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COVID answers in Scientific Journals all over the world

Publishing House: American Society for Microbiology

2394 Results       Page 1

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  original article Journal Date Title Authors All Authors
1 [GO] Microbiology Spectrum 2024―Jul―22 Advancing COVID-19 diagnostics: rapid detection of intact SARS-CoV-2 using viability RT-PCR assay Judith M. J. Veugen, Tom Schoenmakers, Inge H. M. van Loo, Bart L. Haagmans, Mathie P. G. Leers, Mart M. Lamers, et al. (+8)
2 [GO] mBio 2024―Jul―22 SARS-CoV-2 infection predisposes patients to coinfection with Staphylococcus aureus Ashira Lubkin, Lucie Bernard-Raichon, Ashley L. DuMont, Ana Mayela Valero Jimenez, Gregory G. Putzel, Juan Gago, et al. (+32)
3 [GO] mBio 2024―Jul―22 Identification of HRH1 as an alternative receptor for SARS-CoV-2: insights from viral inhibition by repurposable antihistamines Gang Zhong, Jinrong Li, Huiqing Wang, Sabra Klein
4 [GO] Journal of Virology 2024―Jul―19 Structural determinants of spike infectivity in bat SARS-like coronaviruses RsSHC014 and WIV1 Shuyuan Qiao, Xinquan Wang, Tom Gallagher
5 [GO] Antimicrobial Agents and Chemotherapy 2024―Jul―18 Remdesivir treatment does not reduce viral titers in patients with COVID-19 Isa Faghihi, Victoria C. Yan, Miguel Angel Martinez
6 [GO] Antimicrobial Agents and Chemotherapy 2024―Jul―17 H 2 inhalation therapy in patients with moderate COVID-19 (H 2 COVID): a prospective ascending-dose phase I clinical trial C. Salomez-Ihl, J. Giai, M. Barbado, A. Paris, S. Touati, J. P. Alcaraz, et al. (+13)
7 [GO] Microbiology Spectrum 2024―Jul―16 Ronapreve (REGN-CoV; casirivimab and imdevimab) reduces the viral burden and alters the pulmonary response to the SARS-CoV-2 Delta variant (B.1.617.2) in K18-hACE2 mice using an experimental design reflective of a treatment use case Lee Tatham, Anja Kipar, Jo Sharp, Edyta Kijak, Joanne Herriott, Megan Neary, et al. (+12)
8 [GO] Applied and Environmental Microbiology 2024―Jul―16 Highly sensitive wastewater surveillance of SARS-CoV-2 variants by targeted next-generation amplicon sequencing provides early warning of incursion in Victoria, Australia James E. Merrett, Monica Nolan, Leon Hartman, Nijoy John, Brianna Flynn, Louise Baker, et al. (+8)
9 [GO] Microbiology Spectrum 2024―Jul―11 Non-pharmaceutical interventions for COVID-19 transiently reduced pneumococcal and Haemophilus influenzae carriage in a cross-sectional pediatric cohort in Southampton, UK David W. Cleary, James Campling, Maria Lahuerta, Kyla Hayford, Jo Southern, Bradford D. Gessner, et al. (+5)
10 [GO] Microbiology Spectrum 2024―Jul―11 Diagnostic accuracy of Savanna RVP4 (QuidelOrtho) for the detection of Influenza A virus, RSV, and SARS-CoV-2 Büsra Köse, Frieder Schaumburg, Melissa R. Gitman
11 [GO] mBio 2024―Jul―02 The histamine receptor H1 acts as an alternative receptor for SARS-CoV-2 Fei Yu, Xiaoqing Liu, Hailan Ou, Xinyu Li, Ruxin Liu, Xi Lv, et al. (+16)
12 [GO] Journal of Virology 2024―Jul―02 SARS-CoV-2 BA.4/5 infection triggers more cross-reactive FcγRIIIa signaling and neutralization than BA.1, in the context of hybrid immunity Simone I. Richardson, Nonkululeko Mzindle, Thopisang Motlou, Nelia P. Manamela, Mieke A. van der Mescht, Bronwen E. Lambson, et al. (+16)
13 [GO] Journal of Virology 2024―Jun―28 An ex vivo human precision-cut lung slice platform provides insight into SARS-CoV-2 pathogenesis and antiviral drug efficacy Roger D. Pechous, Priyangi A. Malaviarachchi, Srijon K. Banerjee, Stephanie D. Byrum, Duah H. Alkam, Alireza Ghaffarieh, et al. (+4)
14 [GO] Microbiology Spectrum 2024―Jun―25 Sensitivity analysis of RT-qPCR and RT-ddPCR for SARS-CoV-2 detection with mutations on N1 and E primer-probe region Shiyou Liu, Xiaoru Chai, Chao Liu, Jiaxuan Bai, Juntao Meng, Hong Tian, et al. (+5)
15 [GO] Microbiology Spectrum 2024―Jun―25 Construction and immunogenicity of SARS-CoV-2 virus-like particle expressed by recombinant baculovirus BacMam Hai Trong Nguyen, Darryl Falzarano, Volker Gerdts, Qiang Liu, Leonidas Stamatatos
16 [GO] Microbiology Spectrum 2024―Jun―24 Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance program Ana Jung, Lindsay Droit, Binita Febles, Catarina Fronick, Lisa Cook, Scott A. Handley, et al. (+3)
17 [GO] mBio 2024―Jun―20 IL-9 plays a critical role in helminth-induced protection against COVID-19-related cytokine storms ChunXiao Xiang, Gang Zhong, Huiqing Wang, Chunfu Zheng
18 [GO] Journal of Virology 2024―Jun―20 Genetic barrier to resistance: a critical parameter for efficacy of neutralizing monoclonal antibodies against SARS-CoV-2 in a nonhuman primate model Christiane Stahl-Hennig, Antonia Sophia Peter, Arne Cordsmeier, Nicole Stolte-Leeb, Ramona Vestweber, Eileen Socher, et al. (+10)
19 [GO] Journal of Virology 2024―Jun―20 A BSL-2 compliant mouse model of SARS-CoV-2 infection for efficient and convenient antiviral evaluation Zinuo Chen, Qinghua Cui, Yan Ran, Jazmin Galvan Achi, Zhaoyu Chen, Lijun Rong, et al. (+2)
20 [GO] mBio 2024―Jun―18 Estimating the productivity cost of administrative duties and work-related engagements from submission trends during COVID-19 pandemic lockdown Arturo Casadevall, Lorraine F. Clark
21 [GO] Journal of Clinical Microbiology 2024―Jun―18 Performance evaluation of the Panbio COVID-19/Flu A&B Panel for detection of SARS-CoV-2, influenza A, and influenza B antigens using mid-turbinate nasal swabs Shao-Hua Yu, Keun-Ju Kim, Chien-Chang Lee, Yanely Pineiro Puebla, Gelza Mae A. Zabat, Hong-Mo Shih, et al. (+2)
22 [GO] Journal of Virology 2024―Jun―18 Mutations in nonstructural proteins essential for pathogenicity in SARS-CoV-2-infected mice Ruangang Pan, Pengfei Li, David K. Meyerholz, Stanley Perlman, Shan-Lu Liu
23 [GO] Journal of Clinical Microbiology 2024―Jun―14 Generation of recombinant viruses directly from clinical specimens of COVID-19 patients Hirotaka Yamamoto, Tomokazu Tamura, Takaya Ichikawa, Yudai Taguchi, Kento Mori, Satoshi Oguri, et al. (+5)
24 [GO] Infection and Immunity 2024―Jun―14 Long-term changes in the phenotype and cytokine production of monocytes in COVID-19 recovered and vaccinated individuals Yekaterina O. Ostapchuk, Anzhelika V. Lushova, Sofia A. Kan, Nurshat Abdolla, Aikyn Kali, Raikhan Tleulieva, et al. (+3)
25 [GO] Journal of Microbiology and Biology Education 2024―Jun―14 Non-STEM majors COVID-19 vaccine impressions improve, and misconceptions resolve, after podcast assignment Christina N. Morra, Sarah J. Adkins, M. Elizabeth Barnes, Obadiah J. Pirlo, Ryleigh Fleming, Bianca J. Convers, et al. (+4)
26 [GO] Journal of Virology 2024―Jun―14 Trimerized S expressed by modified vaccinia virus Ankara (MVA) confers superior protection against lethal SARS-CoV-2 challenge in mice Junda Zhu, Zhenshan Wang, Yarui Li, Zihui Zhang, Shuning Ren, Jing Wang, et al. (+7)
27 [GO] Microbiology Spectrum 2024―Jun―13 Comparison of SARS-CoV-2 seroprevalence estimates between commercial lab serum specimens and blood donor specimens, United States, September-December 2021 Szu-Yu Zoe Kao, Elise Nycz, Tina J. Benoit, Kristie E. N. Clarke, Jefferson M. Jones, Gabriel I. Parra
28 [GO] Microbiology Spectrum 2024―Jun―12 Seasonal human coronaviruses OC43, 229E, and NL63 induce cell surface modulation of entry receptors and display host cell-specific viral replication kinetics Vinayakumar Siragam, Mariam Maltseva, Nicolas Castonguay, Yannick Galipeau, Mrudhula Madapuji Srinivasan, Justino Hernandez Soto, et al. (+3)
29 [GO] Microbiology Resource Announcements 2024―Jun―07 Setu: a pipeline for the robust assembly of SARS-CoV-2 genomes Nityendra Shukla, Neha Srivastava, Prachi Srivastava, Jitendra Narayan, Simon Roux
30 [GO] Journal of Virology 2024―Jun―03 Dipeptidyl peptidase 4 interacts with porcine coronavirus PHEV spikes and mediates host range expansion Junchao Shi, Shiyu Hu, Hanlu Wei, Le Zhang, Yungang Lan, Jiyu Guan, et al. (+5)
31 [GO] Journal of Virology 2024―May―31 Human coronavirus OC43 infection remodels connexin 43-mediated gap junction intercellular communication in vitro Souvik Karmakar, Jayasri Das Sarma, Tom Gallagher
32 [GO] mSystems 2024―May―31 SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA’s GenomeTrakr network Ruth E. Timme, Jacquelina Woods, Jessica L. Jones, Kevin R. Calci, Rachel Rodriguez, Candace Barnes, et al. (+108)
33 [GO] Journal of Virology 2024―May―30 Migraine inhibitor olcegepant reduces weight loss and IL-6 release in SARS-CoV-2-infected older mice with neurological signs Shafaqat M. Rahman, David W. Buchholz, Brian Imbiakha, Mason C. Jager, Justin Leach, Raven M. Osborn, et al. (+5)
34 [GO] Microbiology Spectrum 2024―May―29 An observational study investigating soluble immune checkpoints as indicators of severe COVID-19 Ricarda Cortés-Vieyra, Sergio Gutiérrez-Castellanos, Anel Gómez-García, Alejandro Bravo-Patiño, Fernando Calderón-Rico, José Daniel Martínez-Sepúlveda, et al. (+6)
35 [GO] Journal of Clinical Microbiology 2024―May―24 Highly sensitive extraction-free saliva-based molecular assay for rapid diagnosis of SARS-CoV-2 Michael Margulis, Hanan Rohana, Oran Erster, Michal Mandelboim, Asaf Biber, Eli Schwartz, et al. (+3)
36 [GO] Journal of Virology 2024―May―24 Correction for Domingo et al., “Puzzles, challenges, and information reservoir of SARS-CoV-2 quasispecies” Esteban Domingo, Brenda Martínez-González, Carlos García-Crespo, Pilar Somovilla, Ana Isabel de Ávila, María Eugenia Soria, et al. (+2)
37 [GO] mBio 2024―May―23 Applying lessons of COVID-19 and other emerging infectious diseases to future outbreaks Evan M. Bloch, David J. Sullivan, Arturo Casadevall, Shmuel Shoham, Aaron A. R. Tobian, Kelly Gebo, Louis M. Weiss
38 [GO] Journal of Clinical Microbiology 2024―May―22 Proceedings of the Clinical Microbiology Open 2023: discussions about pandemic preparedness Eleanor A. Powell, Alexander L. Greninger, Elizabeth M. Marlowe, Samia N. Naccache, Christopher D. Doern, Romney M. Humphries
39 [GO] Clinical Microbiology Reviews 2024―May―21 COVID-19 therapeutics Daniele Focosi, Massimo Franchini, Fabrizio Maggi, Shmuel Shoham, Graeme N. Forrest
40 [GO] mBio 2024―May―21 Development of a mutant aerosolized ACE2 that neutralizes SARS-CoV-2 in vivo Daniel L. Kober, Marley C. Caballero Van Dyke, Jennifer L. Eitson, Ian N. Boys, Matthey B. McDougal, Daniel M. Rosenbaum, et al. (+2)
41 [GO] Journal of Virology 2024―May―20 S309-CAR-NK cells bind the Omicron variants in vitro and reduce SARS-CoV-2 viral loads in humanized ACE2-NSG mice Minh Tuyet Ma, Qingkui Jiang, Chih-Hsiung Chen, Saiaditya Badeti, Xuening Wang, Cong Zeng, et al. (+12)
42 [GO] Microbiology Spectrum 2024―May―17 Post-market surveillance of six COVID-19 point-of-care tests using pre-Omicron and Omicron SARS-CoV-2 variants Hannah M. Exner, Branden S. J. Gregorchuk, AC-Green Castor, Leandro Crisostomo, Kurt Kolsun, Shayna Giesbrecht, et al. (+9)
43 [GO] mSystems 2024―May―16 Comparative analysis of dynamic transcriptomes reveals specific COVID-19 features and pathogenesis of immunocompromised populations Xiaodi Yang, Jialin Zhu, Qingyun Wang, Bo Tang, Ye Shen, Bingjie Wang, et al. (+7)
44 [GO] Microbiology Spectrum 2024―May―15 Analytical validation of a semi-automated methodology for quantitative measurement of SARS-CoV-2 RNA in wastewater collected in northern New England Ashlee A. Robbins, Torrey L. Gallagher, Diana M. Toledo, K. Chase Hershberger, Sabrina M. Salmela, Rachael E. Barney, et al. (+6)
45 [GO] Microbiology Spectrum 2024―May―15 Optimizing SARS-CoV-2 vaccine responses in kidney transplant recipients: an urgent need Yi-Ling Cheng, Shen-Shin Chang, Chiao-Hsuan Chao, Po-Ta Chen, Ya-Lan Lin, Guan-Da Syu, et al. (+5)
46 [GO] Antimicrobial Agents and Chemotherapy 2024―May―14 Inhibition of endocytic uptake of severe acute respiratory syndrome coronavirus 2 and endo-lysosomal acidification by diphenoxylate Jin Soo Shin, Yejin Jang, Dong-Su Kim, Eunhye Jung, Myoung Kyu Lee, Byungil Kim, et al. (+9)
47 [GO] Journal of Virology 2024―May―14 Optimization of quenched fluorescent peptide substrates of SARS-CoV-2 3CL pro main protease (Mpro) from proteomic identification of P6-P6' active site specificity Hugo Cesar Ramos de Jesus, Nestor Solis, Yoan Machado, Isabel Pablos, Peter A. Bell, Reinhild Kappelhoff, et al. (+5)
48 [GO] mBio 2024―May―10 Helminth alleviates COVID-19-related cytokine storm in an IL-9-dependent way Zengguo Cao, Jiaqi Wang, Xiaolei Liu, Yang Liu, Fangxu Li, Mingyuan Liu, et al. (+3)
49 [GO] Journal of Virology 2024―May―06 Human coronavirus OC43 nanobody neutralizes virus and protects mice from infection Amy Adair, Li Lynn Tan, Jackson Feng, Jason Girkin, Nathan Bryant, Mingyang Wang, et al. (+7)
50 [GO] Journal of Virology 2024―May―06 Multiple E3 ligases act as antiviral factors against SARS-CoV-2 via inducing the ubiquitination and degradation of ORF9b Miao Yu, Jie Li, Wenying Gao, Zhaolong Li, Wenyan Zhang, Kanta Subbarao
51 [GO] mSystems 2024―May―03 Association between gut microbiota dysbiosis and poor functional outcomes in acute ischemic stroke patients with COVID-19 infection Jiaying Chen, Xuxuan Gao, Jingru Liang, Qiheng Wu, Linlin Shen, Yifeng Zheng, et al. (+5)
52 [GO] Microbiology Spectrum 2024―Apr―30 SARS-CoV-2 cellular and humoral responses in vaccine-naive individuals during the first two waves of COVID-19 infections in the southern region of The Netherlands: a cross-sectional population-based study D. A. T. Hanssen, K. Arts, W. H. V. Nix, N. N. B. Sweelssen, T. T. J. Welbers, C. de Theije, et al. (+9)
53 [GO] Microbiology Spectrum 2024―Apr―30 Tocilizumab demonstrates superiority in decreasing C-reactive protein levels in hospitalized COVID-19 patients, compared to standard care treatment alone Carolina Calderón-Ochoa, Narek Plamenov-Donchev, Fernando Hernández-Quiñones, Olga Mendoza-López, Luis Carlos Hinojos-Gallardo, Asunción José Longino-Gómez, et al. (+4)
54 [GO] Microbiology Spectrum 2024―Apr―30 An enhanced IL17 and muted type I interferon nasal epithelial cell state characterizes severe COVID-19 with fungal coinfection Carly G. K. Ziegler, Anna H. Owings, Michelle Galeas-Pena, Samuel W. Kazer, Vincent N. Miao, Andrew W. Navia, et al. (+19)
55 [GO] Microbiology Spectrum 2024―Apr―29 Comparative evaluation of RT-PCR and antigen-based rapid diagnostic tests (Ag-RDTs) for SARS-CoV-2 detection: performance, variant specificity, and clinical implications Frank T. Aboagye, Lawrence Annison, Henry Kwadwo Hackman, Maame E. Acquah, Yvonne Ashong, Isaac Owusu-Frimpong, et al. (+5)
56 [GO] Microbiology Resource Announcements 2024―Apr―24 Coding-complete genomes of 18 SARS-CoV-2 Omicron JN.1, JN.1.4, and JN.1.11 sub-lineages in Bangladesh Anika Tahsin, Mahin Hasan, Saikt Rahman, Mohammad Jubair, Mokibul Hassan Afrad, Manjur Hossain Khan, et al. (+13)
57 [GO] Journal of Virology 2024―Apr―23 Harnessing the power of IFN for therapeutic approaches to COVID-19 Elise G. Viox, Steven E. Bosinger, Daniel C. Douek, Gideon Schreiber, Mirko Paiardini, David E. Levy
58 [GO] Journal of Virology 2024―Apr―23 The TRAF3-DYRK1A-RAD54L2 complex maintains ACE2 expression to promote SARS-CoV-2 infection Dexin Mao, Shufeng Liu, An Thanh Phan, Stephanie Renner, Yan Sun, Tony T. Wang, et al. (+2)
59 [GO] Microbiology Spectrum 2024―Apr―23 Spatiotemporal transmission of SARS-CoV-2 lineages during 2020-2021 in Pernambuco-Brazil Lais Ceschini Machado, Filipe Zimmer Dezordi, Gustavo Barbosa de Lima, Raul Emídio de Lima, Lilian Caroliny Amorim Silva, Leandro de Mattos Pereira, et al. (+23)
60 [GO] Microbiology Resource Announcements 2024―Apr―23 Emergence of SARS-CoV-2 Omicron sub-lineage JN.1 in Bangladesh Manjur Hossain Khan Jony, Ahmed Nawsher Alam, Md. Abdullah Omar Nasif, Sharmin Sultana, Rubaid Anwar, Mithun Rudra, et al. (+5)
61 [GO] Microbiology Spectrum 2024―Apr―22 Partial N-gene target failure in the Seegene Allplex SARS-CoV-2 Master Assay as a proxy of SARS-CoV-2 BA.2.86 Maria Beatrice Valli, Maria Letizia Schiavone, Martina Rueca, Giulia Berno, Pietro Giorgio Spezia, Cesare Ernesto Maria Gruber, et al. (+7)
62 [GO] Journal of Virology 2024―Apr―19 Identification of a membrane-associated element (MAE) in the C-terminal region of SARS-CoV-2 nsp6 that is essential for viral replication Yuying Han, Zhenghong Yuan, Zhigang Yi, Tom Gallagher
63 [GO] Journal of Virology 2024―Apr―16 Genes involved in the limited spread of SARS-CoV-2 in the lower respiratory airways of hamsters may be associated with adaptive evolution Kosuke Takada, Yasuko Orba, Yurie Kida, Jiaqi Wu, Chikako Ono, Yoshiharu Matsuura, et al. (+4)
64 [GO] Journal of Virology 2024―Apr―16 Epitopes of an antibody that neutralizes a wide range of SARS-CoV-2 variants in a conserved subdomain 1 of the spike protein Hanako Ishimaru, Mitsuhiro Nishimura, Hideki Shigematsu, Maria Istiqomah Marini, Natsumi Hasegawa, Rei Takamiya, et al. (+3)
65 [GO] mBio 2024―Apr―11 Outpatient treatment with concomitant vaccine-boosted convalescent plasma for patients with immunosuppression and COVID-19 Juan G. Ripoll, Sidna M. Tulledge-Scheitel, Anthony A. Stephenson, Shane Ford, Marsha L. Pike, Ellen K. Gorman, et al. (+19)
66 [GO] Journal of Virology 2024―Apr―09 Efficacy of host cell serine protease inhibitor MM3122 against SARS-CoV-2 for treatment and prevention of COVID-19 Adrianus C. M. Boon, Traci L. Bricker, Ethan J. Fritch, Sarah R. Leist, Kendra Gully, Ralph S. Baric, et al. (+5)
67 [GO] Journal of Virology 2024―Apr―09 Molecular basis of hippopotamus ACE2 binding to SARS-CoV-2 Ruirui Yang, Pu Han, Pengcheng Han, Dedong Li, Runchu Zhao, Sheng Niu, et al. (+5)
68 [GO] mBio 2024―Apr―09 Distinct patterns of SARS-CoV-2 BA.2.87.1 and JN.1 variants in immune evasion, antigenicity, and cell-cell fusion Pei Li, Yajie Liu, Julia N. Faraone, Cheng Chih Hsu, Michelle Chamblee, Yi-Min Zheng, et al. (+11)
69 [GO] mBio 2024―Apr―09 The potentiality of bacteria to drive SARS-CoV-2 mutation Xiangyu Zhang, Shun Li, Mengzhou Xue, Chunfu Zheng
70 [GO] mBio 2024―Apr―08 Inhibition of influenza A virus and SARS-CoV-2 infection or co-infection by griffithsin and griffithsin-based bivalent entry inhibitor Najing Cao, Yanxing Cai, Xin Huang, Hanxiao Jiang, Ziqi Huang, Lixiao Xing, et al. (+4)
71 [GO] Journal of Virology 2024―Apr―04 Inhibition of the RLR signaling pathway by SARS-CoV-2 ORF7b is mediated by MAVS and abrogated by ORF7b-homologous interfering peptide Xiao Xiao, Yanan Fu, Wanling You, Congcong Huang, Feng Zeng, Xinsheng Gu, et al. (+8)
72 [GO] Journal of Virology 2024―Apr―02 A measles-vectored vaccine candidate expressing prefusion-stabilized SARS-CoV-2 spike protein brought to phase I/II clinical trials: protection of African green monkeys from COVID-19 disease Sham Nambulli, Nicolas Escriou, Linda J. Rennick, Matthew J. Demers, Natasha L. Tilston-Lunel, Anita K. McElroy, et al. (+15)
73 [GO] Microbiology Spectrum 2024―Apr―02 Experimental and analytical pipeline for sub-genomic RNA landscape of coronavirus by Nanopore sequencer Bo-Jia Chen, Ching-Hung Lin, Hung-Yi Wu, James J. Cai, Day-Yu Chao, Biao He
74 [GO] mSystems 2024―Apr―02 A novel fast hybrid capture sequencing method for high-efficiency common human coronavirus whole-genome acquisition Zixinrong Meng, Shuo Wang, Liping Yu, Kangchen Zhao, Tao Wu, Xiaojuan Zhu, et al. (+7)
75 [GO] Journal of Virology 2024―Apr―02 A measles-vectored vaccine candidate expressing prefusion-stabilized SARS-CoV-2 spike protein brought to phase I/II clinical trials: candidate selection in a preclinical murine model Jérémy Brunet, Zaineb Choucha, Marion Gransagne, Houda Tabbal, Min-Wen Ku, Julian Buchrieser, et al. (+18)
76 [GO] Microbiology Spectrum 2024―Apr―02 Rapid emergence of transmissible SARS-CoV-2 variants in mild community cases Michael A. Crone, Seran Hakki, Joe Fenn, Jie Zhou, Carolina Rosadas de Oliveira, Kieran J. Madon, et al. (+16)
77 [GO] Microbiology Spectrum 2024―Apr―01 Metagenomic next-generation sequencing of nasopharyngeal microbiota in COVID-19 patients with different disease severities Waleed Aljabr, Iman Dandachi, Basma Abbas, Alaa Karkashan, Ahod Al-Amari, Dayel AlShahrani, Benjamin M. Liu
78 [GO] Antimicrobial Agents and Chemotherapy 2024―Mar―27 Accelerating therapeutics development during a pandemic: population pharmacokinetics of the long-acting antibody combination AZD7442 (tixagevimab/cilgavimab) in the prophylaxis and treatment of COVID-19 Lindsay E. Clegg, Oleg Stepanov, Henning Schmidt, Weifeng Tang, Huixia Zhang, Chris Webber, et al. (+4)
79 [GO] Microbiology Spectrum 2024―Mar―27 SARS-CoV-2 pandemic non-pharmacologic interventions temporally associated with reduced pediatric infections due to Mycoplasma pneumoniae and co-infecting respiratory viruses in Arkansas Bobby L. Boyanton, Rachel A. Frenner, Ashton Ingold, Lilliam Ambroggio, Joshua L. Kennedy, Cecilia M. Thompson
80 [GO] mBio 2024―Mar―26 The human microbiota is a beneficial reservoir for SARS-CoV-2 mutations Birong Cao, Xiaoxi Wang, Wanchao Yin, Zhaobing Gao, Bingqing Xia, Chunfu Zheng
81 [GO] Microbiology Resource Announcements 2024―Mar―25 Coding-complete genomic sequence of a rhinovirus C-32 in a human nasal swab sample that tested false positive in a SARS-CoV-2 antigen test Tracey L. Moquin, Kuttichantran Subramaniam, John A. Lednicky, John J. Dennehy
82 [GO] mBio 2024―Mar―21 Erratum for Karaba et al., “Endemic Human Coronavirus Antibody Levels Are Unchanged after Convalescent or Control Plasma Transfusion for Early Outpatient COVID-19 Treatment” Andrew H. Karaba, Trevor S. Johnston, Evan Beck, Oliver Laeyendecker, Andrea L. Cox, Sabra L. Klein, David J. Sullivan
83 [GO] Applied and Environmental Microbiology 2024―Mar―21 Persistence and free chlorine disinfection of human coronaviruses and their surrogates in water Mengyang Zhang, Michelle Wei Leong, William A. Mitch, Catherine A. Blish, Alexandria Boehm, Christopher A. Elkins
84 [GO] Microbiology Spectrum 2024―Mar―21 Isolation and pathogenicity comparison of two novel natural recombinant porcine reproductive and respiratory syndrome viruses with different recombination patterns in Southwest China Bingzhou Huang, Lishuang Deng, Tong Xu, Zhijie Jian, Siyuan Lai, Yanru Ai, et al. (+3)
85 [GO] Microbiology Resource Announcements 2024―Mar―19 Genome sequencing of severe acute respiratory syndrome COVID-19 EF.1 variant strain obtained from a Moroccan patient Lahcen Ouchari, Mouhssine Hemlali, Hamza Ghammaz, Taha Chouati, Marouane Melloul, Sanaâ Alaoui Amine, et al. (+6)
86 [GO] mBio 2024―Mar―19 ACE-2-like enzymatic activity is associated with immunoglobulin in COVID-19 patients Yufeng Song, Regan Myers, Frances Mehl, Lila Murphy, Bailey Brooks, Jeffrey M. Wilson, et al. (+4)
87 [GO] Journal of Virology 2024―Mar―19 Functional dissection of the spike glycoprotein S1 subunit and identification of cellular cofactors for regulation of swine acute diarrhea syndrome coronavirus entry Yong-Le Yang, Bin Wang, Wentao Li, Hou-Li Cai, Qian-Yu Qian, Yu Qin, et al. (+4)
88 [GO] Journal of Virology 2024―Mar―19 The varying extent of humoral and cellular immune responses to either vector- or RNA-based SARS-CoV-2 vaccines persists for at least 18 months and is independent of infection Franz Mai, Wendy Bergmann, Emil C. Reisinger, Brigitte Müller-Hilke, Mark T. Heise
89 [GO] mSphere 2024―Mar―19 Phylogenetic lineage dynamics of global parainfluenza virus type 3 post-COVID-19 pandemic Kihyun Lee, Kuenyoul Park, Heungsup Sung, Mi-Na Kim, Michael J. Imperiale
90 [GO] Microbiology Spectrum 2024―Mar―18 Application of MALDI-TOF MS and machine learning for the detection of SARS-CoV-2 and non-SARS-CoV-2 respiratory infections Sergey Yegorov, Irina Kadyrova, Ilya Korshukov, Aidana Sultanbekova, Yevgeniya Kolesnikova, Valentina Barkhanskaya, et al. (+14)
91 [GO] Microbiology Spectrum 2024―Mar―18 How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, et al. (+43)
92 [GO] Journal of Virology 2024―Mar―17 Oligomeric assembly of the C-terminal and transmembrane region of SARS-CoV-2 nsp3 Marion Babot, Yves Boulard, Samira Agouda, Laura Pieri, Sonia Fieulaine, Stéphane Bressanelli, et al. (+2)
93 [GO] Clinical Microbiology Reviews 2024―Mar―17 Testing for SARS-CoV-2: lessons learned and current use cases Elitza S. Theel, James E. Kirby, Nira R. Pollock, Ferric C. Fang
94 [GO] Journal of Virology 2024―Mar―17 Implementing governmental oversight of enhanced potential pandemic pathogen research Richard H. Ebright, Raina MacIntyre, Joseph P. Dudley, Colin D. Butler, Andre Goffinet, Edward Hammond, et al. (+14)
95 [GO] Journal of Virology 2024―Mar―17 Reply to Ebright et al., “Implementing governmental oversight of enhanced potential pandemic pathogen research” Angela L. Rasmussen, Gigi Gronvall, Anice C. Lowen, Felicia Goodrum, Stacey Schultz-Cherry
96 [GO] mSphere 2024―Mar―13 Immune imprinting of SARS-CoV-2 responses: changing first immune impressions J. Torresi, M. A. Edeling, Genevieve G. Fouda
97 [GO] mBio 2024―Mar―13 Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating Nikhila S. Tanneti, Anant K. Patel, Li Hui Tan, Andrew D. Marques, Ranawaka A. P. M. Perera, Scott Sherrill-Mix, et al. (+10)
98 [GO] Antimicrobial Agents and Chemotherapy 2024―Mar―12 Two-way pharmacodynamic modeling of drug combinations and its application to pairs of repurposed Ebola and SARS-CoV-2 agents Shuang Xu, Shadisadat Esmaeili, E. Fabian Cardozo-Ojeda, Ashish Goyal, Judith M. White, Stephen J. Polyak, et al. (+2)
99 [GO] Microbiology Spectrum 2024―Mar―11 Lung microbiota composition, respiratory mechanics, and outcomes in COVID-19-related ARDS Gennaro De Pascale, Brunella Posteraro, Flavio De Maio, Pia Clara Pafundi, Eloisa Sofia Tanzarella, Salvatore Lucio Cutuli, et al. (+8)
100 [GO] Microbiology Spectrum 2024―Mar―11 Determination of the cycle threshold value of the Xpert Xpress SARS-CoV-2/Flu/RSV test that corresponds to the presence of infectious SARS-CoV-2 in anterior nasal swabs Ryan F. Relich, Kayla Van Benten, Guang-Sheng Lei, Christopher M. Robinson, Mariel Carozza, Malaya K. Sahoo, et al. (+10)
101 [GO] mBio 2024―Mar―08 SARS-CoV-2 Omicron infection augments the magnitude and durability of systemic and mucosal immunity in triple-dose CoronaVac recipients Yuxin Chen, Tiantian Zhao, Lin Chen, Guozhi Jiang, Yu Geng, Wanting Li, et al. (+8)
102 [GO] Journal of Virology 2024―Mar―06 The PKA-CREB1 axis regulates coronavirus proliferation by viral helicase nsp13 association Tong Zheng, Beilei Shen, Yu Bai, Entao Li, Xun Zhang, Yong Hu, et al. (+10)
103 [GO] Antimicrobial Agents and Chemotherapy 2024―Mar―06 BPR3P0128, a non-nucleoside RNA-dependent RNA polymerase inhibitor, inhibits SARS-CoV-2 variants of concern and exerts synergistic antiviral activity in combination with remdesivir Wen-Fang Tang, Yu-Hsiu Chang, Cheng-Chin Lin, Jia-Rong Jheng, Chung-Fan Hsieh, Yuan-Fan Chin, et al. (+24)
104 [GO] Microbiology Spectrum 2024―Mar―05 The serological immunogenicity of the third and fourth doses of COVID-19 vaccine in patients with inflammatory rheumatic diseases on different biologic or targeted DMARDs: a Swedish nationwide study (COVID-19-REUMA) Martina Frodlund, Per Nived, Katerina Chatzidionysiou, Anna Södergren, Eva Klingberg, Monica Hansson, et al. (+6)
105 [GO] Microbiology Spectrum 2024―Mar―04 Sequence signatures within the genome of SARS-CoV-2 can be used to predict host source Josip Rudar, Peter Kruczkiewicz, Oksana Vernygora, G. Brian Golding, Mehrdad Hajibabaei, Oliver Lung, Luciana Jesus Costa
106 [GO] mSphere 2024―Mar―01 Reduced control of SARS-CoV-2 infection associates with lower mucosal antibody responses in pregnancy Laura A. St Clair, Raghda E. Eldesouki, Jaiprasath Sachithanandham, Anna Yin, Amary Fall, C. Paul Morris, et al. (+15)
107 [GO] Microbiology Spectrum 2024―Mar―01 A Dried Blood Spot protocol for high-throughput quantitative analysis of SARS-CoV-2 RBD serology based on the Roche Elecsys system Noemi Castelletti, Ivana Paunovic, Raquel Rubio-Acero, Jessica Beyerl, Michael Plank, Christina Reinkemeyer, et al. (+8)
108 [GO] Journal of Virology 2024―Feb―29 The SARS-CoV-2 Spike is a virulence determinant and plays a major role on the attenuated phenotype of Omicron virus in a feline model of infection Mathias Martins, Mohammed Nooruzzaman, Jessie Lee Cunningham, Chengjin Ye, Leonardo Cardia Caserta, Nathaniel Jackson, et al. (+4)
