| |
original article |
Date |
Title |
Authors Max. 6 Authors |
| 1 |
[GO] |
2024―Mar―19 |
Transmembrane conformation of the envelope protein of an alpha coronavirus, NL63 |
Iva Sučec, Yanina Pankratova, Mriganka Parasar, Mei Hong |
| 2 |
[GO] |
2024―Mar―19 |
Sensitive detection of SARS-CoV-2 main protease 3CLpro with an engineered ribonuclease zymogen |
Evans C. Wralstad, Ronald T. Raines |
| 3 |
[GO] |
2023―Dec―08 |
A naturally occurring G11S mutation in the 3C-like protease from the SARS-CoV-2 virus dramatically weakens the dimer interface |
Guanyu Wang, Felipe Venegas, Andres Rueda, Nuwani Weerasinghe, Kevin A. Uggowitzer, Christopher J. Thibodeaux, Nicolas Moitessier, Anthony K. Mittermaier |
| 4 |
[GO] |
2023―Nov―24 |
Molecular Interactions between Perlecan LG3 and the SARS-CoV-2 spike protein RBD |
Timothy E. Gressett, Md Lokman Hossen, Grant Talkington, Milla Volic, Hugo Perez, Purushottam B. Tiwari, Prem Chapagain, Gregory Bix |
| 5 |
[GO] |
2023―Oct―31 |
Nucleocapsid proteins from human coronaviruses possess phase separation capabilities and promote FUS pathological aggregation |
Hui Dong, Hong Zhang, Julie Jalin, Ziqi He, Runhan Wang, Leqi Huang, Zibo Liu, Shenqing Zhang, Bin Dai, Dan Li |
| 6 |
[GO] |
2023―Oct―14 |
Coronaviruses spike glycoprotein endodomains: The sequence and structure-based comprehensive study |
Prateek Kumar, Aparna Bhardwaj, Bodhidipra Mukherjee, Richa Joshi, Rajanish Giri |
| 7 |
[GO] |
2023―Sep―01 |
Biophysical Investigation of Interactions Between SARS-CoV-2 Spike Protein and Neuropilin-1 |
Decheng Hou, Wenpeng Cao, Seonghan Kim, Xinyu Cui, Matthew Ziarnik, Im Wonpil, X. Frank Zhang |
| 8 |
[GO] |
2023―Aug―26 |
Hexamethylene Amiloride Binds the SARS-CoV-2 Envelope Protein at the Protein-Lipid Interface |
Noah H. Somberg, João Medeiros-Silva, Hyunil Jo, Jun Wang, William F. DeGrado, Mei Hong |
| 9 |
[GO] |
2023―Jul―05 |
Soluble SARS-CoV-2 RBD and human ACE2 peptidase domain produced in DrosophilaS2 cells show functions evoking virus-cell interface |
Federico Carrión, Florencia Rammauro, Natalia Olivero-Deibe, Martín Fló, María Magdalena Portela, Analía Lima, Rosario Durán, Otto Pritsch, Sergio Bianchi |
| 10 |
[GO] |
2023―Jun―25 |
Large library docking for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors |
Elissa A. Fink, Conner Bardine, Stefan Gahbauer, Isha Singh, Tyler Detomasi, Kris White, Shuo Gu, Xiaobo Wan, Jun Chen, Beatrice Ary, Isabella Glenn, Joseph O'Connell, Henry O'Donnell, Pavla Fajtová, Jiankun Lyu, Seth Vigneron, Nicholas J. Young, Ivan S. Kondratov, Arghavan Alisoltani, Lacy M. Simons, Ramon Lorenzo-Redondo, Egon A. Ozer, Judd F. Hultquist, Anthony J. O'Donoghue, Yurii Moroz, Jack Taunton, Adam R. Renslo, John J. Irwin, Adolfo García-Sastre, Brian K. Shoichet, Charles S. Craik |
| 11 |
[GO] |
2023―Feb―21 |
