authors |
1 |
[GO] |
2025―Feb―12 |
Correction to “Dissecting the Conformational Heterogeneity of Stem-Loop Substructures of the Fifth Element in the 5′-Untranslated Region of SARS-CoV-2” |
Klara R. Mertinkus, Andreas Oxenfarth, Christian Richter, Anna Wacker, Carlos P. Mata, Jose Maria Carazo, et al. (+2) Andreas Schlundt, Harald Schwalbe |
2 |
[GO] |
2025―Jan―02 |
Dual Inhibitors of SARS-CoV-2 3CL Protease and Human Cathepsin L Containing Glutamine Isosteres Are Anti-CoV-2 Agents |
Vivek Kumar, Jiyun Zhu, Bala C. Chenna, Zoe A. Hoffpauir, Andrew Rademacher, Ashley M. Rogers, et al. (+5) Chien-Te Tseng, Aleksandra Drelich, Sharfa Farzandh, Audrey L. Lamb, Thomas D. Meek |
3 |
[GO] |
2024―Dec―27 |
Polar Networks Mediate Ion Conduction of the SARS-CoV-2 Envelope Protein |
João Medeiros-Silva, Yanina Pankratova, Iva Sučec, Aurelio J. Dregni, Mei Hong |
4 |
[GO] |
2024―Nov―22 |
Covalent DNA-Encoded Library Workflow Drives Discovery of SARS-CoV-2 Nonstructural Protein Inhibitors |
Xudong Wang, Liwei Xiong, Ying Zhu, Sixiu Liu, Wenfeng Zhao, Xinyuan Wu, et al. (+17) Mengnisa Seydimemet, Linjie Li, Peiqi Ding, Xian Lin, Jiaxiang Liu, Xuan Wang, Zhiqiang Duan, Weiwei Lu, Yanrui Suo, Mengqing Cui, Jinfeng Yue, Rui Jin, Mingyue Zheng, Yechun Xu, Lianghe Mei, Hangchen Hu, Xiaojie Lu |
5 |
[GO] |
2024―Oct―23 |
Dissecting the Conformational Heterogeneity of Stem-Loop Substructures of the Fifth Element in the 5′-Untranslated Region of SARS-CoV-2 |
Klara R. Mertinkus, Andreas Oxenfarth, Christian Richter, Anna Wacker, Carlos P. Mata, Jose Maria Carazo, et al. (+2) Andreas Schlundt, Harald Schwalbe |
6 |
[GO] |
2024―Sep―26 |
Correction to “Net-Shaped DNA Nanostructures Designed for Rapid/Sensitive Detection and Potential Inhibition of the SARS-CoV-2 Virus” |
Neha Chauhan, Yanyu Xiong, Shaokang Ren, Abhisek Dwivedy, Nicholas Magazine, Lifeng Zhou, et al. (+7) Xiaohe Jin, Tianyi Zhang, Yogesh Saini, Brian T. Cunningham, Sherwood Yao, Weishan Huang, Xing Wang |
7 |
[GO] |
2024―Aug―22 |
Oligomeric State and Drug Binding of the SARS-CoV-2 Envelope Protein Are Sensitive to the Ectodomain |
Noah H. Somberg, Iva Sučec, João Medeiros-Silva, Hyunil Jo, Richard Beresis, Abdullah M. Syed, et al. (+2) Jennifer A. Doudna, Mei Hong |
8 |
[GO] |
2024―Jul―20 |
Fluorogenic Peptide Sensor Array Derived from Angiotensin-Converting Enzyme 2 Classifies Severe Acute Respiratory Syndrome Coronavirus 2 Variants of Concern |
Wei-Tao Dou, Pei-Hong Tong, Man Xing, Jiao-Jiao Liu, Xi-Le Hu, Tony D. James, et al. (+2) Dong-Ming Zhou, Xiao-Peng He |
9 |
[GO] |
2024―Feb―26 |
Polyvalent Nanobody Structure Designed for Boosting SARS-CoV-2 Inhibition |
Tingjie Song, Laura Cooper, Jazmin Galván Achi, Xiaojing Wang, Abhisek Dwivedy, Lijun Rong, Xing Wang |
10 |
[GO] |
2023―Dec―08 |
A Chemical Strategy for the Degradation of the Main Protease of SARS-CoV-2 in Cells |
Xiaohong Sang, Juan Wang, Jiao Zhou, Yan Xu, Jing An, Arieh Warshel, Ziwei Huang |
11 |
[GO] |
2023―Jul―21 |
NMR Characterization of the Papain-like Protease from SARS-CoV-2 Identifies the Conformational Heterogeneity in Its Inhibitor-Binding Site |
Yutaro Shiraishi, Ichio Shimada |
12 |
[GO] |
2023―Jun―09 |