109 [GO] Journal of Clinical Microbiology 2024―Feb―28 Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale Sung Yong Park, Gina Faraci, Pamela Ward, Ha Youn Lee, Alexander Mellmann
110 [GO] Microbiology Spectrum 2024―Feb―28 Characterization of a neutralizing antibody that recognizes a loop region adjacent to the receptor-binding interface of the SARS-CoV-2 spike receptor-binding domain Itsuki Anzai, Junso Fujita, Chikako Ono, Yoichiro Kosaka, Yuki Miyamoto, Shintaro Shichinohe, et al. (+11)
111 [GO] Microbiology Spectrum 2024―Feb―28 Vero cell-adapted SARS-CoV-2 strain shows increased viral growth through furin-mediated efficient spike cleavage Shohei Minami, Tomohiro Kotaki, Yusuke Sakai, Shinya Okamura, Shiho Torii, Chikako Ono, et al. (+13)
112 [GO] Microbiology Resource Announcements 2024―Feb―27 Whole-genome sequencing of SARS-CoV-2 from the initial cases of domestic cat infections in Canada Asma Sultana, Dorothee Bienzle, Scott Weese, Brad Pickering, Peter Kruczkiewicz, Greg Smith, et al. (+3)
113 [GO] mBio 2024―Feb―27 Nsp1 facilitates SARS-CoV-2 replication through calcineurin-NFAT signaling Wai-Yin Lui, Chon Phin Ong, Pak-Hin Hinson Cheung, Zi-Wei Ye, Chi-Ping Chan, Kelvin Kai-Wang To, et al. (+3)
114 [GO] mBio 2024―Feb―27 Temperature impacts SARS-CoV-2 spike fusogenicity and evolution Jérémy Dufloo, Rafael Sanjuán, Vaughn S. Cooper, Christopher B. Brooke
115 [GO] mBio 2024―Feb―26 Finally neutralizing the threat? A novel SARS-CoV-2 vaccine platform that elicits enhanced neutralizing antibody responses Daniel J. Salamango, Rino Rappuoli
116 [GO] Journal of Clinical Microbiology 2024―Feb―21 Proceedings of the Clinical Microbiology Open 2022-assessing clinical laboratory and industry responses to COVID-19 pandemic testing capacity challenges (part 1) David R. Peaper, Christopher D. Doern, Susan Sharp, Romney M. Humphries
117 [GO] Microbiology Spectrum 2024―Feb―20 Inhibition of SARS-CoV-2 replication by a ssDNA aptamer targeting the nucleocapsid protein Yanping Huang, Congcong Huang, Junkai Chen, Siwei Chen, Bei Li, Jian Li, et al. (+7)
118 [GO] Microbiology Spectrum 2024―Feb―20 Bisbenzimide compounds inhibit the replication of prototype and pandemic potential poxviruses Jerzy Samolej, Diogo Correa Mendonca, Nicole Upfold, Marion McElwee, Mariann Landsberger, Artur Yakimovich, et al. (+4)
119 [GO] mBio 2024―Feb―16 SARS-CoV-2 evolution during prolonged infection in immunocompromised patients Andrew D. Marques, Jevon Graham-Wooten, Ayannah S. Fitzgerald, Ashley Sobel Leonard, Emma J. Cook, John K. Everett, et al. (+6)
120 [GO] Microbiology Spectrum 2024―Feb―16 SARS-CoV-2 infection in brown-headed spider monkeys ( Ateles fusciceps ) at a wildlife rescue center on the coast of Ecuador-South America Mateo Carvajal, Carolina Saenz, Nathalia Fuentes, Rommel Guevara, Erika Muñoz, Belen Prado-Vivar, et al. (+8)
121 [GO] Microbiology Spectrum 2024―Feb―16 Nanobody engineering for SARS-CoV-2 neutralization and detection Liina Hannula, Suvi Kuivanen, Jonathan Lasham, Ravi Kant, Lauri Kareinen, Mariia Bogacheva, et al. (+10)
122 [GO] Microbiology Spectrum 2024―Feb―14 Humoral and cellular immune responses against SARS-CoV-2 post-vaccination in immunocompetent and immunocompromised cancer populations Elizabeth Titova, Veronica W. Kan, Tara Lozy, Andrew Ip, Kileen Shier, Vittal P. Prakash, et al. (+12)
123 [GO] mBio 2024―Feb―13 Two complete 1918 influenza A/H1N1 pandemic virus genomes characterized by next-generation sequencing using RNA isolated from formalin-fixed, paraffin-embedded autopsy lung tissue samples along with evidence of secondary bacterial co-infection Yongli Xiao, Zong-Mei Sheng, Stephanie L. Williams, Jeffery K. Taubenberger, John A. Lednicky
124 [GO] mBio 2024―Feb―13 Calpain-2 mediates SARS-CoV-2 entry via regulating ACE2 levels Qiru Zeng, Avan Antia, Luis Alberto Casorla-Perez, Maritza Puray-Chavez, Sebla B. Kutluay, Matthew A. Ciorba, et al. (+2)
125 [GO] Microbiology Spectrum 2024―Feb―12 Effect of COVID-19 protective measures on the epidemiology characteristics of rotavirus, adenovirus, and coinfections among pediatric patients with acute gastroenteritis in Hangzhou, China Jianming Zhou, Yanhong Sun, Jie Wang
126 [GO] Journal of Virology 2024―Feb―09 Kidney organoids reveal redundancy in viral entry pathways during ACE2-dependent SARS-CoV-2 infection Jessica M. Vanslambrouck, Jessica A. Neil, Rajeev Rudraraju, Sophia Mah, Ker Sin Tan, Ella Groenewegen, et al. (+7)
127 [GO] Microbiology Spectrum 2024―Feb―09 Intranasal SARS-CoV-2 RBD decorated nanoparticle vaccine enhances viral clearance in the Syrian hamster model Devanshi R. Patel, Allen M. Minns, Derek G. Sim, Cassandra J. Field, Abigail E. Kerr, Talia A. Heinly, et al. (+9)
128 [GO] Microbiology Spectrum 2024―Feb―08 Influenza-like illness symptoms due to endemic human coronavirus reinfections are not influenced by the length of the interval separating reinfections Ferdyansyah Sechan, Arthur W. D. Edridge, Jacqueline van Rijswijk, Maarten F. Jebbink, Martin Deijs, Margreet Bakker, et al. (+4)
129 [GO] Microbiology Spectrum 2024―Feb―06 Increased antibody titers but induced T cell AICD and apoptosis response in COVID-19 convalescents by inactivated vaccine booster Jingmin Zhao, Han Zhang, Lina Jiang, Fang Cheng, Wei Li, Zihao Wang, et al. (+13)
130 [GO] Antimicrobial Agents and Chemotherapy 2024―Feb―06 Repurposing screen identifies novel candidates for broad-spectrum coronavirus antivirals and druggable host targets Sibylle Haid, Alina Matthaei, Melina Winkler, Svenja M. Sake, Antonia P. Gunesch, Vanessa Milke, et al. (+17)
131 [GO] Microbiology Spectrum 2024―Feb―06 A photocontrolled one-pot isothermal amplification and CRISPR-Cas12a assay for rapid detection of SARS-CoV-2 Omicron variants Qian Sun, Hongqing Lin, Yuan Li, Liping Yuan, Baisheng Li, Yunan Ma, et al. (+5)
132 [GO] Journal of Clinical Microbiology 2024―Feb―05 Rapid, high-throughput, cost-effective whole-genome sequencing of SARS-CoV-2 using a condensed library preparation of the Illumina DNA Prep kit Rebecca Hickman, Jason Nguyen, Tracy D. Lee, John R. Tyson, Robert Azana, Frankie Tsang, et al. (+3)
133 [GO] Microbiology Spectrum 2024―Feb―05 Spatiotemporal dynamics and epidemiological impact of SARS-CoV-2 XBB lineage dissemination in Brazil in 2023 Ighor Arantes, Marcelo Gomes, Kimihito Ito, Sharbilla Sarafim, Tiago Gräf, Fabio Miyajima, et al. (+8)
134 [GO] mBio 2024―Feb―02 NSP6 inhibits the production of ACE2-containing exosomes to promote SARS-CoV-2 infectivity Xi Lv, Ran Chen, Taizhen Liang, Haojie Peng, Qiannan Fang, Shiqi Xiao, et al. (+14)
135 [GO] Journal of Virology 2024―Feb―02 Structural basis and analysis of hamster ACE2 binding to different SARS-CoV-2 spike RBDs Sheng Niu, Zhennan Zhao, Zhimin Liu, Xiaoyu Rong, Yan Chai, Bin Bai, et al. (+10)
136 [GO] Microbiology Spectrum 2024―Feb―01 Respiratory virus coinfections during the COVID-19 pandemic: epidemiologic analysis and clinical outcomes from the Phase 2/3 molnupiravir trial (MOVe-OUT) Matthew G. Johnson, Julie M. Strizki, Erin Jensen, Jonathan Cohen, Christine Katlama, Roman Fishchuk, et al. (+14)
137 [GO] Journal of Virology 2024―Feb―01 Phospho-eIF4E stimulation regulates coronavirus entry by selective expression of cell membrane-residential factors Xiu-Zhong Zhang, Jing Wang, Wen-Jun Tian, Jing-Ling You, Xiao-Jing Chi, Xiao-Jia Wang, Shan-Lu Liu
138 [GO] Journal of Virology 2024―Feb―01 SARS-CoV-2 spike-FLIPr fusion protein plus lipidated FLIPr protects against various SARS-CoV-2 variants in hamsters Ming-Shu Hsieh, Chia-Wei Hsu, Hung-Chun Liao, Chang-Ling Lin, Chen-Yi Chiang, Mei-Yu Chen, et al. (+4)
139 [GO] Microbiology Spectrum 2024―Feb―01 Swine influenza A virus isolates containing the pandemic H1N1 origin matrix gene elicit greater disease in the murine model Shelly J. Curran, Emily F. Griffin, Lucas M. Ferreri, Constantinos S. Kyriakis, Elizabeth W. Howerth, Daniel R. Perez, et al. (+2)
140 [GO] Antimicrobial Agents and Chemotherapy 2024―Jan―31 Manidipine is not a potential inhibitor against SARS-CoV-2 main protease Rui Zhang, Jiahao Zhou, Haohao Yan, Xiaoping Liu, Chao Shang, Yunyu Chen, Miguel Angel Martinez
141 [GO] Antimicrobial Agents and Chemotherapy 2024―Jan―30 Effectiveness and safety of nirmatrelvir-ritonavir in kidney transplant recipients with severe kidney dysfunction infected with COVID-19 Hui Yang, Xin Yu, Wenjing Hou, Xiangduan Liu, Jiaojiao Chen, Ying Zhang, et al. (+6)
142 [GO] Journal of Virology 2024―Jan―30 Cleavage of HDAC6 to dampen its antiviral activity by nsp5 is a common strategy of swine enteric coronaviruses Zhuang Li, Wenwen Xiao, Zhixiang Yang, Jiahui Guo, Junwei Zhou, Shaobo Xiao, et al. (+3)
143 [GO] Microbiology Spectrum 2024―Jan―30 Development and evaluation of three automated media pooling and molecular diagnostic systems for the detection of SARS-CoV-2 Yasufumi Matsumura, Taro Noguchi, Koh Shinohara, Masaki Yamamoto, Miki Nagao, Paul M. Luethy
144 [GO] Journal of Virology 2024―Jan―30 SARS-CoV-2 and oncolytic EV-D68-encoded proteases differentially regulate pyroptosis Siyu Shen, Haoran Guo, Yan Li, Lili Zhang, Yubin Tang, Huili Li, et al. (+5)
145 [GO] Microbiology Spectrum 2024―Jan―30 Exploring nasopharyngeal microbiota profile in children affected by SARS-CoV-2 infection L. Romani, F. Del Chierico, S. Pane, M. V. Ristori, I. Pirona, V. Guarrasi, et al. (+26)
146 [GO] mBio 2024―Jan―26 The E3 ligase TRIM22 restricts SARS-CoV-2 replication by promoting proteasomal degradation of NSP8 Lujie Fan, Yuzheng Zhou, Xiafei Wei, Wei Feng, Huimin Guo, Yunfei Li, et al. (+9)
147 [GO] mBio 2024―Jan―25 Cross-protective HCoV immunity reduces symptom development during SARS-CoV-2 infection Irene A. Abela, Magdalena Schwarzmüller, Agne Ulyte, Thomas Radtke, Sarah R. Haile, Priska Ammann, et al. (+20)
148 [GO] mBio 2024―Jan―24 CRL4B E3 ligase recruited by PRPF19 inhibits SARS-CoV-2 infection by targeting ORF6 for ubiquitin-dependent degradation Linran Zhang, Pengfei Hao, Xiang Chen, Shuai Lv, Wenying Gao, Chang Li, et al. (+3)
149 [GO] Applied and Environmental Microbiology 2024―Jan―23 The role of ion dissolution in metal and metal oxide surface inactivation of SARS-CoV-2 Jane Hilton, Yoshiko Nanao, Machiel Flokstra, Meisam Askari, Terry K. Smith, Andrea Di Falco, et al. (+4)
150 [GO] Microbiology Spectrum 2024―Jan―22 Erratum for Sazed et al., “Direct Nasal Swab for Rapid Test and Saliva as an Alternative Biological Sample for RT-PCR in COVID-19 Diagnosis” Saiful Arefeen Sazed, Mohammad Golam Kibria, Md Fahad Zamil, Mohammad Sharif Hossain, Jeba Zaman Khan, Rifat Tasnim Juthi, et al. (+5)
151 [GO] Journal of Virology 2024―Jan―18 An RNA replicon system to investigate promising inhibitors of feline coronavirus Kimberly Schmied, Rosina Ehmann, Claudia Kristen-Burmann, Nadine Ebert, Güliz Tuba Barut, Lea Almeida, et al. (+7)
152 [GO] Microbiology Spectrum 2024―Jan―17 Risk factors for SARS-CoV-2 pneumonia among renal transplant recipients in Beijing Omicron wave Guangping Li, Jiangtao Wu, Ying Huang, Qi Wang, Tianying Xing, Tongwen Ou, Anna Moniuszko-Malinowska
153 [GO] Microbiology Spectrum 2024―Jan―17 ACE2 and TMPRSS2 distribution in the respiratory tract of different animal species and its correlation with SARS-CoV-2 tissue tropism Mariano Carossino, Sudeh Izadmehr, Jessie D. Trujillo, Natasha N. Gaudreault, Wellesley Dittmar, Igor Morozov, et al. (+5)
154 [GO] Microbiology Spectrum 2024―Jan―17 Creation of the HIV-1 antisense gene asp coincided with the emergence of the pandemic group M and is associated with faster disease progression Angelo Pavesi, Fabio Romerio, Oliver Laeyendecker
155 [GO] Microbiology Spectrum 2024―Jan―16 Antiviral action of a functionalized plastic surface against human coronaviruses Sailee Shroff, Marjo Haapakoski, Kosti Tapio, Mira Laajala, Miika Leppänen, Zlatka Plavec, et al. (+6)
156 [GO] Journal of Microbiology and Biology Education 2024―Jan―12 Incorporating art into a biology course: a student-curated art exhibition about COVID-19 David R. Wessner, Lia Rose Newman, Marisa J. Pascucci, Nella Tsudis, Laura J. MacDonald
157 [GO] Microbiology Spectrum 2024―Jan―12 Risk factors for recognized and unrecognized SARS-CoV-2 infection: a seroepidemiologic analysis of the Prospective Urban Rural Epidemiology (PURE) study Darryl P. Leong, Mark Loeb, Prem K. Mony, Sumathy Rangarajan, Maha Mushtaha, Matthew S. Miller, et al. (+18)
158 [GO] Journal of Virology 2024―Jan―11 Harnessing preexisting influenza virus-specific immunity increases antibody responses against SARS-CoV-2 Harrison Dulin, Ramya S. Barre, Duo Xu, Arrmund Neal, Edward Vizcarra, Jerald Chavez, et al. (+10)
159 [GO] Microbiology Spectrum 2024―Jan―11 Comparison of analytical performance and economic value of two biosurveillance methods for tracking SARS-COV-2 variants of concern Nicholas P. Pinkhover, Kerriann M. Pontbriand, Kelli P. Fletcher, Eduardo Sanchez, Kenneth Okello, Liam M. Garvey, et al. (+9)
160 [GO] Journal of Virology 2024―Jan―10 Gut microbiota-derived butyrate promotes coronavirus TGEV infection through impairing RIG-I-triggered local type I interferon responses via class I HDAC inhibition Lingdan Yin, Xiang Liu, Yao Yao, Mengqi Yuan, Yi Luo, Guozhong Zhang, et al. (+3)
161 [GO] Microbiology Spectrum 2024―Jan―10 Analysis of SARS-CoV-2 genome evolutionary patterns Shubhangi Gupta, Deepanshu Gupta, Sonika Bhatnagar, Cyprian C. Rossetto
162 [GO] Microbiology Spectrum 2024―Jan―10 SARS-CoV-2 viral dynamics in a placebo-controlled phase 2 study of patients infected with the SARS-CoV-2 Omicron variant and treated with pomotrelvir Katyna Borroto-Esoda, David Wilfret, Xiao Tong, Andrew Plummer, Brian Kearney, Ann D. Kwong, Anne Piantadosi
163 [GO] Microbiology Spectrum 2024―Jan―09 Effect of nasal carriage of Bacillus species on COVID-19 severity: a cross-sectional study Muinah A. Fowora, Adenike Aiyedogbon, Ibilola Omolopo, Ahmed O. Tajudeen, Abdul-Lateef Olanlege, Adefunke Abioye, et al. (+3)
164 [GO] Microbiology Spectrum 2024―Jan―09 Optimization of the STARlet workflow for semi-automatic SARS-CoV-2 screening of swabs and deep respiratory materials using the RealAccurate Quadruplex SARS-CoV-2 PCR kit and Allplex SARS-CoV-2 PCR kit Jacky Flipse, Angelino T. Tromp, Danique Thijssen, Nicole van Xanten-Jans-Beken, Roy Pauwelsen, Harmen J. van der Veer, et al. (+3)
165 [GO] mBio 2024―Jan―09 Surface-modified measles vaccines encoding oligomeric, prefusion-stabilized SARS-CoV-2 spike glycoproteins boost neutralizing antibody responses to Omicron and historical variants, independent of measles seropositivity Miguel Á. Muñoz-Alía, Rebecca A. Nace, Baskar Balakrishnan, Lianwen Zhang, Nandakumar Packiriswamy, Gagandeep Singh, et al. (+9)
166 [GO] mBio 2024―Jan―09 SARS-CoV-2 spike glycosylation affects function and neutralization sensitivity Fengwen Zhang, Fabian Schmidt, Frauke Muecksch, Zijun Wang, Anna Gazumyan, Michel C. Nussenzweig, et al. (+5)
167 [GO] Microbiology Spectrum 2024―Jan―08 Assessment of the clinical and analytical performance of three Seegene Allplex SARS-CoV-2 assays within the VALCOR framework Pui Yan Jenny Chung, Sharonjit K. Dhillon, Cindy Simoens, Lize Cuypers, Lies Laenen, Jesper Bonde, et al. (+7)
168 [GO] Microbiology Spectrum 2024―Jan―08 Recurrent SARS-CoV-2 mutations at Spike D796 evade antibodies from pre-Omicron convalescent and vaccinated subjects Evan A. Elko, Heather L. Mead, Georgia A. Nelson, John A. Zaia, Jason T. Ladner, John A. Altin, Luciana Jesus Costa
169 [GO] Microbiology Spectrum 2024―Jan―08 Genome-wide bioinformatics analysis of human protease capacity for proteolytic cleavage of the SARS-CoV-2 spike glycoprotein Evgenii V. Matveev, Gennady V. Ponomarev, Marat D. Kazanov, Takamasa Ueno
170 [GO] Microbiology Spectrum 2024―Jan―08 How do deer respiratory epithelial cells weather the initial storm of SARS-CoV-2 WA1/2020 strain? Kaitlyn M. Sarlo Davila, Rahul K. Nelli, Kruttika S. Phadke, Rachel M. Ruden, Yongming Sang, Bryan H. Bellaire, et al. (+3)
171 [GO] Journal of Virology 2024―Jan―05 Porcine reproductive and respiratory syndrome virus triggers Golgi apparatus fragmentation-mediated autophagy to facilitate viral self-replication Shuang-shuang Zhao, Qisheng Qian, Xin-xin Chen, Qingxia Lu, Guangxu Xing, Songlin Qiao, et al. (+3)
172 [GO] Journal of Virology 2024―Jan―04 Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection Mireille Farjo, Katia Koelle, Michael A. Martin, Laura L. Gibson, Kimberly K. O. Walden, Gloria Rendon, et al. (+11)
173 [GO] Journal of Virology 2024―Jan―03 Adaptation of SARS-CoV-2 to ACE2 H353K mice reveals new spike residues that drive mouse infection Kun Li, Abhishek Verma, Pengfei Li, Miguel E. Ortiz, Grant M. Hawkins, Nicholas J. Schnicker, et al. (+9)
174 [GO] Journal of Clinical Microbiology 2023―Dec―22 Retrospective evaluation of clinical decision support for within-laboratory optimization of SARS-CoV-2 NAAT workflow Thomas J. S. Durant, David R. Peaper, Alexander J. McAdam
175 [GO] Journal of Clinical Microbiology 2023―Dec―22 Tiny swabs: nasal swabs integrated into tube caps facilitate large-scale self-collected SARS-CoV-2 testing Brian Pfau, Jordan Opsahl, Ruben Crew, Sabrina Best, Peter D. Han, Sarah Heidl, et al. (+26)
176 [GO] mBio 2023―Dec―21 Potent 3CLpro inhibitors effective against SARS-CoV-2 and MERS-CoV in animal models by therapeutic treatment Pengfei Li, Yunjeong Kim, Chamandi S. Dampalla, Harry Nhat Nguyen, David K. Meyerholz, David K. Johnson, et al. (+6)
177 [GO] mBio 2023―Dec―19 Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency Kaiyuan Shi, Linjie Li, Chunliang Luo, Zepeng Xu, Baihan Huang, Sufang Ma, et al. (+4)
178 [GO] Antimicrobial Agents and Chemotherapy 2023―Dec―15 Phase I study, and dosing regimen selection for a pivotal COVID-19 trial of GST-HG171 Hong Zhang, Jing Zhou, Hong Chen, John Mao, Yanan Tang, Wenhao Yan, et al. (+8)
179 [GO] Journal of Virology 2023―Dec―15 DYRK1A is a multifunctional host factor that regulates coronavirus replication in a kinase-independent manner Zhen Fu, Yixin Xiang, Yanan Fu, Zhelin Su, Yubei Tan, Mengfang Yang, et al. (+7)
180 [GO] Clinical Microbiology Reviews 2023―Dec―14 Wastewater-based surveillance as a tool for public health action: SARS-CoV-2 and beyond Michael D. Parkins, Bonita E. Lee, Nicole Acosta, Maria Bautista, Casey R. J. Hubert, Steve E. Hrudey, et al. (+3)
181 [GO] mSystems 2023―Dec―14 The most exposed regions of SARS-CoV-2 structural proteins are subject to strong positive selection and gene overlap may locally modify this behavior Alejandro Rubio, Maria de Toro, Antonio J. Pérez-Pulido, Irina El Khoury
182 [GO] Microbiology Spectrum 2023―Dec―13 Lymphocyte and neutrophil count combined with intestinal bacteria abundance predict the severity of COVID-19 Liuying Chen, Zhongwei Yin, Dan Zhou, Xin Li, Cheng Yu, Chang Luo, et al. (+10)
183 [GO] Journal of Virology 2023―Dec―13 Evolutionary deletions within the SARS-CoV-2 genome as signature trends for virus fitness and adaptation Pedro Miguel Carneiro Jeronimo, Cleber Furtado Aksenen, Igor Oliveira Duarte, Roberto D. Lins, Fabio Miyajima, Suchetana Mukhopadhyay
184 [GO] Journal of Virology 2023―Dec―13 High fusion and cytopathy of SARS-CoV-2 variant B.1.640.1 William Bolland, Vincent Michel, Delphine Planas, Mathieu Hubert, Isabelle Staropoli, Florence Guivel-Benhassine, et al. (+15)
185 [GO] Microbiology Spectrum 2023―Dec―12 Targeted amplification and genetic sequencing of the severe acute respiratory syndrome coronavirus 2 surface glycoprotein Matthew W. Keller, Lisa M. Keong, Benjamin L. Rambo-Martin, Norman Hassell, Kristine A. Lacek, Malania M. Wilson, et al. (+10)
186 [GO] Journal of Virology 2023―Dec―12 A nanobody inhibiting porcine reproductive and respiratory syndrome virus replication via blocking self-interaction of viral nucleocapsid protein Hong Duan, Xu Chen, Ziwei Zhang, Zhijie Zhang, Zhihan Li, Xinjie Wang, et al. (+7)
187 [GO] mBio 2023―Dec―11 Endoplasmic reticulum-associated SARS-CoV-2 ORF3a elicits heightened cytopathic effects despite robust ER-associated degradation Jiantao Zhang, Ruth Cruz-Cosme, Chenyu Zhang, Dongxiao Liu, Qiyi Tang, Richard Y. Zhao, Diane E. Griffin
188 [GO] mBio 2023―Dec―11 The American Academy of Microbiology discusses gain-of-function research of concern (GOFROC) and enhanced potential pandemic pathogens (ePPP) Arturo Casadevall, Michael J. Imperiale, Nguyen K. Nguyen, Vanessa Sperandio
189 [GO] Microbiology Spectrum 2023―Dec―07 Erratum for Liu et al., “Ubiquitination of SARS-CoV-2 ORF7a Prevents Cell Death Induced by Recruiting BclXL To Activate ER Stress” Zhixin Liu, Yanan Fu, Yanping Huang, Feng Zeng, Jingjing Rao, Xiao Xiao, et al. (+6)
190 [GO] Microbiology Spectrum 2023―Dec―07 Genetic features of antimicrobial drug-susceptible extraintestinal pathogenic Escherichia coli pandemic sequence type 95 Yuan Hu Allegretti, Reina Yamaji, Sheila Adams-Sapper, Lee W. Riley, Neelam Taneja
191 [GO] mBio 2023―Dec―06 An in vitro experimental pipeline to characterize the epitope of a SARS-CoV-2 neutralizing antibody Kristina E. Atanasoff, Luca Brambilla, Daniel C. Adelsberg, Shreyas Kowdle, Christian S. Stevens, Stefan Slamanig, et al. (+11)
192 [GO] Journal of Virology 2023―Dec―05 SARS-CoV-2 exploits cellular RAD51 to promote viral propagation: implication of RAD51 inhibitor as a potential drug candidate against COVID-19 Thuy X. Pham, Trang T. X. Huynh, Jiwon Choi, Jae-Bong Lee, Seok-Chan Park, Bumseok Kim, et al. (+3)
193 [GO] Microbiology Spectrum 2023―Dec―05 Epidemiological characteristics of respiratory viruses in children during the COVID-19 epidemic in Chengdu, China Zheng-Xiang Gao, Ya Wang, Ling-Yi Yan, Ting Liu, Lei-Wen Peng, Tulip A. Jhaveri
194 [GO] Antimicrobial Agents and Chemotherapy 2023―Dec―04 Molnupiravir maintains antiviral activity against SARS-CoV-2 variants and exhibits a high barrier to the development of resistance Julie M. Strizki, John M. Gaspar, John A. Howe, Beth Hutchins, Hiroshi Mohri, Manoj S. Nair, et al. (+5)
195 [GO] mBio 2023―Dec―04 The glycoprotein 5 of porcine reproductive and respiratory syndrome virus stimulates mitochondrial ROS to facilitate viral replication Shuang Zhang, Lei Zeng, Bing-Qian Su, Guo-Yu Yang, Jiang Wang, Sheng-Li Ming, et al. (+2)
196 [GO] Journal of Virology 2023―Dec―01 A multi-epitope/CXCL11 prime/pull coronavirus mucosal vaccine boosts the frequency and the function of lung-resident memory CD4 + and CD8 + T cells and enhanced protection against COVID-19-like symptoms and death caused by SARS-CoV-2 infection Latifa Zayou, Swayam Prakash, Nisha Rajeswari Dhanushkodi, Afshana Quadiri, Izabela Coimbra Ibraim, Mahmoud Singer, et al. (+14)
197 [GO] Journal of Virology 2023―Dec―01 Amino acid substitution L232F in non-structural protein 6 identified as a possible human-adaptive mutation in clade B MERS coronaviruses Ray T. Y. So, Daniel K. W. Chu, Kenrie P. Y. Hui, Chris K. P. Mok, Marcus H. H. Shum, Sumana Sanyal, et al. (+11)
198 [GO] mBio 2023―Dec―01 Mucosal antibody responses to SARS-CoV-2 booster vaccination and breakthrough infection Disha Bhavsar, Gagandeep Singh, Kaori Sano, Charles Gleason, Komal Srivastava, Juan Manuel Carreno, et al. (+23)
199 [GO] mBio 2023―Nov―29 Diversity of short linear interaction motifs in SARS-CoV-2 nucleocapsid protein Peter Schuck, Huaying Zhao, Nihal Altan-Bonnet
200 [GO] Journal of Virology 2023―Nov―29 Cryptic-site-specific antibodies to the SARS-CoV-2 receptor binding domain can retain functional binding affinity to spike variants Kan Li, Richard H. C. Huntwork, Gillian Q. Horn, Milite Abraha, Kathryn M. Hastie, Haoyang Li, et al. (+14)
201 [GO] Microbiology Spectrum 2023―Nov―29 Comprehensive, comparative evaluation of 25 automated SARS-CoV-2 serology assays Wayne Dimech, Shannon Curley, Jing Jing Cai, Oliver Laeyendecker
202 [GO] Microbiology Spectrum 2023―Nov―28 SalivaDirect: an alternative to a conventional RNA extraction protocol for molecular detection of SARS-CoV-2 in a clinical setting Mohammad Khaja Mafij Uddin, Mohammad Enayet Hossain, Jenifar Quaiyum Ami, Rashedul Hasan, Md. Mahmudul Hasan, Ashabul Islam, et al. (+8)
203 [GO] Microbiology Spectrum 2023―Nov―27 COVID-19 convalescent plasma therapy decreases inflammatory cytokines: a randomized controlled trial Feben Habtehyimer, Xianming Zhu, Andrew D. Redd, Kelly A. Gebo, Alison G. Abraham, Eshan U. Patel, et al. (+42)
204 [GO] Microbiology Spectrum 2023―Nov―27 Establishment of a screening platform based on human coronavirus OC43 for the identification of microbial natural products with antiviral activity Blanca Martínez-Arribas, Frederick Annang, Rosario Díaz-González, Guiomar Pérez-Moreno, Jesús Martín, Thomas A. Mackenzie, et al. (+8)
205 [GO] Microbiology Spectrum 2023―Nov―27 Spatiotemporal analysis of SARS-CoV-2 infection reveals an expansive wave of monocyte-derived macrophages associated with vascular damage and virus clearance in hamster lungs Ola Bagato, Anne Balkema-Buschmann, Daniel Todt, Saskia Weber, André Gömer, Bingqian Qu, et al. (+8)
206 [GO] Journal of Virology 2023―Nov―21 Puzzles, challenges, and information reservoir of SARS-CoV-2 quasispecies Esteban Domingo, Brenda Martínez-González, Carlos García-Crespo, Pilar Somovilla, Ana Isabel de Ávila, María Eugenia Soria, et al. (+3)
207 [GO] Applied and Environmental Microbiology 2023―Nov―20 In vitro digestion of SARS-CoV-2 contaminated berries reveals high inactivation of infectious virus during gastrointestinal passage Malak A. Esseili, Christopher A. Elkins
208 [GO] Microbiology Spectrum 2023―Nov―20 Longitudinal monitoring of SARS-CoV-2 viral load in self-collected saliva from health care workers during breakthrough infections to spare working days Valeria Caneparo, Carmela Rinaldi, Daniela Ferrante, Paolo Ravanini, Irene Lo Cigno, Silvia Cavalieri, et al. (+3)
209 [GO] Microbiology Spectrum 2023―Nov―17 Efficacy of combined COVID-19 convalescent plasma with oral RNA-dependent RNA polymerase inhibitor treatment versus neutralizing monoclonal antibody therapy in COVID-19 outpatients: a multi-center, non-inferiority, open-label randomized controlled trial (PlasMab) Taweegrit Siripongboonsitti, Nuttakant Nontawong, Kriangkrai Tawinprai, Ornpreya Suptawiwat, Kamonwan Soonklang, Yong Poovorawan, et al. (+2)
210 [GO] Microbiology Spectrum 2023―Nov―17 The impact of the COVID-19 pandemic on blood culture practices and bloodstream infections Matt Driedger, Nick Daneman, Kevin Brown, Wayne L. Gold, Sarah C.J. Jorgensen, Colleen Maxwell, et al. (+7)
211 [GO] Journal of Virology 2023―Nov―17 Type I interferon signaling induces a delayed antiproliferative response in respiratory epithelial cells during SARS-CoV-2 infection Juliana Bragazzi Cunha, Kyle Leix, Emily J. Sherman, Carmen Mirabelli, Tristan Frum, Charles J. Zhang, et al. (+8)
212 [GO] Microbiology Spectrum 2023―Nov―16 Cytomegalovirus-vectored COVID-19 vaccines elicit neutralizing antibodies against the SARS-CoV-2 Omicron variant (BA.2) in mice Jian Liu, Dabbu Kumar Jaijyan, Yanling Chen, Changcan Feng, Shaomin Yang, Zhenglong Xu, et al. (+6)
213 [GO] Microbiology Spectrum 2023―Nov―15 Classification of patients with COVID-19 by blood RNA endotype: a prospective cohort study Jumpei Yoshimura, Yuki Togami, Takeshi Ebihara, Hisatake Matsumoto, Yumi Mitsuyama, Fuminori Sugihara, et al. (+4)
214 [GO] Journal of Microbiology and Biology Education 2023―Nov―15 Pete and the Missing Scissors: a primary literature-focused case study that highlights the impact of SARS-CoV-2 on splicing Meagan Harrington, April Lane, Caroline Yencha, Kiran Kelly-Rajan, Laura E. Ott, Nancy Maroushek Boury
215 [GO] Microbiology Spectrum 2023―Nov―15 Immune targets to stop future SARS-CoV-2 variants Milena Silva Souza, Jéssica Pires Farias, Wilson Barros Luiz, Alexander Birbrair, Ricardo Durães-Carvalho, Luís Carlos de Souza Ferreira, et al. (+2)
216 [GO] Microbiology Spectrum 2023―Nov―14 Real-world evaluation of the Lucira Check-It COVID-19 loop-mediated amplification (LAMP) test Elizabeth Simms, Gregory R. McCracken, Todd F. Hatchette, Shelly A. McNeil, Ian Davis, Noella Whelan, et al. (+4)