Molecular insight into the specific interactions of the
SARS-CoV
-2 Nucleocapsid with
RNA
and host protein. |
Eunjeong Lee, Jasmina S. Redzic, Anthony J. Saviola, Xueni Li, Christopher C. Ebmeier, Tatiana Kutateladze, Kirk Charles Hansen, Rui Zhao, Natalie Ahn, Nikolai N. Sluchanko, Elan Eisenmesser |
| 12 |
[GO] |
2022―Oct―26 |
Evolutionary trajectory of receptor binding specificity and promiscuity of the spike protein of
SARS-CoV
-2 |
Cyril Planchais, Alejandra Reyes-Ruiz, Robin Lacombe, Alessandra Zarantonello, Maxime Lecerf, Margot Revel, Lubka T. Roumenina, Boris P. Atanasov, Hugo Mouquet, Jordan D. Dimitrov |
| 13 |
[GO] |
2022―Sep―26 |
Host and viral proteins involved in
SARS-CoV
-2 infection differentially bind heme |
Marie-T. Hopp, Dhruv C. Rathod, Diana Imhof |
| 14 |
[GO] |
2022―Aug―18 |
Contributions of the N-terminal intrinsically disordered region of the severe acute respiratory syndrome coronavirus 2 nucleocapsid protein to RNA-induced phase separation |
Milan Zachrdla, Adriana Savastano, Alain Ibáñez de Opakua, Maria-Sol Cima-Omori, Markus Zweckstetter |
| 15 |
[GO] |
2022―Aug―13 |
Crystal structure of
SARS-CoV
-2 nsp10-nsp16 in complex with small molecule inhibitors,
SS148
and
WZ16 |
Martin Klima, Aliakbar Khalili Yazdi, Fengling Li, Irene Chau, Taraneh Hajian, Albina Bolotokova, H. Ümit Kaniskan, Yulin Han, Ke Wang, Deyao Li, Minkui Luo, Jian Jin, Evzen Boura, Masoud Vedadi |
| 16 |
[GO] |
2022―Aug―11 |
Exploring the
pH
dependence of the
SARS-CoV
-2 complete fusion domain and the role of its unique structural features |
Daniel Birtles, Anna E. Oh, Jinwoo Lee |
| 17 |
[GO] |
2022―May―28 |
Engineering defensin α-helix to produce high-affinity
SARS-CoV
-2 spike protein binding ligands |
Leonardo Antônio Fernandes, Anderson Albino Gomes, Beatriz Gomes Guimarães, Maria de Lourdes Borba Magalhães, Partha Ray, Gustavo Felippe da Silva |
| 18 |
[GO] |
2022―Apr―11 |
Insect cell expression and purification of recombinant
SARS-COV
-2 spike proteins that demonstrate
ACE2
binding |
Lucas R. Struble, Audrey L. Smith, William E. Lutz, Gabrielle Grubbs, Satish Sagar, Kenneth W. Bayles, Prakash Radhakrishnan, Surender Khurana, Dalia El-Gamal, Gloria E. O. Borgstahl |
| 19 |
[GO] |
2021―Nov―15 |
PDBsum
extras:
SARS-CoV
-2 and
AlphaFold
models |
Roman A Laskowski, Janet M Thornton |
| 20 |
[GO] |
2021―Nov―04 |
CTD of SARS-CoV-2 N protein is a cryptic domain for binding ATP and nucleic acid that interplay in modulating phase separation |
Mei Dang, Jianxing Song |
| 21 |
[GO] |
2021―Nov―01 |
Structural basis for the interaction of SARS-CoV-2 virulence factor nsp1 with DNA Polymerase a - Primase |
Mairi L. Kilkenny, Charlotte E. Veale, Amir Guppy, Steven W. Hardwick, Dimitri Y. Chirgadze, Neil J. Rzechorzek, Joseph D. Maman, Luca Pellegrini |
| 22 |
[GO] |
2021―Oct―20 |
