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COVID answers in Scientific Journals all over the world


77 Results       Page 1

 [1] 
Elsevier: STAR Protocols
  original article Date Title Authors   All Authors
1 [GO] 2024―Apr―09 Protocol to longitudinally quantify SARS-CoV-2 RNA in wastewater using RT-qPCR and pepper mild mottle virus normalization Bryan Sanchez Jimenez, Trinity Sterling, Austin Brown, Brian Modica, Kaylee Gibson, Hannah Collins, et al. (+3)
2 [GO] 2024―Apr―06 Protocol to identify flavonoid antagonists of the SARS-CoV-2 main protease Moua Yang, Lin Lin, Robert Flaumenhaft
3 [GO] 2024―Feb―23 Chemical inactivation strategies for SARS-CoV-2-infected cells and organoids Marwah Karim, Amol Arunrao Pohane, Chieh-Wen Lo, Shirit Einav, Jaishree Garhyan
4 [GO] 2024―Jan―04 Protocol for training MERGE: A federated multi-input neural network for COVID-19 prognosis Bruno Casella, Walter Riviera, Marco Aldinucci, Gloria Menegaz
5 [GO] 2023―Sep―21 Protocol to detect infectious SARS-CoV-2 at low levels using in situ hybridization techniques Andréa Cottignies-Calamarte, Feifan He, Aiwei Zhu, Fernando Real, Morgane Bomsel
6 [GO] 2023―Sep―21 FluoroSpot assay to analyze SARS-CoV-2-specific T cell responses Camilla Tiezzi, Marzia Rossi, Andrea Vecchi, Sara Doselli, Amalia Penna, Paola Fisicaro, et al. (+7)
7 [GO] 2023―Jun―12 Protocol for studying co-infection between SARS-CoV-2 and Staphylococcus aureus in vitro Mariya I. Goncheva, David E. Heinrichs
8 [GO] 2023―May―15 Protocol to isolate temperature-sensitive SARS-CoV-2 mutants and identify associated mutations Shinya Okamura, Akiho Yoshida, Paola Miyazato, Mai Matsumoto, Hirotaka Ebina
9 [GO] 2023―May―05 Protocol for production and purification of SARS-CoV-2 3CLpro Luca Mazzei, Rebecca Greene-Cramer, Khushboo Bafna, Aleksandar Jovanovic, Anna De Falco, Thomas B. Acton, et al. (+3)
10 [GO] 2023―May―04 FlipGFP protease assay for evaluating in vitro inhibitory activity against SARS-CoV-2 Mpro and PLpro Haozhou Tan, Yanmei Hu, Jun Wang
11 [GO] 2023―Apr―27 Protocol for infecting and monitoring susceptible k18-hACE2 mice with SARS-CoV-2 Joana Couto, Rute Gonçalves, Sofia Lamas, Margarida Saraiva
12 [GO] 2023―Apr―24 Protocol for in vitro fluorescence assay of papain-like protease and cell-based immunofluorescence assay of coronavirus infection JuOae Chang, Jinhee Kim, Subin Hong, Kwiwan Jeong, Seungtaek Kim, Wonsik Lee
13 [GO] 2023―Mar―06 A cell-free platform to measure coronavirus membrane fusion Thomas Kicmal, Enya Qing, Grant M Hawkins, Alexandria Wilcox, Tom Gallagher
14 [GO] 2023―Feb―27 Immunization of MERS-CoV-2-infected mice with a sublethal dose of MERS-CoV or VRP-MERS-S Jian Zheng, Rudra Channapannavar, Stanley Perlman
15 [GO] 2023―Feb―10 Inhibition of SARS-CoV-2 Infection in Cellular Systems Using Engineered Trimeric Receptor Binding Domain of Spike Protein Angela Rose Liu, Shrikanth C. Basavarajappa, Nandini Sarkar, Anna Bruchez, Parameswaran Ramakrishnan
16 [GO] 2023―Feb―09 B-cell ELISpot assay to analyze human memory B cell and plasmablast responses specific to SARS-CoV-2 Receptor Binding Domain Angeline Rouers, Matthew Zirui Tay, Lisa FP. Ng, Laurent Renia
