| |
original article |
Date |
Title |
Authors Max. 6 Authors |
| 1 |
[GO] |
2024―Sep―05 |
Comprehensive detection and dissection of interlineage recombination events in the SARS-CoV-2 pandemic |
Jia-Ying Li, Hao-Yang Wang, Ye-Xiao Cheng, Chengyang Ji, Shenghui Weng, Na Han, Rong Yang, Hang-Yu Zhou, Aiping Wu |
| 2 |
[GO] |
2024―Sep―02 |
Deep mutational scanning of SARS-CoV-2 Omicron BA.2.86 and epistatic emergence of the KP.3 variant |
Ashley L Taylor, Tyler N Starr |
| 3 |
[GO] |
2024―Sep―02 |
SARS-CoV-2 Variant Replacement Constrains Vaccine-Specific Viral Diversification |
Bethany L Dearlove, Anthony C Fries, Nusrat J Epsi, Stephanie A Richard, Anuradha Ganesan, Nikhil Huprikar, David A Lindholm, Katrin Mende, Rhonda E Colombo, Christopher Colombo, Hongjun Bai, Derek T Larson, Evan C Ewers, Tahaniyat Lalani, Alfred G Smith, Catherine M Berjohn, Ryan C Maves, Milissa U Jones, David Saunders, Carlos J Maldonado, Rupal M Mody, Samantha E Bazan, David R Tribble, Timothy Burgess, Mark P Simons, Brian K Agan, Simon D Pollett, Morgane Rolland |
| 4 |
[GO] |
2024―Aug―31 |
Intrahost evolution leading to distinct lineages in the upper and lower respiratory tracts during SARS-CoV-2 prolonged infection |
Majdouline El Moussaoui, Sebastien Bontems, Cecile Meex, Marie-Pierre Hayette, Marie Lejeune, Samuel L Hong, Simon Dellicour, Michel Moutschen, Nadine Cambisano, Nathalie Renotte, Vincent Bours, Gilles Darcis, Maria Artesi, Keith Durkin |
| 5 |
[GO] |
2024―Jul―30 |
Correction to: Cell type-specific adaptation of the SARS-CoV-2 spike |
|
| 6 |
[GO] |
2024―Jul―25 |
F1ALA: ultrafast and memory-efficient ancestral lineage annotation applied to the huge SARS-CoV-2 phylogeny |
Yongtao Ye, Marcus H Shum, Isaac Wu, Carlos Chau, Ningqi Zhao, David K Smith, Joseph T Wu, Tommy T Lam |
| 7 |
[GO] |
2024―May―14 |
Selection of viral variants with enhanced transmission and reduced neutralization susceptibility alongside lateral introductions may explain the persistence of porcine reproductive and respiratory syndrome virus in vaccinated breeding herds. |
Hepzibar Clilverd, Yanli Li, Gerard Martín-Valls, Laia Aguirre, Marga Martín, Martí Cortey, Enric Mateu |
| 8 |
[GO] |
2024―May―07 |
Emergence and dissemination of SARS-CoV-2 XBB.1.5 in New York |
Fabiana Gambaro, Ralf Duerr, Dacia Dimartino, Christian Marier, Eduardo Iturrate, Mark J Mulligan, Adriana Heguy, Simon Dellicour |
| 9 |
[GO] |
2024―Apr―25 |
Cell type-specific adaptation of the SARS-CoV-2 spike |
Marc Carrascosa-Sàez, María-Carmen Marqués, Ron Geller, Santiago F Elena, Amal Rahmeh, Jérémy Dufloo, Rafael Sanjuán |
| 10 |
[GO] |
2024―Apr―04 |
Correction to: Fitness effects of mutations to SARS-CoV-2 proteins |
|
| 11 |
[GO] |
2024―Mar―05 |
Evolutionary trajectory of diverse SARS-CoV-2 variants at the beginning of COVID-19 outbreak. |
Jia-Xin Lv, Xiang Liu, Yuan-Yuan Pei, Zhi-Gang Song, Xiao Chen, Shu-Jian Hu, Jia-Lei She, Yi Liu, Yan-Mei Chen, Yong-Zhen Zhang |