Protein Data Bank Japan: Celebrating our 20
th
anniversary during a global pandemic as the Asian hub of
3D
macromolecular structural data |
Gert-Jan Bekker, Masashi Yokochi, Hirofumi Suzuki, Yasuyo Ikegawa, Takeshi Iwata, Takahiro Kudo, Kei Yura, Toshimichi Fujiwara, Takeshi Kawabata, Genji Kurisu |
| 23 |
[GO] |
2021―Jul―01 |
CyDisCo production of functional recombinant SARS-CoV-2 spike receptor binding domain |
Janani Prahlad, Lucas R. Struble, William E. Lutz, Savanna A. Wallin, Surender Khurana, Andy Schnaubelt, Mara J. Broadhurst, Kenneth W. Bayles, Gloria E. O. Borgstahl |
| 24 |
[GO] |
2021―May―02 |
Predictable fold switching by the
SARS-CoV
-2 protein
ORF9b |
Lauren L. Porter |
| 25 |
[GO] |
2021―Apr―04 |
Characterization of the SARS-CoV-2 E Protein: Sequence, Structure, Viroporin and Inhibitors |
Yipeng Cao, Rui Yang, Imshik Lee, Wenwen Zhang, Jiana Sun, Wei Wang, Xiangfei Meng |
| 26 |
[GO] |
2021―Mar―31 |
Multiple Sites on
SARS-CoV
-2 Spike Protein are Susceptible to Proteolysis by Cathepsins B, K, L, S, and V |
Keval Bollavaram, Tiffanie H. Leeman, Maggie W. Lee, Akhil Kulkarni, Sophia G. Upshaw, Jiabei Yang, Hannah Song, Manu O. Platt |
| 27 |
[GO] |
2021―Feb―24 |
Crystallographic molecular replacement using an
in silico
-generated search model of
SARS-CoV
-2
ORF8 |
Thomas G. Flower, James H. Hurley |
| 28 |
[GO] |
2021―Feb―17 |
Nonstructural protein 7 and 8 complexes of
SARS-CoV
-2 |
Changhui Zhang, Li Li, Jun He, Cheng Chen, Dan Su |
| 29 |
[GO] |
2021―Feb―15 |
Neutralizing antibodies targeting the
SARS-CoV
-2 receptor binding domain isolated from a naïve human antibody library |
Benjamin N. Bell, Abigail E. Powell, Carlos Rodriguez, Jennifer R. Cochran, Peter S. Kim |
| 30 |
[GO] |
2020―Sep―27 |
Covid-19.bioreproducibility.org: A web resource for
SARS-CoV
-2-related structural models |
Dariusz Brzezinski, Marcin Kowiel, David R. Cooper, Marcin Cymborowski, Marek Grabowski, Alexander Wlodawer, Zbigniew Dauter, Ivan G. Shabalin, Miroslaw Gilski, Bernhard Rupp, Mariusz Jaskolski, Wladek Minor |
| 31 |
[GO] |
2020―Aug―21 |
Comparing the binding properties of peptides mimicking the Envelope protein of
SARS-CoV
and
SARS-CoV
-2 to the
PDZ
domain of the tight junction-associated
PALS1
protein |
Angelo Toto, Sana Ma, Francesca Malagrinò, Lorenzo Visconti, Livia Pagano, Kristian Stromgaard, Stefano Gianni |
| 32 |
[GO] |
2020―Jul―12 |
Architecture and self-assembly of the
SARS-CoV
-2 nucleocapsid protein |
Qiaozhen Ye, Alan M.V. West, Steve Silletti, Kevin D. Corbett |
| 33 |
[GO] |
2020―Apr―18 |
Crystal structure of Nsp15 endoribonuclease
NendoU
from
SARS-CoV
-2 |
Youngchang Kim, Robert Jedrzejczak, Natalia I. Maltseva, Mateusz Wilamowski, Michael Endres, Adam Godzik, Karolina Michalska, Andrzej Joachimiak |
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