217 [GO] mBio 2023―Nov―10 Correction for Castaño-Rodriguez et al., “Role of Severe Acute Respiratory Syndrome Coronavirus Viroporins E, 3a, and 8a in Replication and Pathogenesis” Carlos Castaño-Rodríguez, Jose M. Honrubia, Javier Gutierrez-Álvarez, Marta L. DeDiego, Jose L. Nieto-Torres, Jose M. Jimenez-Guardeño, et al. (+9)
218 [GO] Microbiology Spectrum 2023―Nov―09 Evolution of SARS-CoV-2 Spikes shapes their binding affinities to animal ACE2 orthologs Weitong Yao, Yujun Li, Danting Ma, Xudong Hou, Haimin Wang, Xiaojuan Tang, et al. (+12)
219 [GO] Microbiology Spectrum 2023―Nov―09 Development and evaluation of the automated multipurpose molecular testing system PCRpack for high-throughput SARS-CoV-2 testing Yasufumi Matsumura, Tomofumi Nakazaki, Kanako Kitamori, Eiki Kure, Koh Shinohara, Yasuhiro Tsuchido, et al. (+5)
220 [GO] mBio 2023―Nov―08 Seasonality of endemic COVID-19 Jeffrey P. Townsend, Hayley B. Hassler, April D. Lamb, Pratha Sah, Aia Alvarez Nishio, Cameron Nguyen, et al. (+4)
221 [GO] mBio 2023―Nov―08 Factors associated with mortality among hospitalized patients with COVID-19 disease treated with convalescent plasma Armando M. Perichon, Andrea Acosta, Liliana Di Tulio, Maria José Munuce, Stella Pezzotto, Oscar Bottasso, et al. (+2)
222 [GO] Microbiology Spectrum 2023―Nov―08 Assessing airborne transmission risks in COVID-19 hospitals by systematically monitoring SARS-CoV-2 in the air Shanglin Li, Jiazhen Guo, Yin Gu, Yan Meng, Ming He, Shangzhi Yang, et al. (+7)
223 [GO] Microbiology Spectrum 2023―Nov―08 Spatiotemporal observations of host-pathogen interactions in mucosa during SARS-CoV-2 infection indicate a protective role of ILC2s Wei Hu, Lu Meng, Chao Wang, Wenhan Lu, Xiaoyu Tong, Rui Lin, et al. (+18)
224 [GO] Journal of Virology 2023―Nov―06 SARS-CoV-2 NSP12 associates with TRiC and the P323L substitution acts as a host adaption Muhannad Alruwaili, Stuart Armstrong, Tessa Prince, Maximillian Erdmann, David A. Matthews, Lisa Luu, et al. (+4)
225 [GO] Microbiology Spectrum 2023―Nov―01 Global genomic diversity and conservation of SARS-CoV-2 since the COVID-19 outbreak Heng Li, Liping Ding, Rui Liao, Nini Li, Xiaoping Hong, Zhenyou Jiang, et al. (+2)
226 [GO] Microbiology Spectrum 2023―Nov―01 The fourth COVID-19 vaccine dose increased the neutralizing antibody response against the SARS-CoV-2 Omicron (B.1.1.529) variant in a diverse Brazilian population Jéssica Pires Farias, Robert Andreata-Santos, Ruth Dalety da Silva Brito, Milena Silva Souza, Mayanna Moreira Costa Fogaça, Josilene Ramos Pinheiro, et al. (+12)
227 [GO] Microbiology Spectrum 2023―Nov―01 Performance evaluation of the cobas SARS-CoV-2 Duo, a novel qualitative and quantitative assay, for the detection of SARS-CoV-2 RNA Yang-Di Su, Chih-Cheng Lai, Tsai-Hsiu Lin, Wei-Cheng Chen, Po-Ren Hsueh, Ana Cabrera
228 [GO] Microbiology Spectrum 2023―Nov―01 Enhanced immunogenicity elicited by a novel DNA vaccine encoding the SARS-CoV-2 S1 protein fused to the optimized flagellin of Salmonella typhimurium in mice Li Song, Qiaoju Wang, Yaya Wen, Ruimeng Tan, Yaodan Cui, Dan Xiong, et al. (+3)
229 [GO] Microbiology Spectrum 2023―Oct―31 Upper respiratory tract microbiome profiles in SARS-CoV-2 Delta and Omicron infected patients exhibit variant specific patterns and robust prediction of disease groups Shankha Nath, Mousumi Sarkar, Ankita Maddheshiya, Debjit De, Shouvik Paul, Souradeep Dey, et al. (+9)
230 [GO] Journal of Virology 2023―Oct―31 Identification of host dependency factors involved in SARS-CoV-2 replication organelle formation through proteomics and ultrastructural analysis Felix Pahmeier, Teresa-Maria Lavacca, Sarah Goellner, Christopher J. Neufeldt, Vibhu Prasad, Berati Cerikan, et al. (+8)
231 [GO] Applied and Environmental Microbiology 2023―Oct―30 Persistence of SARS-CoV-2 and its surrogate, bacteriophage Phi6, on surfaces and in water Ana K. Pitol, Samiksha Venkatesan, Michael Hoptroff, Grant L. Hughes, Christopher A. Elkins
232 [GO] Journal of Clinical Microbiology 2023―Oct―30 Multi-center clinical evaluation of the Panther Fusion SARS-CoV-2/Flu A/B/RSV assay in nasopharyngeal swab specimens from symptomatic individuals Anjana Sasidharan, Rangaraj Selvarangan, Kennah Konrad, Matthew L. Faron, Salika M. Shakir, David Hillyard, et al. (+9)
233 [GO] Microbiology Spectrum 2023―Oct―26 Characteristics of respiratory viruses’ circulation through a six-year period (2016-2022) in a pediatric population in Normandy, France, and the impact of COVID-19 pandemic J. Dina, A. Moisan, P. Thibon, C. Creveuil, J. Adnet, A. Vabret, et al. (+3)
234 [GO] Microbiology Spectrum 2023―Oct―26 Design and validation of an exposure system for efficient inter-animal SARS-CoV-2 airborne transmission in Syrian hamsters Philip J. Kuehl, Justin Dearing, Adam Werts, Jason Cox, Hammad Irshad, Edward G. Barrett, et al. (+3)
235 [GO] mSphere 2023―Oct―26 Genomic epidemiology reveals the dominance of Hennepin County in the transmission of SARS-CoV-2 in Minnesota from 2020 to 2022 Matthew Scotch, Kimberly Lauer, Eric D. Wieben, Yesesri Cherukuri, Julie M. Cunningham, Eric W. Klee, et al. (+15)
236 [GO] mBio 2023―Oct―26 Contrasting roles of MERS-CoV and SARS-CoV-2 internal proteins in pathogenesis in mice Lok-Yin Roy Wong, Abby Odle, Emma Luhmann, Douglas C. Wu, Yiquan Wang, Qi Wen Teo, et al. (+10)
237 [GO] Microbiology Spectrum 2023―Oct―26 Erratum for Fernandez-Pittol et al., “Assessment of QuantuMDx Q-POC Assay for Rapid Detection of SARS-CoV-2 Using Middle Turbinate Swabs” Mariana Fernandez-Pittol, Juan Carlos Hurtado, Maryam Ali, Álvar Simarro, Fadiana Prodaño, Maria Sierra, Jordi Vila
238 [GO] mBio 2023―Oct―26 An account of American Academy of Microbiology reforms and pandemic operations Arturo Casadevall, Peggy A. Cotter, Lynn Enquist, Timothy J. Donohue, Stefano Bertuzzi, Nguyen K. Nguyen
239 [GO] Microbiology Spectrum 2023―Oct―25 A novel simian adenovirus-vectored COVID-19 vaccine elicits effective mucosal and systemic immunity in mice by intranasal and intramuscular vaccination regimens Panli Zhang, Shengxue Luo, Peng Zou, Qitao Deng, Cong Wang, Jinfeng Li, et al. (+5)
240 [GO] Journal of Microbiology and Biology Education 2023―Oct―25 Developing scientific literacy with a cyclic independent study assisted CURE detecting SARS-CoV-2 in wastewater Kristine Dye, Lourdes Norman-McKay
241 [GO] mSystems 2023―Oct―24 Methylprednisolone therapy induces differential metabolic trajectories in severe COVID-19 patients Victor I. Mwangi, Rebeca L. A. Netto, Mayla G. S. Borba, Gabriel F. Santos, Gesiane S. Lima, Lucas S. Machado, et al. (+15)
242 [GO] Microbiology Spectrum 2023―Oct―20 Swish and gargle saliva sampling is a patient-friendly and comparable alternative to nasopharyngeal swabs to detect SARS-CoV-2 in outpatient settings for adults and children Sandra Isabel, Justine Cohen-Silver, Hyejung Jung, Bridget Tam, Maya Lota, Marcia Sivilotti, et al. (+6)
243 [GO] Journal of Virology 2023―Oct―20 Mutations in S2 subunit of SARS-CoV-2 Omicron spike strongly influence its conformation, fusogenicity, and neutralization sensitivity Sahil Kumar, Rathina Delipan, Debajyoti Chakraborty, Kawkab Kanjo, Randhir Singh, Nittu Singh, et al. (+8)
244 [GO] Journal of Virology 2023―Oct―20 Blocking of doublecortin-like kinase 1-regulated SARS-CoV-2 replication cycle restores cell signaling network Ram Babu Undi, Nagib Ahsan, Jason L. Larabee, Nicole Darlene-Reuter, James Papin, Samrita Dogra, et al. (+6)
245 [GO] Journal of Virology 2023―Oct―19 Discovery of Nanosota-2, -3, and -4 as super potent and broad-spectrum therapeutic nanobody candidates against COVID-19 Gang Ye, Ruangang Pan, Fan Bu, Jian Zheng, Alise Mendoza, Wei Wen, et al. (+7)
246 [GO] Microbiology Spectrum 2023―Oct―19 Integrating SARS-CoV-2-specific interferon-γ release assay testing in the evaluation of patients hospitalized with COVID-19 Mar Masiá, Alba de la Rica, Marta Fernández-González, José Alberto García, Sergio Padilla, Javier García-Abellán, et al. (+4)
247 [GO] Journal of Virology 2023―Oct―17 Diet-induced obesity and diabetes enhance mortality and reduce vaccine efficacy for SARS-CoV-2 Robert M. Johnson, Jeremy Ardanuy, Holly Hammond, James Logue, Lian Jackson, Lauren Baracco, et al. (+6)
248 [GO] Journal of Virology 2023―Oct―16 DHA and EPA inhibit porcine coronavirus replication by alleviating ER stress Xiaoyi Suo, Jing Wang, Danping Wang, Guoqiang Fan, Mingjun Zhu, Baochao Fan, et al. (+3)
249 [GO] Journal of Virology 2023―Oct―16 Protection of the receptor binding domain (RBD) dimer against SARS-CoV-2 and its variants Yan Wu, Jian Shi, Xiaoxue He, Jia Lu, Xiao Gao, Xuerui Zhu, et al. (+9)
250 [GO] Journal of Virology 2023―Oct―16 Correction for Gao et al., “When Poly(A) Binding Proteins Meet Viral Infections, Including SARS-CoV-2” Jie Gao, Yan-Dong Tang, Wei Hu, Chunfu Zheng
251 [GO] Journal of Virology 2023―Oct―13 SARS-CoV-2 replicates in the human testis with slow kinetics and has no major deleterious effects ex vivo Dominique Mahé, Salomé Bourgeau, Janaina da Silva, Julie Schlederer, Anne-Pascale Satie, Nadège Kuassivi, et al. (+8)
252 [GO] mBio 2023―Oct―13 Tetravalent SARS-CoV-2 S1 subunit protein vaccination elicits robust humoral and cellular immune responses in SIV-infected rhesus macaque controllers Muhammad S. Khan, Eun Kim, Quentin Le Hingrat, Adam Kleinman, Alessandro Ferrari, Jose C. Sammartino, et al. (+10)
253 [GO] Journal of Virology 2023―Oct―13 Distinct motifs in the E protein are required for SARS-CoV-2 virus particle formation and lysosomal deacidification in host cells Koya Miura, Youichi Suzuki, Kotaro Ishida, Masashi Arakawa, Hong Wu, Yoshihiko Fujioka, et al. (+8)
254 [GO] Microbiology Spectrum 2023―Oct―13 Improved detection of infection with SARS-CoV-2 Omicron variants of concern in healthcare workers by a second-generation rapid antigen test Jochen M. Wettengel, Katharina Strehle, Catharina von Lucke, Hedwig Roggendorf, Samuel D. Jeske, Catharina Christa, et al. (+5)
255 [GO] Microbiology Spectrum 2023―Oct―11 Protective efficacy of a candidate live attenuated vaccine derived from the SD-R strain of lineage 1 porcine reproductive and respiratory syndrome virus against a lethal challenge with HP-PRRSV HuN4 in piglets Hongliang Zhang, Chao Li, Hu Xu, Bangjun Gong, Wansheng Li, Zhenyang Guo, et al. (+11)
256 [GO] Microbiology Spectrum 2023―Oct―10 Neglected SARS-CoV-2 variants and potential concerns for molecular diagnostics: a framework for nucleic acid amplification test target site quality assurance Gregory R. McCracken, Daniel Gaston, Janice Pettipas, Allana Loder, Anna Majer, Elsie Grudeski, et al. (+5)
257 [GO] Microbiology Spectrum 2023―Oct―09 The impact of early anti-SARS-CoV-2 antibody production on the length of hospitalization stay among COVID-19 patients Dalziza Victalina de Almeida, Priscila Alves Cezar, Thais Freitas Barreto Fernandes, Marcos Gustavo Araujo Schwarz, Leila Mendonça-Lima, Carmem Beatriz Wagner Giacoia-Gripp, et al. (+16)
258 [GO] Microbiology Spectrum 2023―Oct―09 Inference and forecasting phase shift regime of COVID-19 sub-lineages with a Markov-switching model Eul Noh, Jinwook Hong, Joonkyung Yoo, Jaehun Jung, Miguel Angel Martinez
259 [GO] Microbiology Spectrum 2023―Oct―09 Hundred-fold increase in SARS-CoV-2 spike antibody levels over three years in a hospital clinical laboratory Patrizio Caturegli, Oliver Laeyendecker, Aaron A. R. Tobian, David J. Sullivan, Bar-On Yotam
260 [GO] Microbiology Spectrum 2023―Oct―09 Integration of SARS-CoV-2 testing and genomic sequencing into influenza sentinel surveillance in Uganda, January to December 2022 John T. Kayiwa, Charity Nassuna, Sophia Mulei, Gladys Kiggundu, Joweria Nakaseegu, Maria Nabbuto, et al. (+17)
261 [GO] Antimicrobial Agents and Chemotherapy 2023―Oct―06 Evaluation of in vitro antiviral activity of SARS-CoV-2 M pro inhibitor pomotrelvir and cross-resistance to nirmatrelvir resistance substitutions Xiao Tong, Walter Keung, Lee D. Arnold, Laura J. Stevens, Andrea J. Pruijssers, Seunghyi Kook, et al. (+4)
262 [GO] Microbiology Spectrum 2023―Oct―06 Evolutionary and spatiotemporal analyses reveal multiple introductions and cryptic transmission of SARS-CoV-2 VOC/VOI in Malta Nidia S. Trovao, Vincent Pan, Chirag Goel, Pilar Gallego-García, Yunxi Liu, Christopher Barbara, et al. (+11)
263 [GO] Journal of Virology 2023―Oct―05 Multiple mutations of SARS-CoV-2 Omicron BA.2 variant orchestrate its virological characteristics Izumi Kimura, Daichi Yamasoba, Hesham Nasser, Hayato Ito, Jiri Zahradnik, Jiaqi Wu, et al. (+80)
264 [GO] Microbiology Spectrum 2023―Oct―04 Rapid and sensitive on-site detection of SARS-CoV-2 RNA from environmental surfaces using portable laboratory devices Kouichi Kitamura, Minami Kikuchi Ueno, Hiromu Yoshida, Rebekah M. Martin
265 [GO] Journal of Virology 2023―Sep―29 N-linked glycoproteins and host proteases are involved in swine acute diarrhea syndrome coronavirus entry Ying Chen, Xi Liu, Jiang-Nan Zheng, Li-Jun Yang, Yun Luo, Yu-Lin Yao, et al. (+9)
266 [GO] Journal of Virology 2023―Sep―29 EGR1 functions as a new host restriction factor for SARS-CoV-2 to inhibit virus replication through the E3 ubiquitin ligase MARCH8 Yinghua Zhao, Liyan Sui, Ping Wu, Letian Li, Li Liu, Baohua Ma, et al. (+13)
267 [GO] Journal of Virology 2023―Sep―28 The REEP5/TRAM1 complex binds SARS-CoV-2 NSP3 and promotes virus replication Jie Li, Qi Gui, Feng-Xia Liang, Joseph Sall, Qingyue Zhang, Yatong Duan, et al. (+6)
268 [GO] Microbiology Spectrum 2023―Sep―26 Longitudinal kinetics of neutralizing antibodies against circulating SARS-CoV-2 variants and estimated level of group immunity of booster-vaccinated individuals during omicron-dominated COVID-19 outbreaks in the Republic of Korea, 2022 Young Jae Lee, Ju-yeon Choi, Jinyoung Yang, Jin Yang Baek, Hye-Jin Kim, Su-Hwan Kim, et al. (+14)
269 [GO] Microbiology Spectrum 2023―Sep―22 Tonsils are major sites of persistence of SARS-CoV-2 in children Thais Melquiades de Lima, Ronaldo Bragança Martins, Carolina Sponchiado Miura, Maria Vitória Oliveira Souza, Murilo Henrique Anzolini Cassiano, Tamara Silva Rodrigues, et al. (+19)
270 [GO] Microbiology Spectrum 2023―Sep―22 Distinguishing SARS-CoV-2 infection and vaccine responses up to 18 months post-infection using nucleocapsid protein and receptor-binding domain antibodies Ida Jarlhelt, Laura Pérez-Alós, Rafael Bayarri-Olmos, Cecilie Bo Hansen, Maria Skaalum Petersen, Pál Weihe, et al. (+9)
271 [GO] mSphere 2023―Sep―22 Cell-intrinsic and -extrinsic effects of SARS-CoV-2 RNA on pathogenesis: single-cell meta-analysis Mst Shamima Khatun, T. Parks Remcho, Xuebin Qin, Jay K. Kolls, Andrew Pekosz
272 [GO] Microbiology Spectrum 2023―Sep―22 Alternative molecular and genomic strategies to provide a rapid response to alerts concerning the introduction of new emerging SARS-CoV-2 variants: the Omicron alert Marta Herranz, Sergio Buenestado-Serrano, Javier Martín-Escolano, Andrea Molero-Salinas, Roberto Alonso, Pilar Catalán, et al. (+59)
273 [GO] Journal of Microbiology and Biology Education 2023―Sep―22 Supporting the democratization of science during a pandemic: genomics Course-based Undergraduate Research Experiences (CUREs) as an effective remote learning strategy David Lopatto, S. Catherine Silver Key, Melanie Van Stry, Jamie Siders, Wilson Leung, Katie M. Sandlin, et al. (+91)
274 [GO] Microbiology Spectrum 2023―Sep―20 Disentangling the interactions between nasopharyngeal and gut microbiome and their involvement in the modulation of COVID-19 infection Leonardo Mancabelli, Giuseppe Taurino, Andrea Ticinesi, Tecla Ciociola, Federica Vacondio, Christian Milani, et al. (+14)
275 [GO] Microbiology Spectrum 2023―Sep―20 Performance of the Cue COVID-19 point-of-care molecular test: insights from a multi-site clinic service model Anu Rebbapragada, Lane Cariazo, David Elchuk, Hossam Abdelrahman, Dang Pham, Jerusha Raveendraraj, et al. (+6)
276 [GO] Journal of Virology 2023―Sep―20 Functional comparisons of the virus sensor RIG-I from humans, the microbat Myotis daubentonii , and the megabat Rousettus aegyptiacus , and their response to SARS-CoV-2 infection Andreas Schoen, Martin Hölzer, Marcel A. Müller, Kai B. Wallerang, Christian Drosten, Manja Marz, et al. (+3)
277 [GO] Journal of Clinical Microbiology 2023―Sep―20 Sensitivity of rapid antigen tests against SARS-CoV-2 Omicron and Delta variants Anuradha Rao, Adrianna Westbrook, Leda Bassit, Richard Parsons, Eric Fitts, Morgan Greenleaf, et al. (+18)
278 [GO] Journal of Virology 2023―Sep―19 Determination of the factors responsible for the tropism of SARS-CoV-2-related bat coronaviruses to Rhinolophus bat ACE2 Shigeru Fujita, Yusuke Kosugi, Izumi Kimura, Kenzo Tokunaga, Jumpei Ito, Kei Sato, et al. (+75)
279 [GO] Microbiology Spectrum 2023―Sep―15 A disintegrin and metalloproteinase domain 9 facilitates SARS-CoV-2 entry into cells with low ACE2 expression Ivonne Melano, Wei-Chung Cheng, Li-Lan Kuo, Yuag-Meng Liu, Yu Chi Chou, Mien-Chie Hung, et al. (+4)
280 [GO] Microbiology Spectrum 2023―Sep―14 Canine respiratory coronavirus in Thailand undergoes mutation and evidences a potential putative parent for genetic recombination Panida Poonsin, Vorapun Wiwatvisawakorn, Jira Chansaenroj, Yong Poovorawan, Chutchai Piewbang, Somporn Techangamsuwan, Frederick S. B. Kibenge
281 [GO] Journal of Virology 2023―Sep―14 On a path toward a broad-spectrum anti-viral: inhibition of HIV-1 and coronavirus replication by SR kinase inhibitor harmine Subha Dahal, Kiera Clayton, Tyler Cabral, Ran Cheng, Shahrzad Jahanshahi, Choudhary Ahmed, et al. (+14)
282 [GO] Journal of Virology 2023―Sep―14 Broad-spectrum vaccine via combined immunization routes triggers potent immunity to SARS-CoV-2 and its variants Man Xing, Yihan Wang, Xinyu Wang, Jiaojiao Liu, Weiqian Dai, Gaowei Hu, et al. (+14)
283 [GO] Microbiology Spectrum 2023―Sep―12 Identifying featured indels associated with SARS-CoV-2 fitness Xiang Li, Hongliang Yan, Gary Wong, Wanli Ouyang, Jie Cui, Holly Ramage
284 [GO] Microbiology Spectrum 2023―Sep―11 Identification and characterization of novel alphacoronaviruses in Tadarida brasiliensis (Chiroptera, Molossidae) from Argentina: insights into recombination as a mechanism favoring bat coronavirus cross-species transmission Agustina Cerri, Elisa M. Bolatti, Tomaz M. Zorec, Maria E. Montani, Agustina Rimondi, Lea Hosnjak, et al. (+6)
285 [GO] Journal of Virology 2023―Sep―11 PARP12 is required to repress the replication of a Mac1 mutant coronavirus in a cell- and tissue-specific manner Catherine M. Kerr, Srivatsan Parthasarathy, Nancy Schwarting, Joseph J. O'Connor, Jessica J. Pfannenstiel, Emily Giri, et al. (+4)
286 [GO] mBio 2023―Sep―08 Predicting COVID-19 prognosis in hospitalized patients based on early status David Natanov, Byron Avihai, Erin McDonnell, Eileen Lee, Brennan Cook, Nicole Altomare, et al. (+9)
287 [GO] Journal of Virology 2023―Sep―07 Characterization of the SARS-CoV-2 BA.5.5 and BQ.1.1 Omicron variants in mice and hamsters James Brett Case, Suzanne M. Scheaffer, Tamarand L. Darling, Traci L. Bricker, Lucas J. Adams, Houda H. Harastani, et al. (+6)
288 [GO] Microbiology Spectrum 2023―Sep―07 Analysis of SARS-CoV-2 isolates, namely the Wuhan strain, Delta variant, and Omicron variant, identifies differential immune profiles Shima Shahbaz, Najmeh Bozorgmehr, Julia Lu, Mohammed Osman, Wendy Sligl, D. Lorne Tyrrell, et al. (+2)
289 [GO] Microbiology Spectrum 2023―Sep―07 Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single-cell RNA sequencing Phillip Cohen, Emma J. DeGrace, Oded Danziger, Roosheel S. Patel, Erika A. Barrall, Tesia Bobrowski, et al. (+6)
290 [GO] Microbiology Spectrum 2023―Sep―07 A tool for the cheap and rapid screening of SARS-CoV-2 variants of concern (VoCs) by Sanger sequencing Germán Burgos, Andrés Ambuludí, Diana Morales-Jadán, Miguel Angel Garcia-Bereguiain, Claire Muslin, Vinicio Armijos-Jaramillo, et al. (+12)
291 [GO] Journal of Virology 2023―Sep―07 Structural basis of white-tailed deer, Odocoileus virginianus , ACE2 recognizing all the SARS-CoV-2 variants of concern with high affinity Pu Han, Yumin Meng, Di Zhang, Zepeng Xu, Zhiyuan Li, Xiaoqian Pan, et al. (+7)
292 [GO] Microbiology Resource Announcements 2023―Sep―05 Coding-complete genomes of XBB.1.16, XBB.2.3, FL.4 (alias of XBB.1.9.1.4), and XBB.3 of SARS-CoV-2 Omicron isolated from Bangladesh Saikt Rahman, Mohammad Tanbir Habib, Mokibul Hassan Afrad, Mahin Hasan, Anika Tahsin, Mohammad Jubair, et al. (+8)
293 [GO] Microbiology Spectrum 2023―Aug―31 SARS-CoV-2 omicron spike simulations: broad antibody escape, weakened ACE2 binding, and modest furin cleavage M. Zaki Jawaid, A. Baidya, R. Mahboubi-Ardakani, Richard L. Davis, Daniel L. Cox, N. Esther Babady
294 [GO] mBio 2023―Aug―25 SARS-CoV-2 ORF8 accessory protein is a virulence factor M. Bello-Perez, J. Hurtado-Tamayo, A. Z. Mykytyn, M. M. Lamers, R. Requena-Platek, D. Schipper, et al. (+8)
295 [GO] Journal of Virology 2023―Aug―21 Characterization of a mouse-adapted strain of bat severe acute respiratory syndrome-related coronavirus Hao-Feng Lin, Mei-Qin Liu, Ren-Di Jiang, Qian-Chun Gong, Jia Su, Zi-Shuo Guo, et al. (+13)
296 [GO] Microbiology Spectrum 2023―Aug―21 SARS-CoV-2 infection severity and mortality is modulated by repeat-mediated regulation of alternative splicing Priyanka Mehta, Partha Chattopadhyay, Varsha Ravi, Bansidhar Tarai, Sandeep Budhiraja, Rajesh Pandey, Yun Young Go
297 [GO] mBio 2023―Aug―15 Pyronaridine tetraphosphate is an efficacious antiviral and anti-inflammatory active against multiple highly pathogenic coronaviruses Jeremy Ardanuy, Robert Johnson, Carly Dillen, Louis Taylor, Holly Hammond, Stuart Weston, et al. (+2)
298 [GO] Journal of Virology 2023―Aug―14 Structural evolution of SARS-CoV-2 omicron in human receptor recognition Wei Zhang, Ke Shi, Qibin Geng, Morgan Herbst, Michael Wang, Linfen Huang, et al. (+5)
299 [GO] Microbiology Spectrum 2023―Aug―11 Importance of genomic surveillance of SARS-CoV-2 in cats during reverse zoonosis events: potential viral evolution may occur Sandra Barroso-Arévalo, Marta Díaz-Frutos, Lucas Domínguez, José M. Sánchez-Vizcaíno, Clinton J. Jones
300 [GO] Journal of Virology 2023―Aug―09 Comparison of SARS-CoV-2 entry inhibitors based on ACE2 receptor or engineered Spike-binding peptides George N. Llewellyn, Hsu-Yu Chen, Geoffrey L. Rogers, Xiaoli Huang, Philip J. Sell, Jill E. Henley, et al. (+2)
301 [GO] Journal of Virology 2023―Aug―09 SARS-CoV-2 Omicron entry is type II transmembrane serine protease-mediated in human airway and intestinal organoid models Anna Z. Mykytyn, Tim I. Breugem, Maarten H. Geurts, Joep Beumer, Debby Schipper, Romy van Acker, et al. (+7)
302 [GO] Microbiology Spectrum 2023―Aug―08 Salivary antibodies induced by BA.4/BA.5-convalescence or bivalent booster Immunoglobulin vaccination protect against novel SARS-COV-2 variants of concern Gabriel Diem, Stefanie Dichtl, Viktoria Zaderer, Cornelia Lass-Flörl, Markus Reindl, Gaia Lupoli, et al. (+8)
303 [GO] mSystems 2023―Aug―07 The intestinal microbiota predicts COVID-19 severity and fatality regardless of hospital feeding method Vanni Bucci, Doyle V. Ward, Shakti Bhattarai, Mayra Rojas-Correa, Ayan Purkayastha, Devon Holler, et al. (+13)
304 [GO] mBio 2023―Aug―03 Tixagevimab/cilgavimab for preventing COVID-19 during the Omicron surge: retrospective analysis of National Veterans Health Administration electronic data Yinong Young-Xu, Lauren Epstein, Vincent C. Marconi, Victoria Davey, Caroline Korves, Gabrielle Zwain, et al. (+5)
305 [GO] mBio 2023―Aug―03 Anamnestic humoral correlates of immunity across SARS-CoV-2 variants of concern Ryan P. McNamara, Jenny S. Maron, Julie Boucau, Vicky Roy, Nicholas E. Webb, Harry L. Bertera, et al. (+16)
306 [GO] Journal of Virology 2023―Jul―28 Ifit2 restricts murine coronavirus spread to the spinal cord white matter and its associated myelin pathology Madhav Sharma, Debanjana Chakravarty, Afaq Hussain, Ajay Zalavadia, Amy Burrows, Patricia Rayman, et al. (+6)
307 [GO] mBio 2023―Jul―28 SARS-CoV-2 infection alters mitochondrial and cytoskeletal function in human respiratory epithelial cells mediated by expression of spike protein Bonnie H. Yeung-Luk, Gitanjali A. Narayanan, Baishakhi Ghosh, Ara Wally, Esther Lee, Michelle Mokaya, et al. (+13)
308 [GO] mSystems 2023―Jul―25 Bayesian sequential approach to monitor COVID-19 variants through test positivity rate from wastewater J. Cricelio Montesinos-López, Maria L. Daza-Torres, Yury E. García, César Herrera, C. Winston Bess, Heather N. Bischel, et al. (+2)
309 [GO] mBio 2023―Jul―21 SARS-CoV-2 nonstructural protein 6 from Alpha to Omicron: evolution of a transmembrane protein Shuchen Feng, Amornrat O'Brien, Da-Yuan Chen, Mohsan Saeed, Susan C. Baker, J. S. Malik Peiris
310 [GO] Journal of Clinical Microbiology 2023―Jul―19 Postpandemic Effects of COVID-19 Shelter-in-Place Orders on the Gastrointestinal Pathogen Landscape Philip L. Bulterys, Nicole Y. Leung, Atif Saleem, Indre Budvytiene, Benjamin A. Pinsky, Niaz Banaei, Randall Hayden
311 [GO] mBio 2023―Jul―13 SARS-CoV-2 main protease cleaves MAGED2 to antagonize host antiviral defense Xiaohui Ju, Ziqiao Wang, Pengcheng Wang, Wenlin Ren, Yanying Yu, Yin Yu, et al. (+10)
312 [GO] mBio 2023―Jul―12 Bidirectional interplay between SARS-CoV-2 and autophagy Hao Zhou, Zhiqiang Hu, Sergio Castro-Gonzalez, Vinayaka R. Prasad
313 [GO] mSystems 2023―Jul―11 Paired associated SARS-CoV-2 spike variable positions: a network analysis approach to emerging variants Yiannis Manoussopoulos, Cleo Anastassopoulou, John P. A. Ioannidis, Athanasios Tsakris, Ileana M. Cristea
314 [GO] Microbiology Spectrum 2023―Jul―11 Unveiling a New Perspective on Distinguishing Omicron Breakthrough Cases and Postimmune COVID-19-Naive Individuals: Insights from Antibody Profiles Shihan Zhang, Chen Dong, Qian Zhen, Chao Shi, Hua Tian, Chuchu Li, et al. (+13)
315 [GO] Microbiology Spectrum 2023―Jul―10 Breadth and Durability of SARS-CoV-2-Specific T Cell Responses following Long-Term Recovery from COVID-19 Thi Thu Thao Dang, Alitzel Anzurez, Kaori Nakayama-Hosoya, Shoji Miki, Kazuo Yamashita, Mark de Souza, et al. (+3)
316 [GO] Microbiology Spectrum 2023―Jul―10 Determining the Time of Booster Dose Based on the Half-Life and Neutralization Titers against SARS-CoV-2 Variants of Concern in Fully Vaccinated Individuals Yu-Ching Dai, Yen-Chia Lin, Lauren L. Ching, Jih-Jin Tsai, Kyle Ishikawa, Wen-Yang Tsai, et al. (+4)
317 [GO] Microbiology Spectrum 2023―Jul―06 Molecular Diversity of Human Respiratory Syncytial Virus before and during the COVID-19 Pandemic in Two Neighboring Japanese Cities Takashi Ono, Koichi Hashimoto, Yohei Kume, Mina Chishiki, Hisao Okabe, Masatoki Sato, et al. (+15)
318 [GO] mSphere 2023―Jul―06 Development of monoclonal antibody-based blocking ELISA for detecting SARS-CoV-2 exposure in animals Fangfeng Yuan, Chi Chen, Lina M. Covaleda, Mathias Martins, Jennifer M. Reinhart, Drew R. Sullivan, et al. (+3)
319 [GO] Applied and Environmental Microbiology 2023―Jul―05 Variability in Donor Lung Culture and Relative Humidity Impact the Stability of 2009 Pandemic H1N1 Influenza Virus on Nonporous Surfaces Zhihong Qian, Dylan H. Morris, Annika Avery, Karen A. Kormuth, Valerie Le Sage, Michael M. Myerburg, et al. (+4)
320 [GO] Journal of Clinical Microbiology 2023―Jul―03 Comparison of an ID NOW COVID-19 Assay Used at the Point of Care to Laboratory-Based Nucleic Acid Amplification Tests David Payne, Channyn Williams, Justin Jacob, Shelby Chastain-Potts, Michael Adjei, Berihun Taye, et al. (+4)
321 [GO] Journal of Clinical Microbiology 2023―Jul―03 RADx-UP Testing Core: Access to COVID-19 Diagnostics in Community-Engaged Research with Underserved Populations Shanti Narayanasamy, Timothy H. Veldman, Mark J. Lee, William A. Glover, L. Gayani Tillekeratne, Coralei E. Neighbors, et al. (+13)
322 [GO] Microbiology Spectrum 2023―Jul―03 Porcine Epidemic Diarrhea Virus, Surrogate for Coronavirus Decay Measurement in French Coastal Waters and Contribution to Coronavirus Risk Evaluation Maud Contrant, Lionel Bigault, Mathieu Andraud, Marion Desdouits, Sophie Rocq, Françoise S. Le Guyader, et al. (+2)