| 12 |
[GO] |
2024―Feb―21 |
Within-host evolution of SARS-CoV-2: how often are de novo mutations transmitted from symptomatic infections? |
Chapin S Korosec, Lindi M Wahl, Jane M Heffernan |
| 13 |
[GO] |
2024―Feb―09 |
Genomic Surveillance and Evolutionary Dynamics of Type-2 Porcine Reproductive and Respiratory Syndrome Virus in China Spanning the African Swine Fever Outbreak |
Zhiyong Wu, Tong Chang, Decheng Wang, Hongliang Zhang, Haizhou Liu, Xinyi Huang, Zhijun Tian, Xiaoxiao Tian, Di Liu, Tongqing An, Yi Yan |
| 14 |
[GO] |
2024―Jan―13 |
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method |
Adriano de Bernardi Schneider, Michelle Su, Angie S Hinrichs, Jade Wang, Helly Amin, John Bell, Debra A Wadford, Áine O’Toole, Emily Scher, Marc D Perry, Yatish Turakhia, Nicola De Maio, Scott Hughes, Russ Corbett-Detig |
| 15 |
[GO] |
2024―Jan―05 |
Genetic consequences of effective and suboptimal dosing with mutagenic drugs in a hamster model of SARS-CoV-2 infection |
Christopher J. R Illingworth, Jose A Guerra-Assuncao, Samuel Gregg, Oscar Charles, Juanita Pang, Sunando Roy, Rana Abdelnabi, Johan Neyts, Judith Breuer |
| 16 |
[GO] |
2023―Dec―29 |
What we can and cannot learn from SARS-CoV-2 and animals in metagenomic samples from the Huanan market |
Florence Débarre |
| 17 |
[GO] |
2023―Dec―29 |
SARS-CoV-2 infection in immunosuppression evolves sub-lineages which independently accumulate neutralization escape mutations |
Gila Lustig, Yashica Ganga, Hylton E Rodel, Houriiyah Tegally, Afrah Khairallah, Laurelle Jackson, Sandile Cele, Khadija Khan, Zesuliwe Jule, Kajal Reedoy, Farina Karim, Mallory Bernstein, Thumbi Ndung’u, Mahomed-Yunus S Moosa, Derseree Archary, Tulio de Oliveira, Richard Lessells, Richard A Neher, Salim S Abdool Karim, Alex Sigal |
| 18 |
[GO] |
2023―Dec―18 |
Tracing the adaptive evolution of SARS-CoV-2 during vaccine roll-out in Norway |
Ignacio Garcia, Yunsung Lee, Ola Brynildsrud, Vegard Eldholm, Per Magnus, Anita Blomfeldt, Truls M Leegaard, Fredrik Müller, Susanne Dudman, Dominique A Caugant |
| 19 |
[GO] |
2023―Sep―09 |
Fitness effects of mutations to SARS-CoV-2 proteins |
Jesse D Bloom, Richard A Neher |
| 20 |
[GO] |
2023―Aug―09 |
Association between SARS-CoV-2 and metagenomic content of samples from the Huanan Seafood Market |
Jesse D Bloom |
| 21 |
[GO] |
2023―Jun―29 |
Evolutionary changes in the number of dissociable amino acids on spike proteins and nucleoproteins of SARS-CoV-2 variants |
Anže Božič, Rudolf Podgornik |
| 22 |
[GO] |
2023―Mar―14 |
Natural selection differences detected in key protein domains between non-pathogenic and pathogenic Feline Coronavirus phenotypes |
Jordan D Zehr, Sergei L Kosakovsky Pond, Jean K Millet, Ximena A Olarte-Castillo, Alexander G Lucaci, Stephen D Shank, Kristina M Ceres, Annette Choi, Gary R Whittaker, Laura B Goodman, Michael J Stanhope |
| 23 |
[GO] |
2023―Jan―17 |
Emergence and pandemic spread of small ruminant lentiviruses. |