17 [GO] 2023―Jan―17 Protocol to evaluate the inflammatory response in human macrophages induced by SARS-CoV-2 spike-pseudotyped VLPs Maggie Jing Ouyang, Zhujun Ao, Titus A. Olukitibi, Xiao-Jian Yao
18 [GO] 2022―Dec―15 Protocol for investigating the biogenesis of SARS-CoV2-S pseudoviruses in HEK293T cells transduced to express the virus-specific intrabodies Surbhi Dahiya, Sudhakar Singh, Sharvan Sehrawat
19 [GO] 2022―Nov―16 Flow cytometric protocol to characterize human memory B cells directed against SARS-CoV-2 spike protein antigens Leonie M. Weskamm, Christine Dahlke, Marylyn M. Addo
20 [GO] 2022―Nov―07 Protocol for SARS-CoV-2 infection of kidney organoids derived from human pluripotent stem cells Elena Garreta, Daniel Moya-Rull, Megan L. Stanifer, Vanessa Monteil, Patricia Prado, Andrés Marco, et al. (+8)
21 [GO] 2022―Oct―28 Characterization of multiple interactions between the envelope E protein of SARS-CoV-2 and human BRD4 Mohamad Zandian, Suk Min Jang, Catherine Lachance, Arpan Acharya, Siddappa N. Byrareddy, Jacques Côté, Tatiana G. Kutateladze
22 [GO] 2022―Oct―24 Protocol to assess human germinal center responses to SARS-CoV-2 vaccination using a combined fine needle aspiration and spectral flow cytometry approach Emily Bettini, Katlyn Lederer, Hannah Sharpe, Mary Kaminski, Lisa Jones, Michela Locci
23 [GO] 2022―Oct―19 A high throughput SARS-CoV-2 pseudovirus multiplex neutralization assay Benjamin Louis Sievers, Terri Gelbart, Gene S. Tan
24 [GO] 2022―Oct―04 Protocol for characterizing the inhibition of SARS-CoV-2 infection by a protein of interest in cultured cells Xinyuan Lai, Hui Zhuang, Tong Li, Kuanhui Xiang
25 [GO] 2022―Oct―03 Protocol for high-throughput screening of SARS-CoV-2 main protease inhibitors using a robust fluorescence polarization assay Jing Zhang, Haohao Yan, Gangan Yan, Xiaoping Liu, Yanchang Wang, Yunyu Chen
26 [GO] 2022―Sep―26 Protocol to quantify and phenotype SARS-CoV-2 specific T-cell response using a rapid flow cytometry-based whole blood assay Hygon Mutavhatsindi, Catherine Riou
27 [GO] 2022―Sep―26 Monitoring fusion kinetics of viral and target cell membranes in living cells using a SARS-CoV-2 spike protein-mediated membrane fusion assay Hesham Nasser, Ryo Shimizu, Jumpei Ito, Akatsuki Saito, Kei Sato, Terumasa Ikeda
28 [GO] 2022―Aug―26 SARS-CoV-2 CD8+ T cell killing assays using replicating viruses and transgenic antigens Laura M. Mateyka, Vincent Grass, Andreas Pichlmair, Dirk H. Busch, Elvira D’Ippolito
29 [GO] 2022―Aug―04 Protocol for high throughput screening of ACE2 enzymatic activators to treat COVID-19 induced metabolic complications Pin Chen, Chenshu Liu, Zhongyu Zhang, Zilun Li, Sifan Chen, Yutong Lu
30 [GO] 2022―Aug―03 Protocol to identify host-viral protein interactions between coagulation-related proteins and their genetic variants with SARS-CoV-2 proteins David D. Holcomb, Katarzyna I. Jankowska, Nancy Hernandez, Kyle Laurie, Jacob Kames, Nobuko Hamasaki-Katagiri, et al. (+3)
31 [GO] 2022―Jul―21 Infecting kidney organoids with a cDNA reporter clone of SARS-CoV-2 Hyunjae Chung, Maxwell P. Bui-Marinos, Waleed Rahmani, Jennifer A. Corcoran, Justin Chun