323 [GO] Microbiology Spectrum 2023―Jul―03 Broadly Effective ACE2 Decoy Proteins Protect Mice from Lethal SARS-CoV-2 Infection Mengjia Lu, Weitong Yao, Yujun Li, Danting Ma, Zhaoyong Zhang, Haimin Wang, et al. (+9)
324 [GO] mBio 2023―Jun―30 Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data A. E. Roder, K. E. E. Johnson, M. Knoll, M. Khalfan, B. Wang, S. Schultz-Cherry, et al. (+16)
325 [GO] mBio 2023―Jun―29 Restriction of SARS-CoV-2 replication by receptor transporter protein 4 (RTP4) Ramanjit Kaur, Takuya Tada, Nathaniel Roy Landau, Ronald Swanstrom
326 [GO] mBio 2023―Jun―29 Adaptive variations in SARS-CoV-2 spike proteins: effects on distinct virus-cell entry stages Enya Qing, Tom Gallagher, Kanta Subbarao
327 [GO] mBio 2023―Jun―28 mLST8 is essential for coronavirus replication and regulates its replication through the mTORC1 pathway Yanan Fu, Zhen Fu, Zhelin Su, Lisha Li, Yilin Yang, Yubei Tan, et al. (+7)
328 [GO] mBio 2023―Jun―28 SARS-CoV-2 ORF6 protein does not antagonize interferon signaling in respiratory epithelial Calu-3 cells during infection Minghua Li, Kasirajan Ayyanathan, Mark Dittmar, Jesse Miller, Iulia Tapescu, Jae Seung Lee, et al. (+7)
329 [GO] Microbiology Spectrum 2023―Jun―27 Rapid Establishment of a Biospecimen Resource To Study the Global Impact of COVID-19 Vaccines K. E. Berliner, T. Ezzelle, T. Klenk, G. Dunn, J. Sischo, D. Campbell, et al. (+2)
330 [GO] Journal of Virology 2023―Jun―27 Identification of a 1.4-kb-Long Sequence Located in the nsp12 and nsp13 Coding Regions of SARS-CoV-2 Genomic RNA That Mediates Efficient Viral RNA Packaging Kaori Terasaki, Krishna Narayanan, Shinji Makino, Tom Gallagher
331 [GO] Microbiology Spectrum 2023―Jun―27 Wnt-Independent SARS-CoV-2 Infection in Pulmonary Epithelial Cells Alexey Koval, Jiabin Xu, Nathalia Williams, Mirco Schmolke, Karl-Heinz Krause, Vladimir L. Katanaev, Alison Sinclair
332 [GO] Applied and Environmental Microbiology 2023―Jun―27 Efficacy of Peracetic Acid and Sodium Hypochlorite against SARS-CoV-2 on Contaminated Surfaces J. N. Morris, M. A. Esseili, Christopher A. Elkins
333 [GO] mBio 2023―Jun―23 SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication Christina A. Higgins, Benjamin E. Nilsson-Payant, Boris Bonaventure, Andrew P. Kurland, Chengjin Ye, Tomer M. Yaron, et al. (+11)
334 [GO] Journal of Virology 2023―Jun―23 SARS-CoV-2 nsp13 Restricts Episomal DNA Transcription without Affecting Chromosomal DNA Aixin Li, Bei Zhang, Kaitao Zhao, Zhinang Yin, Yan Teng, Lu Zhang, et al. (+5)
335 [GO] Microbiology Spectrum 2023―Jun―22 Evaluation of Ortho VITROS and Roche Elecsys S and NC Immunoassays for SARS-CoV-2 Serosurveillance Applications Hasan Sulaeman, Eduard Grebe, Honey Dave, Lily McCann, Clara Di Germanio, Aditi Sanghavi, et al. (+10)
336 [GO] Microbiology Spectrum 2023―Jun―20 A Phase 2 Randomized Trial Evaluating the Antiviral Activity and Safety of the Direct-Acting Antiviral Bemnifosbuvir in Ambulatory Patients with Mild or Moderate COVID-19 (MOONSONG Study) Marta Boffito, Eamon Dolan, Karishma Singh, William Holmes, Steffen Wildum, Arantxa Horga, et al. (+6)
337 [GO] mBio 2023―Jun―20 A mutation in the coronavirus nsp13-helicase impairs enzymatic activity and confers partial remdesivir resistance Samantha L. Grimes, Young J. Choi, Anoosha Banerjee, Gabriel Small, Jordan Anderson-Daniels, Jennifer Gribble, et al. (+8)
338 [GO] mSphere 2023―Jun―20 Longitudinal and quantitative fecal shedding dynamics of SARS-CoV-2, pepper mild mottle virus, and crAssphage Peter J. Arts, J. Daniel Kelly, Claire M. Midgley, Khamal Anglin, Scott Lu, Glen R. Abedi, et al. (+18)
339 [GO] Microbiology Spectrum 2023―Jun―15 Glycosylated, Lipid-Binding, CDR-Like Domains of SARS-CoV-2 ORF8 Indicate Unique Sites of Immune Regulation Fang Wu, Xin Chen, Yanhong Ma, Yuzhe Wu, Rui Li, Yuanwei Huang, et al. (+6)
340 [GO] Microbiology Spectrum 2023―Jun―14 Daily SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious People Due to Viral Load Differences among Specimen Types Alexander Viloria Winnett, Reid Akana, Natasha Shelby, Hannah Davich, Saharai Caldera, Taikun Yamada, et al. (+11)
341 [GO] mSystems 2023―Jun―14 High-sensitivity profiling of SARS-CoV-2 noncoding region-host protein interactome reveals the potential regulatory role of negative-sense viral RNA Liuyiqi Jiang, Mu Xiao, Qing-Qing Liao, Luqian Zheng, Chunyan Li, Yuemei Liu, et al. (+5)
342 [GO] mSystems 2023―Jun―13 Diversity, composition, and networking of saliva microbiota distinguish the severity of COVID-19 episodes as revealed by an analysis of 16S rRNA variable V1-V3 region sequences Violeta Larios Serrato, Beatriz Meza, Carolina Gonzalez-Torres, Javier Gaytan-Cervantes, Joaquín González Ibarra, Clara Esperanza Santacruz Tinoco, et al. (+14)
343 [GO] Applied and Environmental Microbiology 2023―Jun―13 Combined Infection Control Interventions Protect Essential Food Workers from Occupational Exposures to SARS-CoV-2 in the Agricultural Environment D. Kane Cooper, Julia S. Sobolik, Jovana Kovacevic, Channah M. Rock, Elizabeth T. Sajewski, Jodie L. Guest, et al. (+4)
344 [GO] Microbiology Resource Announcements 2023―Jun―13 Complete Coding Sequence of a Lineage AY.122 SARS-CoV-2 Virus Strain Detected in Kazakhstan Bekbolat Usserbayev, Yergali Abduraimov, Nurlan Kozhabergenov, Aibarys Melisbek, Meirzhan Shirinbekov, Manar Smagul, et al. (+4)
345 [GO] mBio 2023―Jun―12 The unfolded protein response components IRE1α and XBP1 promote human coronavirus infection Jessica M. Oda, Andreas B. den Hartigh, Shoen M. Jackson, Ana R. Tronco, Susan L. Fink, Sara Cherry, Matthew B. Frieman
346 [GO] Microbiology Spectrum 2023―Jun―12 Digital PCR Discriminates between SARS-CoV-2 Omicron Variants and Immune Escape Mutations Steven C. Holland, LaRinda A. Holland, Matthew F. Smith, Mihyun B. Lee, James C. Hu, Efrem S. Lim, Salika M. Shakir
347 [GO] Microbiology Spectrum 2023―Jun―12 A Novel Conserved Linear Neutralizing Epitope on the Receptor-Binding Domain of the SARS-CoV-2 Spike Protein Rong-Hong Hua, Shu-Jian Zhang, Bei Niu, Jin-Ying Ge, Ting Lan, Zhi-Gao Bu, Bo Zhang
348 [GO] Journal of Virology 2023―Jun―12 Erratum for Wang et al., “A Nanobody Targeting Viral Nonstructural Protein 9 Inhibits Porcine Reproductive and Respiratory Syndrome Virus Replication” Lizhen Wang, Lu Zhang, Baicheng Huang, Kuokuo Li, Gaopeng Hou, Qin Zhao, et al. (+7)
349 [GO] mBio 2023―Jun―09 Mild SARS-CoV-2 infection results in long-lasting microbiota instability Vaibhav Upadhyay, Rahul K. Suryawanshi, Preston Tasoff, Maria McCavitt-Malvido, Renuka G. Kumar, Victoria Wong Murray, et al. (+11)
350 [GO] Microbiology Spectrum 2023―Jun―08 A Saliva-Based Serological and Behavioral Analysis of SARS-CoV-2 Antibody Prevalence in Howard County, Maryland Alan C. Brown, Phillip T. Koshute, Hannah P. Cowley, Michael S. Robinette, Sarah R. Gravelyn, Shraddha V. Patel, et al. (+12)
351 [GO] Microbiology Spectrum 2023―Jun―08 Diminished Neutralization Capacity of SARS-CoV-2 Omicron BA.1 in Donor Plasma Collected from January to March 2021 Yi-Chan J. Lin, David H. Evans, Ninette F. Robbins, Guillermo Orjuela, Kento T. Abe, Bhavisha Rathod, et al. (+7)
352 [GO] Microbiology Spectrum 2023―Jun―07 Seroprevalence of COVID-19 in Oran: Cross-Sectional Study Abdessamad Dali-Ali, Dalia Kheira Derkaoui, Mohamed Zina, Asmaa Oukebdane, Rosemary C. She
353 [GO] Microbiology Spectrum 2023―Jun―06 Comparative Analysis of Antimicrobial Antibodies between Mild and Severe COVID-19 Ji Qiu, Anna Engelbrektson, Lusheng Song, Jin Park, Vel Murugan, Stacy Williams, et al. (+13)
354 [GO] Antimicrobial Agents and Chemotherapy 2023―Jun―06 Frequent Emergence of Resistance Mutations Following Complex Intra-Host Genomic Dynamics in SARS-CoV-2 Patients Receiving Sotrovimab Rosalía Palomino-Cabrera, Francisco Tejerina, Andrea Molero-Salinas, María Ferris, Cristina Veintimilla, Pilar Catalán, et al. (+61)
355 [GO] Microbiology Spectrum 2023―Jun―05 A Customized Novel Blocking ELISA for Detection of Bat-Origin Swine Acute Diarrhea Syndrome Coronavirus Infection Liyan Cao, Xiangyu Kong, Xiangtong Li, Xuepeng Suo, Yueyue Duan, Cong Yuan, et al. (+4)
356 [GO] mBio 2023―Jun―05 SARS-CoV-2 within-host diversity of human hosts and its implications for viral immune evasion Binbin Xi, Xi Zeng, Zixi Chen, Jiong Zeng, Lizhen Huang, Hongli Du, Chunfu Zheng
357 [GO] Journal of Microbiology and Biology Education 2023―Jun―01 Promoting RAPID Vaccine Science Education at the Onset of the COVID-19 Pandemic Davida S. Smyth, Trace Jordan, Robert Seiser, Meghan Moran, Ulla Hasager, Sheryl Sorby, et al. (+4)
358 [GO] Microbiology Spectrum 2023―Jun―01 SARS-CoV-2 Co-Infections and Recombinations Identified by Long-Read Single-Molecule Real-Time Sequencing Pauline Trémeaux, Justine Latour, Noémie Ranger, Vénicia Ferrer, Agnès Harter, Romain Carcenac, et al. (+6)
359 [GO] Journal of Virology 2023―May―31 Activation of the NLRP1 Inflammasome and Its Role in Transmissible Gastroenteritis Coronavirus Infection Haojie He, Wenzhe Wang, Liang Li, Xin Zhang, Hongyan Shi, Jianfei Chen, et al. (+4)
360 [GO] Clinical Microbiology Reviews 2023―May―30 Erratum for Nyaruaba et al., “Digital PCR Applications in the SARS-CoV-2/COVID-19 Era: a Roadmap for Future Outbreaks” Raphael Nyaruaba, Caroline Mwaliko, David Dobnik, Pavel Neužil, Patrick Amoth, Matilu Mwau, et al. (+3)
361 [GO] Microbiology Resource Announcements 2023―May―24 Coding-Complete Genome Sequences of an Omicron Subvariant (BA.5.2.20) of SARS-CoV-2 Zineb Rhazzar, Mouhssine Hemlali, Marouane Melloul, Maha Ouarab, Omar Nyabi, Mostafa Elouennass, et al. (+5)
362 [GO] Microbiology Spectrum 2023―May―24 Efficient Direct and Limited Environmental Transmission of SARS-CoV-2 Lineage B.1.22 in Domestic Cats Nora M. Gerhards, Jose L. Gonzales, Sandra Vreman, Lars Ravesloot, Judith M. A. van den Brand, Harmen P. Doekes, et al. (+6)
363 [GO] Microbiology Spectrum 2023―May―22 Multicenter Diagnostic Evaluation of OnSite COVID-19 Rapid Test (CTK Biotech) among Symptomatic Individuals in Brazil and the United Kingdom Caitlin R. Thompson, Pablo Muñoz Torres, Konstantina Kontogianni, Rachel L. Byrne, Saidy Vásconez Noguera, Alessandra Luna-Muschi, et al. (+51)
364 [GO] Microbiology Spectrum 2023―May―22 Honokiol Inhibits SARS-CoV-2 Replication in Cell Culture at a Post-Entry Step Clarisse Salgado-Benvindo, Anouk A. Leijs, Melissa Thaler, Ali Tas, Jack L. Arbiser, Eric J. Snijder, et al. (+2)
365 [GO] Microbiology Spectrum 2023―May―18 Spike-Independent Infection of Human Coronavirus 229E in Bat Cells Marcus G. Mah, Martin Linster, Dolyce H. W. Low, Yan Zhuang, Jayanthi Jayakumar, Firdaus Samsudin, et al. (+6)
366 [GO] Journal of Virology 2023―May―18 The Highly Conserved Stem-Loop II Motif Is Dispensable for SARS-CoV-2 Hongbing Jiang, Astha Joshi, Tianyu Gan, Andrew B. Janowski, Chika Fujii, Traci L. Bricker, et al. (+13)
367 [GO] Microbiology Spectrum 2023―May―18 SARS-CoV-2 Nucleocapsid Protein Is a Potential Therapeutic Target for Anticoronavirus Drug Discovery Austin Royster, Songyang Ren, Yutian Ma, Melissa Pintado, Eunice Kahng, Sean Rowan, et al. (+3)
368 [GO] Microbiology Spectrum 2023―May―18 The Influence of Adjuvant Type on the Immunogenicity of RBD/N Cocktail Antigens as a Vaccine Candidate against SARS-CoV-2 Virus Gabriela Brzuska, Marta Zimna, Klaudia Baranska, Boguslaw Szewczyk, Petra Strakova, Daniel Ruzek, et al. (+2)
369 [GO] Microbiology Spectrum 2023―May―16 Antibody Response to the BA.5 Bivalent Vaccine Shot: a Two-Year Follow-Up Study following Initial COVID-19 mRNA Vaccination Yosuke Hirotsu, Hiroki Sugiura, Mika Takatori, Hitoshi Mochizuki, Masao Omata, Takamasa Ueno
370 [GO] Microbiology Spectrum 2023―May―16 Molecular Characterization of the Convergent Carbapenem-Resistant and Hypervirulent Klebsiella pneumoniae Strain K1-ST23, Collected in Chile during the COVID-19 Pandemic Felipe Morales-León, Maximiliano Matus-Köhler, Pablo Araya-Vega, Felipe Aguilera, Ignacio Torres, Rodrigo Vera, et al. (+6)
371 [GO] Microbiology Spectrum 2023―May―16 Assay Harmonization Study To Measure Immune Response to SARS-CoV-2 Infection and Vaccines: a Serology Methods Study Troy J. Kemp, Heidi A. Hempel, Yuanji Pan, Daisy Roy, James Cherry, Douglas R. Lowy, et al. (+2)
372 [GO] Microbiology Spectrum 2023―May―16 The Principles of SARS-CoV-2 Intervariant Competition Are Exemplified in the Pre-Omicron Era of the Colombian Epidemic Gregory S. Orf, Lester J. Pérez, Karl Ciuoderis, Andrés Cardona, Simón Villegas, Juan P. Hernández-Ortiz, et al. (+6)
373 [GO] Microbiology Spectrum 2023―May―16 Serodominant SARS-CoV-2 Nucleocapsid Peptides Map to Unstructured Protein Regions Jacob P. Vandervaart, Nicole L. Inniss, Ted Ling-Hu, George Minasov, Grant Wiersum, Monica Rosas-Lemus, et al. (+6)
374 [GO] Microbiology Spectrum 2023―May―16 Immunization with Recombinant Accessory Protein-Deficient SARS-CoV-2 Protects against Lethal Challenge and Viral Transmission Chengjin Ye, Jun-Gyu Park, Kevin Chiem, Piyush Dravid, Anna Allué-Guardia, Andreu Garcia-Vilanova, et al. (+9)
375 [GO] Journal of Virology 2023―May―16 Identification and Analysis of Monoclonal Antibodies with Neutralizing Activity against Diverse SARS-CoV-2 Variants Hanako Ishimaru, Mitsuhiro Nishimura, Lidya Handayani Tjan, Silvia Sutandhio, Maria Istiqomah Marini, Gema Barlian Effendi, et al. (+16)
376 [GO] Microbiology Spectrum 2023―May―16 Rapid Detection of Predominant SARS-CoV-2 Variants Using Multiplex High-Resolution Melting Analysis Liying Sun, Liqin Wang, Chi Zhang, Yan Xiao, Lulu Zhang, Ziyuan Zhao, et al. (+3)
377 [GO] Applied and Environmental Microbiology 2023―May―15 Rapid Virucidal Activity of Japanese Saxifraga Species-Derived Condensed Tannins against SARS-CoV-2, Influenza A Virus, and Human Norovirus Surrogate Viruses Toshihiro Murata, Dulamjav Jamsransuren, Sachiko Matsuda, Haruko Ogawa, Yohei Takeda, Karyn N. Johnson
378 [GO] Microbiology Spectrum 2023―May―11 A Reagent and Virus Benchmarking Panel for a Uniform Analytical Performance Assessment of N Antigen-Based Diagnostic Tests for COVID-19 Allison Golden, Jason L. Cantera, Lorraine Lillis, Thanh T. Phan, Hannah Slater, Edwin J. Webb, et al. (+4)
379 [GO] Microbiology Spectrum 2023―May―11 Robust Vaccine-Induced as Well as Hybrid B- and T-Cell Immunity across SARS-CoV-2 Vaccine Platforms in People with HIV Myrthe L. Verburgh, Lisa van Pul, Marloes Grobben, Anders Boyd, Ferdinand W. N. M. Wit, Ad C. van Nuenen, et al. (+80)
380 [GO] Microbiology Spectrum 2023―May―10 SARS-CoV-2 S1 Subunit Booster Vaccination Elicits Robust Humoral Immune Responses in Aged Mice Eun Kim, Muhammad S. Khan, Alessandro Ferrari, Shaohua Huang, Josè C. Sammartino, Elena Percivalle, et al. (+5)
381 [GO] Microbiology Spectrum 2023―May―09 Comprehensive, Comparative Evaluation of 35 Manual SARS-CoV-2 Serological Assays Wayne Dimech, Shannon Curley, Lorenzo Subissi, Ute Ströher, Mark D. Perkins, Jane Cunningham, Oliver Laeyendecker
382 [GO] Microbiology Spectrum 2023―May―08 The Nucleocapsid Proteins of SARS-CoV-2 and Its Close Relative Bat Coronavirus RaTG13 Are Capable of Inhibiting PKR- and RNase L-Mediated Antiviral Pathways Kyle LeBlanc, Jessie Lynch, Christine Layne, Robert Vendramelli, Angela Sloan, Nikesh Tailor, et al. (+7)
383 [GO] Microbiology Spectrum 2023―May―08 Efficient SARS-CoV-2 Surveillance during the Pandemic-Endemic Transition Using PCR-Based Genotyping Assays Lianne Koets, Karin van Leeuwen, Maaike Derlagen, Jalenka van Wijk, Nadia Keijzer, Jelena D. M. Feenstra, et al. (+5)
384 [GO] Microbiology Spectrum 2023―May―04 A Multicenter Randomized Controlled Trial To Evaluate the Efficacy and Safety of Nelfinavir in Patients with Mild COVID-19 Taiga Miyazaki, Naoki Hosogaya, Yuri Fukushige, Sachiko Takemori, Shinpei Morimoto, Hiroshi Yamamoto, et al. (+34)
385 [GO] Microbiology Resource Announcements 2023―May―03 Complete Genome Sequence of a Bovine Coronavirus Isolated from a Goat in Pennsylvania, USA Shubhada K. Chothe, Maurice Byukusenge, Manoj K. Sekhwal, Lingling Li, Lindsey Cecelia LaBella, Padmaja Jakka, et al. (+9)
386 [GO] Journal of Virology 2023―May―03 Coronavirus Porcine Epidemic Diarrhea Virus Utilizes Chemokine Interleukin-8 to Facilitate Viral Replication by Regulating Ca 2+ Flux Xuyang Guo, Yingtong Feng, Xiaojing Zhao, Shuang Qiao, Zhiqian Ma, Zhiwei Li, et al. (+3)
387 [GO] Journal of Virology 2023―May―03 Single-Virus Fusion Measurements Reveal Multiple Mechanistically Equivalent Pathways for SARS-CoV-2 Entry Anjali Sengar, Marcos Cervantes, Sai T. Bondalapati, Tobin Hess, Peter M. Kasson, Kanta Subbarao
388 [GO] Microbiology Resource Announcements 2023―May―01 Erratum for Rondeau et al., “Accessible and Validated Processing of SARS-CoV-2 from Wastewater” Nicole C. Rondeau, Oliver J. Rose, Lina A. Ariyan, Brian J. Mailloux, JJ L. Miranda
389 [GO] Journal of Clinical Microbiology 2023―Apr―26 Role of Spillover and Spillback in SARS-CoV-2 Transmission and the Importance of One Health in Understanding the Dynamics of the COVID-19 Pandemic McKenzie N. Sparrer, Natasha F. Hodges, Tyler Sherman, Susan VandeWoude, Angela M. Bosco-Lauth, Christie E. Mayo, Romney M. Humphries
390 [GO] Microbiology Spectrum 2023―Apr―26 Carryover Contamination-Controlled Amplicon Sequencing Workflow for Accurate Qualitative and Quantitative Detection of Pathogens: a Case Study on SARS-CoV-2 Lifen Gao, Lun Li, Bin Fang, Zhiwei Fang, Yanghai Xiang, Min Zhang, et al. (+9)
391 [GO] Microbiology Spectrum 2023―Apr―25 COVID-19 Antigen Results Correlate with the Quantity of Replication-Competent SARS-CoV-2 in a Cross-Sectional Study of Ambulatory Adults during the Delta Wave Yuan-Po Tu, Christopher Green, Linhui Hao, Alexander L. Greninger, Jennifer F. Morton, Heather A. Sights, et al. (+3)
392 [GO] Journal of Virology 2023―Apr―25 Identification and Comparison of the Sialic Acid-Binding Domain Characteristics of Avian Coronavirus Infectious Bronchitis Virus Spike Protein Renrong You, Kangchengyin Liu, Min Huang, Lihua Tang, Xuehui Zhang, Yahui Huang, et al. (+5)
393 [GO] Microbiology Spectrum 2023―Apr―25 Optimization and Improvement of qPCR Detection Sensitivity of SARS-CoV-2 in Saliva Hui-Ying Ko, Yao-Tsun Li, Ya-Yuan Li, Ming-Tsai Chiang, Yi-Ling Lee, Wen-Chun Liu, et al. (+4)
394 [GO] Journal of Clinical Microbiology 2023―Apr―24 Prospective Performance Evaluation of the miDiagnostics COVID-19 PCR Test for Rapid SARS-CoV-2 Detection on Nasopharyngeal Swabs David A. G. Bos, Katrien Lagrou, Jan Y. Verbakel, Elitza S. Theel
395 [GO] Microbiology Spectrum 2023―Apr―24 Diagnostic Performance and Tolerability of Saliva and Nasopharyngeal Swab Specimens in the Detection of SARS-CoV-2 by RT-PCR Jaakko Ahti, Riikka Österback, Anniina Keskitalo, Kati Mokkala, Siina Vidbäck, Ville Veikkolainen, et al. (+6)
396 [GO] Microbiology Spectrum 2023―Apr―24 SARS-CoV-2 Outbreak Investigation Using Contact Tracing and Whole-Genome Sequencing in an Ontario Tertiary Care Hospital Kara K. Tsang, Shehryar Ahmad, Alanoud Aljarbou, Mohammed Al Salem, Sheridan J. C. Baker, Emily M. Panousis, et al. (+11)
397 [GO] Microbiology Spectrum 2023―Apr―24 The Environmental Stability of SARS-CoV-2 Variants Omicron BA.1 and BA.5 on the Surfaces of Widely Used Transport Packaging Materials Bei Wang, Lan Chen, Hongtao Sui, Xiaojing Dong, He Huang, Xinming Wang, et al. (+8)
398 [GO] Microbiology Spectrum 2023―Apr―20 MARCO Inhibits Porcine Reproductive and Respiratory Syndrome Virus Infection through Intensifying Viral GP5-Induced Apoptosis Xiaoxiao Zhang, Yongjie Chen, Songbei Li, Jinling Wang, Zhan He, Jiecong Yan, et al. (+3)
399 [GO] mBio 2023―Apr―19 Generation and Functional Analysis of Defective Viral Genomes during SARS-CoV-2 Infection Terry Zhou, Nora J. Gilliam, Sizhen Li, Simone Spandau, Raven M. Osborn, Sarah Connor, et al. (+9)
400 [GO] mBio 2023―Apr―19 Rational Discourse on Virology and Pandemics David Bahry
401 [GO] mSphere 2023―Apr―18 Longitudinal Follow-Up of the Immunity to SARS-CoV-2 in Health Care Workers in Argentina: Persistence of Humoral Response and Neutralizing Capacity after Sputnik V Vaccination Eliana F. Castro, Julián Acosta, Lucía Moriena, Mayra Rios Medrano, Malena Tejerina Cibello, Eduardo Codino, et al. (+4)
402 [GO] Journal of Clinical Microbiology 2023―Apr―18 Pandemic Demand for SARS-CoV-2 Testing Led to Critical Supply and Workforce Shortages in U.S. Clinical and Public Health Laboratories Nancy E. Cornish, Laura H. Bachmann, Daniel J. Diekema, L. Clifford McDonald, Peggy McNult, Jonathan Stevens-Garcia, et al. (+3)
403 [GO] mBio 2023―Apr―13 Deficient Phagocytosis in Circulating Monocytes from Patients with COVID-19-Associated Mucormycosis Bishnu Prasad Sinha, Priyanka Mehta, Md Asmaul Hoque, Purbita Bandopadhyay, Ayandip Nandi, Ipsita Saha, et al. (+8)
404 [GO] Microbiology Spectrum 2023―Apr―12 Isolation of Carbapenem and Colistin Resistant Gram-Negative Bacteria Colonizing Immunocompromised SARS-CoV-2 Patients Admitted to Some Libyan Hospitals Khouloud Slimene, Asrra A. Ali, Elhussan A. Mohamed, Allaaeddin El Salabi, Faraj S. Suliman, Agela A. Elbadri, et al. (+6)
405 [GO] mBio 2023―Apr―11 COVID-19 Serology Data Provide Guidance for Future Deployments of Convalescent Plasma David Sullivan, Arturo Casadevall
406 [GO] Journal of Virology 2023―Apr―11 SARS-CoV-2 Infection of Human Neurons Is TMPRSS2 Independent, Requires Endosomal Cell Entry, and Can Be Blocked by Inhibitors of Host Phosphoinositol-5 Kinase Pinja Kettunen, Angelina Lesnikova, Noora Räsänen, Ravi Ojha, Leena Palmunen, Markku Laakso, et al. (+10)
407 [GO] Journal of Virology 2023―Apr―11 The Papain-Like Protease of Porcine Reproductive and Respiratory Syndrome Virus Impedes STING Translocation from the Endoplasmic Reticulum to the Golgi Apparatus by Deubiquitinating STIM1 Feifei Diao, Juan Bai, Chenlong Jiang, Yangyang Sun, Yanni Gao, Hans Nauwynck, et al. (+3)
408 [GO] Microbiology Spectrum 2023―Apr―10 Persistence of Pneumococcal Carriage among Older Adults in the Community despite COVID-19 Mitigation Measures Anne L. Wyllie, Sidiya Mbodj, Darani A. Thammavongsa, Maikel S. Hislop, Devyn Yolda-Carr, Pari Waghela, et al. (+15)
409 [GO] mBio 2023―Apr―10 SARS-CoV-2 Variant Pathogenesis Following Primary Infection and Reinfection in Syrian Hamsters Jessica Plunkard, Kathleen Mulka, Ruifeng Zhou, Patrick Tarwater, William Zhong, Margaret Lowman, et al. (+5)
410 [GO] Microbiology Spectrum 2023―Apr―06 SARS-CoV-2 Inhibits NRF2-Mediated Antioxidant Responses in Airway Epithelial Cells and in the Lung of a Murine Model of Infection Yue Qu, Aline Haas de Mello, Dorothea R. Morris, Yava L. Jones-Hall, Teodora Ivanciuc, Rachel A. Sattler, et al. (+5)
411 [GO] Microbiology Spectrum 2023―Apr―06 Intertwined Dysregulation of Ribosomal Proteins and Immune Response Delineates SARS-CoV-2 Vaccination Breakthroughs Ranjeet Maurya, Uzma Shamim, Pallavi Mishra, Aparna Swaminathan, Aakarshan Raina, Bansidhar Tarai, et al. (+3)
412 [GO] Microbiology Spectrum 2023―Apr―03 Regional Evaluation of Two SARS-CoV-2 Antigen Rapid Diagnostic Tests in East Africa Muna Affara, Hakim Idris Lagu, Emmanuel Achol, Neema Omari, Grace Ochido, Eric Kezakarayagwa, et al. (+24)
413 [GO] mBio 2023―Apr―03 Evolution of Immune Evasion and Host Range Expansion by the SARS-CoV-2 B.1.1.529 (Omicron) Variant Wenlin Ren, Yu Zhang, Juhong Rao, Ziyi Wang, Jun Lan, Kunpeng Liu, et al. (+9)
414 [GO] Microbiology Spectrum 2023―Mar―30 Amuvatinib Blocks SARS-CoV-2 Infection at the Entry Step of the Viral Life Cycle Trang T. X. Huynh, Thuy X. Pham, Gun-Hee Lee, Jae-Bong Lee, Sung-Geun Lee, Dongseob Tark, et al. (+3)
415 [GO] Microbiology Spectrum 2023―Mar―28 Diagnostic Sensitivity of Saliva and Other Respiratory Tract Samples of SARS-CoV-2 Variants in Patients with COVID-19 Merlin Jayalal Lawrence Panchali, Choon-Mee Kim, Yu-Mi Lee, Jun-Won Seo, Da Young Kim, Na Ra Yun, et al. (+2)
416 [GO] Microbiology Spectrum 2023―Mar―28 Genomic Characterization of Carbapenem-Resistant Acinetobacter baumannii (CRAB) in Mechanically Ventilated COVID-19 Patients and Impact of Infection Control Measures on Reducing CRAB Circulation during the Second Wave of the SARS-CoV-2 Pandemic in Milan, Italy Davide Mangioni, Valeria Fox, Liliane Chatenoud, Matteo Bolis, Nicola Bottino, Lisa Cariani, et al. (+13)
417 [GO] Antimicrobial Agents and Chemotherapy 2023―Mar―28 Inhibition of Human Coronaviruses by Combinations of Host-Targeted and Direct-Acting Antivirals Patricia de León, Rodrigo Cañas-Arranz, María José Bustos, Margarita Sáiz, Francisco Sobrino
418 [GO] Microbiology Spectrum 2023―Mar―28 Implementation and Evaluation of the Clear Dx Platform for Sequencing SARS-CoV-2 Genomes in a Public Health Laboratory Arunachalam Ramaiah, Manjeet Khubbar, Samantha Scott, Amy Bauer, Jennifer Lentz, Katherine Akinyemi, et al. (+5)
419 [GO] Microbiology Spectrum 2023―Mar―28 Building-Level Detection Threshold of SARS-CoV-2 in Wastewater Nicole C. Rondeau, Oliver J. Rose, Ellen R. Alt, Lina A. Ariyan, Annabelle B. Elikan, Jenna L. Everard, et al. (+9)
420 [GO] Applied and Environmental Microbiology 2023―Mar―28 Monitoring Enteroviruses and SARS-CoV-2 in Wastewater Using the Polio Environmental Surveillance System in Japan Kazuhiro Kitakawa, Kouichi Kitamura, Hiromu Yoshida, Nicole R. Buan
421 [GO] mBio 2023―Mar―28 BCG Vaccination of Health Care Workers Does Not Reduce SARS-CoV-2 Infections nor Infection Severity or Duration: a Randomized Placebo-Controlled Trial Juana Claus, Thijs ten Doesschate, Cheyenne Gumbs, Cornelis H. van Werkhoven, Thomas W. van der Vaart, Axel B. Janssen, et al. (+36)
422 [GO] Microbiology Spectrum 2023―Mar―28 Assessment of QuantuMDx Q-POC Assay for Rapid Detection of SARS-CoV-2 Using Middle Turbinate Swabs Mariana Fernandez-Pittol, Juan Carlos Hurtado, Maryam Ali, Álvar Simarro, Fadiana Proaño, Maria Sierra, et al. (+2)
423 [GO] Microbiology Spectrum 2023―Mar―23 The COVID-19 Pandemic Sparked Off a Large-Scale Outbreak of Carbapenem-Resistant Acinetobacter baumannii from the Endemic Strains at an Italian Hospital Greta Petazzoni, Greta Bellinzona, Cristina Merla, Marta Corbella, Vincenzina Monzillo, Ørjan Samuelsen, et al. (+5)
424 [GO] Microbiology Spectrum 2023―Mar―22 COVID-19-Associated Pulmonary Aspergillosis Isolates Are Genomically Diverse but Similar to Each Other in Their Responses to Infection-Relevant Stresses Matthew E. Mead, Patrícia Alves de Castro, Jacob L. Steenwyk, Jean-Pierre Gangneux, Martin Hoenigl, Juergen Prattes, et al. (+12)
425 [GO] Microbiology Spectrum 2023―Mar―22 Ancestral SARS-CoV-2-Driven Antibody Repertoire Diversity in an Unvaccinated Individual Correlates with Expanded Neutralization Breadth Suprit Deshpande, Mohammed Yousuf Ansari, Jyoti Sutar, Payel Das, Nitin Hingankar, Sohini Mukherjee, et al. (+24)
426 [GO] Microbiology Spectrum 2023―Mar―21 Comparison of Reverse Transcription (RT)-Quantitative PCR and RT-Droplet Digital PCR for Detection of Genomic and Subgenomic SARS-CoV-2 RNA Sara Morón-López, Eva Riveira-Muñoz, Victor Urrea, Lucia Gutiérrez-Chamorro, Carlos Ávila-Nieto, Marc Noguera-Julian, et al. (+7)
427 [GO] Microbiology Spectrum 2023―Mar―21 Discovery of Brassica Yellows Virus and Porcine Reproductive and Respiratory Syndrome Virus in Diaphorina citri and Changes in Virome Due to Infection with ‘ Ca . L. asiaticus’ Jinming Lu, Lixia Zeng, Paul Holford, George A. C. Beattie, Yanjing Wang, Daifeng Cheng
428 [GO] Journal of Virology 2023―Mar―21 PSMB4 Degrades the Porcine Reproductive and Respiratory Syndrome Virus Nsp1α Protein via the Autolysosome Pathway and Induces the Production of Type I Interferon Heyou Yi, Qiumei Wang, Lechen Lu, Ruirui Ye, Ermin Xie, Zhiqing Yu, et al. (+9)
429 [GO] Journal of Microbiology and Biology Education 2023―Mar―16 COVID-19 Scientific Literacy in Medical and Nursing Students Maria Cabreja-Castillo, Leislany Hernandez, Alicia Mustafa, Gregory Hungria, Maria T. Bertoli, Nicole C. Kelp
430 [GO] Microbiology Spectrum 2023―Mar―16 Development, Validation, and Utilization of a Luminex-Based SARS-CoV-2 Multiplex Serology Assay Daisy R. Roy, Troy J. Kemp, Katarzyna Haynesworth, Sarah A. Loftus, Ligia A. Pinto, Gemma Moncunill