Maria-Luisa Carrozza, Anna-Maria Niewiadomska, Maurizio Mazzei, Mounir R Abi-Said, Stéphane Hué, Joseph Hughes, Anna Gatseva, Robert J Gifford |
| 24 |
[GO] |
2023―Jan―10 |
Evolutionary rate of SARS-CoV-2 increases during zoonotic infection of farmed mink |
Ashleigh F Porter, Damian F J Purcell, Benjamin P Howden, Sebastian Duchene |
| 25 |
[GO] |
2022―Dec―30 |
Correction to: The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK |
|
| 26 |
[GO] |
2022―Dec―16 |
Genomic epidemiology of SARS-CoV-2 in Cambodia, January 2020 to February 2021 |
Yvonne C F Su, Jordan Z J Ma, Tey Putita Ou, Leakhena Pum, Sidonn Krang, Philomena Raftery, Michael H Kinzer, Jennifer Bohl, Vanra Ieng, Vannda Kab, Sarika Patel, Borann Sar, Wong Foong Ying, Jayanthi Jayakumar, Viseth Srey Horm, Narjis Boukli, Sokhoun Yann, Cecile Troupin, Vireak Heang, Jose A Garcia-Rivera, Yi Sengdoeurn, Seng Heng, Sreyngim Lay, Sophana Chea, Chau Darapheak, Chin Savuth, Asheena Khalakdina, Sowath Ly, Laurence Baril, Jessica E Manning, Etienne Simone-Loriere, Veasna Duong, Philippe Dussart, Ly Sovann, Gavin J D Smith, Erik A Karlsson |
| 27 |
[GO] |
2022―Dec―05 |
Contributions of adaptation and purifying selection to SARS-CoV-2 evolution |
Richard A Neher |
| 28 |
[GO] |
2022―Dec―02 |
Genome evolution and early introductions of the SARS-CoV-2 Omicron Variant in Mexico |
Hugo G Castelán-Sánchez, León P Martínez-Castilla, Gustavo Sganzerla-Martínez, Jesús Torres-Flores, Gamaliel López-Leal |
| 29 |
[GO] |
2022―Nov―29 |
SARS-CoV-2 Intra-Host Single-Nucleotide Variants associated with disease severity |
Yi Zhang, Ning Jiang, Weiqiang Qi, Tao Li, Yumeng Zhang, Jing Wu, Haocheng Zhang, Mingzhe Zhou, Peng Cui, Tong Yu, Zhangfan Fu, Yang Zhou, Ke Lin, Hongyu Wang, Tongqing Wei, Zhaoqin Zhu, Jingwen Ai, Chao Qiu, Wenhong Zhang |
| 30 |
[GO] |
2022―Nov―05 |
Evolution of a globally unique SARS-CoV-2 Spike E484T monoclonal antibody escape mutation in a persistently infected, immunocompromised individual |
Peter J Halfmann, Nicholas R Minor, Luis A Haddock III, Robert Maddox, Gage K Moreno, Katarina M Braun, David A Baker, Kasen K Riemersa, Ankur Prasad, Kirsten J Alman, Matthew C Lambert, Kelsey Florek, Allen Bateman, Ryan Westergaard, Nasia Safdar, David R Andes, Yoshihiro Kawaoka, Madiha Fida, Joseph D Yao, Thomas C Friedrich, David H O’Connor |
| 31 |
[GO] |
2022―Sep―30 |
Rapid evolution of SARS-CoV-2 in domestic cats |
Laura Bashor, Roderick B Gagne, Angela Bosco-Lauth, Mark Stenglein, Sue VandeWoude |
| 32 |
[GO] |
2022―Sep―22 |
Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron |
Christiaan van Dorp, Emma Goldberg, Ruian Ke, Nick Hengartner, Ethan Romero-Severson |
| 33 |
[GO] |
2022―Aug―26 |
The Origins and Molecular Evolution of SARS-CoV-2 Lineage B.1.1.7 in the UK |
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alesandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Ben Jackson, J T McCrone, Áine O’Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver G Pybus, Andrew Rambaut |
