| |
original article |
Journal |
Date |
Title |
Authors Max. 6 Authors |
| 1 |
[GO] |
RNA |
2024―Jul―31 |
Abolished frameshifting for predicted structure-stabilizing SARS-CoV-2 mutants: Implications to alternative conformations and their statistical structural analyses |
Abhishek Dey, Shuting Yan, Tamar Schlick, Alain Laederach |
| 2 |
[GO] |
RNA |
2024―Jun―28 |
Adenosine modifications impede SARS-CoV-2 RNA-dependent RNA transcription |
Laura R Snyder, Ingrid Kilde, Artem Nemudryi, Blake Wiedenheft, Markos Koutmos, Kristin S Koutmou |
| 3 |
[GO] |
RNA |
2024―Apr―02 |
NMR characterization and ligand binding site of the stem loop 2 motif (s2m) from the Delta variant of SARS-CoV-2 |
Tobias Matzel, Maria Wirtz Martin, Alexander Herr, Anna Wacker, Christian Richter, Sridhar Sreeramulu, Harald Schwalbe |
| 4 |
[GO] |
RNA |
2023―Oct―30 |
Motifs in SARS-CoV-2 evolution |
Christopher L. Barrett, Andrei C. Bura, Qijun He, Fenix W. Huang, Thomas J.X. Li, Christian M. Reidys |
| 5 |
[GO] |
Genes & Development |
2023―Oct―11 |
In vitro reconstitution of SARS-CoV-2 Nsp1-induced mRNA cleavage reveals the key roles of the N-terminal domain of Nsp1 and the RRM domain of eIF3g |
Irina S. Abaeva, Yani Arhab, Anna Miścicka, Christopher U.T. Hellen, Tatyana V. Pestova |
| 6 |
[GO] |
RNA |
2023―Aug―21 |
Effect of the SARS-CoV-2 Delta-associated G15U mutation on the s2m element dimerization and its interactions with miR-1307-3p |
Caylee L Cunningham, Caleb J Frye, Joseph A Makowski, Adam H Kensinger, Morgan Shine, Ella J Milback, Patrick E Lackey, Jeffrey D Evanseck, Mihaela Rita Mihailescu |
| 7 |
[GO] |
Genome Research |
2023―Mar―09 |
Global loss of cellular m6A RNA methylation following infection with different SARS-CoV-2 variants |
Roshan Vaid, Akram Mendez, Ketan Thombare, Rebeca Burgos Panadero, Rémy Robinot, Barbara F Fonseca, Nikhil R Gandasi, Johan Ringlander, Mohammad Hassan Baig, Jae-June Dong, Jae Yong Cho, Björn Reinius, Lisa A Chakrabarti, Kristina Nystrom, Tanmoy Mondal |
| 8 |
[GO] |
RNA |
2023―Mar―08 |
No evidence for epitranscriptomic m5C modification of SARS-CoV-2, HIV and MLV viral RNA |
Anming Huang, Lydia Riepler, Dietmar Rieder, Janine Kimpel, Alexandra Lusser |
| 9 |
[GO] |
Molecular Case Studies |
2022―Jul―13 |
Genomic surveillance of SARS-CoV-2 during the first year of the pandemic in the Bronx enabled clinical and epidemiological inference |
J. Maximilian Fels, Saad Khan, Ryan Forster, Karin A Skalina, Surksha Sirichand, Amy S Fox, Aviv Bergman, William B Mitchell, Lucia R Wolgast, Wendy A Szymczak, Robert H Bortz, M Eugenia Dieterle, Catalina Florez, Denise Haslwanter, Rohit K Jangra, Ethan Laudermilch, Ariel S Wirchnianski, Jason Barnhill, David L Goldman, Hnin Khine, D. Yitzchak Goldstein, Johanna P Daily, Kartik Chandran, Libusha Kelly |
| 10 |
[GO] |
Cold Spring Harbor Perspectives in Medicine |
2022―May―23 |
Endothelialitis, Microischemia, and Intussusceptive Angiogenesis in COVID-19 |
Steven J. Mentzer, Maximilian Ackermann, Danny Jonigk |
| 11 |
[GO] |
Cold Spring Harbor Perspectives in Medicine |