431 [GO] Microbiology Spectrum 2023―Mar―14 Oral Administration of Universal Bacterium-Vectored Nucleocapsid-Expressing COVID-19 Vaccine is Efficacious in Hamsters Qingmei Jia, Helle Bielefeldt-Ohmann, Rachel M. Maison, Airn Hartwig, Saša Masleša-Galić, Richard A. Bowen, et al. (+2)
432 [GO] Microbiology Spectrum 2023―Mar―14 Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic Govind Prasad Sah, Grace Kovalick, Jessica Chopyk, Peiting Kuo, Lina Huang, Pooja Ghatbale, et al. (+6)
433 [GO] Microbiology Spectrum 2023―Mar―14 Transmission of SARS-CoV-2 Omicron Variant under a Dynamic Clearance Strategy in Shandong, China Yifei Xu, Ti Liu, Yan Li, Xuemin Wei, Zhaoguo Wang, Ming Fang, et al. (+15)
434 [GO] Microbiology Spectrum 2023―Mar―14 Impaired Humoral Immunity Identified in Inactivated SARS-CoV-2 Vaccine Recipients without Anti-Spike RBD Antibodies Ting Sun, Yuchen Wang, Xiaoyu Song, Ruili Li, Fanghua Mei, Mengliu Yang, et al. (+12)
435 [GO] Journal of Virology 2023―Mar―14 The Genetic Variation of Porcine Reproductive and Respiratory Syndrome Virus Replicase Protein nsp2 Modulates Viral Virulence and Persistence Can Kong, Dan Li, Yanxin Hu, Peng Gao, Yongning Zhang, Lei Zhou, et al. (+5)
436 [GO] Microbiology Spectrum 2023―Mar―13 A Synthetic SARS-CoV-2-Derived T-Cell and B-Cell Peptide Cocktail Elicits Full Protection against Lethal Omicron BA.1 Infection in H11-K18-hACE2 Mice Yang Song, Hongqiao Hu, Kang Xiao, Xinghu Huang, Hong Guo, Yuqing Shi, et al. (+10)
437 [GO] Journal of Virology 2023―Mar―10 A critical analysis of the evidence for the SARS-CoV-2 origin hypotheses James C. Alwine, Arturo Casadevall, Lynn W. Enquist, Felicia D. Goodrum, Michael J. Imperiale
438 [GO] mBio 2023―Mar―10 A critical analysis of the evidence for the SARS-CoV-2 origin hypotheses James C. Alwine, Arturo Casadevall, Lynn W. Enquist, Felicia D. Goodrum, Michael J. Imperiale
439 [GO] mSphere 2023―Mar―10 A critical analysis of the evidence for the SARS-CoV-2 origin hypotheses James C. Alwine, Arturo Casadevall, Lynn W. Enquist, Felicia D. Goodrum, Michael J. Imperiale
440 [GO] mBio 2023―Mar―09 SARS-CoV-2 Exposure in Norway Rats (Rattus norvegicus) from New York City Yang Wang, Julianna Lenoch, Dennis Kohler, Thomas J. DeLiberto, Cynthia Y. Tang, Tao Li, et al. (+7)
441 [GO] Journal of Virology 2023―Mar―06 Bat-Origin Swine Acute Diarrhea Syndrome Coronavirus Is Lethal to Neonatal Mice Yueyue Duan, Cong Yuan, Xuepeng Suo, Yanhua Li, Lei Shi, Liyan Cao, et al. (+5)
442 [GO] Microbiology Spectrum 2023―Mar―06 Short-Lived Antibody-Mediated Saliva Immunity against SARS-CoV-2 after Vaccination Johannes Roth Madsen, Bettina Eide Holm, Laura Pérez-Alós, Rafael Bayarri-Olmos, Anne Rosbjerg, Kamille Fogh, et al. (+13)
443 [GO] Microbiology Spectrum 2023―Mar―06 A Rapid Method for Generating Infectious SARS-CoV-2 and Variants Using Mutagenesis and Circular Polymerase Extension Cloning Beom Kyu Kim, Won-Suk Choi, Ju Hwan Jeong, Sol Oh, Ji-Hyun Park, Yu Soo Yun, et al. (+9)
444 [GO] Microbiology Spectrum 2023―Mar―06 Molecular Characterization of AZD7442 (Tixagevimab-Cilgavimab) Neutralization of SARS-CoV-2 Omicron Subvariants Tiffany L. Roe, Tyler Brady, Nicolette Schuko, Amy Nguyen, Jagadish Beloor, Johnathan D. Guest, et al. (+7)
445 [GO] Journal of Virology 2023―Mar―06 SARS-CoV-2 ORF8 Protein Induces Endoplasmic Reticulum Stress-like Responses and Facilitates Virus Replication by Triggering Calnexin: an Unbiased Study Xuefeng Wang, Wenqi Wang, Tiecheng Wang, Jianzhong Wang, Yuhang Jiang, Xue Wang, et al. (+9)
446 [GO] mSystems 2023―Mar―02 The Coming of Age of Nucleic Acid Vaccines during COVID-19 Halie M. Rando, Ronan Lordan, Likhitha Kolla, Elizabeth Sell, Alexandra J. Lee, Nils Wellhausen, et al. (+56)
447 [GO] Microbiology Spectrum 2023―Mar―02 A Randomized Clinical Trial Testing Hydroxychloroquine for Reduction of SARS-CoV-2 Viral Shedding and Hospitalization in Early Outpatient COVID-19 Infection Adam M. Spivak, Bradley J. Barney, Tom Greene, Richard Holubkov, Cody S. Olsen, Jordan Bridges, et al. (+8)
448 [GO] mSystems 2023―Mar―02 Application of Traditional Vaccine Development Strategies to SARS-CoV-2 Halie M. Rando, Ronan Lordan, Alexandra J. Lee, Amruta Naik, Nils Wellhausen, Elizabeth Sell, et al. (+56)
449 [GO] Applied and Environmental Microbiology 2023―Mar―01 Laboratory Evaluation of a Quaternary Ammonium Compound-Based Antimicrobial Coating Used in Public Transport during the COVID-19 Pandemic Paz Aranega-Bou, Natalie Brown, Abigail Stigling, Wilhemina D’Costa, Neville Q. Verlander, Thomas Pottage, et al. (+3)
450 [GO] Microbiology Spectrum 2023―Feb―28 Integrated Metabolic and Inflammatory Signatures Associated with Severity of, Fatality of, and Recovery from COVID-19 Luiz Gustavo Gardinassi, Carolina do Prado Servian, Gesiane da Silva Lima, Déborah Carolina Carvalho dos Anjos, Antonio Roberto Gomes Junior, Adriana Oliveira Guilarde, et al. (+21)
451 [GO] mSphere 2023―Feb―28 Unique Genomic Epidemiology of COVID-19 in the White Mountain Apache Tribe, April to August 2020, Arizona Jolene R. Bowers, Hayley D. Yaglom, Crystal M. Hepp, Ashlyn Pfeiffer, Daniel Jasso-Selles, Nicole Bratsch, et al. (+12)
452 [GO] Microbiology Spectrum 2023―Feb―28 Performance Evaluation of Four Qualitative RT-PCR Assays for the Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Riffat Munir, Lesley Erica Scott, Lara Dominique Noble, Kim Steegen, Lucia Hans, Wendy Susan Stevens, Clinton J. Jones
453 [GO] mBio 2023―Feb―28 SARS-CoV-2 SUD2 and Nsp5 Conspire to Boost Apoptosis of Respiratory Epithelial Cells via an Augmented Interaction with the G-Quadruplex of BclII Ying Li, Quanwei Yu, Ridong Huang, Hai Chen, Hequan Ren, Lingling Ma, et al. (+3)
454 [GO] Journal of Virology 2023―Feb―27 All Domains of SARS-CoV-2 nsp1 Determine Translational Shutoff and Cytotoxicity of the Protein Ilya Frolov, Tatiana Agback, Oksana Palchevska, Francisco Dominguez, Alexander Lomzov, Peter Agback, et al. (+2)
455 [GO] Microbiology Spectrum 2023―Feb―27 A Beta Strain-Based Spike Glycoprotein Vaccine Candidate Induces Broad Neutralization and Protection against SARS-CoV-2 Variants of Concern Lei Cao, Jinyuan Guo, Hai Li, Hu Ren, Kang Xiao, Yan Zhang, et al. (+16)
456 [GO] mBio 2023―Feb―23 Reduced Mortality among COVID-19 ICU Patients after Treatment with HemoClear Convalescent Plasma in Suriname R. Bihariesingh-Sanchit, R. Bansie, N. Ramdhani, R. Mangroo, D. Bustamente, E. Diaz, et al. (+8)
457 [GO] Applied and Environmental Microbiology 2023―Feb―23 Bioaccumulation Pattern of the SARS-CoV-2 Spike Proteins in Pacific Oyster Tissues Chenang Lyu, Ran An, Chu Liu, Zhentao Shi, Yanfei Wang, Guangda Luo, et al. (+3)
458 [GO] Microbiology Spectrum 2023―Feb―23 Porcine Reproductive and Respiratory Syndrome Virus nsp5 Induces Incomplete Autophagy by Impairing the Interaction of STX17 and SNAP29 Yanrong Zhou, Yang Li, Ran Tao, Jia Li, Liurong Fang, Shaobo Xiao, Biao He
459 [GO] Microbiology Spectrum 2023―Feb―22 Evaluation of Environmental Stability and Disinfectant Effectiveness for Human Coronavirus OC43 on Human Skin Surface Naoto Watanabe, Ryohei Hirose, Katsuma Yamauchi, Hajime Miyazaki, Risa Bandou, Takuma Yoshida, et al. (+12)
460 [GO] Journal of Clinical Microbiology 2023―Feb―21 Metagenomic Next-Generation Sequencing of Plasma for Diagnosis of COVID-19-Associated Pulmonary Aspergillosis Martin Hoenigl, Matthias Egger, Jessica Price, Robert Krause, Juergen Prattes, P. Lewis White, Kimberly E. Hanson
461 [GO] Microbiology Spectrum 2023―Feb―21 Trajectory of Humoral Responses to Two Doses of ChAdOx1 nCoV-19 Vaccination in Patients Receiving Maintenance Hemodialysis Tsai-Chieh Ling, Po-Lin Chen, Nan-Yao Li, Wen-Chien Ko, Chien-Yao Sun, Jo-Yen Chao, et al. (+8)
462 [GO] Microbiology Spectrum 2023―Feb―21 Antibodies to Nucleocapsid Are Not Diagnostic for Long COVID C. T. Brandt, L. Wiese, K. M. Christiansen, J. Agergaard, Holly Ramage
463 [GO] Journal of Virology 2023―Feb―15 Cytoplasmic Tail Truncation Stabilizes S1-S2 Association and Enhances S Protein Incorporation into SARS-CoV-2 Pseudovirions Lizhou Zhang, Nancy Hom, Amrita Ojha, Klaus N. Lovendahl, Huihui Mou, Kelly K. Lee, et al. (+2)
464 [GO] mBio 2023―Feb―14 Strategy To Assess Zoonotic Potential Reveals Low Risk Posed by SARS-Related Coronaviruses from Bat and Pangolin Yong Yang, Xu-Rui Shen, Yu-Lan Zhang, Ren-di Jiang, Xi Wang, Zhen-Qiong Guan, et al. (+12)
465 [GO] mBio 2023―Feb―14 High-Throughput Neutralization and Serology Assays Reveal Correlated but Highly Variable Humoral Immune Responses in a Large Population of Individuals Infected with SARS-CoV-2 in the US between March and August 2020 Shuting Zhang, Peijun Ma, Marek Orzechowski, Allison Lemmer, Kara Rzasa, Josephine Bagnall, et al. (+25)
466 [GO] mBio 2023―Feb―14 Intra-Host Evolution Provides for the Continuous Emergence of SARS-CoV-2 Variants Justin T. Landis, Razia Moorad, Linda J. Pluta, Carolina Caro-Vegas, Ryan P. McNamara, Anthony B. Eason, et al. (+9)
467 [GO] Microbiology Spectrum 2023―Feb―14 Emergence of Pandemic Clonal Lineage Sequence Types 131 and 69 of Extraintestinal Escherichia coli as a Cause of Meningitis: Is It Time To Revise Molecular Assays? Maria Antonia De Francesco, Anna Bertelli, Silvia Corbellini, Erika Scaltriti, Francesco Risso, Roberto Allegri, et al. (+4)
468 [GO] Microbiology Spectrum 2023―Feb―14 Reply to Brandt et al., “Antibodies to Nucleocapsid Are Not Diagnostic for Long COVID” Kamille Fogh, Peter Garred, Cecilie B. Hansen, Kasper K. Iversen, Holly Ramage
469 [GO] Journal of Virology 2023―Feb―13 Immunity to Seasonal Coronavirus Spike Proteins Does Not Protect from SARS-CoV-2 Challenge in a Mouse Model but Has No Detrimental Effect on Protection Mediated by COVID-19 mRNA Vaccination Fatima Amanat, Jordan Clark, Juan Manuel Carreño, Shirin Strohmeier, Temima Yellin, Philip S. Meade, et al. (+7)
470 [GO] Microbiology Spectrum 2023―Feb―13 Differences in Immune Responses in Individuals of Indian and European Origin: Relevance for the COVID-19 Pandemic Büsra Geckin, Martijn Zoodsma, Gizem Kilic, Priya A. Debisarun, Srabanti Rakshit, Vasista Adiga, et al. (+11)
471 [GO] Journal of Virology 2023―Feb―13 Deletion of the s2m RNA Structure in the Avian Coronavirus Infectious Bronchitis Virus and Human Astrovirus Results in Sequence Insertions Sarah Keep, Giulia Dowgier, Valeria Lulla, Paul Britton, Michael Oade, Graham Freimanis, et al. (+5)
472 [GO] Microbiology Resource Announcements 2023―Feb―13 Severe Acute Respiratory Syndrome Coronavirus-2 Lambda Variant Collected from a Child from Arkansas and Sequenced Lori Wong, Christopher Randolph, Emily Kanwischer, Ashton Ingold, Bobby L. Boyanton, Jay Taylor, et al. (+12)
473 [GO] Journal of Virology 2023―Feb―13 Transferrin Receptor Protein 1 Cooperates with mGluR2 To Mediate the Internalization of Rabies Virus and SARS-CoV-2 Xinxin Wang, Zhiyuan Wen, Huizhen Cao, Jie Luo, Lei Shuai, Chong Wang, et al. (+5)
474 [GO] Microbiology Spectrum 2023―Feb―13 Performance of the GeneSoC Rapid PCR System in Detection of SARS-CoV-2 from Saliva Specimens Kenji Ota, Ryo Kurahara, Chie Tsukamoto, Yasuhide Kawamoto, Norihiko Akamatsu, Daisuke Sasaki, et al. (+9)
475 [GO] Microbiology Resource Announcements 2023―Feb―13 Coding-Complete Genome Sequences of 40 SARS-CoV-2 Omicron XBB, XBB.1, and XBB.2 Sublineage Strains in Bangladesh Mohammad Tanbir Habib, Mokibul Hassan Afrad, Saikt Rahman, Manjur Hossain Khan, Mohammad Moajjam Hossain, Farhana Khanam, et al. (+4)
476 [GO] Microbiology Spectrum 2023―Feb―08 Assessment of Level of Depression and Associated Factors among COVID-19-Recovered Patients: a Cross-Sectional Study Khadeza Khatun, Nasreen Farhana, Clinton J. Jones
477 [GO] Journal of Virology 2023―Feb―07 Erratum for Lin et al., “Longitudinal Assessment of SARS-CoV-2-Specific T Cell Cytokine-Producing Responses for 1 Year Reveals Persistence of Multicytokine Proliferative Responses, with Greater Immunity Associated with Disease Severity” Jonah Lin, Ryan Law, Chapin S. Korosec, Christine Zhou, Wan Hon Koh, Mohammad Sajjad Ghaemi, et al. (+16)
478 [GO] mBio 2023―Feb―06 Guild-Level Microbiome Signature Associated with COVID-19 Severity and Prognosis Mingquan Guo, Guojun Wu, Yun Tan, Yan Li, Xin Jin, Weiqiang Qi, et al. (+5)
479 [GO] Microbiology Spectrum 2023―Feb―06 Single Amino Acid Substitution in the Receptor Binding Domain of Spike Protein Is Sufficient To Convert the Neutralization Profile between Ethiopian and Middle Eastern Isolates of Middle East Respiratory Coronavirus Satoko Sugimoto, Masatoshi Kakizaki, Miyuki Kawase, Kengo Kawachi, Makoto Ujike, Wataru Kamitani, et al. (+3)
480 [GO] mBio 2023―Feb―02 Siglec-9 Restrains Antibody-Dependent Natural Killer Cell Cytotoxicity against SARS-CoV-2 Pratima Saini, Opeyemi S. Adeniji, Devivasha Bordoloi, Jennifer Kinslow, Jeff Martinson, Danielle M. Parent, et al. (+14)
481 [GO] mSphere 2023―Feb―02 Mouse-Adapted SARS-CoV-2 MA10 Strain Displays Differential Pulmonary Tropism and Accelerated Viral Replication, Neurodissemination, and Pulmonary Host Responses in K18-hACE2 Mice Côme J. Thieulent, Wellesley Dittmar, Udeni B. R. Balasuriya, Nicholas A. Crossland, Xue Wen, Juergen A. Richt, et al. (+2)
482 [GO] Microbiology Spectrum 2023―Feb―01 Respiratory Virus Infections during the COVID-19 Pandemic Revealed by Multiplex PCR Testing in Japan Sho Yamashita, Satoshi Ikegame, Keita Nakatomi, Yuko Sakurai, Hiroe Shuto, Noriko Sato, et al. (+6)
483 [GO] Microbiology Spectrum 2023―Feb―01 Beyond Costs: Pragmatic Considerations for Pooling of SARS-CoV-2 Test Samples for Nursing Home Surveillance Gabrielle M. Gussin, Raveena D. Singh, Delia F. Tifrea, Thomas Tjoa, Cassiana E. Bittencourt, Robert A. Edwards, et al. (+3)
484 [GO] Journal of Virology 2023―Feb―01 SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3 Craig Schindewolf, Kumari Lokugamage, Michelle N. Vu, Bryan A. Johnson, Dionna Scharton, Jessica A. Plante, et al. (+13)
485 [GO] Journal of Virology 2023―Jan―31 Trimeric, APC-Targeted Subunit Vaccines Protect Mice against Seasonal and Pandemic Influenza Elias Tjärnhage, Diamond Brown, Bjarne Bogen, Tor Kristian Andersen, Gunnveig Grødeland, Kanta Subbarao
486 [GO] Microbiology Spectrum 2023―Jan―25 mRNA Vaccine Mitigates SARS-CoV-2 Infections and COVID-19 Christina M. Kackos, Sherri L. Surman, Bart G. Jones, Robert E. Sealy, Trushar Jeevan, Christopher J. H. Davitt, et al. (+7)
487 [GO] mSphere 2023―Jan―25 Low Viral Diversity Limits the Effectiveness of Sequence-Based Transmission Inference for SARS-CoV-2 Mireille Farjo, Christopher B. Brooke
488 [GO] Microbiology Spectrum 2023―Jan―25 N-Acetyltransferase 9 Inhibits Porcine Reproductive and Respiratory Syndrome Virus Proliferation by N-Terminal Acetylation of the Structural Protein GP5 Xiaoyang Li, Ruiqi Sun, Yanyu Guo, Huixia Zhang, Ruyu Xie, Xubin Fu, et al. (+5)
489 [GO] Microbiology Spectrum 2023―Jan―23 Impact of COVID-19 on the Epidemiological Features of Mycoplasma pneumoniae Infection in Children with Community-Acquired Pneumonia in Henan, China Lifeng Li, Pengbo Guo, Jiayue Ma, Huiqing Sun, Shiyue Mei, Tulip A. Jhaveri
490 [GO] Microbiology Spectrum 2023―Jan―23 Quantification of Severe Acute Respiratory Syndrome Coronavirus 2 Binding Antibody Levels To Assess Infection and Vaccine-Induced Immunity Using WHO Standards Olivier Pernet, Steven Balog, Eric S. Kawaguchi, Chun Nok Lam, Patricia Anthony, Paul Simon, et al. (+5)
491 [GO] mSphere 2023―Jan―23 Dynamics of Different Classes and Subclasses of Antibody Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Variants after Coronavirus Disease 2019 and CoronaVac Vaccination in Thailand Prapassorn Poolchanuan, Wasin Matsee, Sineenart Sengyee, Tanaya Siripoon, Adul Dulsuk, Rungnapa Phunpang, et al. (+5)
492 [GO] Microbiology Spectrum 2023―Jan―23 Ancestral Lineage of SARS-CoV-2 Is More Stable in Human Biological Fluids than Alpha, Beta, and Omicron Variants of Concern Taeyong Kwon, Natasha N. Gaudreault, David A. Meekins, Chester D. McDowell, Konner Cool, Juergen A. Richt, Daniel R. Perez
493 [GO] Journal of Virology 2023―Jan―23 A SARS-CoV-2-Related Virus from Malayan Pangolin Causes Lung Infection without Severe Disease in Human ACE2-Transgenic Mice Mei-Qin Liu, Hao-Feng Lin, Jing Li, Ying Chen, Yun Luo, Wei Zhang, et al. (+13)
494 [GO] Microbiology Spectrum 2023―Jan―19 Stability of the COVID-19 At-Home Test after Exposure to Extreme Temperatures Erin Gick, Stephen McCune, Jamie P. Deeter, Heba H. Mostafa
495 [GO] Microbiology Spectrum 2023―Jan―19 Evaluation of the Rapid Antigen Detection Test for Diagnosing SARS-CoV-2 during the COVID-19 Pandemic: Experience from a Centralized Isolation Site in Shanghai, China Xu Zhong, Li Zhang, Di Ma, Yingying Shi, Jiayin Wu, Xiaosheng Xu, et al. (+9)
496 [GO] mSphere 2023―Jan―19 SARS-CoV-2 Antibody Prevalence among Industrial Livestock Operation Workers and Nearby Community Residents, North Carolina, 2021 to 2022 Carolyn Gigot, Nora Pisanic, Kate Kruczynski, Magdielis Gregory Rivera, Kristoffer Spicer, Kathleen M. Kurowski, et al. (+8)
497 [GO] Journal of Virology 2023―Jan―19 Mucosal Gene Expression in Response to SARS-CoV-2 Is Associated with Viral Load Seesandra V. Rajagopala, Britton A. Strickland, Suman B. Pakala, Kyle S. Kimura, Meghan H. Shilts, Christian Rosas-Salazar, et al. (+9)
498 [GO] Microbiology Spectrum 2023―Jan―18 Standardization of SARS-CoV-2 Cycle Threshold Values: Multisite Investigation Evaluating Viral Quantitation across Multiple Commercial COVID-19 Detection Platforms Kenneth Gavina, Lauren C. Franco, Christopher M. Robinson, Weston Hymas, Guang-Sheng Lei, Will Sinclair, et al. (+9)
499 [GO] Microbiology Spectrum 2023―Jan―18 Aptamer-Assisted Proximity Ligation Assay for Sensitive Detection of Infectious Bronchitis Coronavirus Issam Hmila, Boutheina Marnissi, Masood Kamali-Moghaddam, Abdeljelil Ghram, Daniel R. Perez
500 [GO] Journal of Virology 2023―Jan―18 A Heterologous Challenge Rescues the Attenuated Immunogenicity of SARS-CoV-2 Omicron BA.1 Variant in Syrian Hamster Model Jian Ma, Xuan Liu, Ming Zhou, Peiwen Chen, Rirong Chen, Jia Wang, et al. (+11)
501 [GO] mBio 2023―Jan―18 Do SARS-CoV-2 Variants Differ in Their Neuropathogenicity? Lisa Bauer, Debby van Riel
502 [GO] Microbiology Spectrum 2023―Jan―16 Impact of COVID-19 Nonpharmaceutical Interventions on Pneumococcal Carriage Prevalence and Density in Vietnam Monica Larissa Nation, Sam Manna, Hau Phuc Tran, Cattram Duong Nguyen, Le Thi Tuong Vy, Doan Y. Uyen, et al. (+13)
503 [GO] Microbiology Spectrum 2023―Jan―16 Trends in the Rates of Extended-Spectrum-β-Lactamase-Producing Enterobacterales Isolated from Urine Cultures during the COVID-19 Pandemic in Ontario, Canada Mohammad R. Hasan, Yasmeen M. Vincent, Daniela Leto, Huda Almohri, Sandeep Tamber
504 [GO] Journal of Virology 2023―Jan―12 Impact of Reinfection with SARS-CoV-2 Omicron Variants in Previously Infected Hamsters Nozomi Shiwa-Sudo, Yusuke Sakai, Naoko Iwata-Yoshikawa, Shinji Watanabe, Souichi Yamada, Yudai Kuroda, et al. (+12)
505 [GO] Microbiology Spectrum 2023―Jan―11 Rapid Assessment of SARS-CoV-2 Variant-Associated Mutations in Wastewater Using Real-Time RT-PCR Kata Farkas, Cameron Pellett, Rachel Williams, Natasha Alex-Sanders, Irene Bassano, Mathew R. Brown, et al. (+10)
506 [GO] mBio 2023―Jan―10 Endemic Human Coronavirus Antibody Levels Are Unchanged after Convalescent or Control Plasma Transfusion for Early Outpatient COVID-19 Treatment Andrew H. Karaba, Trevor S. Johnston, Evan Beck, Oliver Laeyendecker, Andrea L. Cox, Sabra L. Klein, et al. (+61)
507 [GO] mBio 2023―Jan―10 The Substitutions L50F, E166A, and L167F in SARS-CoV-2 3CLpro Are Selected by a Protease Inhibitor In Vitro and Confer Resistance To Nirmatrelvir Dirk Jochmans, Cheng Liu, Kim Donckers, Antitsa Stoycheva, Sandro Boland, Sarah K. Stevens, et al. (+20)
508 [GO] Microbiology Spectrum 2023―Jan―10 Rapid and Flexible RT-qPCR Surveillance Platforms To Detect SARS-CoV-2 Mutations Katja Spiess, Vithiagaran Gunalan, Ellinor Marving, Sofie Holdflod Nielsen, Michelle G. P. Jørgensen, Anna S. Fomsgaard, et al. (+13)
509 [GO] Microbiology Spectrum 2023―Jan―10 Cross-Canada Variability in Blood Donor SARS-CoV-2 Seroprevalence by Social Determinants of Health Sheila F. O’Brien, Niamh Caffrey, Qi-Long Yi, Shelly Bolotin, Naveed Z. Janjua, Mawuena Binka, et al. (+8)
510 [GO] mSphere 2023―Jan―10 SARS-CoV-2 Transmission from Virus-Infected Dead Hamsters Kiyoko Iwatsuki-Horimoto, Hiroshi Ueki, Mutsumi Ito, Sayaka Nagasawa, Yuichiro Hirata, Kenichiro Hashizume, et al. (+9)
511 [GO] Microbiology Spectrum 2023―Jan―10 Epitranscriptomic N 6 -Methyladenosine Profile of SARS-CoV-2-Infected Human Lung Epithelial Cells Stacia Phillips, Tarun Mishra, Shaubhagya Khadka, Dana Bohan, Constanza E. Espada, Wendy Maury, et al. (+2)
512 [GO] mBio 2023―Jan―10 SARS-CoV-2-Mediated Lung Edema and Replication Are Diminished by Cystic Fibrosis Transmembrane Conductance Regulator Modulators Jose M. Honrubia, Javier Gutierrez-Álvarez, Alejandro Sanz-Bravo, Ezequiel González-Miranda, Diego Muñoz-Santos, Carlos Castaño-Rodriguez, et al. (+12)
513 [GO] Microbiology Spectrum 2023―Jan―09 Use of Self-Collected Dried Blood Spots and a Multiplex Microsphere Immunoassay to Measure IgG Antibody Response to COVID-19 Vaccines Katherine L. Nemeth, Erica Yauney, Jean M. Rock, Rachel Bievenue, Monica M. Parker, Linda M. Styer, Tulip A. Jhaveri
514 [GO] Microbiology Spectrum 2023―Jan―09 SARS-CoV-2 Harnesses Host Translational Shutoff and Autophagy To Optimize Virus Yields: the Role of the Envelope (E) Protein Hope Waisner, Brandon Grieshaber, Rabina Saud, Wyatt Henke, Edward B. Stephens, Maria Kalamvoki, Saumitra Das
515 [GO] mBio 2023―Jan―09 Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA Matthew F. Smith, Steven C. Holland, Mihyun B. Lee, James C. Hu, Nghia C. Pham, Regan A. Sullins, et al. (+15)
516 [GO] Microbiology Spectrum 2023―Jan―09 Rapid and Visual Detection of SARS-CoV-2 RNA Based on Reverse Transcription-Recombinase Polymerase Amplification with Closed Vertical Flow Visualization Strip Assay Yumeng Song, Pei Huang, Mengtao Yu, Yuanguo Li, Hongli Jin, Jiazhang Qiu, et al. (+5)
517 [GO] Microbiology Spectrum 2023―Jan―09 Genomic Analysis of the Suspicious SARS-CoV-2 Sequences in the Public Sequencing Database Xiao Sun, Chuanwen Kan, Wentai Ma, Zhenglin Du, Mingkun Li, Feng Gao
518 [GO] Microbiology Spectrum 2023―Jan―09 Comprehensive Comparison of Seven SARS-CoV-2-Specific Surrogate Virus Neutralization and Anti-Spike IgG Antibody Assays Using a Live-Virus Neutralization Assay as a Reference Marianne Graninger, Claudia Maria Jani, Elisabeth Reuberger, Katja Prüger, Philipp Gaspar, David Niklas Springer, et al. (+10)
519 [GO] Microbiology Spectrum 2023―Jan―05 Human Endogenous Retrovirus (HERV) Transcriptome Is Dynamically Modulated during SARS-CoV-2 Infection and Allows Discrimination of COVID-19 Clinical Stages Nicole Grandi, Maria Chiara Erbì, Sante Scognamiglio, Enzo Tramontano, Takamasa Ueno
520 [GO] Microbiology Spectrum 2023―Jan―05 Longevity and Neutralizing Capacity of IgG Antibodies against SARS-CoV-2 Generated by the Application of BNT162b2, AZD1222, Convidecia, Sputnik V, and CoronaVac Vaccines: a Cohort Study in the Mexican Population Larissa Fernandes-Matano, Angel Gustavo Salas-Lais, Concepción Grajales-Muñiz, Mauricio Hernández-Ávila, Yonathan Omar Garfias-Becerra, Mario César Rodríguez-Sepúlveda, et al. (+10)
521 [GO] Microbiology Spectrum 2023―Jan―05 Validation and Establishment of the SARS-CoV-2 Lentivirus Surrogate Neutralization Assay as a Prescreening Tool for the Plaque Reduction Neutralization Test John Merluza, Johnny Ung, Kai Makowski, Alyssia Robinson, Kathy Manguiat, Nicole Mueller, et al. (+6)
522 [GO] Antimicrobial Agents and Chemotherapy 2023―Jan―05 Atypical Mutational Spectrum of SARS-CoV-2 Replicating in the Presence of Ribavirin Pilar Somovilla, Carlos García-Crespo, Brenda Martínez-González, María Eugenia Soria, Ana Isabel de Ávila, Isabel Gallego, et al. (+15)
523 [GO] Journal of Virology 2023―Jan―05 PSMB1 Inhibits the Replication of Porcine Reproductive and Respiratory Syndrome Virus by Recruiting NBR1 To Degrade Nonstructural Protein 12 by Autophagy Liwei Li, Yuanzhe Bai, Yanjun Zhou, Yifeng Jiang, Wu Tong, Guoxin Li, et al. (+4)
524 [GO] mSphere 2023―Jan―04 Experimental Infection of Mexican Free-Tailed Bats ( Tadarida brasiliensis ) with SARS-CoV-2 J. S. Hall, E. Hofmeister, H. S. Ip, S. W. Nashold, A. E. Leon, C. M. Malavé, et al. (+6)
525 [GO] Microbiology Spectrum 2022―Dec―22 A Cross-Sectional Study of SARS-CoV-2 Antibodies and Risk Factors for Seropositivity in Staff in Day Care Facilities and Preschools in Denmark Kamille Fogh, Alexandra R. R. Eriksen, Tine Graakjær Larsen, Rasmus B. Hasselbalch, Henning Bundgaard, Bibi F. S. S. Scharff, et al. (+31)
526 [GO] Antimicrobial Agents and Chemotherapy 2022―Dec―15 Prophylactic Administration of the Monoclonal Antibody Adintrevimab Protects against SARS-CoV-2 in Hamster and Non-Human Primate Models of COVID-19 Elizabeth E. Zumbrun, Chengzi I. Kaku, Lukas Dillinger, Samantha E. Zak, Ana I. Kuehne, Russel R. Bakken, et al. (+11)
527 [GO] Microbiology Spectrum 2022―Dec―15 Performance Evaluation of Five Rapid At-Home COVID-19 Antigen Tests against the Omicron Variant Victor A. Sugiharto, Stephanie K. Gatrell, Hua-Wei Chen, Gabrielle R. Blazek, Amanda M. Cherry, Megan Schilling, Tulip A. Jhaveri
528 [GO] Antimicrobial Agents and Chemotherapy 2022―Dec―14 A Double-Blind, Randomized, Placebo-Controlled, Phase II Clinical Study To Evaluate the Efficacy and Safety of Camostat Mesylate (DWJ1248) in Adult Patients with Mild to Moderate COVID-19 Yeon-Sook Kim, Seng-Ho Jeon, Junghee Kim, Jong Hoon Koh, Seung Won Ra, Ji Won Kim, et al. (+28)
529 [GO] Microbiology Spectrum 2022―Dec―14 Influx of Backyard Farming with Limited Biosecurity Due to the COVID-19 Pandemic Carries an Increased Risk of Zoonotic Spillover in Cambodia Sudipta Hyder, Benjamin L. Sievers, Claude Flamand, Damian TagoPacheco, Malen Chan, Filip Claes, et al. (+2)
530 [GO] Microbiology Spectrum 2022―Dec―13 Three Amino Acid Substitutions in the Spike Protein Enable the Coronavirus Porcine Epidemic Diarrhea Virus To Infect Vero Cells Bingqing Chen, Shijuan Dong, Li Yu, Fusheng Si, Chunhua Li, Chunfang Xie, et al. (+3)
531 [GO] Applied and Environmental Microbiology 2022―Dec―13 Virucidal Activities of Acidic Electrolyzed Water Solutions with Different pH Values against Multiple Strains of SARS-CoV-2 Yohei Takeda, Masaru Nikaido, Dulamjav Jamsransuren, Sachiko Matsuda, Haruko Ogawa, Nicole R. Buan
532 [GO] Microbiology Spectrum 2022―Dec―13 Novel Affibody Molecules Specifically Bind to SARS-CoV-2 Spike Protein and Efficiently Neutralize Delta and Omicron Variants Wangqi Du, Peipei Jiang, Qingfeng Li, He Wen, Maolin Zheng, Jing Zhang, et al. (+11)
533 [GO] mSystems 2022―Dec―12 A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants Jack Albright, Eran Mick, Estella Sanchez-Guerrero, Jack Kamm, Anthea Mitchell, Angela M. Detweiler, et al. (+10)
534 [GO] Microbiology Resource Announcements 2022―Dec―12 Genome Sequences of SARS-CoV-2 Strains from the Republic of Moldova Mariana Ulinici, Martín Soñora, Emanuele Orsini, Danilo Licastro, Simeone Dal Monego, Mihail Todiras, et al. (+4)
535 [GO] Microbiology Spectrum 2022―Dec―08 Sotrovimab in Hospitalized Patients with SARS-CoV-2 Omicron Variant Infection: a Propensity Score-Matched Retrospective Cohort Study Marcel S. Woo, Thomas Theo Brehm, Marlene Fischer, Andreas Heyer, Dominic Wichmann, Sabine Jordan, et al. (+8)
536 [GO] Microbiology Resource Announcements 2022―Dec―06 Genome Sequences of 23 SARS-CoV-2 Omicron-Lineage Strains from Bangladesh Mohabbat Hossain, Omar Hamza Bin Manjur, Lincon Hasda, Mohammad Tanbir Habib, Mokibul Hassan Afrad, Manjur Hossain Khan, et al. (+12)
537 [GO] mBio 2022―Dec―05 Correction for Zhou et al., “Neutralization Titers in Vaccinated Patients with SARS-CoV-2 Delta Breakthrough Infections” Jing Zou, Xuping Xie, Mingru Liu, Pei-Yong Shi, Ping Ren