| 34 |
[GO] |
2022―Aug―20 |
Lineage BA.2 Dominated the Omicron SARS-CoV-2 Epidemic Wave in the Philippines |
Yao-Tsun Li, Francisco Gerardo M Polotan, Gerald Ivan S Sotelo, Anne Pauline A Alpino, Ardiane Ysabelle M Dolor, Ma Angelica A Tujan, Ma Ricci R Gomez, Othoniel Jan T Onza, Angela Kae T Chang, Criselda T Bautista, June C Carandang, Maria Sofia L Yangzon, Elcid Aaron R Pangilinan, Renato Jancito Q Mantaring, Alyssa Joyce E Telles, John Michael C Egana, Joshua Jose S Endozo, Rianna Patricia S Cruz, Francis A Tablizo, Jan Michael C Yap, Benedict A Maralit, Marc Edsel C Ayes, Eva Marie C de la Paz, Cynthia P Saloma, Dodge R Lim, Lei Lanna M Dancel, Mayan Uy-Lumandas, Inez Andrea P Medado, Timothy John R Dizon, Katie Hampson, Simon Daldry, Joseph Hughes, Kirstyn Brunker |
| 35 |
[GO] |
2022―Aug―11 |
Recurrent SARS-CoV-2 mutations in immunodeficient patients |
S A J Wilkinson, Alex Richter, Anna Casey, Husam Osman, Jeremy D Mirza, Joanne Stockton, Josh Quick, Liz Ratcliffe, Natalie Sparks, Nicola Cumley, Radoslaw Poplawski, Samuel N Nicholls, Beatrix Kele, Kathryn Harris, Thomas P Peacock, Nicholas J Loman |
| 36 |
[GO] |
2022―Aug―06 |
covSampler: A Subsampling Method with Balanced Genetic Diversity for Large-Scale SARS-CoV-2 Genome Data Sets |
Yexiao Cheng, Chengyang Ji, Na Han, Jiaying Li, Lin Xu, Ziyi Chen, Rong Yang, Hang-Yu Zhou, Aiping Wu |
| 37 |
[GO] |
2022―Jul―27 |
A Single Early Introduction Governed Viral Diversity in the Second Wave of SARS-CoV-2 Epidemic in Hungary |
Eszter Ari, Bálint Márk Vásárhelyi, Gábor Kemenesi, Gábor Endre Tóth, Brigitta Zana, Balázs Somogyi, Zsófia Lanszki, Gergely Röst, Ferenc Jakab, Balázs Papp, Bálint Kintses |
| 38 |
[GO] |
2022―Jul―27 |
Tracking the Turnover of SARS-CoV-2 VOCs Gamma to Delta in a Brazilian State (Minas Gerais) with a High-Vaccination Status |
Paula L C Fonseca, Filipe R R Moreira, Rafael M de Souza, Natália R Guimarães, Nara O Carvalho, Talita E R Adelino, Hugo J Alves, Luige B Alvim, Darlan S Candido, Helena P Coelho, Alana V B Costa, Walyson C Costa, Alex F de Carvalho, Bruna W F de Faria, Aline B de Lima, Eneida S de Oliveira, Carolina S A de Souza, Fernanda G de Souza, Rillery C Dias, Victor E V Geddes, Igor P Godinho, Alessandro L Gonçalves, Karine L Lourenço, Rubens D M Magalhães, Frederico S V Malta, Eva L A Medeiros, Fernanda S Mendes, Pedro H B de P Mendes, Cristiane P T B Mendonça, Andre L Menezes, Diego Menezes, Mariane T Menezes, Lucyene Miguita, Rennan G Moreira, Renata B Peixoto, Daniel C Queiroz, Adriana A Ribeiro, Ana Paula de B Ribeiro, Juliana W Saliba, Hugo I Sato, Joice do P Silva, Natiely P Silva, Nuno R Faria, Santuza M R Teixeira, Flávio G da Fonseca, Ana Paula S M Fernandes, Danielle A G Zauli, José Nélio Januario, Jaqueline S de Oliveira, Felipe C de M Iani, Renato S de Aguiar, Renan P de Souza |
| 39 |
[GO] |
2022―Jul―22 |