2022―May―06 |
The Evolution and Biology of SARS-CoV-2 Variants |
Amalio Telenti, Emma B. Hodcroft, David L. Robertson |
| 12 |
[GO] |
RNA |
2022―May―04 |
Rampant C-to-U deamination accounts for the intrinsically high mutation rate in SARS-CoV-2 spike gene |
Xueyan Liu, Xuan Liu, Jie Zhou, Yu Dong, Wen Jiang, Wenqing Jiang |
| 13 |
[GO] |
RNA |
2022―Mar―02 |
Correlated sequence signatures are present within the genomic 5’UTR RNA and NSP1 protein in coronaviruses |
Piotr Sosnowski, Antonin Tidu, Gilbert Eriani, Eric Westhof, Franck Martin |
| 14 |
[GO] |
RNA |
2022―Mar―01 |
The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression |
Lucija Bujanic, Olga Shevchuk, Nicolai von Kügelgen, Anna Kalinina, Katarzyna Ludwik, David Koppstein, Nadja Zerna, Albert Sickmann, Marina Chekulaeva |
| 15 |
[GO] |
Genome Research |
2022―Jan―21 |
Plasma cell-free RNA characteristics in COVID-19 patients |
Yanqun Wang, Jie Li, Lu Zhang, Hai-Xi Sun, Zhaoyong Zhang, Jinjin Xu, Yonghao Xu, Yu Lin, Airu Zhu, Yuxue Luo, Haibo Zhou, Yan Wu, Shanwen Lin, Yuzhe Sun, Fei Xiao, Ruiying Chen, Liyan Wen, Wei Chen, Fang Li, Rijing Ou, Yanjun Zhang, Tingyou Kuo, Yuming Li, Lingguo Li, Jing Sun, Kun Sun, Zhen Zhuang, Haorong Lu, Zhao Chen, Guoqiang Mai, Jianfen Zhuo, Puyi Qian, Jiayu Chen, Huanming Yang, Jian Wang, Xun Xu, Nanshan Zhong, Jingxian Zhao, Junhua Li, Jincun Zhao, Xin Jin |
| 16 |
[GO] |
RNA |
2021―Dec―22 |
sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs |
Andrea Di Gioacchino, Rachel Legendre, Yannis Rahou, Valérie Najburg, Pierre Charneau, Benjamin D Greenbaum, Frédéric Tangy, Sylvie van der Werf, Simona Cocco, Anastassia V Komarova |
| 17 |
[GO] |
RNA |
2021―Nov―29 |
Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot |
Christopher P Jones, Adrian R Ferre-D'Amare |
| 18 |
[GO] |
RNA |
2021―Jul―27 |
SARS-CoV-2 infection triggers widespread host mRNA decay leading to an mRNA export block |
James M. Burke, Laura A. St Clair, Rushika Perera, Roy Parker |
| 19 |
[GO] |
Genes & Development |
2021―Jun―24 |
Targeting the m6A RNA modification pathway blocks SARS-CoV-2 and HCoV-OC43 replication |
Hannah M. Burgess, Daniel P. Depledge, Letitia Thompson, Kalanghad Puthankalam Srinivas, Rebecca C. Grande, Elizabeth I. Vink, Jonathan S. Abebe, Wesley P. Blackaby, Alan Hendrick, Mark R. Albertella, Tony Kouzarides, Kenneth A. Stapleford, Angus C. Wilson, Ian Mohr |
| 20 |
[GO] |
RNA |
2021―Jun―14 |
Genes with 5' terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 NSP1 protein |
Shilpa Rao, Ian Hoskins, Tori Tonn, Daniela Garcia, Hakan Ozadam, Elif Sarinay Cenik, Can Cenik |
| 21 |
[GO] |
Genome Research |
2021―Mar―15 |
Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data |
Matthew D. Parker, Benjamin B. Lindsey, Shay Leary, Silvana Gaudieri, Abha Chopra, Matthew Wyles, Adrienn Angyal, Luke R. Green, Paul Parsons, Rachel M. Tucker, Rebecca Brown, Danielle Groves, Katie Johnson, Laura Carrilero, Joe Heffer, David G. Partridge, Cariad Evans, Mohammad Raza, Alexander J. Keeley, Nikki Smith, Ana Da Silva Filipe, James G. Shepherd, Chris Davis, Sahan Bennett, Vattipally B. Sreenu, Alain Kohl, Elihu Aranday-Cortes, Lily Tong, Jenna Nichols, Emma C. Thomson, Dennis Wang, Simon Mallal, Thushan I. de Silva |