Multiscale Simulations of the Covalent Inhibition of the SARS-CoV-2 Main Protease: Four Compounds and Three Reaction Mechanisms |
Bella L. Grigorenko, Igor V. Polyakov, Maria G. Khrenova, Goran Giudetti, Shirin Faraji, Anna I. Krylov, Alexander V. Nemukhin |
13 |
[GO] |
2022―Dec―15 |
Three on Three: Universal and High-Affinity Molecular Recognition of the Symmetric Homotrimeric Spike Protein of SARS-CoV-2 with a Symmetric Homotrimeric Aptamer |
Jiuxing Li, Zijie Zhang, Jimmy Gu, Ryan Amini, Alexandria G. Mansfield, Jianrun Xia, et al. (+15) Dawn White, Hannah D. Stacey, Jann C. Ang, Gurpreet Panesar, Alfredo Capretta, Carlos D. M. Filipe, Karen Mossman, Bruno J. Salena, Jonathan B. Gubbay, Cynthia Balion, Leyla Soleymani, Matthew S. Miller, Deborah Yamamura, John D. Brennan, Yingfu Li |
14 |
[GO] |
2022―Nov―11 |
Elucidating the Effect of Nanoscale Receptor-Binding Domain Organization on SARS-CoV-2 Infection and Immunity Activation with DNA Origami |
Jialu Zhang, Yunyun Xu, Mingying Chen, Yihao Huang, Ting Song, Chaoyong Yang, et al. (+2) Yang Yang, Yanling Song |
15 |
[GO] |
2022―Nov―10 |
Dual Inhibitors of Main Protease (MPro) and Cathepsin L as Potent Antivirals against SARS-CoV2 |
Santanu Mondal, Yongzhi Chen, Gordon J. Lockbaum, Sudeshna Sen, Sauradip Chaudhuri, Archie C. Reyes, et al. (+8) Jeong Min Lee, Arshia N. Kaur, Nadia Sultana, Michael D. Cameron, Scott A. Shaffer, Celia A. Schiffer, Katherine A. Fitzgerald, Paul R. Thompson |
16 |
[GO] |
2022―Sep―01 |
Photochemical Identification of Auxiliary Severe Acute Respiratory Syndrome Coronavirus 2 Host Entry Factors Using μMap |
Saori Suzuki, Jacob B. Geri, Steve D. Knutson, Harris Bell-Temin, Tomokazu Tamura, David F. Fernández, et al. (+6) Gabrielle H. Lovett, Nicholas A. Till, Brigitte L. Heller, Jinchao Guo, David W. C. MacMillan, Alexander Ploss |
17 |
[GO] |
2022―Jul―26 |
Net-Shaped DNA Nanostructures Designed for Rapid/Sensitive Detection and Potential Inhibition of the SARS-CoV-2 Virus |
Neha Chauhan, Yanyu Xiong, Shaokang Ren, Abhisek Dwivedy, Nicholas Magazine, Lifeng Zhou, et al. (+6) Xiaohe Jin, Tianyi Zhang, Brian T. Cunningham, Sherwood Yao, Weishan Huang, Xing Wang |
18 |
[GO] |
2022―Jul―25 |
A Single-Component Luminescent Biosensor for the SARS-CoV-2 Spike Protein |
Matthew Ravalin, Heegwang Roh, Rahul Suryawanshi, G. Renuka Kumar, John E. Pak, Melanie Ott, Alice Y. Ting |
19 |
[GO] |
2022―Jul―21 |
Electrochemical Detection of a Few Copies of Unamplified SARS-CoV-2 Nucleic Acids by a Self-Actuated Molecular System |
Daizong Ji, Mingquan Guo, Yungen Wu, Wentao Liu, Shi Luo, Xuejun Wang, et al. (+7) Hua Kang, Yiheng Chen, Changhao Dai, Derong Kong, Hongwenjie Ma, Yunqi Liu, Dacheng Wei |
20 |
[GO] |
2022―Jul―13 |
NMR Experiments Provide Insights into Ligand-Binding to the SARS-CoV-2 Spike Protein Receptor-Binding Domain |
Robert Creutznacher, Thorben Maass, Barbora Veselkova, George Ssebyatika, Thomas Krey, Martin Empting, et al. (+5) Norbert Tautz, Martin Frank, Knut Kölbel, Charlotte Uetrecht, Thomas Peters |
21 |
[GO] |
2022―Jun―30 |
Spatially Patterned Neutralizing Icosahedral DNA Nanocage for Efficient SARS-CoV-2 Blocking |