Evolution of ACE2-Independent SARS-CoV-2 Infection and Mouse Adaption After Passage in Cells Expressing Human and Mouse ACE2 |
Kexin Yan, Troy Dumenil, Bing Tang, Thuy T Le, Cameron R Bishop, Andreas Suhrbier, Daniel J Rawle |
| 40 |
[GO] |
2022―Jun―21 |
Identification of Coronaviruses in Farmed Wild Animals Reveals their Evolutionary Origins in Guangdong, Southern China |
Xiaohu Wang, Zhaowen Ren, Lu Wang, Jing Chen, Pian Zhang, Jin-Ping Chen, Xiaofan Chen, Linmiao Li, Xuhui Lin, Nanshan Qi, Shengjun Luo, Rong Xiang, Ziguo Yuan, Jianfeng Zhang, Gang Wang, Min-Hua Sun, Yuan Huang, Yan Hua, Jiejian Zou, Fanghui Hou, Zhong Huang, Shouwen Du, Hua Xiang, Minfei Sun, Quan Liu, Ming Liao |
| 41 |
[GO] |
2022―Jun―16 |
Narrow Transmission Bottlenecks and Limited Within-Host Viral Diversity During a SARS-CoV-2 Outbreak on a Fishing Boat |
William W Hannon, Pavitra Roychoudhury, Hong Xie, Lasata Shrestha, Amin Addetia, Keith R Jerome, Alexander L Greninger, Jesse D Bloom |
| 42 |
[GO] |
2022―Jun―16 |
Identifying SARS-CoV-2 Regional Introductions and Transmission Clusters in Real Time |
Jakob McBroome, Jennifer Martin, Adriano de Bernardi Schneider, Yatish Turakhia, Russell Corbett-Detig |
| 43 |
[GO] |
2022―Jun―14 |
Conserved Recombination Patterns Across Coronavirus Subgenera |
Arné de Klerk, Phillip Swanepoel, Rentia Lourens, Mpumelelo Zondo, Isaac Abodunran, Spyros Lytras, Oscar A MacLean, David Robertson, Sergei L Kosakovsky Pond, Jordan D Zehr, Venkatesh Kumar, Michael J Stanhope, Gordon Harkins, Ben Murrell, Darren P Martin |
| 44 |
[GO] |
2022―Jun―04 |
Coronaviruses in Wild Animals Sampled in and Around Wuhan in the Beginning of COVID-19 Emergence |
Wen Wang, Jun-Hua Tian, Xiao Chen, Rui-Xue Hu, Xian-Dan Lin, Yuan-Yuan Pei, Jia-Xin Lv, Jiao-Jiao Zheng, Fa-Hui Dai, Zhi-Gang Song, Yan-Mei Chen, Yong-Zhen Zhang |
| 45 |
[GO] |
2022―May―21 |
Competition for Dominance Within Replicating Quasispecies During Prolonged SARS-CoV-2 Infection in an Immunocompromised Host |
Francesca Caccuri, Serena Messali, Daria Bortolotti, Dario Di Silvestre, Antonella De Palma, Chiara Cattaneo, Anna Bertelli, Alberto Zani, Maria Milanesi, Marta Giovanetti, Giovanni Campisi, Valentina Gentili, Antonella Bugatti, Federica Filippini, Erika Scaltriti, Stefano Pongolini, Alessandra Tucci, Simona Fiorentini, Pasqualina d’Ursi, Massimo Ciccozzi, Pierluigi Mauri, Roberta Rizzo, Arnaldo Caruso |
| 46 |
[GO] |
2022―May―18 |
Comparative Phylodynamics Reveals the Evolutionary History of SARS-CoV-2 Emerging Variants in the Arabian Peninsula |
Moh A Alkhamis, Nicholas M Fountain-Jones, Mohammad M Khajah, Mohammad Alghounaim, Salman K Al-Sabah |
| 47 |
[GO] |
2022―Apr―07 |
Molecular-Epidemiological Features of SARS-CoV-2 in Japan, 2020-2021 |
Hirotaka Ode, Yoshihiro Nakata, Mami Nagashima, Masaki Hayashi, Takako Yamazaki, Hiroyuki Asakura, Jun Suzuki, Mai Kubota, Kazuhiro Matsuoka, Masakazu Matsuda, Mikiko Mori, Atsuko Sugimoto, Mayumi Imahashi, Yoshiyuki Yokomaku, Kenji Sadamasu, Yasumasa Iwatani |