538 [GO] Journal of Virology 2022―Dec―05 Sertraline Is an Effective SARS-CoV-2 Entry Inhibitor Targeting the Spike Protein Yuliu Chen, Yan Wu, Shaoying Chen, Qingping Zhan, Dingzhou Wu, Chan Yang, et al. (+17)
539 [GO] Microbiology Spectrum 2022―Dec―01 Direct Nasal Swab for Rapid Test and Saliva as an Alternative Biological Sample for RT-PCR in COVID-19 Diagnosis Saiful Arefeen Sazed, Mohammad Golam Kibria, Md Fahad Zamil, Mohammad Sharif Hossain, Jeba Zaman Khan, Rifat Tasnim Juthi, et al. (+6)
540 [GO] Microbiology Spectrum 2022―Dec―01 Clinical SARS-CoV-2 Kinetic Profiles Are Dependent on the Viral Strain and Host Vaccination Status Manjula Gunawardana, John M. Cortez, Jessica Breslin, Simon Webster, Nash D. Rochman, Peter A. Anton, et al. (+2)
541 [GO] Microbiology Spectrum 2022―Nov―30 Multicenter Diagnostic Evaluation of a Novel Coronavirus Antigen Lateral Flow Test among Symptomatic Individuals in Brazil and the United Kingdom Debora S. Faffe, Rachel L. Byrne, Richard Body, Terezinha Marta P. Castiñeiras, Anna P. Castiñeiras, Lorna S. Finch, et al. (+48)
542 [GO] Journal of Virology 2022―Nov―30 Different Mechanisms Are Utilized by Coronavirus Transmissible Gastroenteritis Virus To Regulate Interferon Lambda 1 and Interferon Lambda 3 Production Mei Xue, Wenzhe Wang, Haojie He, Liang Li, Xin Zhang, Hongyan Shi, et al. (+3)
543 [GO] Microbiology Resource Announcements 2022―Nov―30 Genome Sequence of a Recombinant SARS-CoV-2 Lineage XAM (BA.1.1/BA.2.9) Strain from a Clinical Sample in Santo Domingo, Dominican Republic Robert Paulino-Ramírez, Kien Pham, Mallery I. Breban, Armando Peguero, Maridania Jabier, Nelissa Sánchez, et al. (+5)
544 [GO] mSphere 2022―Nov―30 Epidemiological and Genomic Analysis of a Large SARS-CoV-2 Outbreak in a Long-Term Care Facility in Catalonia, Spain Antoni E. Bordoy, Xavier Vallès, Anna Not, Álvaro Chiner-Oms, Verónica Saludes, Judit Torres Cervós, et al. (+16)
545 [GO] Journal of Virology 2022―Nov―30 Neuromasts and Olfactory Organs of Zebrafish Larvae Represent Possible Sites of SARS-CoV-2 Pseudovirus Host Cell Entry Sheyne S. A. Choi, Ho Hin Chan, Ching Man Chan, Xiaoyang Wang, Sarah E. Webb, Ka Wing Leung, et al. (+3)
546 [GO] Journal of Virology 2022―Nov―30 Detection of Airborne Influenza A and SARS-CoV-2 Virus Shedding following Ocular Inoculation of Ferrets Jessica A. Belser, Xiangjie Sun, Troy J. Kieran, Nicole Brock, Joanna A. Pulit-Penaloza, Claudia Pappas, et al. (+7)
547 [GO] Microbiology Spectrum 2022―Nov―29 Development and Validation of a Novel COVID-19 nsp8 One-Tube RT-LAMP-CRISPR Assay for SARS-CoV-2 Diagnosis Cyril Chik-Yan Yip, Siddharth Sridhar, Wan-Mui Chan, Jonathan Daniel Ip, Allen Wing-Ho Chu, Kit-Hang Leung, et al. (+4)
548 [GO] Microbiology Spectrum 2022―Nov―29 Outbreak of Klebsiella pneumoniae ST11 Resistant To Ceftazidime-Avibactam Producing KPC-31 and the Novel Variant KPC-115 during COVID-19 Pandemic in Argentina Federico Nicola, Daniela Cejas, Francisco González-Espinosa, Silvia Relloso, Fabián Herrera, Pablo Bonvehí, et al. (+5)
549 [GO] Microbiology Spectrum 2022―Nov―29 Anti-Arbovirus Antibodies Cross-React With Severe Acute Respiratory Syndrome Coronavirus 2 Taweewun Hunsawong, Darunee Buddhari, Kamonthip Rungrojcharoenkit, Rungarun Suthangkornkul, Duangrat Mongkolsirichaikul, Jindarat Lohachanakul, et al. (+11)
550 [GO] Journal of Clinical Microbiology 2022―Nov―29 Sensitivity of Detection and Variant Typing of SARS-CoV-2 in European Laboratories Ramona Mögling, Carlo Fischer, Kamelia R. Stanoeva, Angeliki Melidou, Angélica C. Almeida Campos, Christian Drosten, et al. (+6)
551 [GO] Microbiology Spectrum 2022―Nov―29 Defective Interfering Particles with Broad-Acting Antiviral Activity for Dengue, Zika, Yellow Fever, Respiratory Syncytial and SARS-CoV-2 Virus Infection Min-Hsuan Lin, Dongsheng Li, Bing Tang, Li Li, Andreas Suhrbier, David Harrich, Tao Deng
552 [GO] Microbiology Spectrum 2022―Nov―23 Time Course Evaluation of Enzyme-Linked Immunosorbent Assays Based on Cell-Free Recombinant Proteins for Detection of Antibodies against Middle East Respiratory Syndrome Coronavirus Jun Won Kim, Woo-Jung Park, Sung Soon Kim, Joo-Yeon Lee, Jeong-Sun Yang, Susan Realegeno
553 [GO] Microbiology Spectrum 2022―Nov―23 Porcine Reproductive and Respiratory Syndrome Virus nsp1β Stabilizes HIF-1α to Enhance Viral Replication Yu Pang, Yanrong Zhou, Yuchen Wang, Zheng Sun, Jiao Liu, Chenyu Li, et al. (+3)
554 [GO] Microbiology Spectrum 2022―Nov―21 SARS-CoV-2 Anti-Spike IgG Antibody and ACE2 Receptor Binding Inhibition Levels among Breakthrough Stage Veteran Patients Stephen W. Chensue, Andrew F. Siler, Paul S. Kim, Derek E. Dimcheff, David J. Daghfal, John Prostko, et al. (+4)
555 [GO] Microbiology Spectrum 2022―Nov―21 Clinical Performance of Direct RT-PCR Testing of Raw Saliva for Detection of SARS-CoV-2 in Symptomatic and Asymptomatic Individuals Rosa Castillo-Bravo, Noel Lucca, Linyi Lai, Killian Marlborough, Galina Brychkova, Maryam Shideh Sakhteh, et al. (+13)
556 [GO] Journal of Microbiology and Biology Education 2022―Nov―21 Primer Design for Reverse Transcription-Quantitative PCR Simulation: an Online Lab Exercise Using a SARS-CoV-2 Model Gwantwa Mwakalundwa, Susan Bush Tripp, Cheryl Dvorak, Dawn Foster-Hartnett, Laura J. MacDonald
557 [GO] Microbiology Spectrum 2022―Nov―21 Tracing the First Days of the SARS-CoV-2 Pandemic in Greece and the Role of the First Imported Group of Travelers Maria Bousali, Vasiliki Pogka, Giannis Vatsellas, Theodoros Loupis, Emmanouil I. Athanasiadis, Katerina Zoi, et al. (+5)
558 [GO] Journal of Virology 2022―Nov―21 Erratum for Tan et al., “Dissecting Naturally Arising Amino Acid Substitutions at Position L452 of SARS-CoV-2 Spike” Toong Seng Tan, Mako Toyoda, Hirotaka Ode, Godfrey Barabona, Hiroshi Hamana, Mizuki Kitamatsu, et al. (+4)
559 [GO] Microbiology Spectrum 2022―Nov―21 Two-Period Study Results from a Large Italian Hospital Laboratory Attesting SARS-CoV-2 Variant PCR Assay Evolution Flora Marzia Liotti, Flavio De Maio, Chiara Ippoliti, Giulia Santarelli, Francesca Romana Monzo, Michela Sali, et al. (+5)
560 [GO] Microbiology Spectrum 2022―Nov―21 Global Phylogeny and F Virulence Plasmid Carriage in Pandemic Escherichia coli ST1193 Ethan R. Wyrsch, Rhys N. Bushell, Marc S. Marenda, Glenn F. Browning, Steven P. Djordjevic, Cheryl P. Andam
561 [GO] mBio 2022―Nov―16 Inactivated Vaccine-Induced SARS-CoV-2 Variant-Specific Immunity in Children Jorge A. Soto, Felipe Melo-González, Cristián Gutierrez-Vera, Bárbara M. Schultz, Roslye V. Berríos-Rojas, Daniela Rivera-Pérez, et al. (+131)
562 [GO] Microbiology Spectrum 2022―Nov―15 Selection of Ideal Reference Genes for Gene Expression Analysis in COVID-19 and Mucormycosis Sunil Kumar, Ayaan Ahmad, Namrata Kushwaha, Niti Shokeen, Sheetal Negi, Kamini Gautam, et al. (+9)
563 [GO] mSphere 2022―Nov―15 SARS-CoV-2 Genomic Diversity in Households Highlights the Challenges of Sequence-Based Transmission Inference Emily E. Bendall, Gabriela Paz-Bailey, Gilberto A. Santiago, Christina A. Porucznik, Joseph B. Stanford, Melissa S. Stockwell, et al. (+9)
564 [GO] Antimicrobial Agents and Chemotherapy 2022―Nov―14 Lancemaside A from Codonopsis lanceolata: Studies on Antiviral Activity and Mechanism of Action against SARS-CoV-2 and Its Variants of Concern Tai Young Kim, Sangeun Jeon, Meehyun Ko, Young Eun Du, So-Ri Son, Dae Sik Jang, et al. (+2)
565 [GO] Microbiology Spectrum 2022―Nov―14 Serum Fc-Mediated Monocyte Phagocytosis Activity Is Stable for Several Months after SARS-CoV-2 Asymptomatic and Mildly Symptomatic Infection Sindhu Vangeti, Sivakumar Periasamy, Peifang Sun, Corey A. Balinsky, Avinash S. Mahajan, Natalia A. Kuzmina, et al. (+22)
566 [GO] Microbiology Resource Announcements 2022―Nov―14 Coding Complete Genome Sequence of the SARS-CoV-2 Virus Strain, Variant B.1.1, Sampled from Kazakhstan Yerbol Burashev, Bekbolat Usserbayev, Lespek Kutumbetov, Yergali Abduraimov, Markhabat Kassenov, Aslan Kerimbayev, et al. (+6)
567 [GO] Microbiology Spectrum 2022―Nov―10 Genetic Study of SARS-CoV-2 Non Structural Protein 12 in COVID-19 Patients Non Responders to Remdesivir Marta Santos Bravo, Rodrigo Alonso, Dafne Soria, Sonsoles Sánchez Palomino, Ángela Sanzo Machuca, Cristina Rodríguez, et al. (+20)
568 [GO] Microbiology Spectrum 2022―Nov―10 Molecular Characteristics and Pathogenicity of a Novel Recombinant Porcine Reproductive and Respiratory Syndrome Virus Strain from NADC30-, NADC34-, and JXA1-Like Strains That Emerged in China Jiankui Liu, Chen Liu, Ye Xu, Yuan Yang, Jiarui Li, Ailing Dai, et al. (+4)
569 [GO] Microbiology Spectrum 2022―Nov―09 Self-Reported Long COVID and Its Association with the Presence of SARS-CoV-2 Antibodies in a Danish Cohort up to 12 Months after Infection Kamille Fogh, Tine Graakjær Larsen, Cecilie B. Hansen, Rasmus B. Hasselbalch, Alexandra R. R. Eriksen, Henning Bundgaard, et al. (+8)
570 [GO] Journal of Virology 2022―Nov―09 The P681H Mutation in the Spike Glycoprotein of the Alpha Variant of SARS-CoV-2 Escapes IFITM Restriction and Is Necessary for Type I Interferon Resistance Maria Jose Lista, Helena Winstone, Harry D. Wilson, Adam Dyer, Suzanne Pickering, Rui Pedro Galao, et al. (+12)
571 [GO] Microbiology Spectrum 2022―Nov―09 Limited Impact of SARS-CoV-2 on the Human Naso-Oropharyngeal Microbiota in Hospitalized Patients Christopher K. C. Lai, Man Kit Cheung, Grace C. Y. Lui, Lowell Ling, Jason Y. K. Chan, Rita W. Y. Ng, et al. (+7)
572 [GO] Microbiology Spectrum 2022―Nov―08 Detection of SARS-CoV-2 in Saliva and Nasopharyngeal Swabs According to Viral Variants Maud Salmona, Marie-Laure Chaix, Linda Feghoul, Nadia Mahjoub, Sarah Maylin, Nathalie Schnepf, et al. (+12)
573 [GO] Microbiology Spectrum 2022―Nov―08 Comparison of Nasopharyngeal and Saliva Swab Nucleic Acid Amplification and Rapid Antigen Testing To Detect Omicron SARS-CoV-2 Variant of Concern: a Prospective Clinical Trial (OMICRON) Antonios Kritikos, Giorgia Caruana, Catherine Lazor-Blanchet, Michael Currat, Jean-Daniel Chiche, Peter Vollenweider, et al. (+4)
574 [GO] Microbiology Spectrum 2022―Nov―07 Use of a Bacterial Artificial Chromosome to Generate Recombinant SARS-CoV-2 Expressing Robust Levels of Reporter Genes Chengjin Ye, Luis Martinez-Sobrido, Daniel R. Perez
575 [GO] Journal of Virology 2022―Nov―07 Analysis of the Prevalence of Binding and Neutralizing Antibodies against 39 Human Adenovirus Types in Student Cohorts Reveals Low-Prevalence Types and a Decline in Binding Antibody Levels during the SARS-CoV-2 Pandemic Xiaoyan Wang, Leonie Kerkmann, Mario Hetzel, Sonja Windmann, Mirko Trilling, Wenli Zhang, et al. (+3)
576 [GO] Microbiology Spectrum 2022―Nov―07 Rapid SARS-CoV-2 Variants Enzymatic Detection (SAVED) by CRISPR-Cas12a Jun Yang, Nilakshi Barua, Md Nannur Rahman, Carmen Li, Norman Lo, Kai Yan Yeong, et al. (+9)
577 [GO] mBio 2022―Nov―03 Inhalation of Low Molecular Weight Heparins as Prophylaxis against SARS-CoV-2 Julia Eder, Marta Bermejo-Jambrina, Killian E. Vlaming, Tanja M. Kaptein, Viktoria Zaderer, E. Marleen Kemper, et al. (+6)
578 [GO] Microbiology Spectrum 2022―Nov―03 Ubiquitination of SARS-CoV-2 ORF7a Prevents Cell Death Induced by Recruiting BclXL To Activate ER Stress Zhixin Liu, Yanan Fu, Yanping Huang, Feng Zeng, Jingjing Rao, Xiao Xiao, et al. (+7)
579 [GO] mSphere 2022―Nov―02 Mucosal and Systemic Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination Determined by Severity of Primary Infection Mohammad M. Sajadi, Amber Myers, James Logue, Saman Saadat, Narjes Shokatpour, James Quinn, et al. (+12)
580 [GO] Microbiology Spectrum 2022―Nov―01 Kappa Values in Testing the Concordance: Comments on a Recent Article about Nasopharyngeal Swabs for SARS-CoV-2 Detection Ming Li, Chi Zhang, Tianfei Yu, Eleanor A. Powell
581 [GO] Microbiology Spectrum 2022―Nov―01 Reply to Li et al., “Kappa Values in Testing the Concordance: Comments on a Recent Article about Nasopharyngeal Swabs for SARS-CoV-2 Detection” Cody Callahan, Sarah Ditelberg, Sanjucta Dutta, Nancy Littlehale, Annie Cheng, Kristin Kupczewski, et al. (+5)
582 [GO] Microbiology Spectrum 2022―Nov―01 Omicron Wave SARS-CoV-2 Diagnosis: Evaluation of Saliva, Anterior Nasal, and Nasopharyngeal Swab Samples Marion Migueres, Jean-Michel Mansuy, Sandrine Vasseur, Nicolas Claverie, Catherine Lougarre, Françoise Soulier, et al. (+3)
583 [GO] Microbiology Spectrum 2022―Nov―01 Characterization and Function of Glycans on the Spike Proteins of SARS-CoV-2 Variants of Concern Luping Zheng, Ke Wang, Minghai Chen, Fujun Qin, Chuang Yan, Xian-En Zhang, Holly Ramage
584 [GO] Microbiology Spectrum 2022―Nov―01 Antigenic Characterization and Pandemic Risk Assessment of North American H1 Influenza A Viruses Circulating in Swine Divya Venkatesh, Tavis K. Anderson, J. Brian Kimble, Jennifer Chang, Sara Lopes, Carine K. Souza, et al. (+7)
585 [GO] Microbiology Spectrum 2022―Oct―31 Serum Proteomic Analysis for New Types of Long-Term Persistent COVID-19 Patients in Wuhan Cuidan Li, Liya Yue, Yingjiao Ju, Jie Wang, Mengfan Chen, Hao Lu, et al. (+11)
586 [GO] Microbiology Spectrum 2022―Oct―31 Impact of Sex and Age on mRNA COVID-19 Vaccine-Related Side Effects in Japan Masahiko Mori, Aiko Yokoyama, Ayami Shichida, Kimiko Sasuga, Takafumi Maekawa, Tadayoshi Moriyama, Daniela S. Rajao
587 [GO] Microbiology Spectrum 2022―Oct―31 Generation of Angiotensin-Converting Enzyme 2/Transmembrane Protease Serine 2-Double-Positive Human Induced Pluripotent Stem Cell-Derived Spheroids for Anti-Severe Acute Respiratory Syndrome Coronavirus 2 Drug Evaluation Nobuyo Higashi-Kuwata, Shigeharu G. Yabe, Satsuki Fukuda, Junko Nishida, Miwa Tamura-Nakano, Shin-ichiro Hattori, et al. (+3)
588 [GO] Journal of Virology 2022―Oct―31 Retraction for Siu et al., “Middle East Respiratory Syndrome Coronavirus 4a Protein Is a Double-Stranded RNA-Binding Protein That Suppresses PACT-Induced Activation of RIG-I and MDA5 in the Innate Antiviral Response” Kam-Leung Siu, Man Lung Yeung, Kin-Hang Kok, Kit-San Yuen, Chun Kew, Pak-Yin Lui, et al. (+5)
589 [GO] Journal of Virology 2022―Oct―31 Retraction for Lau et al., “Coexistence of Different Genotypes in the Same Bat and Serological Characterization of Rousettus Bat Coronavirus HKU9 Belonging to a Novel Betacoronavirus Subgroup” Susanna K. P. Lau, Rosana W. S. Poon, Beatrice H. L. Wong, Ming Wang, Yi Huang, Huifang Xu, et al. (+7)
590 [GO] Journal of Virology 2022―Oct―31 Retraction for Woo et al., “Discovery of a Novel Bottlenose Dolphin Coronavirus Reveals a Distinct Species of Marine Mammal Coronavirus in Gammacoronavirus ” Patrick C. Y. Woo, Susanna K. P. Lau, Carol S. F. Lam, Alan K. L. Tsang, Suk-Wai Hui, Rachel Y. Y. Fan, et al. (+2)
591 [GO] mBio 2022―Oct―31 Commentary on “Outcomes of Convalescent Plasma with Defined High versus Lower Neutralizing Antibody Titers against SARS-CoV-2 among Hospitalized Patients: CoronaVirus Inactivating Plasma (CoVIP) Study” Michael J. Joyner, Nigel Paneth
592 [GO] Journal of Clinical Microbiology 2022―Oct―31 Retraction for Woo et al., “False-Positive Results in a Recombinant Severe Acute Respiratory Syndrome-Associated Coronavirus (SARS-CoV) Nucleocapsid Enzyme-Linked Immunosorbent Assay Due to HCoV-OC43 and HCoV-229E Rectified by Western Blotting with Recombinant SARS-CoV Spike Polypeptide” Patrick C. Y. Woo, Susanna K. P. Lau, Beatrice H. L. Wong, Kwok-Hung Chan, Wai-Ting Hui, Grace S. W. Kwan, et al. (+3)
593 [GO] mBio 2022―Oct―31 Neuropilin-1 Mediates SARS-CoV-2 Infection of Astrocytes in Brain Organoids, Inducing Inflammation Leading to Dysfunction and Death of Neurons Weili Kong, Mauricio Montano, Michael J. Corley, Ekram Helmy, Hirofumi Kobayashi, Martin Kinisu, et al. (+8)
594 [GO] Microbiology Spectrum 2022―Oct―31 HCV Infection Increases the Expression of ACE2 Receptor, Leading to Enhanced Entry of Both HCV and SARS-CoV-2 into Hepatocytes and a Coinfection State Tom Domovitz, Samer Ayoub, Michal Werbner, Joel Alter, Lee Izhaki Tavor, Yfat Yahalom-Ronen, et al. (+8)
595 [GO] Journal of Clinical Microbiology 2022―Oct―31 Analytical Sensitivity of Lateral Flow Devices against SARS-CoV-2 Omicron Subvariants BA.4, BA.5, and BA.2.75 Charlene Mackenzie, Mitchell Batty, Georgina Papadakis, Laura Stevens, Yano Yoga, George Taiaroa, et al. (+9)
596 [GO] Journal of Clinical Microbiology 2022―Oct―31 SARS-CoV-2 Transmission from Human to Pet and Suspected Transmission from Pet to Human, Thailand Chutchai Piewbang, Panida Poonsin, Pattiya Lohavicharn, Sabrina Wahyu Wardhani, Wichan Dankaona, Jiratchaya Puenpa, et al. (+3)
597 [GO] Microbiology Spectrum 2022―Oct―31 SARS-CoV-2: Challenges in Reconverting Diagnostic Laboratories to Combat the Pandemic Hugo Alberto Barrera Saldaña, Carolina Rivera Santiago, Raúl Rodríguez Palacios, Tulip A. Jhaveri
598 [GO] Microbiology Spectrum 2022―Oct―27 Secondary Bacterial Infections in Mucormycosis-COVID-19 Cases: Experience during the Second COVID-19 Wave in India Neha Sharad, Smriti Srivastava, Parul Singh, Mamta Puraswani, Sharad Srivastav, Rajesh Malhotra, et al. (+3)
599 [GO] Microbiology Spectrum 2022―Oct―27 Influenza Infection in Ferrets with SARS-CoV-2 Infection History Caroline Vilas Boas de Melo, Florence Peters, Harry van Dijken, Stefanie Lenz, Koen van de Ven, Lisa Wijsman, et al. (+6)
600 [GO] Microbiology Spectrum 2022―Oct―27 Screening of the Medicines for Malaria Venture Pandemic Response Box for Discovery of Antivirulent Drug against Pseudomonas aeruginosa Markéta Macho, Subhasish Saha, Grzegorz Konert, Avik Banerjee, Daniela Ewe, Pavel Hrouzek, et al. (+3)
601 [GO] Antimicrobial Agents and Chemotherapy 2022―Oct―26 Pharmacokinetics of Nirmatrelvir and Ritonavir in COVID-19 Patients with End-Stage Renal Disease on Intermittent Hemodialysis Tilman Lingscheid, Martina Kinzig, Anne Krüger, Nils Müller, Georg Bölke, Pinkus Tober-Lau, et al. (+6)
602 [GO] Applied and Environmental Microbiology 2022―Oct―26 MixviR: an R Package for Exploring Variation Associated with Genomic Sequence Data from Environmental SARS-CoV-2 and Other Mixed Microbial Samples Michael G. Sovic, Francesca Savona, Zuzana Bohrerova, Seth A. Faith, Nicole R. Buan
603 [GO] Microbiology Spectrum 2022―Oct―26 Evaluation of Four Strategies for SARS-CoV-2 Detection: Characteristics and Prospects Yuqing Chen, Yu Ma, Yanxi Han, Zhenli Diao, Lu Chang, Jinming Li, et al. (+2)
604 [GO] Microbiology Spectrum 2022―Oct―26 Morning SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher Viral Loads in Saliva and Nasal Swabs upon Waking Alexander Viloria Winnett, Michael K. Porter, Anna E. Romano, Emily S. Savela, Reid Akana, Natasha Shelby, et al. (+11)
605 [GO] Microbiology Resource Announcements 2022―Oct―19 Genome Sequence of Bovine Coronavirus Variants from the Nasal Virome of Irish Beef Suckler and Pre-weaned Dairy Calves Clinically Diagnosed with Bovine Respiratory Disease Kerrie Ní Dhufaigh, Matthew McCabe, Paul Cormican, Inmaculada Cuevas-Gomez, Mark McGee, Tara McDaneld, et al. (+2)
606 [GO] mBio 2022―Oct―18 Casirivimab and Imdevimab Treatment Reduces Viral Load and Improves Clinical Outcomes in Seropositive Hospitalized COVID-19 Patients with Nonneutralizing or Borderline Neutralizing Antibodies Andrea T. Hooper, Selin Somersan-Karakaya, Shane E. McCarthy, Eleftherios Mylonakis, Shazia Ali, Jingning Mei, et al. (+9)
607 [GO] Microbiology Spectrum 2022―Oct―18 Design and Implementation of Improved SARS-CoV-2 Diagnostic Assays To Mitigate the Impact of Genomic Mutations on Target Failure: the Xpert Xpress SARS-CoV-2 Experience Bethany L. Burns, Domonique Moody, Zheng Jin Tu, Joy Nakitandwe, Jay E. Brock, David Bosler, et al. (+4)
608 [GO] Microbiology Spectrum 2022―Oct―18 Comparison of BinaxNOW and SARS-CoV-2 qRT-PCR Detection of the Omicron Variant from Matched Anterior Nares Swabs Lena Landaverde, Jacquelyn Turcinovic, Lynn Doucette-Stamm, Kevin Gonzales, Judy Platt, John H. Connor, et al. (+2)
609 [GO] Microbiology Spectrum 2022―Oct―17 Using a 29-mRNA Host Response Classifier To Detect Bacterial Coinfections and Predict Outcomes in COVID-19 Patients Presenting to the Emergency Department Nikhil Ram-Mohan, Angela J. Rogers, Catherine A. Blish, Kari C. Nadeau, Elizabeth J. Zudock, David Kim, et al. (+53)
610 [GO] Microbiology Resource Announcements 2022―Oct―17 Genome Sequence of an Early Imported Case of SARS-CoV-2 Delta Variant (B.1.617.2 AY.122) in Iraq in April 2021 Nihad A. M. Al-Rashedi, Hussein Alburkat, Murad G. Munahi, Ali H. Jasim, Batool Kadham Salman, Basel Saber Oda, et al. (+6)
611 [GO] Microbiology Spectrum 2022―Oct―17 Estimation of SARS-CoV-2 Neutralizing Activity and Protective Immunity in Different Vaccine Types Using Three Surrogate Virus Neutralization Test Assays and Two Semiquantitative Binding Assays Targeting the Receptor-Binding Domain Beomki Lee, Jae-Hoon Ko, Kyoung Hwa Lee, Yong Chan Kim, Young Goo Song, Yoon Soo Park, et al. (+18)
612 [GO] Microbiology Spectrum 2022―Oct―13 Persistent Nonviral Plasmid Vector in Nasal Tissues Causes False-Positive SARS-CoV-2 Diagnostic Nucleic Acid Tests Ingrid A. Beck, Sheila Styrchak, Leslie Miller, Fred Mast, Vladimir Vigdorovich, Winnie Yeung, et al. (+15)
613 [GO] Journal of Microbiology and Biology Education 2022―Oct―13 A Lesson from the Pandemic: Utilizing Digital Tools To Support Student Engagement during Instructional Assistant-Led Sessions Christina N. Morra, Robert Fultz, Samiksha A. Raut, Pamela Ann Marshall
614 [GO] Microbiology Spectrum 2022―Oct―12 One-Year Follow-Up of COVID-19 Patients Indicates Substantial Assay-Dependent Differences in the Kinetics of SARS-CoV-2 Antibodies Alexander E. Egger, Sabina Sahanic, Andreas Gleiss, Franz Ratzinger, Barbara Holzer, Christian Irsara, et al. (+14)
615 [GO] mSphere 2022―Oct―11 SARS-CoV-2 RNA Is Readily Detectable at Least 8 Months after Shedding in an Isolation Facility David A. Coil, Randi Pechacek, Mo Kaze, Rogelio Zuniga-Montanez, Roque G. Guerrero, Jonathan A. Eisen, et al. (+3)
616 [GO] Microbiology Spectrum 2022―Oct―11 SARS-CoV-2-Neutralizing Humoral IgA Response Occurs Earlier but Is Modest and Diminishes Faster than IgG Response Yuki Takamatsu, Kazumi Omata, Yosuke Shimizu, Noriko Kinoshita-Iwamoto, Mari Terada, Tetsuya Suzuki, et al. (+6)
617 [GO] Microbiology Spectrum 2022―Oct―11 Attenuated Porcine Reproductive and Respiratory Syndrome Virus Regains Its Fatal Virulence by Serial Passaging in Pigs or Porcine Alveolar Macrophages To Increase Its Adaptation to Target Cells Jingjing Wang, Mengsi Zhang, Xiaochun Cui, Xiang Gao, Weifeng Sun, Xinna Ge, et al. (+6)
618 [GO] Microbiology Spectrum 2022―Oct―10 Erratum for Nikiforuk et al., “Performance of Immunoglobulin G Serology on Finger Prick Capillary Dried Blood Spot Samples to Detect a SARS-CoV-2 Antibody Response” Aidan M. Nikiforuk, Brynn McMillan, Sofia R. Bartlett, Ana Citlali Márquez, Tamara Pidduck, Jesse Kustra, et al. (+10)
619 [GO] Journal of Virology 2022―Oct―10 Dissecting Naturally Arising Amino Acid Substitutions at Position L452 of SARS-CoV-2 Spike Toong Seng Tan, Mako Toyoda, Hirotaka Ode, Godfrey Barabona, Hiroshi Hamana, Mizuki Kitamatsu, et al. (+5)
620 [GO] Microbiology Spectrum 2022―Oct―06 Superinfection with SARS-CoV-2 Has Deleterious Effects on Mycobacterium bovis BCG Immunity and Promotes Dissemination of Mycobacterium tuberculosis Rachel E. Hildebrand, Shaswath Sekar Chandrasekar, Mariah Riel, B뫊rr J. B. Touray, Sophie A. Aschenbroich, Adel M. Talaat, G. Marcela Rodriguez
621 [GO] mBio 2022―Oct―05 The Integral Membrane Protein ZMPSTE24 Protects Cells from SARS-CoV-2 Spike-Mediated Pseudovirus Infection and Syncytia Formation Khurts Shilagardi, Eric D. Spear, Rachy Abraham, Diane E. Griffin, Susan Michaelis, Michael S. Diamond
622 [GO] mBio 2022―Oct―03 Correction for Zhao et al., “Gasdermin D Inhibits Coronavirus Infection by Promoting the Noncanonical Secretion of Beta Interferon” Liyuan Zhao, Liang Li, Mei Xue, Xiang Liu, Chengfan Jiang, Wenzhe Wang, et al. (+3)
623 [GO] Microbiology Spectrum 2022―Oct―03 Combinations of Host- and Virus-Targeting Antiviral Drugs Confer Synergistic Suppression of SARS-CoV-2 Jessica Wagoner, Shawn Herring, Tien-Ying Hsiang, Aleksandr Ianevski, Scott B. Biering, Shuang Xu, et al. (+8)
624 [GO] Microbiology Spectrum 2022―Oct―03 Neutralizing SARS-CoV-2 Spike Antibodies against Omicron in Paired Samples after Two or Three Doses of mRNA Vaccine Amanda K. Debes, Shaoming Xiao, Emily R. Egbert, Patrizio Caturegli, Avinash Gadala, Elizabeth Colantuoni, et al. (+4)
625 [GO] mSphere 2022―Sep―29 Concordance of SARS-CoV-2 Antibody Results during a Period of Low Prevalence Cheryl N. Miller, Keri N. Althoff, David J. Schlueter, Hoda Anton-Culver, Qingxia Chen, Shawn Garbett, et al. (+14)
626 [GO] Microbiology Spectrum 2022―Sep―29 Interaction of HDAC2 with SARS-CoV-2 NSP5 and IRF3 Is Not Required for NSP5-Mediated Inhibition of Type I Interferon Signaling Pathway Nenavath Gopal Naik, See-Chi Lee, Beatriz H. S. Veronese, Zhe Ma, Zsolt Toth, Clinton J. Jones
627 [GO] Microbiology Spectrum 2022―Sep―28 Reverse Transcription-Loop-Mediated Isothermal Amplification-CRISPR-Cas13a Technology as a Promising Diagnostic Tool for SARS-CoV-2 Concha Ortiz-Cartagena, Laura Fernández-García, Lucia Blasco, Olga Pacios, Inés Bleriot, María López, et al. (+3)
628 [GO] Microbiology Spectrum 2022―Sep―28 Neutralization of SARS-CoV-2 Omicron and Delta Variants in Relation to Vaccine-Induced Antibody Levels in Kidney Transplant Recipients and Healthy Controls Rune M. Pedersen, Line L. Bang, Ditte S. Tornby, Helene Kierkegaard, Anna C. Nilsson, Isik S. Johansen, et al. (+9)
629 [GO] Microbiology Spectrum 2022―Sep―27 Infection and Transmission of SARS-CoV-2 B.1.617.2 Lineage (Delta Variant) among Fully Vaccinated Individuals Leonardo C. Caserta, Mathias Martins, Brittany Cronk, Renee Anderson, Harry Eldridge, Deidre Gallow, et al. (+4)
630 [GO] Microbiology Spectrum 2022―Sep―26 Randomized, Double-Blind, Placebo-Controlled Trial of a Throat Spray with Selected Lactobacilli in COVID-19 Outpatients Ilke De Boeck, Eline Cauwenberghs, Irina Spacova, Thies Gehrmann, Tom Eilers, Lize Delanghe, et al. (+18)
631 [GO] Microbiology Spectrum 2022―Sep―26 Multiplex PCR Detection of Respiratory Tract Infections in SARS-CoV-2-Negative Patients Admitted to the Emergency Department: an International Multicenter Study during the COVID-19 Pandemic Maelys Duclos, Benjamin Hommel, Florence Allantaz, Michaela Powell, Brunella Posteraro, Maurizio Sanguinetti, Maria Grazia Cusi
632 [GO] mBio 2022―Sep―22 Comparative Assessment of Severe Acute Respiratory Syndrome Coronavirus 2 Variants in the Ferret Model Joanna A. Pulit-Penaloza, Jessica A. Belser, Xiangjie Sun, Claudia Pappas, Nicole Brock, Troy J. Kieran, et al. (+11)
633 [GO] mBio 2022―Sep―22 Outcomes of Convalescent Plasma with Defined High versus Lower Neutralizing Antibody Titers against SARS-CoV-2 among Hospitalized Patients: CoronaVirus Inactivating Plasma (CoVIP) Study Luther A. Bartelt, Alena J. Markmann, Bridget Nelson, Jessica Keys, Heather Root, Heather I. Henderson, et al. (+16)
634 [GO] Microbiology Spectrum 2022―Sep―22 Association of Results of Four Lateral Flow Antibody Tests with Subsequent SARS-CoV-2 Infection Lucy Findlater, Adam Trickey, Hayley E. Jones, Amy Trindall, Sian Taylor-Phillips, Ranya Mulchandani, et al. (+3)
635 [GO] Journal of Clinical Microbiology 2022―Sep―21 Photo Quiz: Oral Finding in a 50-Year-Old Man Hospitalized for COVID-19 D. Dupont, J. C. Richard, M. Wallon, S. Debord-Peguet, F. Persat, Erik Munson
636 [GO] Microbiology Spectrum 2022―Sep―21 Comparison of SARS-CoV-2 Detection from Saliva Sampling and Oropharyngeal Swab Mia de Laurent Clemmensen, Kamilla Kolding Bendixen, Katharina Flugt, Pernille Pilgaard, Ulf Bech Christensen, Miguel Angel Martinez
637 [GO] mBio 2022―Sep―20 Building a Resilient Scientific Network for COVID-19 and Beyond N. Esther Babady, Rachel M. Burckhardt, Florian Krammer, Penny L. Moore, Lynn W. Enquist, Rino Rappuoli
638 [GO] Microbiology Spectrum 2022―Sep―20 Dual Monoclonal Antibodies on Sars-Cov-2 Alpha and Delta Variants: Clinical and Virological Efficacy Valentine Marie Ferré, Nathan Peiffer-Smadja, Laura Kramer, Romain Coppée, Aïcha Kante, Margaux Debarge, et al. (+11)