Jialu Zhang, Yunyun Xu, Yihao Huang, Miao Sun, Siwen Liu, Shuang Wan, et al. (+4) Honglin Chen, Chaoyong Yang, Yang Yang, Yanling Song |
22 |
[GO] |
2022―Jun―22 |
REVEALR-Based Genotyping of SARS-CoV-2 Variants of Concern in Clinical Samples |
Kefan Yang, Daniel N. Schuder, Arlene K. Ngor, John C. Chaput |
23 |
[GO] |
2022―Jun―08 |
Antibody-Invertase Fusion Protein Enables Quantitative Detection of SARS-CoV-2 Antibodies Using Widely Available Glucometers |
Elissa K. Leonard, Miguel Aller Pellitero, Boris Juelg, Jamie B. Spangler, Netzahualcóyotl Arroyo-Currás |
24 |
[GO] |
2022―May―31 |
Atomic-Resolution Structure of SARS-CoV-2 Nucleocapsid Protein N-Terminal Domain |
Sucharita Sarkar, Brent Runge, Ryan W. Russell, Kumar Tekwani Movellan, Daniel Calero, Somayeh Zeinalilathori, et al. (+5) Caitlin M. Quinn, Manman Lu, Guillermo Calero, Angela M. Gronenborn, Tatyana Polenova |
25 |
[GO] |
2022―May―17 |
Amyloidogenesis of SARS-CoV-2 Spike Protein |
Sofie Nyström, Per Hammarström |
26 |
[GO] |
2022―Apr―18 |
Fast and Effective Prediction of the Absolute Binding Free Energies of Covalent Inhibitors of SARS-CoV-2 Main Protease and 20S Proteasome |
Jiao Zhou, Arjun Saha, Ziwei Huang, Arieh Warshel |
27 |
[GO] |
2022―Apr―05 |
pH- and Calcium-Dependent Aromatic Network in the SARS-CoV-2 Envelope Protein |
João Medeiros-Silva, Noah H Somberg, Harrison K. Wang, Matthew J. McKay, Venkata S. Mandala, Aurelio J. Dregni, Mei Hong |
28 |
[GO] |
2022―Feb―28 |
An Engineered Cytidine Deaminase for Biocatalytic Production of a Key Intermediate of the Covid-19 Antiviral Molnupiravir |
Ashleigh J. Burke, William R. Birmingham, Ying Zhuo, Thomas W. Thorpe, Bruna Zucoloto da Costa, Rebecca Crawshaw, et al. (+9) Ian Rowles, James D. Finnigan, Carl Young, Gregory M. Holgate, Mark P. Muldowney, Simon J. Charnock, Sarah L. Lovelock, Nicholas J. Turner, Anthony P. Green |
29 |
[GO] |
2022―Feb―25 |
Covalently Engineered Protein Minibinders with Enhanced Neutralization Efficacy against Escaping SARS-CoV-2 Variants |
Yu Han, Zhenlin Yang, Hengrui Hu, Heng Zhang, Long Chen, Kexin Li, et al. (+6) Linghao Kong, Qianran Wang, Bo Liu, Manli Wang, Jian Lin, Peng R. Chen |
30 |
[GO] |
2022―Feb―15 |
Strikingly Different Roles of SARS-CoV-2 Fusion Peptides Uncovered by Neutron Scattering |
Andreas Santamaria, Krishna C. Batchu, Olga Matsarskaia, Sylvain F. Prévost, Daniela Russo, Francesca Natali, et al. (+10) Tilo Seydel, Ingo Hoffmann, Valérie Laux, Michael Haertlein, Tamim A. Darwish, Robert A. Russell, Giacomo Corucci, Giovanna Fragneto, Armando Maestro, Nathan R. Zaccai |
31 |
[GO] |
2022―Feb―10 |
Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses |
Andreas Luttens, Hjalmar Gullberg, Eldar Abdurakhmanov, Duy Duc Vo, Dario Akaberi, Vladimir O. Talibov, et al. (+20) Natalia Nekhotiaeva, Laura Vangeel, Steven De Jonghe, Dirk Jochmans, Janina Krambrich, Ali Tas, Bo Lundgren, Ylva Gravenfors, Alexander J. Craig, Yoseph Atilaw, Anja Sandström, Lindon W. K. Moodie, Åke Lundkvist, Martijn J. van Hemert, Johan Neyts, Johan Lennerstrand, Jan Kihlberg, Kristian Sandberg, U. Helena Danielson, Jens Carlsson |
32 |
[GO] |
2021―Dec―03 |