| 48 |
[GO] |
2022―Apr―07 |
Genomic Characterisation Reveals a Dominant Lineage of SARS-CoV-2 in Papua New Guinea |
Theresa Palou, Mathilda Wilmot, Sebastian Duchene, Ashleigh Porter, Ms Janlyn Kemoi, Dagwin Suarkia, Patiyan Andersson, Anne Watt, Norelle Sherry, Torsten Seemann, Michelle Sait, Charlie Turharus, Son Nguyen, Sanmarié Schlebusch, Craig Thompson, Jamie McMahon, Stefanie Vaccher, Chantel Lin, Esorom Daoni, Benjamin P Howden, Melinda Susapu |
| 49 |
[GO] |
2022―Mar―22 |
Large-Scale Analysis of SARS-CoV-2 Synonymous Mutations Reveals the Adaptation to the Human Codon Usage During the Virus Evolution |
Daniele Ramazzotti, Fabrizio Angaroni, Davide Maspero, Mario Mauri, Deborah D’Aliberti, Diletta Fontana, Marco Antoniotti, Elena Maria Elli, Alex Graudenzi, Rocco Piazza |
| 50 |
[GO] |
2022―Mar―18 |
The Early SARS-CoV-2 Epidemic in Senegal was Driven by the Local Emergence of B.1.416 and the Introduction of B.1.1.420 from Europe |
Lester J Perez, Gregory S Orf, Michael G Berg, Mary A Rodgers, Todd V Meyer, Aurash Mohaimani, Ana Olivo, Barbara Harris, Illya Mowerman, Abdou Padane, Agbogbenkou Tevi Dela-del Lawson, Aminata Mboup, Moustapha Mbow, Nafissatou Leye, Ndeye Coumba Touré-Kane, Ambroise D Ahouidi, Gavin A Cloherty, Souleymane Mboup |
| 51 |
[GO] |
2022―Mar―17 |
Replacement of the Gamma by the Delta variant in Brazil: impact of lineage displacement on the ongoing pandemic |
Marta Giovanetti, Vagner Fonseca, Eduan Wilkinson, Houriiyah Tegally, Emmanuel James San, Christian L Althaus, Joilson Xavier, Svetoslav Nanev Slavov, Vincent Louis Viala, Alex Ranieri Jerônimo Lima, Gabriela Ribeiro, Jayme A Souza-Neto, Heidge Fukumasu, Luiz Lehmann Coutinho, Rivaldo Venancio da Cunha, Carla Freitas, Carlos F Campelo de A e Melo, Wildo Navegantes de Araújo, Rodrigo Fabiano do Carmo Said, Maria Almiron, Tulio de Oliveira, Sandra Coccuzzo Sampaio, Maria Carolina Elias, Dimas Tadeu Covas, Edward C Holmes, José Lourenço, Simone Kashima, Luiz Carlos Junior de Alcantara |
| 52 |
[GO] |
2022―Mar―17 |
Tracking SARS-CoV-2 Mutations & Variants Through the COG-UK-Mutation Explorer |
Derek W Wright, William T Harvey, Joseph Hughes, MacGregor Cox, Thomas P Peacock, Rachel Colquhoun, Ben Jackson, Richard Orton, Morten Nielsen, Nienyun Sharon Hsu, Ewan M Harrison, Thushan I de Silva, Andrew Rambaut, Sharon J Peacock, David L Robertson, Alessandro M Carabelli |
| 53 |
[GO] |
2022―Mar―14 |
An Antibody-Escape Estimator for Mutations to the SARS-CoV-2 Receptor-Binding Domain |
Allison J Greaney, Tyler N Starr, Jesse D Bloom |
| 54 |
[GO] |
2022―Mar―05 |
The Rise and Spread of the SARS-CoV-2 AY.122 Lineage in Russia |
Galya V Klink, Ksenia R Safina, Elena Nabieva, Nikita Shvyrev, Sofya Garushyants, Evgeniia Alekseeva, Andrey B Komissarov, Daria M Danilenko, Andrei A Pochtovyi, Elizaveta V Divisenko, Lyudmila A Vasilchenko, Elena V Shidlovskaya, Nadezhda A Kuznetsova, Anna S Speranskaya, Andrei E Samoilov, Alexey D Neverov, Anfisa V Popova, Gennady G Fedonin, Vasiliy G Akimkin, Dmitry Lioznov, Vladimir A Gushchin, Vladimir Shchur, Georgii A Bazykin |