32 [GO] 2022―Jul―19 Using human iPSC-derived kidney organoids to decipher SARS-CoV-2 pathology on single cell level Katharina C. Reimer, Jitske Jansen, Gijs J. Overheul, Pascal Miesen, Ronald P. van Rij, Sergio H. Triana, et al. (+3)
33 [GO] 2022―Jul―15 Transient Transfection and Purification of SARS-CoV-2 Spike Protein from Mammalian cells Victoria Stalls, Katarzyna Janowska, Priyamvada Acharya
34 [GO] 2022―Jun―13 Protocol to isolate and assess spike protein cleavage in SARS-CoV-2 variants obtained from clinical COVID-19 samples Alba Escalera, Adolfo García-Sastre, Teresa Aydillo
35 [GO] 2022―May―24 SPIKES: Identification of physicochemical properties of spike proteins across diverse host species of SARS-CoV-2 Srinivasulu Yerukala Sathipati, Ming-Ju Tsai, Tonia Carter, Sanjay K. Shukla, Shinn-Ying Ho
36 [GO] 2022―May―02 An antibody-based proximity labeling protocol to identify biotinylated interactors of SARS-CoV-2 Limin Shang, Yuehui Zhang, Yuchen Liu, Chaozhi Jin, Yanan Zhao, Jing Zhang, et al. (+2)
37 [GO] 2022―Apr―22 Real-time cell analysis: A high-throughput approach for testing SARS-CoV-2 antibody neutralization and escape Naveenchandra Suryadevara, Pavlo Gilchuk, Seth J. Zost, Nikhil Mittal, Li Leyna Zhao, James E. Crowe, Robert H. Carnahan
38 [GO] 2022―Apr―22 Protocols for SARS-CoV-2 infection in primary ocular cells and eye organoids Anne Zebitz Eriksen, Rasmus Møller, Bar Markovoz, Benjamin R. tenOever, Timothy A. Blenkinsop
39 [GO] 2022―Apr―21 Analyzing single cell transcriptome data from severe COVID-19 patients Nasna Nassir, Richa Tambi, Asma Bankapur, Noushad Karuvantevida, Hamdah Hassan Khansaheb, Binte Zehra, et al. (+14)
40 [GO] 2022―Mar―22 An economical and sensitive glassmilk-based nucleic-acid extraction approach for SARS-CoV-2 diagnostics Robert Page, Edward Scourfield, Mattia Ficarelli, Stuart McKellar, Kwok Leung Lee, Thomas J.A. Maguire, et al. (+7)
41 [GO] 2022―Mar―03 A computational protein design protocol for optimization of the SARS-CoV-2 receptor-binding-motif affinity for human ACE2 Savvas Polydorides, Georgios Archontis
42 [GO] 2022―Mar―02 Open access methods and protocols promote open science in a pandemic Emily Marcinkevicius, Matthew J. Pavlovich
43 [GO] 2022―Feb―28 SARS-CoV-2 proteome microarray for COVID-19 patient sera profiling Dan-yun Lai, He-wei Jiang, Yang Li, Hai-nan Zhang, Sheng-ce Tao
44 [GO] 2022―Feb―22 A cell-based system combined with flow cytometry to evaluate antibody responses against SARS-CoV-2 transmembrane proteins in patients with COVID-19 Sophie Martin, Gwénaële Jégou, Aurore Nicolas, Matthieu Le Gallo, Éric Chevet, Florence Godey, Tony Avril
45 [GO] 2022―Feb―02 Mass spectrometry and proteome analysis to identify SARS-CoV-2 protein from COVID-19 patient swab samples Arghya Banerjee, Medha Gayathri J Pai, Avinash Singh, Mehar Un Nissa, Sanjeeva Srivastava
46 [GO] 2022―Jan―24 Protocol for Structure Determination of SARS-CoV-2 Main Protease at Near-physiological-temperature by Serial Femtosecond Crystallography Fatma Betul Ertem, Omur Guven, Cengizhan Buyukdag, Oktay Gocenler, Esra Ayan, Busra Yuksel, et al. (+18)