Discovery of Di- and Trihaloacetamides as Covalent SARS-CoV-2 Main Protease Inhibitors with High Target Specificity |
Chunlong Ma, Zilei Xia, Michael Dominic Sacco, Yanmei Hu, Julia Alma Townsend, Xiangzhi Meng, et al. (+10) Juliana Choza, Haozhou Tan, Janice Jang, Maura V. Gongora, Xiujun Zhang, Fushun Zhang, Yan Xiang, Michael Thomas Marty, Yu Chen, Jun Wang |
33 |
[GO] |
2021―Dec―02 |
Spherical Neutralizing Aptamer Inhibits SARS-CoV-2 Infection and Suppresses Mutational Escape |
Miao Sun, Siwen Liu, Ting Song, Fude Chen, Jialu Zhang, Jia-ao Huang, et al. (+6) Shuang Wan, Yao Lu, Honglin Chen, Weihong Tan, Yanling Song, Chaoyong Yang |
34 |
[GO] |
2021―Nov―29 |
Polymers Strive for Accuracy: From Sequence-Defined Polymers to mRNA Vaccines against COVID-19 and Polymers in Nucleic Acid Therapeutics |
Aman Ishaqat, Andreas Herrmann |
35 |
[GO] |
2021―Nov―10 |
Concordance of X-ray and AlphaFold2 Models of SARS-CoV-2 Main Protease with Residual Dipolar Couplings Measured in Solution |
Angus J. Robertson, Joseph M. Courtney, Yang Shen, Jinfa Ying, Ad Bax |
36 |
[GO] |
2021―Oct―21 |
Renal-Clearable Molecular Probe for Near-Infrared Fluorescence Imaging and Urinalysis of SARS-CoV-2 |
Si Si Liew, Ziling Zeng, Penghui Cheng, Shasha He, Chi Zhang, Kanyi Pu |
37 |
[GO] |
2021―Oct―17 |
Sweet Drugs for Bad Bugs: A Glycomimetic Strategy against the DC-SIGN-Mediated Dissemination of SARS-CoV-2 |
Jonathan Cramer, Adem Lakkaichi, Butrint Aliu, Roman P. Jakob, Sebastian Klein, Ivan Cattaneo, et al. (+8) Xiaohua Jiang, Said Rabbani, Oliver Schwardt, Gert Zimmer, Matias Ciancaglini, Tiago Abreu Mota, Timm Maier, Beat Ernst |
38 |
[GO] |
2021―Oct―16 |
Predicting Mutational Effects on Receptor Binding of the Spike Protein of SARS-CoV-2 Variants |
Chen Bai, Junlin Wang, Geng Chen, Honghui Zhang, Ke An, Peiyi Xu, et al. (+5) Yang Du, Richard D. Ye, Arjun Saha, Aoxuan Zhang, Arieh Warshel |
39 |
[GO] |
2021―Oct―15 |
Surface Glycan Modification of Cellular Nanosponges to Promote SARS-CoV-2 Inhibition |
Xiangzhao Ai, Dan Wang, Anna Honko, Yaou Duan, Igor Gavrish, Ronnie H. Fang, et al. (+3) Anthony Griffiths, Weiwei Gao, Liangfang Zhang |
40 |
[GO] |
2021―Oct―09 |
Direct SARS-CoV-2 Nucleic Acid Detection by Y-Shaped DNA Dual-Probe Transistor Assay |
Derong Kong, Xuejun Wang, Chenjian Gu, Mingquan Guo, Yao Wang, Zhaolin Ai, et al. (+11) Shen Zhang, Yiheng Chen, Wentao Liu, Yungen Wu, Changhao Dai, Qianying Guo, Di Qu, Zhaoqin Zhu, Youhua Xie, Yunqi Liu, Dacheng Wei |
41 |
[GO] |
2021―Sep―07 |
Trivalent Subunit Vaccine Candidates for COVID-19 and Their Delivery Devices |
Oscar A. Ortega-Rivera, Matthew D. Shin, Angela Chen, Veronique Beiss, Miguel A. Moreno-Gonzalez, Miguel A. Lopez-Ramirez, et al. (+6) Maria Reynoso, Hong Wang, Brett L. Hurst, Joseph Wang, Jonathan K. Pokorski, Nicole F. Steinmetz |
42 |
[GO] |
2021―Aug―16 |
Water-Triggered, Irreversible Conformational Change of SARS-CoV-2 Main Protease on Passing from the Solid State to Aqueous Solution |
Narjes Ansari, Valerio Rizzi, Paolo Carloni, Michele Parrinello |
43 |
[GO] |
2021―Aug―10 |
Fusion Peptide of SARS-CoV-2 Spike Rearranges into a Wedge Inserted in Bilayered Micelles |
Rama K. Koppisetti, Yan G. Fulcher, Steven R. Van Doren |