| 55 |
[GO] |
2022―Feb―15 |
Unrecognized Introductions of SARS-CoV-2 into the U.S. State of Georgia Shaped the Early Epidemic |
Ahmed Babiker, Michael A Martin, Charles Marvil, Stephanie Bellman, Robert A Petit III, Heath L Bradley, Victoria D Stittleburg, Jessica Ingersoll, Colleen S Kraft, Yan Li, Jing Zhang, Clinton R Paden, Timothy D Read, Jesse J Waggoner, Katia Koelle, Anne Piantadosi |
| 56 |
[GO] |
2022―Feb―14 |
Emergence and Spread of a Sub-Lineage of SARS-CoV-2 Alpha variant B.1.1.7 in Europe, and with Further Evolution of Spike Mutation Accumulations Shared with the Beta and Gamma Variants |
Marlena Stadtmüller, Alexa Laubner, Fabian Rost, Sylke Winkler, Eva Patrasová, Lenka Šimůnková, Susanne Reinhardt, Johanna Beil, Alexander H Dalpke, Buqing Yi |
| 57 |
[GO] |
2021―Dec―31 |
Sequencing SARS-CoV-2 Genomes from Saliva |
Tara Alpert, Chantal B F Vogels, Mallery I Breban, Mary E Petrone, Anne L Wyllie, Nathan D Grubaugh, Joseph R Fauver |
| 58 |
[GO] |
2021―Dec―11 |
A Comprehensive Evolutionary and Epidemiological Characterization of Insertion and Deletion Mutations in SARS-CoV-2 Genomes |
Xue Liu, Liping Guo, Tiefeng Xu, Xiaoyu Lu, Mingpeng Ma, Wenyu Sheng, Yinxia Wu, Hong Peng, Liu Cao, Fuxiang Zheng, Siyao Huang, Zixiao Yang, Jie Du, Mang Shi, Deyin Guo |
| 59 |
[GO] |
2021―Sep―30 |
Epidemiological Dynamics of SARS-CoV-2 VOC Gamma in Rio de Janeiro, Brazil |
Filipe Romero Rebello Moreira, Mirela D’arc, Diana Mariani, Alice Laschuk Herlinger, Francine Bittencourt Schiffler, Átila Duque Rossi, Isabela de Carvalho Leitão, Thamiris dos Santos Miranda, Matheus Augusto Calvano Cosentino, Marcelo Calado de Paula Tôrres, Raíssa Mirella dos Santos Cunha Da Costa, Cássia Cristina Alves Gonçalves, Débora Souza Faffe, Rafael Mello Galliez, Orlando da Costa Ferreira Junior, Renato Santana Aguiar, André Felipe Andrade dos Santos, Carolina Moreira Voloch, Terezinha Marta Pereira Pinto Castiñeiras, Amilcar Tanuri |
| 60 |
[GO] |
2021―Sep―22 |
The Impact of Global Lineage Dynamics, Border Restrictions and Emergence of the B.1.1.7 Lineage on the SARS-CoV-2 Epidemic in Norway |
Magnus N Osnes, Kristian Alfsnes, Jon Bråte, Ignacio Garcia Llorente, Rasmus K Riis, Kamilla H Instefjord, Hilde Elshaug, Hilde S Vollan, Line Victoria Moen, Benedikte Nevjen Pedersen, Dominique A Caugant, Kathrine Stene-Johansen, Olav Hungnes, Karoline Bragstad, Ola Brynildsrud, Vegard Eldholm |
| 61 |
[GO] |
2021―Aug―08 |
Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses |
Matthew Cotten, David L Robertson, My V T Phan |
| 62 |
[GO] |
2021―Jul―05 |
Assignment of Epidemiological Lineages in an Emerging Pandemic Using the Pangolin Tool |