47 [GO] 2022―Jan―20 Transcriptome profiling of PBMCs and formalin-fixed autoptic tissues from COVID-19 patients Marta Vuerich, Na Wang, Ahmadreza Kalbasi, Jonathon J. Graham, Maria Serena Longhi
48 [GO] 2021―Dec―08 Detection of N6-methyladenosine in SARS-CoV-2 RNA by methylated RNA immunoprecipitation sequencing (MeRIP-Seq) Na Li, Tariq Rana
49 [GO] 2021―Dec―03 Global metabolome profiling of COVID-19 respiratory specimen using High Resolution Mass Spectrometry (HRMS) Nupur Sharma, Sadam H. Bhat, Gaurav Tripathi, Manisha Yadav, Babu Mathew, Vasundhra Bindal, et al. (+4)
50 [GO] 2021―Nov―27 Protocol for global proteome, virome, and metaproteome profiling of respiratory specimen (VTM) in COVID-19 patient by LC-MS/MS-based analysis Gaurav Tripathi, Nupur Sharma, Vasundhra Bindal, Manisha Yadav, Babu Mathew, Shvetank Sharma, et al. (+3)
51 [GO] 2021―Nov―22 Detection of SARS-CoV-2 spike protein binding to ACE2 in living cells by TR-FRET Erika Cecon, Julie Dam, Ralf Jockers
52 [GO] 2021―Oct―12 Infecting human hematopoietic stem and progenitor cells with SARS-CoV-2 Hector Huerga Encabo, Rachel Ulferts, Aneesh Sharma, Rupert Beale, Dominique Bonnet
53 [GO] 2021―Oct―12 Domain-specific biochemical and serological characterization of SARS-CoV-2 nucleocapsid protein Chao Wu, Abraham J. Qavi, Austin B. Moyle, Nicole D. Wagner, Asmaa Hachim, Niloufar Kavian, et al. (+10)
54 [GO] 2021―Sep―27 UnCovid: A versatile, low-cost, and open-source protocol for SARS-CoV-2 RNA detection Roberto Alcántara, Katherin Peñaranda, Gabriel Mendoza-Rojas, Jose A. Nakamoto, Eva Dueñas, Daniela Alvarez, et al. (+2)
55 [GO] 2021―Sep―24 Computational workflow for functional characterization of COVID-19 through secondary data analysis Sudhir Ghandikota, Mihika Sharma, Anil G. Jegga
56 [GO] 2021―Sep―22 Identification of SARS-CoV-2 S RBD escape mutants using yeast screening and deep mutational scanning Cyrus M. Haas, Irene M. Francino-Urdaniz, Paul J. Steiner, Timothy A. Whitehead
57 [GO] 2021―Sep―13 A new flow cytometry assay to measure antibody dependent cellular cytotoxicity against SARS-CoV-2 Spike expressing cells Guillaume Beaudoin-Bussières, Jonathan Richard, Jérémie Prévost, Guillaume Goyette, Andrés Finzi
58 [GO] 2021―Aug―27 A tissue culture infectious dose (TCID)-derived protocol for testing of SARS-CoV-2 neutralization of serum antibodies on adherent cells Fabio Hasler, Agathe Duda, Thomas M. Kündig, Pål Johansen
59 [GO] 2021―Aug―27 Application of pseudotyped virus particles to monitor Ebola virus and SARS-CoV-2 viral entry in human cell lines Madeleine Eichler, Ebru Aksi, Josef Pfeilschifter, Gergely Imre
60 [GO] 2021―Aug―26 An antigen microarray protocol for COVID-19 serological analysis Joseph Longworth, Gunnar Dittmar
61 [GO] 2021―Aug―17 Fluorogenic in vitro activity assay for the main protease Mpro from SARS-CoV-2 and its adaptation to the identification of inhibitors. Ihssen Julian, Faccio Greta, Yao Chunyan, Sirec Teja, Spitz Urs
62 [GO] 2021―Aug―14 Optimization of antigen specific CD8+ T cell activation conditions for infectious diseases including COVID-19 Chanchan Xiao, Congling Qiu, Jieping Deng, Jiezhou Ye, Lijuan Gao, Jun Su, et al. (+3)