44 |
[GO] |
2021―Jul―30 |
Structural O-Glycoform Heterogeneity of the SARS-CoV-2 Spike Protein Receptor-Binding Domain Revealed by Top-Down Mass Spectrometry |
David S. Roberts, Morgan Mann, Jake A. Melby, Eli J. Larson, Yanlong Zhu, Allan R. Brasier, et al. (+2) Song Jin, Ying Ge |
45 |
[GO] |
2021―Jul―22 |
ACE2 Receptor-Modified Algae-Based Microrobot for Removal of SARS-CoV-2 in Wastewater |
Fangyu Zhang, Zhengxing Li, Lu Yin, Qiangzhe Zhang, Nelly Askarinam, Rodolfo Mundaca-Uribe, et al. (+5) Farshad Tehrani, Emil Karshalev, Weiwei Gao, Liangfang Zhang, Joseph Wang |
46 |
[GO] |
2021―Jul―20 |
To Knot or Not to Knot: Multiple Conformations of the SARS-CoV-2 Frameshifting RNA Element |
Tamar Schlick, Qiyao Zhu, Abhishek Dey, Swati Jain, Shuting Yan, Alain Laederach |
47 |
[GO] |
2021―Jul―16 |
Free Energy Landscapes from SARS-CoV-2 Spike Glycoprotein Simulations Suggest that RBD Opening Can Be Modulated via Interactions in an Allosteric Pocket |
Lucy Fallon, Kellon A. A. Belfon, Lauren Raguette, Yuzhang Wang, Darya Stepanenko, Abbigayle Cuomo, et al. (+6) Jose Guerra, Stephanie Budhan, Sarah Varghese, Christopher P. Corbo, Robert C. Rizzo, Carlos Simmerling |
48 |
[GO] |
2021―Jun―10 |
REVEALR: A Multicomponent XNAzyme-Based Nucleic Acid Detection System for SARS-CoV-2 |
Kefan Yang, John C. Chaput |
49 |
[GO] |
2021―Jun―04 |
A Trimeric Hydrophobic Zipper Mediates the Intramembrane Assembly of SARS-CoV-2 Spike |
Qingshan Fu, James J. Chou |
50 |
[GO] |
2021―May―27 |
Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations |
Sandro Bottaro, Giovanni Bussi, Kresten Lindorff-Larsen |
51 |
[GO] |
2021―May―21 |
NMR Based SARS-CoV-2 Antibody Screening |
Marta V. Schoenle, Yang Li, Meng Yuan, Michael W. Clarkson, Ian A. Wilson, Wolfgang Peti, Rebecca Page |
52 |
[GO] |
2021―Mar―30 |
3D Heteronuclear Magnetization Transfers for the Establishment of Secondary Structures in SARS-CoV-2-Derived RNAs |
Jihyun Kim, Mihajlo Novakovic, Sundaresan Jayanthi, Adonis Lupulescu, Eriks Kupce, J. Tassilo Grün, et al. (+7) Klara Mertinkus, Andreas Oxenfarth, Christian Richter, Robbin Schnieders, Julia Wirmer-Bartoschek, Harald Schwalbe, Lucio Frydman |
53 |
[GO] |
2021―Mar―03 |
Heterogeneity of Glycan Processing on Trimeric SARS-CoV-2 Spike Protein Revealed by Charge Detection Mass Spectrometry |
Lohra M. Miller, Lauren F. Barnes, Shannon A. Raab, Benjamin E. Draper, Tarick J. El-Baba, Corinne A. Lutomski, et al. (+3) Carol V. Robinson, David E. Clemmer, Martin F. Jarrold |
54 |
[GO] |
2021―Jan―23 |
Detection of SARS-CoV-2 Viral Particles Using Direct, Reagent-Free Electrochemical Sensing |
Hanie Yousefi, Alam Mahmud, Dingran Chang, Jagotamoy Das, Surath Gomis, Jenise B. Chen, et al. (+13) Hansen Wang, Terek Been, Lily Yip, Eric Coomes, Zhijie Li, Samira Mubareka, Allison McGeer, Natasha Christie, Scott Gray-Owen, Alan Cochrane, James M. Rini, Edward H. Sargent, Shana O. Kelley |
55 |
[GO] |
2020―Dec―15 |
Proton-Coupled Conformational Activation of SARS Coronavirus Main Proteases and Opportunity for Designing Small-Molecule Broad-Spectrum Targeted Covalent Inhibitors |
Neha Verma, Jack A. Henderson, Jana Shen |