| 22 |
[GO] |
Genome Research |
2021―Feb―18 |
Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission |
Nicolae Sapoval, Medhat Mahmoud, Michael Jochum, Yunxi Liu, R.A. Leo Elworth, Qi Wang, Dreycey Albin, Huw Ogilvie, Michael D. Lee, Sonia Villapol, Kyle Hernandez, Irina Maljkovic Berry, Jonathan Foox, Afshin Beheshti, Krista Ternus, Kjersti Aagaard, David Posada, Christopher Mason, Fritz J Sedlazeck, Todd J Treangen |
| 23 |
[GO] |
Molecular Case Studies |
2021―Feb―16 |
The Gut Microbiome: A Missing Link in Understanding the Gastrointestinal manifestations of COVID-19? |
Erin Brooks, Ami S Bhatt |
| 24 |
[GO] |
RNA |
2020―Dec―02 |
The viral protein NSP1 acts as a ribosome gatekeeper for shutting down host translation and fostering SARS-CoV-2 translation |
Antonin TIDU, Aurelie JANVIER, Laure SCHAEFFER, Piotr SOSNOWSKI, Lauriane KUHN, Philippe HAMMANN, Eric WESTHOF, Gilbert ERIANI, Franck MARTIN |
| 25 |
[GO] |
Genome Research |
2020―Oct―22 |
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City Region |
Matthew T Maurano, Sitharam Ramaswami, Paul Zappile, Dacia Dimartino, Ludovic Boytard, André M. Ribeiro-dos-Santos, Nicholas A. Vulpescu, Gael Westby, Guomiao Shen, Xiaojun Feng, Megan S. Hogan, Manon Ragonnet-Cronin, Lily Geidelberg, Christian Marier, Peter Meyn, Yutong Zhang, John A. Cadley, Raquel Ordoñez, Raven Luther, Emily Huang, Emily Guzman, Carolina Arguelles-Grande, Kimon V. Argyropoulos, Margaret Black, Antonio Serrano, Melissa E. Call, Min Jae Kim, Brendan Belovarac, Tatyana Gindin, Andrew Lytle, Jared Pinnell, Theodore Vougiouklakis, John Chen, Lawrence H. Lin, Amy Rapkiewicz, Vanessa Raabe, Marie I. Samanovic, George Jour, Iman Osman, Maria Aguero-Rosenfeld, Mark J. Mulligan, Erik M. Volz, Paolo Cotzia, Matija Snuderl, Adriana Heguy |
| 26 |
[GO] |
RNA |
2020―Sep―28 |
Physiologic RNA Targets and Refined Sequence Specificity of Coronavirus EndoU |
Rachel Ancar, Yize Li, Eveline Kindler, Daphne A. Cooper, Monica Ransom, Volker Thiel, Susan R. Weiss, Jay R. Hesselberth, David J. Barton |
| 27 |
[GO] |
Genome Research |
2020―Sep―02 |
Mapping genome variation of SARS-CoV-2 worldwide highlights the impact of COVID-19 super-spreaders |
Alberto Gomez-Carballa, Xabi Bello, Jacobo Pardo-Seco, Federico Martinon-Torres, Antonio Salas |
| 28 |
[GO] |
RNA |
2020―May―12 |
RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look |
Ramya Rangan, Ivan N Zheludev, Rhiju Das |
| 29 |
[GO] |
RNA |
2020―May―02 |
Overcoming the bottleneck to widespread testing: A rapid review of nucleic acid testing approaches for COVID-19 detection |
Meagan N Esbin, Oscar N Whitney, Shasha Chong, Anna Maurer, Xavier Darzacq, Robert Tjian |
| 30 |
[GO] |
Cold Spring Harbor Perspectives in Medicine |
2019―Dec―24 |
The 1918 Influenza Pandemic and Its Legacy |
Jeffery K. Taubenberger, David M. Morens |
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