63 [GO] 2021―Aug―13 Luciferase reporter assays to monitor interferon signaling modulation by SARS-CoV-2 proteins Maximilian Hirschenberger, Manuel Hayn, Alexandre Laliberté, Lennart Koepke, Frank Kirchhoff, Konstantin Maria Johannes Sparrer
64 [GO] 2021―Aug―02 An optimized, amplicon-based approach for sequencing of SARS-CoV-2 from patient samples using COVIDSeq assay on Illumina MiSeq sequencing platforms Rahul C. Bhoyar, Vigneshwar Senthivel, Bani Jolly, Mohamed Imran, Abhinav Jain, Mohit Kumar Divakar, et al. (+2)
65 [GO] 2021―Jul―10 SARS-CoV-2 Spike linear epitope scanning via a peptide microarray through sera profiling Yang Li, Dan-yun Lai, Sheng-ce Tao
66 [GO] 2021―Jun―19 A flow cytometry-based assay for serological detection of anti-spike antibodies in COVID-19 patients Yun Shan Goh, Lisa F.P. Ng, Laurent Renia
67 [GO] 2021―Jun―18 Immunohistochemistry for protein detection in PFA-fixed paraffin-embedded SARS-CoV-2 infected COPD airway epithelium. Jaspreet Kaur Osan, Beth Ann DeMontigny, Masfique Mehedi
68 [GO] 2021―Jun―09 Protein purification and crystallization of HLA-A*02:01 in complex with SARS-CoV-2 peptides Demetra S.M. Chatzileontiadou, Christopher Szeto, Dhilshan Jayasinghe, Stephanie Gras
69 [GO] 2021―May―29 Protocol for constructing large size human antibody heavy chain variable domain (VH) library and selection of SARS-CoV-2 neutralizing antibody domains Chuan Chen, Zehua Sun, Xianglei Liu, Wei Li, Dimiter S. Dimitrov
70 [GO] 2021―May―12 Sample processing and single cell RNA-sequencing of peripheral blood immune cells from COVID-19 patients Changfu Yao, Stephanie A. Bora, Peter Chen, Helen S. Goodridge, Sina A. Gharib
71 [GO] 2021―May―10 A qualitative IgG ELISA for detection of SARS-CoV-2 specific antibodies in Syrian hamster serum samples Anita Shete, Sreelekshmy Mohandas, Rajlaxmi Jain, Pragya D. Yadav
72 [GO] 2021―Feb―05 Ex vivo assay to evaluate the efficacy of drugs targeting sphingolipids in preventing SARS-CoV-2 infection of nasal epithelial cells Katrin Anne Becker, Alexander Carpinteiro, Markus Hoffmann, Stefan Pöhlmann, Johannes Kornhuber, Erich Gulbins
73 [GO] 2021―Feb―05 Expression and Purification of Tag-Free SARS-CoV-2 RNA-Dependent RNA Polymerase in Escherichia coli Tyler L. Dangerfield, Nathan Z. Huang, Kenneth A. Johnson
74 [GO] 2020―Dec―17 Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19 Elena De Domenico, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Matthias Becker, Kristian Händler, Joachim L. Schultze
75 [GO] 2020―Dec―17 Glycomics-informed glycoproteomic analysis of site-specific glycosylation for SARS-CoV-2 spike protein Katelyn E. Rosenbalm, Michael Tiemeyer, Lance Wells, Kazuhiro Aoki, Peng Zhao
76 [GO] 2020―Nov―09 Sensitization of Non-permissive Laboratory Mice to SARS-CoV-2 with a Replication-Deficient Adenovirus Expressing Human ACE2 Lok-Yin Roy Wong, Kun Li, Jing Sun, Zhen Zhuang, Jincun Zhao, Paul B. McCray, Stanley Perlman
77 [GO] 2020―Sep―15 qRT-PCR Platforms for Diagnosing and Reporting SARS-CoV-2 Infection in Human Samples Richard M. Giadone, Aditya Mithal, Gregory J. Miller, Taylor M. Matte, Anthony K. Yeung, Todd W. Dowrey, et al. (+5)
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77 Results       Page 1


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