639 [GO] mBio 2022―Sep―20 SARS-CoV-2 Diverges from Other Betacoronaviruses in Only Partially Activating the IRE1α/XBP1 Endoplasmic Reticulum Stress Pathway in Human Lung-Derived Cells Long C. Nguyen, David M. Renner, Diane Silva, Dongbo Yang, Nicholas A. Parenti, Kaeri M. Medina, et al. (+20)
640 [GO] Microbiology Spectrum 2022―Sep―20 Utilization of the Abbott SARS-CoV-2 IgG II Quant Assay To Identify High-Titer Anti-SARS-CoV-2 Neutralizing Plasma against Wild-Type and Variant SARS-CoV-2 Viruses Yi-Chan J. Lin, David H. Evans, Ninette F. Robbins, Guillermo Orjuela, Queenie Hu, Reuben Samson, et al. (+9)
641 [GO] Microbiology Spectrum 2022―Sep―20 Decreased Sensitivity of Rapid Antigen Test Is Associated with a Lower Viral Load of Omicron than Delta SARS-CoV-2 Variant Théophile Cocherie, Mathilda Bastide, Soraya Sakhi, Karen Zafilaza, Philippe Flandre, Valentin Leducq, et al. (+7)
642 [GO] Microbiology Spectrum 2022―Sep―19 Longitudinal Serological Surveillance for COVID-19 Antibodies after Infection and Vaccination Christopher McGee, Min Shi, John House, Anna Drude, Gladys Gonzalez, Negin Martin, et al. (+13)
643 [GO] Journal of Virology 2022―Sep―19 The Spike-Stabilizing D614G Mutation Interacts with S1/S2 Cleavage Site Mutations To Promote the Infectious Potential of SARS-CoV-2 Variants Stacy Gellenoncourt, Nell Saunders, Rémy Robinot, Lucas Auguste, Maaran Michael Rajah, Jérôme Kervevan, et al. (+8)
644 [GO] Microbiology Spectrum 2022―Sep―19 Correlation of SARS-CoV-2 Viral Neutralizing Antibody Titers with Anti-Spike Antibodies and ACE-2 Inhibition among Vaccinated Individuals Brian Grunau, Martin Prusinkiewicz, Michael Asamoah-Boaheng, Liam Golding, Pascal M. Lavoie, Martin Petric, et al. (+9)
645 [GO] Microbiology Spectrum 2022―Sep―15 Accessible and Adaptable Multiplexed Real-Time PCR Approaches to Identify SARS-CoV-2 Variants of Concern Ting Yan, Ye Xu, Rongrong Zheng, Xiaohong Zeng, Zehui Chen, Su Lin, et al. (+5)
646 [GO] Applied and Environmental Microbiology 2022―Sep―14 Genetic Load of SARS-CoV-2 in Aerosols Collected in Operating Theaters María Barberá-Riera, Simona Porru, Manuela Barneo-Muñoz, Andrea Villasante Ferrer, Paula Carrasco, Rosa de Llanos, et al. (+3)
647 [GO] Antimicrobial Agents and Chemotherapy 2022―Sep―13 A Randomized Phase 2/3 Study of Ensitrelvir, a Novel Oral SARS-CoV-2 3C-Like Protease Inhibitor, in Japanese Patients with Mild-to-Moderate COVID-19 or Asymptomatic SARS-CoV-2 Infection: Results of the Phase 2a Part Hiroshi Mukae, Hiroshi Yotsuyanagi, Norio Ohmagari, Yohei Doi, Takumi Imamura, Takuhiro Sonoyama, et al. (+7)
648 [GO] Microbiology Spectrum 2022―Sep―13 Longitudinal Evaluation of the QuantiFERON-TB Gold Plus Assay in Hospitalized COVID-19 Patients with a First Indeterminate Result: Resolution of Inflammation and Restoration of T-Lymphocyte Counts and Interferon-Gamma Production Grazia Alessio, Alessandra Imeneo, Andrea Di Lorenzo, Benedetta Rossi, Chiara Sorace, Mirko Compagno, et al. (+9)
649 [GO] Antimicrobial Agents and Chemotherapy 2022―Sep―12 Safety, Tolerability, and Pharmacokinetics of the Novel Antiviral Agent Ensitrelvir Fumaric Acid, a SARS-CoV-2 3CL Protease Inhibitor, in Healthy Adults Ryosuke Shimizu, Takuhiro Sonoyama, Takahiro Fukuhara, Aya Kuwata, Yumiko Matsuo, Ryuji Kubota
650 [GO] Microbiology Spectrum 2022―Sep―08 SARS-CoV-2 Variant Delta Potently Suppresses Innate Immune Response and Evades Interferon-Activated Antiviral Responses in Human Colon Epithelial Cells Dixit Tandel, Vishal Sah, Nitesh Kumar Singh, Poojitha Sai Potharaju, Divya Gupta, Sauhard Shrivastava, et al. (+3)
651 [GO] Journal of Virology 2022―Sep―08 A New Long Noncoding RNA, MAHAT, Inhibits Replication of Porcine Reproductive and Respiratory Syndrome Virus by Recruiting DDX6 To Bind to ZNF34 and Promote an Innate Immune Response Yuming Liu, Xing Liu, Juan Bai, Yangyang Sun, Hans Nauwynck, Xianwei Wang, et al. (+3)
652 [GO] Journal of Virology 2022―Sep―07 A Recombinant VSV-Based Bivalent Vaccine Effectively Protects against Both SARS-CoV-2 and Influenza A Virus Infection Zhujun Ao, Maggie J. Ouyang, Titus A. Olukitibi, Bryce Warner, Robert Vendramelli, Thang Truong, et al. (+7)
653 [GO] Microbiology Spectrum 2022―Sep―07 Murine Hepatitis Virus, a Biosafety Level 2 Model for SARS-CoV-2, Can Remain Viable on Meat and Meat Packaging Materials for at Least 48 Hours Austin B. Featherstone, Amanda Claire Brown, Sapna Chitlapilly Dass, Sandeep Tamber
654 [GO] Microbiology Spectrum 2022―Sep―07 Time Series Analysis of SARS-CoV-2 Genomes and Correlations among Highly Prevalent Mutations Neha Periwal, Shravan B. Rathod, Sankritya Sarma, Gundeep S. Johar, Avantika Jain, Ravi P. Barnwal, et al. (+5)
655 [GO] Microbiology Spectrum 2022―Sep―07 B.1.351 SARS-CoV-2 Variant Exhibits Higher Virulence but Less Viral Shedding than That of the Ancestral Strain in Young Nonhuman Primates Yu Bai, Qian He, Jinghuan Yang, Shuaiyao Lu, Qunying Mao, Fan Gao, et al. (+12)
656 [GO] Microbiology Spectrum 2022―Sep―07 A Robust, Highly Multiplexed Mass Spectrometry Assay to Identify SARS-CoV-2 Variants Matthew M. Hernandez, Radhika Banu, Paras Shrestha, Ana S. Gonzalez-Reiche, Adriana van de Guchte, Keith Farrugia, et al. (+29)
657 [GO] Microbiology Spectrum 2022―Sep―07 Rapid Evaluation of Vaccine Booster Effectiveness against SARS-CoV-2 Variants Hoi Lok Cheng, Sing Mei Lim, Huan Jia, Ming Wei Chen, Say Yong Ng, Xiaohong Gao, et al. (+11)
658 [GO] Microbiology Spectrum 2022―Sep―06 A Multicenter Clinical Diagnostic Accuracy Study of SureStatus, an Affordable, WHO Emergency Use-Listed, Rapid, Point-Of-Care Antigen-Detecting Diagnostic Test for SARS-CoV-2 Lisa J. Krüger, Andreas K. Lindner, Mary Gaeddert, Frank Tobian, Julian Klein, Salome Steinke, et al. (+51)
659 [GO] mBio 2022―Aug―31 Correction for Merenstein et al., “Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome” Carter Merenstein, Guanxiang Liang, Samantha A. Whiteside, Ana G. Cobián-Güemes, Madeline S. Merlino, Louis J. Taylor, et al. (+15)
660 [GO] Microbiology Spectrum 2022―Aug―31 Versatile β-Catenin Is Crucial for SARS-CoV-2 Infection Sanchari Chatterjee, Supriya Suman Keshry, Soumyajit Ghosh, Amrita Ray, Soma Chattopadhyay, Saumitra Das
661 [GO] mSphere 2022―Aug―30 Aerosolized Hydrogen Peroxide Decontamination of N95 Respirators, with Fit-Testing and Viral Inactivation, Demonstrates Feasibility for Reuse during the COVID-19 Pandemic T. Hans Derr, Melissa A. James, Chad V. Kuny, Devanshi R. Patel, Prem P. Kandel, Cassandra Field, et al. (+6)
662 [GO] Journal of Virology 2022―Aug―30 SARS-CoV-2 Virus Culture, Genomic and Subgenomic RNA Load, and Rapid Antigen Test in Experimentally Infected Syrian Hamsters Cheng Zhang, Huan Cui, Zhendong Guo, Zhaoliang Chen, Fang Yan, Yuanguo Li, et al. (+4)
663 [GO] Microbiology Spectrum 2022―Aug―29 Comparison of the SARS-CoV-2 BD Veritor Nasal Antigen Test with Nasopharyngeal Reverse Transcription-PCR in Symptomatic Patients Paula Koga, Maira Maluf, Fabiane Nunes, Juliana Campos, Lívia Gazarini, Tatiane Borghoff, et al. (+3)
664 [GO] Journal of Clinical Microbiology 2022―Aug―29 Salivary IgAs and Their Role in Mucosal Neutralization of SARS-CoV-2 Variants of Concern Gabriel Diem, Eliott Lafon, Angelika Bauer, Cornelia Lass-Flörl, Markus Reindl, Doris Wilflingseder, et al. (+2)
665 [GO] Microbiology Spectrum 2022―Aug―25 Immunological and Pathological Peculiarity of Severe Acute Respiratory Syndrome Coronavirus 2 Beta Variant Sunhee Lee, Gun Young Yoon, Su Jin Lee, Young-Chan Kwon, Hyun Woo Moon, Yu-Jin Kim, et al. (+8)
666 [GO] Microbiology Spectrum 2022―Aug―25 Reduced Sensitivity of Commercial Spike-Specific Antibody Assays after Primary Infection with the SARS-CoV-2 Omicron Variant David Niklas Springer, Thomas Perkmann, Claudia Maria Jani, Patrick Mucher, Katja Prüger, Rodrig Marculescu, et al. (+14)
667 [GO] Microbiology Spectrum 2022―Aug―25 Boosting with Multiple Doses of mRNA Vaccine after Priming with Two Doses of Protein Subunit Vaccine MVC-COV1901 Elicited Robust Humoral and Cellular Immune Responses against Emerging SARS-CoV-2 Variants Chun-Hsiang Chiu, Yu-Hsiu Chang, Chi-Wei Tao, Feng-Yee Chang, Kuo-Chou Chiu, Tien-Wei Chang, et al. (+2)
668 [GO] Journal of Virology 2022―Aug―24 Adaptive Mutation in the Main Protease Cleavage Site of Feline Coronavirus Renders the Virus More Resistant to Main Protease Inhibitors Zhe Jiao, Yuanyuan Yan, Yixi Chen, Gang Wang, Xiaowei Wang, Lisha Li, et al. (+6)
669 [GO] mBio 2022―Aug―24 Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania Andrew D. Marques, Scott Sherrill-Mix, John K. Everett, Hriju Adhikari, Shantan Reddy, Julie C. Ellis, et al. (+11)
670 [GO] Journal of Virology 2022―Aug―24 Molecular Basis of Mink ACE2 Binding to SARS-CoV-2 and Its Mink-Derived Variants Chao Su, Juanhua He, Pengcheng Han, Bin Bai, Dedong Li, Jian Cao, et al. (+14)
671 [GO] Journal of Virology 2022―Aug―24 The Omicron Variant BA.1.1 Presents a Lower Pathogenicity than B.1 D614G and Delta Variants in a Feline Model of SARS-CoV-2 Infection Mathias Martins, Gabriela M. do Nascimento, Mohammed Nooruzzaman, Fangfeng Yuan, Chi Chen, Leonardo C. Caserta, et al. (+5)
672 [GO] Microbiology Spectrum 2022―Aug―24 Incidence of SARS-CoV-2 Infection during the Omicron Variant Emergence in Southern Vietnam: Prior Infection versus Third-Dose Vaccination Thang Thanh Phan, Tran Bao Nguyen, Quynh-Giao Thi Phung, Vinh Thanh Tran, Toan Trong Ho, Suong Phuoc Pho, et al. (+6)
673 [GO] mBio 2022―Aug―24 Hybrid Immunity Shifts the Fc-Effector Quality of SARS-CoV-2 mRNA Vaccine-Induced Immunity Kathryn A. Bowman, Daniel Stein, Sally Shin, Kathie G. Ferbas, Nicole H. Tobin, Colin Mann, et al. (+7)
674 [GO] Microbiology Spectrum 2022―Aug―24 Protein Kinase C Inhibitors Reduce SARS-CoV-2 Replication in Cultured Cells Changbai Huang, Fei Feng, Yongxia Shi, Wenhui Li, Ziqiao Wang, Yunkai Zhu, et al. (+8)
675 [GO] Journal of Virology 2022―Aug―24 Variations in Cell Surface ACE2 Levels Alter Direct Binding of SARS-CoV-2 Spike Protein and Viral Infectivity: Implications for Measuring Spike Protein Interactions with Animal ACE2 Orthologs Soheila Kazemi, Alberto Domingo López-Muñoz, Jaroslav Hollý, Ling Jin, Jonathan W. Yewdell, Brian P. Dolan, Kanta Subbarao
676 [GO] Microbiology Spectrum 2022―Aug―24 Emergence and Spread of the SARS-CoV-2 Variant of Concern Delta across Different Brazilian Regions Ighor Arantes, Felipe Gomes Naveca, Tiago Gräf, Fábio Miyajima, Helisson Faoro, Gabriel Luz Wallau, et al. (+99)
677 [GO] mBio 2022―Aug―23 Genomic Epidemiology and Serology Associated with a SARS-CoV-2 R.1 Variant Outbreak in New Jersey Barun Mathema, Liang Chen, Pengfei Wang, Marcus H. Cunningham, Jose R. Mediavilla, Kar Fai Chow, et al. (+20)
678 [GO] mBio 2022―Aug―23 SARS-CoV-2 Spike-Binding Antibody Longevity and Protection from Reinfection with Antigenically Similar SARS-CoV-2 Variants John Kubale, Charles Gleason, Juan Manuel Carreño, Komal Srivastava, Gagandeep Singh, Aubree Gordon, et al. (+32)
679 [GO] Microbiology Resource Announcements 2022―Aug―23 Near-Complete Genome Sequence of a SARS-CoV-2 Variant B.1.1.7 Virus Strain Isolated in Kazakhstan Bekbolat Usserbayev, Kunsulu Zakarya, Lespek Kutumbetov, Mukhit Orynbaуev, Kulyaisan Sultankulova, Yergali Abduraimov, et al. (+9)
680 [GO] Journal of Virology 2022―Aug―22 Lethal Swine Acute Diarrhea Syndrome Coronavirus Infection in Suckling Mice Ying Chen, Ren-Di Jiang, Qi Wang, Yun Luo, Mei-Qin Liu, Yan Zhu, et al. (+6)
681 [GO] Microbiology Spectrum 2022―Aug―18 Monitoring SARS-CoV-2 Infection Using a Double Reporter-Expressing Virus Kevin Chiem, Jun-Gyu Park, Desarey Morales Vasquez, Richard K. Plemper, Jordi B. Torrelles, James J. Kobie, et al. (+4)
682 [GO] Journal of Virology 2022―Aug―18 UBR5 Acts as an Antiviral Host Factor against MERS-CoV via Promoting Ubiquitination and Degradation of ORF4b Yuzheng Zhou, Rong Zheng, Donglan Liu, Sixu Liu, Cyrollah Disoma, Shiqin Li, et al. (+21)
683 [GO] Journal of Virology 2022―Aug―17 Loss of Pfizer (BNT162b2) Vaccine-Induced Antibody Responses against the SARS-CoV-2 Omicron Variant in Adolescents and Adults Sneh Lata Gupta, Grace Mantus, Kelly E. Manning, Madison Ellis, Mit Patel, Caroline Rose Ciric, et al. (+11)
684 [GO] Journal of Virology 2022―Aug―16 A Temperature-Sensitive Recombinant of Avian Coronavirus Infectious Bronchitis Virus Provides Complete Protection against Homologous Challenge Sarah Keep, Phoebe Stevenson-Leggett, Giulia Dowgier, Katalin Foldes, Isobel Webb, Albert Fones, et al. (+5)
685 [GO] Journal of Virology 2022―Aug―16 Comprehensive Subcellular Localization of Swine Acute Diarrhea Syndrome Coronavirus Proteins Cong Yuan, Xuepeng Suo, Yueyue Duan, Xiangtong Li, Lei Shi, Liyan Cao, et al. (+4)
686 [GO] Microbiology Resource Announcements 2022―Aug―16 Complete Genome Sequence of an Italian Swine Enteric Coronavirus Strain 77590/2019 Alice Papetti, Paolo Bonilauri, Chiara Chiapponi, Laura Baioni, Maria Beatrice Boniotti, Simon Roux
687 [GO] Microbiology Spectrum 2022―Aug―16 Differential Infectivity of Original and Delta Variants of SARS-CoV-2 in Children Compared to Adults Lauren Garnett, Carmen Tse, Duane Funk, Kerry Dust, Kaylie N. Tran, Adam Hedley, et al. (+4)
688 [GO] Journal of Virology 2022―Aug―16 A Glycosylated RBD Protein Induces Enhanced Neutralizing Antibodies against Omicron and Other Variants with Improved Protection against SARS-CoV-2 Infection Juan Shi, Jian Zheng, Wanbo Tai, Abhishek K. Verma, Xiujuan Zhang, Qibin Geng, et al. (+9)
689 [GO] mBio 2022―Aug―16 The New SARS-CoV-2 Variants and Their Epidemiological Impact in Mexico Rodrigo García-López, Estibalitz Laresgoiti-Servitje, Roselyn Lemus-Martin, Alejandro Sanchez-Flores, Carlos Sanders-Velez, Jeremy Phillip Kamil, Vinayaka R. Prasad
690 [GO] mSphere 2022―Aug―15 RBD-VLP Vaccines Adjuvanted with Alum or SWE Protect K18-hACE2 Mice against SARS-CoV-2 VOC Challenge Ting Y. Wong, Brynnan P. Russ, Katherine S. Lee, Olivia A. Miller, Jason Kang, Melissa Cooper, et al. (+20)
691 [GO] Microbiology Spectrum 2022―Aug―11 High-Throughput COVID-19 Testing of Naso-Oropharyngeal Swabs Using a Sensitive Extraction-Free Sample Preparation Method Todd M. Pryce, Erin J. Haygarth, Jessica Bordessa, Courtney T. Jeffery, Ian D. Kay, James P. Flexman, et al. (+2)
692 [GO] Microbiology Spectrum 2022―Aug―11 Comparative Assessment of Filtration- and Precipitation-Based Methods for the Concentration of SARS-CoV-2 and Other Viruses from Wastewater Kata Farkas, Cameron Pellett, Natasha Alex-Sanders, Matthew T. P. Bridgman, Alexander Corbishley, Jasmine M. S. Grimsley, et al. (+8)
693 [GO] Microbiology Spectrum 2022―Aug―10 Humoral and Cellular Immune Responses to Vector, Mix-and-Match, or mRNA Vaccines against SARS-CoV-2 and the Relationship between the Two Immune Responses Minjeong Nam, Seung Gyu Yun, Sang-wook Kim, Chris Gunwoo Kim, Jae Hyun Cha, Cheonghwa Lee, et al. (+9)
694 [GO] mSphere 2022―Aug―10 Effectiveness of HEPA Filters at Removing Infectious SARS-CoV-2 from the Air Hiroshi Ueki, Michiko Ujie, Yosuke Komori, Tatsuo Kato, Masaki Imai, Yoshihiro Kawaoka, Nicole M. Bouvier
695 [GO] Journal of Virology 2022―Aug―09 Targeting Doublecortin-Like Kinase 1 (DCLK1)-Regulated SARS-CoV-2 Pathogenesis in COVID-19 Ram Babu Undi, Jason L. Larabee, Adrian Filiberti, Susanna Ulahannan, Sheeja Aravindan, Edana Stroberg, et al. (+9)
696 [GO] Microbiology Spectrum 2022―Aug―09 Differential Impact of SARS-CoV-2 Isolates, Namely, the Wuhan Strain, Delta, and Omicron Variants on Erythropoiesis Suguru Saito, Shima Shahbaz, Wendy Sligl, Mohammed Osman, D. Lorne Tyrrell, Shokrollah Elahi, Saumitra Das
697 [GO] Microbiology Spectrum 2022―Aug―09 Impact of SARS-CoV-2 Omicron on Rapid Antigen Testing Developed for Early-Pandemic SARS-CoV-2 Variants Karoline Leuzinger, Tim Roloff, Adrian Egli, Hans H. Hirsch, Oliver Laeyendecker
698 [GO] Microbiology Spectrum 2022―Aug―08 Analytical Sensitivity of Eight Different SARS-CoV-2 Antigen-Detecting Rapid Tests for Omicron-BA.1 Variant Meriem Bekliz, Kenneth Adea, Olha Puhach, Francisco Perez-Rodriguez, Stéfane Marques Melancia, Stephanie Baggio, et al. (+8)
699 [GO] mBio 2022―Aug―08 Human Nasal Organoids Model SARS-CoV-2 Upper Respiratory Infection and Recapitulate the Differential Infectivity of Emerging Variants Man Chun Chiu, Cun Li, Xiaojuan Liu, Wenjun Song, Zhixin Wan, Yifei Yu, et al. (+8)
700 [GO] Journal of Virology 2022―Aug―04 Proteolytic Processing of the Coronavirus Replicase Nonstructural Protein 14 Exonuclease Is Not Required for Virus Replication but Alters RNA Synthesis and Viral Fitness Jordan Anderson-Daniels, Jennifer Gribble, Mark Denison, Tom Gallagher
701 [GO] Journal of Virology 2022―Aug―04 The SARS-CoV nsp12 Polymerase Active Site Is Tuned for Large-Genome Replication Grace Campagnola, Vishnu Govindarajan, Annelise Pelletier, Bruno Canard, Olve B. Peersen, Anice C. Lowen
702 [GO] Journal of Virology 2022―Aug―04 Structural Study of SARS-CoV-2 Antibodies Identifies a Broad-Spectrum Antibody That Neutralizes the Omicron Variant by Disassembling the Spike Trimer Wuqiang Zhan, Xiaolong Tian, Xiang Zhang, Shenghui Xing, Wenping Song, Qianying Liu, et al. (+8)
703 [GO] mBio 2022―Aug―04 Neutralization Titers in Vaccinated Patients with SARS-CoV-2 Delta Breakthrough Infections Jing Zou, Xuping Xie, Mingru Liu, Pei-Yong Shi, Ping Ren, Sara Cherry
704 [GO] Journal of Virology 2022―Aug―04 A SCID Mouse Model To Evaluate the Efficacy of Antivirals against SARS-CoV-2 Infection Rana Abdelnabi, Caroline S. Foo, Suzanne J. F. Kaptein, Robbert Boudewijns, Laura Vangeel, Steven De Jonghe, et al. (+4)
705 [GO] Journal of Virology 2022―Aug―04 Pandemic 1918 Influenza Virus Does Not Cause Lethal Infection in Rhesus or Cynomolgus Macaques Mable Chan, Meenakshi Tiwary, Helen L. Wu, Nikesh Tailor, Robert Vendramelli, Jonathan Audet, et al. (+15)
706 [GO] Journal of Virology 2022―Aug―02 A Bispecific Antibody Targeting RBD and S2 Potently Neutralizes SARS-CoV-2 Omicron and Other Variants of Concern Mengqi Yuan, Xiangyu Chen, Yanzhi Zhu, Xiaoqing Dong, Yan Liu, Zhaohui Qian, et al. (+3)
707 [GO] mSphere 2022―Aug―01 Repressed Ang 1-7 in COVID-19 Is Inversely Associated with Inflammation and Coagulation Rebecca M. Carpenter, Mary K. Young, William A. O. Petri, Genevieve R. Lyons, Carol Gilchrist, Robert M. Carey, et al. (+2)
708 [GO] mBio 2022―Aug―01 Impact of SARS-CoV-2 Spike Mutations on Its Activation by TMPRSS2 and the Alternative TMPRSS13 Protease Annelies Stevaert, Ria Van Berwaer, Cato Mestdagh, Julie Vandeput, Els Vanstreels, Valerie Raeymaekers, et al. (+3)
709 [GO] mBio 2022―Jul―28 A Bacteriophage-Based, Highly Efficacious, Needle- and Adjuvant-Free, Mucosal COVID-19 Vaccine Jingen Zhu, Swati Jain, Jian Sha, Himanshu Batra, Neeti Ananthaswamy, Paul B. Kilgore, et al. (+13)
710 [GO] Applied and Environmental Microbiology 2022―Jul―27 Erratum for Bailey et al., “Persistence of Coronavirus Surrogates on Meat and Fish Products during Long-Term Storage” Emily S. Bailey, Marina Curcic, Mark D. Sobsey
711 [GO] Journal of Virology 2022―Jul―25 Acquisition of Furin Cleavage Site and Further SARS-CoV-2 Evolution Change the Mechanisms of Viral Entry, Infection Spread, and Cell Signaling Elena I. Frolova, Oksana Palchevska, Tetyana Lukash, Francisco Dominguez, William Britt, Ilya Frolov, Tom Gallagher
712 [GO] Microbiology Spectrum 2022―Jul―21 Discrimination of SARS-CoV-2 Omicron Sublineages BA.1 and BA.2 Using a High-Resolution Melting-Based Assay: a Pilot Study Akira Aoki, Hirokazu Adachi, Yoko Mori, Miyabi Ito, Katsuhiko Sato, Kenji Okuda, et al. (+4)
713 [GO] Microbiology Spectrum 2022―Jul―20 SARS-CoV-2 Convalescent Sera Binding and Neutralizing Antibody Concentrations Compared with COVID-19 Vaccine Efficacy Estimates against Symptomatic Infection Amy J. Schuh, Panayampalli S. Satheshkumar, Stephanie Dietz, Lara Bull-Otterson, Myrna Charles, Chris Edens, et al. (+21)
714 [GO] Journal of Virology 2022―Jul―20 Sequence Exchange Involving Dozens of Consecutive Bases with External Origin in SARS-Related Coronaviruses Tetsuya Akaishi, Akira Horii, Tadashi Ishii, Tom Gallagher
715 [GO] mBio 2022―Jul―20 Ubiquitination of SARS-CoV-2 NSP6 and ORF7a Facilitates NF-κB Activation Hironori Nishitsuji, Satoko Iwahori, Mariko Ohmori, Kunitada Shimotohno, Takayuki Murata, Adriana Forero, Kellie Jurado
716 [GO] Microbiology Spectrum 2022―Jul―19 Increased Presence of Antibodies against Type I Interferons and Human Endogenous Retrovirus W in Intensive Care Unit COVID-19 Patients Elena Rita Simula, Maria Antonietta Manca, Marta Noli, Somaye Jasemi, Stefano Ruberto, Sergio Uzzau, et al. (+4)
717 [GO] Microbiology Spectrum 2022―Jul―19 Cell-Based Platform for Antigen Testing and Its Application for SARS-CoV-2 Infection Marvin A. Ssemadaali, Sherri Newmyer, Harikrishnan Radhakrishnan, Juan Arredondo, Harold S. Javitz, Satya Dandekar, et al. (+2)
718 [GO] Microbiology Resource Announcements 2022―Jul―19 Near-Full-Length Genome Sequences Representing an Event of Zooanthroponotic Transmission of SARS-CoV-2 Lineage B.1.189 in Mexico during 2020 Roberto Navarro-Lopez, Mario Solis-Hernandez, Marisol K. Rocha-Martinez, Samantha Eberl, Ninnet Gomez-Romero, Lauro Velazquez-Salinas, et al. (+2)
719 [GO] Microbiology Spectrum 2022―Jul―19 Contrasting Distribution of SARS-CoV-2 Lineages across Multiple Rounds of Pandemic Waves in West Bengal, the Gateway of East and North-East States of India Animesh K. Singh, Rezwanuzzaman Laskar, Anindita Banerjee, Rajiv Kumar Mondal, Bishal Gupta, Sonia Deb, et al. (+27)
720 [GO] Microbiology Spectrum 2022―Jul―18 Diagnostic Performance Assessment of Saliva RT-PCR and Nasopharyngeal Antigen for the Detection of SARS-CoV-2 in Peru Roger I. Calderón, Tulip A. Jhaveri, Marco A. Tovar, J. Santiago Palomino, Nadia N. Barreda, Oswaldo M. Sanabria, et al. (+9)
721 [GO] mBio 2022―Jul―13 A Retinol Derivative Inhibits SARS-CoV-2 Infection by Interrupting Spike-Mediated Cellular Entry Liangqin Tong, Lin Wang, Shumin Liao, Xiaoping Xiao, Jing Qu, Chunli Wu, et al. (+9)
722 [GO] Microbiology Spectrum 2022―Jul―13 Goblet Cell Hyperplasia Increases SARS-CoV-2 Infection in Chronic Obstructive Pulmonary Disease Jaspreet Osan, Sattya N. Talukdar, Friederike Feldmann, Beth Ann DeMontigny, Kailey Jerome, Kristina L. Bailey, et al. (+3)
723 [GO] mBio 2022―Jul―13 Genetic Surveillance of SARS-CoV-2 M pro Reveals High Sequence and Structural Conservation Prior to the Introduction of Protease Inhibitor Paxlovid Jonathan T. Lee, Qingyi Yang, Alexey Gribenko, B. Scott Perrin, Yuao Zhu, Rhonda Cardin, et al. (+4)
724 [GO] Journal of Virology 2022―Jul―13 Shared N417-Dependent Epitope on the SARS-CoV-2 Omicron, Beta, and Delta Plus Variants Thandeka Moyo-Gwete, Mashudu Madzivhandila, Nonhlanhla N. Mkhize, Prudence Kgagudi, Frances Ayres, Bronwen E. Lambson, et al. (+13)
725 [GO] Microbiology Spectrum 2022―Jul―13 Avoiding False-Positive SARS-CoV-2 Rapid Antigen Test Results with Point-of-Care Molecular Testing on Residual Test Buffer Jason J. LeBlanc, Gregory R. McCracken, Barbara Goodall, Todd F. Hatchette, Lisa Barrett, John Ross, et al. (+3)
726 [GO] Antimicrobial Agents and Chemotherapy 2022―Jul―12 New Perspectives on Antimicrobial Agents: Molnupiravir and Nirmatrelvir/Ritonavir for Treatment of COVID-19 Robert L. Atmar, Natalie Finch
727 [GO] Microbiology Spectrum 2022―Jul―12 Performance of 22 Rapid Lateral Flow Tests for SARS-CoV-2 Antigen Detection and Influence of “Variants of Concern”: Implications for Clinical Use Aurélie Gourgeon, Alexandre Soulier, Étienne Audureau, Souraya Khouider, Arnaud Galbin, Camille Langlois, et al. (+6)
728 [GO] Journal of Virology 2022―Jul―12 A Virion-Based Combination Vaccine Protects against Influenza and SARS-CoV-2 Disease in Mice Ryan R. Chaparian, Alfred T. Harding, Cait E. Hamele, Kristina Riebe, Amelia Karlsson, Gregory D. Sempowski, et al. (+3)
729 [GO] Journal of Virology 2022―Jul―12 Persistent Maintenance of Intermediate Memory B Cells Following SARS-CoV-2 Infection and Vaccination Recall Response Jernej Pušnik, Julia König, Karola Mai, Enrico Richter, Jasmin Zorn, Hannah Proksch, et al. (+4)
730 [GO] mSphere 2022―Jul―12 Angiotensin-Converting Enzyme 2 Potentiates SARS-CoV-2 Infection by Antagonizing Type I Interferon Induction and Its Down-Stream Signaling Pathway Jian Chen, Jian Liu, Zhilu Chen, Haoran Peng, Cuisong Zhu, Daobin Feng, et al. (+5)
731 [GO] Journal of Virology 2022―Jul―12 The Host Response to Influenza A Virus Interferes with SARS-CoV-2 Replication during Coinfection Kohei Oishi, Shu Horiuchi, Judith M. Minkoff, Benjamin R. tenOever, Mark T. Heise
732 [GO] Microbiology Resource Announcements 2022―Jul―11 Co-circulation of Multiple SARS-CoV-2 Variants of Concern in Dhaka, Bangladesh, during the Second Wave of the COVID-19 Pandemic M. Abdullah Omar Nasif, Nahida Sultana, Raad Rahmat, Tahmina Akther, Afzalun Nessa, Munira Jahan, Simon Roux
733 [GO] Microbiology Spectrum 2022―Jul―11 Human ACE2 Genetic Polymorphism Affecting SARS-CoV and SARS-CoV-2 Entry into Cells Takanari Hattori, Takeshi Saito, Kosuke Okuya, Yuji Takahashi, Hiroko Miyamoto, Masahiro Kajihara, et al. (+3)
734 [GO] Applied and Environmental Microbiology 2022―Jul―11 Comparison of Surface Persistence of SARS-CoV-2 Alpha and Delta Variants on Stainless Steel at 4°C and 24°C Okechukwu Onianwa, Isobel Garratt, Jennifer Carter, Antony Spencer, Neville Q. Verlander, Thomas Pottage, et al. (+2)
735 [GO] Journal of Virology 2022―Jul―11 Evaluation of the Deletion of MGF110-5L-6L on Swine Virulence from the Pandemic Strain of African Swine Fever Virus and Use as a DIVA Marker in Vaccine Candidate ASFV-G-ΔI177L Elizabeth Ramirez-Medina, Elizabeth Vuono, Ediane Silva, Ayushi Rai, Alyssa Valladares, Sarah Pruitt, et al. (+5)
736 [GO] Microbiology and Molecular Biology Reviews 2022―Jul―07 Lessons Learned and Yet-to-Be Learned on the Importance of RNA Structure in SARS-CoV-2 Replication Maclean Bassett, Marco Salemi, Brittany Rife Magalis
737 [GO] Microbiology Spectrum 2022―Jul―06 Symptomatic and Asymptomatic Transmission of SARS-CoV-2 in K-12 Schools, British Columbia, Canada April to June 2021 Alexandra Choi, Louise C. Mâsse, Samantha Bardwell, Iryna Kayda, Yanjie Zhao, Yang Xin Zi Xu, et al. (+10)
738 [GO] Microbiology Spectrum 2022―Jul―06 RG203KR Mutations in SARS-CoV-2 Nucleocapsid: Assessing the Impact Using a Virus-Like Particle Model System Harsha Raheja, Soma Das, Anindita Banerjee, Dikshaya P., Deepika C., Debanjan Mukhopadhyay, et al. (+3)
739 [GO] Journal of Virology 2022―Jul―06 Deletion of the H108R Gene Reduces Virulence of the Pandemic Eurasia Strain of African Swine Fever Virus with Surviving Animals Being Protected against Virulent Challenge Elizabeth Vuono, Elizabeth Ramirez-Medina, Ediane Silva, Ayushi Rai, Sarah Pruitt, Nallely Espinoza, et al. (+5)
740 [GO] Microbiology Spectrum 2022―Jul―05 Limited Correlation between SARS-CoV-2 Serologic Assays for Identification of High-Titer COVID-19 Convalescent Plasma Using FDA Thresholds Nicholas E. Larkey, Radwa Ewaisha, Michael A. Lasho, Matthew M. Roforth, Dane Granger, Calvin R. Jerde, et al. (+9)
741 [GO] Microbiology Spectrum 2022―Jul―05 Concerns Regarding Validity of the Use of Bean Extract-Based Gargle for COVID-19 Diagnosis Ki Ho Hong, Heungsup Sung, Daniel R. Perez
742 [GO] Microbiology Spectrum 2022―Jul―05 Author’s Reply to “Concerns regarding Validity of the Use of Bean Extract-Based Gargle for COVID-19 Diagnosis” Joseph Kwon, Euna Ko, Se-Young Cho, Young-Ho Lee, Sangmi Jun, Kyuhong Lee, et al. (+22)
743 [GO] Microbiology Spectrum 2022―Jul―05 Rapid Detection of the Omicron (B.1.1.529) SARS-CoV-2 Variant Using a COVID-19 Diagnostic PCR Assay Chiara Ippoliti, Flavio De Maio, Giulia Santarelli, Simona Marchetti, Antonietta Vella, Rosaria Santangelo, et al. (+3)
744 [GO] Journal of Virology 2022―Jul―05 Engineering and Characterization of Avian Coronavirus Mutants Expressing Fluorescent Reporter Proteins from the Replicase Gene Na Xing, Zhisheng Wang, Jichun Wang, Mariana Nascimento, Anan Jongkaewwattana, Jakob Trimpert, et al. (+3)
745 [GO] mSphere 2022―Jul―05 Impact of Prior Infection on SARS-CoV-2 Antibody Responses in Vaccinated Long-Term Care Facility Staff Emily N. Gallichotte, Mary Nehring, Sophia Stromberg, Michael C. Young, Ashley Snell, Josh Daniels, et al. (+5)