Áine O’Toole, Emily Scher, Anthony Underwood, Ben Jackson, Verity Hill, John T McCrone, Rachel Colquhoun, Chris Ruis, Khalil Abu-Dahab, Ben Taylor, Corin Yeats, Louis Du Plessis, Daniel Maloney, Nathan Medd, Stephen W Attwood, David M Aanensen, Edward C Holmes, Oliver G Pybus, Andrew Rambaut |
| 63 |
[GO] |
2021―Jun―23 |
Adaptation of the Endemic Coronaviruses HCoV-OC43 and HCoV-229E to the Human Host |
Diego Forni, Rachele Cagliani, Federica Arrigoni, Martino Benvenuti, Alessandra Mozzi, Uberto Pozzoli, Mario Clerici, Luca De Gioia, Manuela Sironi |
| 64 |
[GO] |
2021―Jun―15 |
Recombinant SARS-CoV-2 Genomes Circulated at Low Levels Over The First Year of The Pandemic |
David VanInsberghe, Andrew S Neish, Anice C Lowen, Katia Koelle |
| 65 |
[GO] |
2021―Jun―08 |
Phylodynamics Reveals the Role of Human Travel and Contact Tracing in Controlling the First Wave of COVID-19 in Four Island Nations |
Jordan Douglas, Fábio K Mendes, Remco Bouckaert, Dong Xie, Cinthy L Jiménez-Silva, Christiaan Swanepoel, Joep de Ligt, Xiaoyun Ren, Matt Storey, James Hadfield, Colin R Simpson, Jemma L Geoghegan, Alexei J Drummond, David Welch |
| 66 |
[GO] |
2021―Jun―05 |
Coordinating SARS-CoV-2 Genomic Surveillance in the United States |
Martha I Nelson, Peter Thielen |
| 67 |
[GO] |
2021―Jun―03 |
Genomic Epidemiology of SARS-CoV-2 Transmission Lineages in Ecuador |
Bernardo Gutierrez, Sully Márquez, Belén Prado-Vivar, Mónica Becerra-Wong, Juan José Guadalupe, Darlan da Silva Candido, Juan Carlos Fernandez-Cadena, Gabriel Morey-Leon, Rubén Armas-Gonzalez, Derly Madeleiny Andrade-Molina, Alfredo Bruno, Domenica de Mora, Maritza Olmedo, Denisse Portugal, Manuel Gonzalez, Alberto Orlando, Jan Felix Drexler, Andres Moreira-Soto, Anna-Lena Sander, Sebastian Brünink, Arne Kühne, Leandro Patiño, Andrés Carrazco-Montalvo, Orson Mestanza, Jeannete Zurita, Gabriela Sevillano, Louis du Plessis, John T McCrone, Josefina Coloma, Gabriel Trueba, Verónica Barragán, Patricio Rojas-Silva, Michelle Grunauer, Moritz U G Kraemer, Nuno R Faria, Marina Escalera-Zamudio, Oliver G Pybus, Paúl Cárdenas |
| 68 |
[GO] |
2021―May―28 |
Slippery When wet: Cross-Species Transmission of Divergent Coronaviruses in Bony and Jawless Fish and The Evolutionary History of the Coronaviridae |
Allison K Miller, Jonathon C O Mifsud, Vincenzo A Costa, Rebecca M Grimwood, Jane Kitson, Cindy Baker, Cara L Brosnahan, Anjali Pande, Edward C Holmes, Neil J Gemmell, Jemma L Geoghegan |
| 69 |
[GO] |
2021―Feb―15 |
Unification and extensive diversification of M/ORF3-related ion channel proteins in coronaviruses and other nidoviruses |
Yongjun Tan, Theresa Schneider, Prakash K Shukla, Mahesh B Chandrasekharan, L Aravind, Dapeng Zhang |
| 70 |
[GO] |
2021―Feb―15 |
SARS-CoV-2 genomic analyses in cancer patients reveal elevated intrahost genetic diversity |
Juliana D Siqueira, Livia R Goes, Brunna M Alves, Pedro S de Carvalho, Claudia Cicala, James Arthos, João P B Viola, Andréia C de Melo, Marcelo A Soares |
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