746 [GO] Antimicrobial Agents and Chemotherapy 2022―Jul―05 Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces Delphine Lapaillerie, Cathy Charlier, Véronique Guyonnet-Dupérat, Emilie Murigneux, Henrique S. Fernandes, Fábio G. Martins, et al. (+19)
747 [GO] Journal of Virology 2022―Jul―05 Species-Specific Molecular Barriers to SARS-CoV-2 Replication in Bat Cells Sophie-Marie Aicher, Felix Streicher, Maxime Chazal, Delphine Planas, Dongsheng Luo, Julian Buchrieser, et al. (+13)
748 [GO] Microbiology Spectrum 2022―Jul―05 Decreased Efficiency of Neutralizing Antibodies from Previously Infected or Vaccinated Individuals against the B.1.617.2 (Delta) SARS-CoV-2 Variant Chloé Dimeglio, Fabrice Herin, Isabelle Da-Silva, Caroline Gernigon, Marion Porcheron, Sabine Chapuy-Regaud, et al. (+2)
749 [GO] Microbiology Spectrum 2022―Jun―30 Cross-Species Transmission of Bat Coronaviruses in the Americas: Contrasting Patterns between Alphacoronavirus and Betacoronavirus Diego A. Caraballo, Biao He
750 [GO] Microbiology Spectrum 2022―Jun―30 SARS-CoV-2 Seroconversion in Response to Infection and Vaccination: a Time Series Local Study in Brazil Luciano F. Huergo, Nigella M. Paula, Ana C. A. Gonçalves, Carlos H. S. Kluge, Paulo H. S. A. Marins, Haxley S. C. Camargo, et al. (+12)
751 [GO] Microbiology Spectrum 2022―Jun―29 Molecular Evolution of Porcine Reproductive and Respiratory Syndrome Virus Field Strains from Two Swine Production Systems in the Midwestern United States from 2001 to 2020 Ruwini Rupasinghe, Kyuyoung Lee, Xin Liu, Phillip C. Gauger, Jianqiang Zhang, Beatriz Martínez-López, Yun Young Go
752 [GO] Journal of Clinical Microbiology 2022―Jun―29 COVID-19 Variant Detection with a High-Fidelity CRISPR-Cas12 Enzyme Clare L. Fasching, Venice Servellita, Bridget McKay, Vaishnavi Nagesh, James P. Broughton, Alicia Sotomayor-Gonzalez, et al. (+13)
753 [GO] Journal of Virology 2022―Jun―29 An S1-Nanoparticle Vaccine Protects against SARS-CoV-2 Challenge in K18-hACE2 Mice Linda van Oosten, Kexin Yan, Daniel J. Rawle, Thuy T. Le, Jort J. Altenburg, Cyrielle Fougeroux, et al. (+7)
754 [GO] Microbiology Spectrum 2022―Jun―29 Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda Bailey Lubinski, Laura E. Frazier, My V. T. Phan, Daniel L. Bugembe, Jessie L. Cunningham, Tiffany Tang, et al. (+5)
755 [GO] Journal of Clinical Microbiology 2022―Jun―29 A Method for Variant Agnostic Detection of SARS-CoV-2, Rapid Monitoring of Circulating Variants, and Early Detection of Emergent Variants Such as Omicron Eric Lai, Emily B. Kennedy, Jean Lozach, Kathleen Hayashibara, Jeremy Davis-Turak, David Becker, et al. (+21)
756 [GO] Microbiology Spectrum 2022―Jun―28 Decreased Passive Immunity to Respiratory Viruses through Human Milk during the COVID-19 Pandemic Marloes Grobben, Hannah G. Juncker, Karlijn van der Straten, A. H. Ayesha Lavell, Michiel Schinkel, David T. P. Buis, et al. (+12)
757 [GO] Journal of Virology 2022―Jun―28 Long-Term Expanding Porcine Airway Organoids Provide Insights into the Pathogenesis and Innate Immunity of Porcine Respiratory Coronavirus Infection Chengfan Jiang, Liang Li, Mei Xue, Liyuan Zhao, Xiang Liu, Wenzhe Wang, et al. (+3)
758 [GO] mBio 2022―Jun―28 The Kinetics of SARS-CoV-2 Antibody Development Is Associated with Clearance of RNAemia Chuangqi Wang, Yijia Li, Paulina Kaplonek, Matteo Gentili, Stephanie Fischinger, Kathryn A. Bowman, et al. (+11)
759 [GO] Microbiology Spectrum 2022―Jun―28 Investigating the Sensitivity of Nasal or Throat Swabs: Combination of Both Swabs Increases the Sensitivity of SARS-CoV-2 Rapid Antigen Tests Barbara L. Goodall, Jason J. LeBlanc, Todd F. Hatchette, Lisa Barrett, Glenn Patriquin, Rebekah M. Martin
760 [GO] Microbiology Spectrum 2022―Jun―27 BRET-Based Self-Cleaving Biosensors for SARS-CoV-2 3CLpro Inhibitor Discovery Ningke Hou, Chen Peng, Lijing Zhang, Yuyao Zhu, Qi Hu, Marlene Dreux
761 [GO] Journal of Virology 2022―Jun―27 Using Species a Rotavirus Reverse Genetics to Engineer Chimeric Viruses Expressing SARS-CoV-2 Spike Epitopes Ola Diebold, Victoria Gonzalez, Luca Venditti, Colin Sharp, Rosemary A. Blake, Wenfang S. Tan, et al. (+6)
762 [GO] Microbiology Spectrum 2022―Jun―27 Identification of SARS-CoV-2 Variants of Concern Using Amplicon Next-Generation Sequencing Abdelmajeed Nasereddin, Hadar Golan Berman, Dana G. Wolf, Esther Oiknine-Djian, Sheera Adar, Michael Klutstein
763 [GO] Microbiology Spectrum 2022―Jun―27 Construction of a Porcine Reproductive and Respiratory Syndrome Virus with Nanoluc Luciferase Reporter: a Stable and Highly Efficient Tool for Viral Quantification Both In Vitro and In Vivo Yang Wang, Xinna Ge, Yongning Zhang, Xin Guo, Jun Han, Lei Zhou, et al. (+2)
764 [GO] Journal of Virology 2022―Jun―23 Novel Engineered SARS-CoV-2 HR1 Trimer Exhibits Improved Potency and Broad-Spectrum Activity against SARS-CoV-2 and Its Variants Wenwen Bi, Guilin Chen, Bobo Dang, Tom Gallagher
765 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―23 Characterizing SARS-CoV-2 Viral Clearance Kinetics to Improve the Design of Antiviral Pharmacometric Studies James A. Watson, Stephen M. Kissler, Nicholas P. J. Day, Yonatan H. Grad, Nicholas J. White
766 [GO] mBio 2022―Jun―23 Antibody and Memory B-Cell Immunity in a Heterogeneously SARS-CoV-2-Infected and -Vaccinated Population Eva Bednarski, Perla M. Del Rio Estrada, Justin DaSilva, Celia Boukadida, Fengwen Zhang, Yara A. Luna-Villalobos, et al. (+19)
767 [GO] Journal of Clinical Microbiology 2022―Jun―22 Limitations of Molecular and Antigen Test Performance for SARS-CoV-2 in Symptomatic and Asymptomatic COVID-19 Contacts Matthew L. Robinson, Agha Mirza, Nicholas Gallagher, Alec Boudreau, Lydia Garcia Jacinto, Tong Yu, et al. (+12)
768 [GO] Microbiology Spectrum 2022―Jun―22 Impact of Fast SARS-CoV-2 Molecular Point-Of-Care Testing on Patients’ Length of Stay in an Emergency Department Audrey Baron, Olivier Peyrony, Maud Salmona, Nadia Mahjoub, Sami Ellouze, Maud Anastassiou, et al. (+6)
769 [GO] Microbiology Spectrum 2022―Jun―22 Expression Profile and Localization of SARS-CoV-2 Nonstructural Replicase Proteins in Infected Cells Fang-Shu Shi, Yin Yu, Ya-Li Li, Lilan Cui, Zhuangzhuang Zhao, Mi Wang, et al. (+4)
770 [GO] Microbiology Spectrum 2022―Jun―22 Correction for Valcourt et al., “Evaluating Humoral Immunity against SARS-CoV-2: Validation of a Plaque-Reduction Neutralization Test and a Multilaboratory Comparison of Conventional and Surrogate Neutralization Assays” Emelissa J. Valcourt, Kathy Manguiat, Alyssia Robinson, Yi-Chan Lin, Kento T. Abe, Samira Mubarek, et al. (+25)
771 [GO] mBio 2022―Jun―21 Microbiome Analysis for Wastewater Surveillance during COVID-19 Kyle D. Brumfield, Menu Leddy, Moiz Usmani, Joseph A. Cotruvo, Ching-Tzone Tien, Suzanne Dorsey, et al. (+13)
772 [GO] Journal of Virology 2022―Jun―21 The Cellular Characterization of SARS-CoV-2 Spike Protein in Virus-Infected Cells Using the Receptor Binding Domain Binding Specific Human Monoclonal Antibodies Conrad En-Zuo Chan, Ching-Ging Ng, Angeline Pei-Chew Lim, Shirley Lay-Kheng Seah, De-Hoe Chye, Steven Ka-Khuen Wong, et al. (+9)
773 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―16 In Vitro Selection of Remdesivir-Resistant SARS-CoV-2 Demonstrates High Barrier to Resistance Liva Checkmahomed, Julie Carbonneau, Venice Du Pont, Nicholas C. Riola, Jason K. Perry, Jiani Li, et al. (+5)
774 [GO] mBio 2022―Jun―16 Metalloproteinase-Dependent and TMPRSS2-Independent Cell Surface Entry Pathway of SARS-CoV-2 Requires the Furin Cleavage Site and the S2 Domain of Spike Protein Mizuki Yamamoto, Jin Gohda, Ayako Kobayashi, Keiko Tomita, Youko Hirayama, Naohiko Koshikawa, et al. (+6)
775 [GO] Microbiology Spectrum 2022―Jun―16 Multiplex Target-Redundant RT-LAMP for Robust Detection of SARS-CoV-2 Using Fluorescent Universal Displacement Probes Enos C. Kline, Nuttada Panpradist, Ian T. Hull, Qin Wang, Amy K. Oreskovic, Peter D. Han, et al. (+3)
776 [GO] mSphere 2022―Jun―15 The Serological Sciences Network (SeroNet) for COVID-19: Depth and Breadth of Serology Assays and Plans for Assay Harmonization Amy B. Karger, James D. Brien, Jayne M. Christen, Santosh Dhakal, Troy J. Kemp, Sabra L. Klein, et al. (+54)
777 [GO] Microbiology Spectrum 2022―Jun―15 Anti-Spike Antibody Response to Natural Infection with SARS-CoV-2 and Its Activity against Emerging Variants Cheng-Pin Chen, Kuan-Ying A. Huang, Shin-Ru Shih, Yi-Chun Lin, Chien-Yu Cheng, Yhu-Chering Huang, et al. (+3)
778 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―15 Dual Inhibition of Vacuolar-ATPase and TMPRSS2 Is Required for Complete Blockade of SARS-CoV-2 Entry into Cells Simoun Icho, Edurne Rujas, Krithika Muthuraman, John Tam, Huazhu Liang, Shelby Landreth, et al. (+4)
779 [GO] mSystems 2022―Jun―15 Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings Victor J. Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, et al. (+30)
780 [GO] mSystems 2022―Jun―15 Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings Victor J. Cantú, Pedro Belda-Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, William Jordan, et al. (+32)
781 [GO] Microbiology Spectrum 2022―Jun―14 Evaluation of Diagnostic Strategies for Identifying SARS-CoV-2 Infection in Clinical Practice: a Systematic Review and Compliance with the Standards for Reporting Diagnostic Accuracy Studies Guideline (STARD) Paula Cremades-Martínez, Lucy A. Parker, Elisa Chilet-Rosell, Blanca Lumbreras, Tulip A. Jhaveri
782 [GO] Microbiology Spectrum 2022―Jun―14 Susceptibility of SARS-CoV-2 Omicron Variants to Therapeutic Monoclonal Antibodies: Systematic Review and Meta-analysis Kaiming Tao, Philip L. Tzou, Sergei L. Kosakovsky Pond, John P. A. Ioannidis, Robert W. Shafer, Takamasa Ueno
783 [GO] Journal of Virology 2022―Jun―14 Induction of Broadly Cross-Reactive Antibody Responses to SARS-CoV-2 Variants by S1 Nanoparticle Vaccines Cong Sun, Run-Yu Yuan, Chu Xie, Jiu-Feng Sun, Xin-Yan Fang, Yi-Sha Hu, et al. (+5)
784 [GO] Journal of Virology 2022―Jun―14 Longitudinal Assessment of SARS-CoV-2-Specific T Cell Cytokine-Producing Responses for 1 Year Reveals Persistence of Multicytokine Proliferative Responses, with Greater Immunity Associated with Disease Severity Jonah Lin, Ryan Law, Chapin S. Korosec, Christine Zhou, Wan Hon Koh, Mohammad Sajjad Ghaemi, et al. (+17)
785 [GO] Microbiology Spectrum 2022―Jun―13 Rapid Detection of Bacterial and Fungal Pathogens Using the T2MR versus Blood Culture in Patients with Severe COVID-19 Tamara Seitz, Johannes Holbik, Julian Hind, Georg Gibas, Mario Karolyi, Erich Pawelka, et al. (+4)
786 [GO] mBio 2022―Jun―13 Potency of Fusion-Inhibitory Lipopeptides against SARS-CoV-2 Variants of Concern Katharina S. Schmitz, Daryl Geers, Rory D. de Vries, T. Francesca Bovier, Anna Z. Mykytyn, Corine H. Geurts van Kessel, et al. (+5)
787 [GO] Journal of Virology 2022―Jun―09 SARS-CoV-2 Spike Furin Cleavage Site and S2′ Basic Residues Modulate the Entry Process in a Host Cell-Dependent Manner Muriel Lavie, Jean Dubuisson, Sandrine Belouzard, Tom Gallagher
788 [GO] Microbiology Resource Announcements 2022―Jun―08 Gut Microbiome 16S rRNA Gene Amplicon Taxonomic Profiling of Hospitalized Moroccan COVID-19 Patients Sofia Sehli, Abdellah Idrissi Azami, Nouzha Dini, Nihal Habib, Bouchra Chaouni, Salsabil Hamdi, et al. (+6)
789 [GO] Journal of Virology 2022―Jun―08 A So-Far Overlooked Secondary Conformation State in the Binding Mode of SARS-CoV-2 Spike Protein to Human ACE2 and Its Conversion Rate Are Crucial for Estimating Infectivity Efficacy of the Underlying Virus Variant Marc Sevenich, Joop van den Heuvel, Ian Gering, Jeannine Mohrlüder, Dieter Willbold, Tom Gallagher
790 [GO] Applied and Environmental Microbiology 2022―Jun―07 Persistence of Coronavirus Surrogates on Meat and Fish Products during Long-Term Storage Emily S. Bailey, Marina Curcic, Mark D. Sobsey, Nicole R. Buan
791 [GO] Journal of Microbiology and Biology Education 2022―Jun―06 An Upper-Division, Remote Microbiology Laboratory That Blends Virtual and Hands-on Components to Promote Student Success during the COVID-19 Pandemic Candace Guzman-Cole, Marcos E. García-Ojeda, Jennifer Herzog
792 [GO] Journal of Clinical Microbiology 2022―Jun―06 The Hidden Crisis in the Times of COVID-19: Critical Shortages of Medical Laboratory Professionals in Clinical Microbiology Amy L. Leber, Ellena Peterson, Jennifer Dien Bard, Romney M. Humphries
793 [GO] Microbiology Spectrum 2022―Jun―06 Insertion-and-Deletion Mutations between the Genomes of SARS-CoV, SARS-CoV-2, and Bat Coronavirus RaTG13 Tetsuya Akaishi, Maria Grazia Cusi
794 [GO] Microbiology Spectrum 2022―Jun―06 Detection and Stability of SARS-CoV-2 in Three Self-Collected Specimen Types: Flocked Midturbinate Swab (MTS) in Viral Transport Media, Foam MTS, and Saliva Vic Veguilla, Ashley L. Fowlkes, Adam Bissonnette, Shawn Beitel, Manjusha Gaglani, Christina A. Porucznik, et al. (+22)
795 [GO] Journal of Virology 2022―Jun―06 Erratum for Essalmani et al., “Distinctive Roles of Furin and TMPRSS2 in SARS-CoV-2 Infectivity” Rachid Essalmani, Jaspreet Jain, Delia Susan-Resiga, Ursula Andréo, Alexandra Evagelidis, Rabeb Mouna Derbali, et al. (+12)
796 [GO] Journal of Clinical Microbiology 2022―Jun―06 Considerations regarding Interpretation of Positive SARS-CoV-2 Molecular Results with Late Cycle Threshold Values Stephanie L. Mitchell, Michael J. Loeffelholz, Romney M. Humphries
797 [GO] Clinical Microbiology Reviews 2022―Jun―06 Sensitivity to Vaccines, Therapeutic Antibodies, and Viral Entry Inhibitors and Advances To Counter the SARS-CoV-2 Omicron Variant Hao Zhou, Michelle Møhlenberg, Jigarji C. Thakor, Hardeep Singh Tuli, Pengfei Wang, Yehuda G. Assaraf, et al. (+2)
798 [GO] Microbiology Spectrum 2022―Jun―06 Trivalent NDV-HXP-S Vaccine Protects against Phylogenetically Distant SARS-CoV-2 Variants of Concern in Mice Irene González-Domínguez, Jose Luis Martínez, Stefan Slamanig, Nicholas Lemus, Yonghong Liu, Tsoi Ying Lai, et al. (+12)
799 [GO] Microbiology Spectrum 2022―Jun―02 Evaluation of the Panbio COVID-19 Antigen Rapid Diagnostic Test in Subjects Infected with Omicron Using Different Specimens Rafael Mello Galliez, Larissa Bomfim, Diana Mariani, Isabela de Carvalho Leitão, Anna Carla Pinto Castiñeiras, Cassia Cristina Alves Gonçalves, et al. (+13)
800 [GO] Microbiology Spectrum 2022―Jun―02 A Qualitative Comparison of the Abbott SARS-CoV-2 IgG II Quant Assay against Commonly Used Canadian SARS-CoV-2 Enzyme Immunoassays in Blood Donor Retention Specimens, April 2020 to March 2021 Kento T. Abe, Bhavisha Rathod, Karen Colwill, Anne-Claude Gingras, Ashleigh Tuite, Ninette F. Robbins, et al. (+7)
801 [GO] Journal of Virology 2022―Jun―02 SARS-CoV-2 N Protein Antagonizes Stress Granule Assembly and IFN Production by Interacting with G3BPs to Facilitate Viral Replication Hainan Liu, Yu Bai, Xun Zhang, Ting Gao, Yue Liu, Entao Li, et al. (+17)
802 [GO] Journal of Clinical Microbiology 2022―Jun―01 Bacterial Pneumonia and Respiratory Culture Utilization among Hospitalized Patients with and without COVID-19 in a New York City Hospital Maxwell D. Weidmann, Gregory J. Berry, Jason E. Zucker, Simian Huang, Magdalena E. Sobieszczyk, Daniel A. Green, Melissa B. Miller
803 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―01 Population Pharmacokinetics of Remdesivir and GS-441524 in Hospitalized COVID-19 Patients E. Leegwater, D. J. A. R. Moes, L. B. E. Bosma, T. H. Ottens, I. M. van der Meer, C. van Nieuwkoop, E. B. Wilms
804 [GO] Microbiology Spectrum 2022―Jun―01 Evaluation of a Multiplex Bead Assay against Single-Target Assays for Detection of IgG Antibodies to SARS-CoV-2 Kaitlin F. Mitchell, Christina M. Carlson, Douglas Nace, Brian S. Wakeman, Jan Drobeniuc, Glenn P. Niemeyer, et al. (+7)
805 [GO] Journal of Clinical Microbiology 2022―Jun―01 Development of a Rapid Live SARS-CoV-2 Neutralization Assay Based on a qPCR Readout Sabine Lichtenegger, Sabine Saiger, Melina Hardt, Susanne Kulnik, Gabriel E. Wagner, Barbara Kleinhappl, et al. (+8)
806 [GO] Microbiology Resource Announcements 2022―May―31 Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic Munira Jahan, M. Abdullah Omar Nasif, Raad Rahmat, SM Rashed Ul Islam, Saif Ullah Munshi, M. Sharfuddin Ahmed, Simon Roux
807 [GO] mSystems 2022―May―31 Obesity: Policy and Practice Recommendations for High-Risk Populations Influenced by the COVID-19 Pandemic Kathryn N. Robinson, Deborah A. Saber, Suzanne Lynn Ishaq
808 [GO] Microbiology Spectrum 2022―May―31 Utility of Serum 1,3-β- d -Glucan Testing for Diagnosis and Prognostication in COVID-19-Associated Pulmonary Aspergillosis Matthias Egger, Florian Prüller, Robert Krause, Juergen Prattes, Martin Hoenigl, Gustavo H. Goldman
809 [GO] Microbiology Spectrum 2022―May―31 A Look inside the Replication Dynamics of SARS-CoV-2 in Blyth’s Horseshoe Bat ( Rhinolophus lepidus ) Kidney Cells Heidi Auerswald, Dolyce H. W. Low, Jurre Y. Siegers, Teyputita Ou, Sonita Kol, Saraden In, et al. (+7)
810 [GO] Microbiology Spectrum 2022―May―31 Impact of the SARS-CoV-2 Pandemic on the Prevalence and Incidence of Gastrointestinal Viruses in Children up to Five Years Old: a Retrospective Cohort Study Alfredo Maldonado-Barrueco, Julio García-Rodríguez, Jorge Yániz-Ramirez, Irene Serrano-Vaquero, Juan Carlos Parra-Alonso, Carlos Vega-Nieto, et al. (+2)
811 [GO] Microbiology Spectrum 2022―May―31 Receptor-Binding-Motif-Targeted Sanger Sequencing: a Quick and Cost-Effective Strategy for Molecular Surveillance of SARS-CoV-2 Variants Sankar Prasad Chaki, Melissa M. Kahl-McDonagh, Benjamin W. Neuman, Kurt A. Zuelke, Prabagaran Narayanasamy
812 [GO] Microbiology Resource Announcements 2022―May―31 Metagenomics of Wastewater Influent from Wastewater Treatment Facilities across Ontario in the Era of Emerging SARS-CoV-2 Variants of Concern Opeyemi U. Lawal, Linkang Zhang, Valeria R. Parreira, R. Stephen Brown, Charles Chettleburgh, Nora Dannah, et al. (+16)
813 [GO] Microbiology Spectrum 2022―May―31 Effects of Spike Mutations in SARS-CoV-2 Variants of Concern on Human or Animal ACE2-Mediated Virus Entry and Neutralization Yunjeong Kim, Natasha N. Gaudreault, David A. Meekins, Krishani D. Perera, Dashzeveg Bold, Jessie D. Trujillo, et al. (+5)
814 [GO] mBio 2022―May―31 The Deubiquitinase USP29 Promotes SARS-CoV-2 Virulence by Preventing Proteasome Degradation of ORF9b Wenying Gao, Liuli Wang, Xiaohui Ju, Simin Zhao, Zhaolong Li, Manman Su, et al. (+6)
815 [GO] Microbiology Spectrum 2022―May―26 Evaluation of Four Point of Care (POC) Antigen Assays for the Detection of the SARS-CoV-2 Variant Omicron Justin Hardick, Nicholas Gallagher, Jaiprasath Sachithanandham, Amary Fall, Zishan Siddiqui, Andrew Pekosz, et al. (+3)
816 [GO] Microbiology Spectrum 2022―May―25 Development and Implementation of Dried Blood Spot-Based COVID-19 Serological Assays for Epidemiologic Studies Marcus P. Wong, Michelle A. Meas, Cameron Adams, Samantha Hernandez, Valerie Green, Magelda Montoya, et al. (+20)
817 [GO] Microbiology Spectrum 2022―May―23 Detectable Duration of Viable SARS-CoV-2, Total and Subgenomic SARS-CoV-2 RNA in Noncritically Ill COVID-19 Patients: a Prospective Cohort Study Angsana Phuphuakrat, Ekawat Pasomsub, Sirawat Srichatrapimuk, Suppachok Kirdlarp, Ampa Suksatu, Chanya Srisaowakarn, et al. (+11)
818 [GO] mBio 2022―May―23 The Translational Landscape of SARS-CoV-2-infected Cells Reveals Suppression of Innate Immune Genes Maritza Puray-Chavez, Nakyung Lee, Kasyap Tenneti, Yiqing Wang, Hung R. Vuong, Yating Liu, et al. (+10)
819 [GO] mBio 2022―May―19 Circulatory Exosomes from COVID-19 Patients Trigger NLRP3 Inflammasome in Endothelial Cells Subhayan Sur, Robert Steele, T. Scott Isbell, Ranjit Ray, Ratna B. Ray, Andrea L. Cox, Diane E. Griffin
820 [GO] mSphere 2022―May―19 PARIS and SPARTA: Finding the Achilles’ Heel of SARS-CoV-2 Viviana Simon, Vamsi Kota, Ryan F. Bloomquist, Hannah B. Hanley, David Forgacs, Savita Pahwa, et al. (+22)
821 [GO] mSphere 2022―May―19 Ethnoracial Disparities in SARS-CoV-2 Seroprevalence in a Large Cohort of Individuals in Central North Carolina from April to December 2020 Cesar A. Lopez, Clark H. Cunningham, Sierra Pugh, Katerina Brandt, Usaphea P. Vanna, Matthew J. Delacruz, et al. (+23)
822 [GO] Journal of Virology 2022―May―19 Effective Interferon Lambda Treatment Regimen To Control Lethal MERS-CoV Infection in Mice Ronald Dijkman, Abhishek Kumar Verma, Muneeswaran Selvaraj, Roshan Ghimire, Hans Henrik Gad, Rune Hartmann, et al. (+5)
823 [GO] Journal of Virology 2022―May―19 The 2009 Pandemic H1N1 Hemagglutinin Stalk Remained Antigenically Stable after Circulating in Humans for a Decade Shannon R. Christensen, Emily T. Martin, Joshua G. Petrie, Arnold S. Monto, Scott E. Hensley, Kanta Subbarao
824 [GO] mSystems 2022―May―18 Stability of SARS-CoV-2-Encoded Proteins and Their Antibody Levels Correlate with Interleukin 6 in COVID-19 Patients Wangyang Li, Georgios D. Kitsios, William Bain, Chenxiao Wang, Tiao Li, Kristen V. Fanning, et al. (+6)
825 [GO] Microbiology Spectrum 2022―May―18 Tracheal Aspirate and Bronchoalveolar Lavage as Potential Specimen Types for COVID-19 Testing Using the Cepheid Xpert Xpress SARS-CoV-2/Flu/RSV Sang Ho Kim, Fatimah AlMutawa, William Lainhart
826 [GO] mSystems 2022―May―18 Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants Yiyan Yang, Keith Dufault-Thompson, Rafaela Salgado Fontenele, Xiaofang Jiang, Sergio Baranzini
827 [GO] Microbiology Spectrum 2022―May―17 Evaluating the Ability to ID (COVID-19) NOW: a Large Real-World Prospective Evaluation of the Abbott ID NOW COVID-19 Assay K. R. Barker, L. N. Small, D. V. Thai, K. Y. Sohn, L. C. Rosella, Karen C. Carroll
828 [GO] Microbiology Spectrum 2022―May―17 Increased Abundance of Achromobacter xylosoxidans and Bacillus cereus in Upper Airway Transcriptionally Active Microbiome of COVID-19 Mortality Patients Indicates Role of Co-Infections in Disease Severity and Outcome Priti Devi, Ranjeet Maurya, Priyanka Mehta, Uzma Shamim, Aanchal Yadav, Partha Chattopadhyay, et al. (+11)
829 [GO] Microbiology Spectrum 2022―May―17 Super Dominant Pathobiontic Bacteria in the Nasopharyngeal Microbiota Cause Secondary Bacterial Infection in COVID-19 Patients Tian Qin, Yajie Wang, Jianping Deng, BaoHong Xu, Xiong Zhu, Jitao Wang, et al. (+20)
830 [GO] Journal of Microbiology and Biology Education 2022―May―16 A CURE for the COVID-19 Era: A Vaccine-Focused Online Immunology Laboratory Srishti Baid, P. Scott Hefty, Dyan E. Morgan, Veronica A. Segarra
831 [GO] mSystems 2022―May―16 SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp. Victor J. Cantú, Rodolfo A. Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, et al. (+35)
832 [GO] Microbiology Spectrum 2022―May―16 Viral RNA Load and Infectivity of SARS-CoV-2 in Paired Respiratory and Oral Specimens from Symptomatic, Asymptomatic, or Postsymptomatic Individuals Rebecca L. Tallmadge, Melissa Laverack, Brittany Cronk, Roopa Venugopalan, Mathias Martins, XiuLin Zhang, et al. (+4)
833 [GO] Microbiology Spectrum 2022―May―16 Evaluation of the Roche SARS-CoV-2 Rapid Antibody Test in Samples from Vaccinated Individuals Johannes Hayer, Eva Urlaub, Kileen L. Shier
834 [GO] Microbiology Spectrum 2022―May―12 Identifying SARS-CoV-2 Variants of Concern through Saliva-Based RT-qPCR by Targeting Recurrent Mutation Sites Rachel E. Ham, Austin R. Smothers, Rui Che, Keegan J. Sell, Congyue Annie Peng, Delphine Dean, Heba H. Mostafa
835 [GO] Microbiology Spectrum 2022―May―11 Emergence of SARS-CoV-2 Spike Mutations during Prolonged Infection in Immunocompromised Hosts Karrie K. K. Ko, Hatairat Yingtaweesittikul, Thuan Tong Tan, Limin Wijaya, Delphine Yanhong Cao, Sui Sin Goh, et al. (+9)
836 [GO] Journal of Virology 2022―May―11 SARS-CoV-2 Variants of Concern Hijack IFITM2 for Efficient Replication in Human Lung Cells Rayhane Nchioua, Annika Schundner, Dorota Kmiec, Caterina Prelli Bozzo, Fabian Zech, Lennart Koepke, et al. (+7)
837 [GO] mBio 2022―May―09 Serine Protease Inhibitors Restrict Host Susceptibility to SARS-CoV-2 Infections Ebba Rosendal, Ionut Sebastian Mihai, Miriam Becker, Debojyoti Das, Lars Frängsmyr, B. David Persson, et al. (+10)
838 [GO] Antimicrobial Agents and Chemotherapy 2022―May―09 Remdesivir and GS-441524 Retain Antiviral Activity against Delta, Omicron, and Other Emergent SARS-CoV-2 Variants Jared Pitts, Jiani Li, Jason K. Perry, Venice Du Pont, Nicholas Riola, Lauren Rodriguez, et al. (+12)
839 [GO] Microbiology Spectrum 2022―May―05 SARS-CoV-2 Infection of Microglia Elicits Proinflammatory Activation and Apoptotic Cell Death Gi Uk Jeong, Jaemyun Lyu, Kyun-Do Kim, Young Cheul Chung, Gun Young Yoon, Sumin Lee, et al. (+6)
840 [GO] Microbiology Spectrum 2022―May―04 Virucidal Properties of Photocatalytic Coating on Glass against a Model Human Coronavirus Ángel L. Álvarez, Kevin P. Dalton, Inés Nicieza, Fabio A. Abade Dos Santos, Pilar de la Peña, Pedro Domínguez, et al. (+3)
841 [GO] mSphere 2022―May―02 Analysis of SARS-CoV-2 in Nasopharyngeal Samples from Patients with COVID-19 Illustrates Population Variation and Diverse Phenotypes, Placing the Growth Properties of Variants of Concern in Context with Other Lineages Tessa Prince, Xiaofeng Dong, Rebekah Penrice-Randal, Nadine Randle, Catherine Hartley, Hannah Goldswain, et al. (+14)
842 [GO] Microbiology Spectrum 2022―May―02 A CLEIA Antigen Assay in Diagnosis and Follow-Up of SARS-CoV-2-Positive Subjects Salvatore Scarcella, Azzurra Rizzelli, Andrea Fontana, Chiara Zecca, Giancarlo Pasanisi, Katia Musio, et al. (+7)
843 [GO] Microbiology Spectrum 2022―Apr―28 Serological Follow-Up Study Indicates High Seasonal Coronavirus Infection and Reinfection Rates in Early Childhood Pekka Kolehmainen, Jemna Heroum, Pinja Jalkanen, Moona Huttunen, Laura Toivonen, Varpu Marjomäki, et al. (+7)
844 [GO] mBio 2022―Apr―27 Status of Humoral and Cellular Immune Responses within 12 Months following CoronaVac Vaccination against COVID-19 Wei Zhao, Weixin Chen, Juan Li, Meng Chen, Qin Li, Min Lv, et al. (+9)
845 [GO] mBio 2022―Apr―26 Gain-of-Signal Assays for Probing Inhibition of SARS-CoV-2 M pro /3CL pro in Living Cells Seyed Arad Moghadasi, Morgan A. Esler, Yuka Otsuka, Jordan T. Becker, Sofia N. Moraes, Constance B. Anderson, et al. (+12)
846 [GO] Microbiology Spectrum 2022―Apr―26 Screening of the Pandemic Response Box Reveals an Association between Antifungal Effects of MMV1593537 and the Cell Wall of Cryptococcus neoformans , Cryptococcus deuterogattii , and Candida auris Haroldo C. de Oliveira, Rafael F. Castelli, Flavia C. G. Reis, Kirandeep Samby, Joshua D. Nosanchuk, Lysangela R. Alves, et al. (+2)
847 [GO] Microbiology Spectrum 2022―Apr―25 Interepidemic Respiratory Syncytial Virus during the COVID-19 Pandemic ChunHong Huang, Malaya K. Sahoo, Michelle Verghese, Mamdouh Sibai, Daniel Solis, Kenji O. Mfuh, et al. (+5)
848 [GO] mBio 2022―Apr―25 Evidence for an ACE2-Independent Entry Pathway That Can Protect from Neutralization by an Antibody Used for COVID-19 Therapy Markus Hoffmann, Anzhalika Sidarovich, Prerna Arora, Nadine Krüger, Inga Nehlmeier, Amy Kempf, et al. (+9)
849 [GO] mBio 2022―Apr―25 Epidemiology and Genomic Characterization of Two Novel SARS-Related Coronaviruses in Horseshoe Bats from Guangdong, China Linmiao Li, Libiao Zhang, Jiabin Zhou, Xiangyang He, Yepin Yu, Ping Liu, et al. (+4)
850 [GO] mBio 2022―Apr―25 Structure of a Vaccine-Induced, Germline-Encoded Human Antibody Defines a Neutralizing Epitope on the SARS-CoV-2 Spike N-Terminal Domain Clara G. Altomare, Daniel C. Adelsberg, Juan Manuel Carreno, Iden A. Sapse, Fatima Amanat, Ali H. Ellebedy, et al. (+4)
851 [GO] mBio 2022―Apr―25 Porcine Reproductive and Respiratory Syndrome Virus Adapts Antiviral Innate Immunity via Manipulating MALT1 Han Gu, Suya Zheng, Guangwei Han, Haotian Yang, Zhuofan Deng, Zehui Liu, et al. (+2)
852 [GO] Journal of Clinical Microbiology 2022―Apr―25 Evaluation of a Rapid and Accessible Reverse Transcription-Quantitative PCR Approach for SARS-CoV-2 Variant of Concern Identification Priscilla S.-W. Yeung, Hannah Wang, Mamdouh Sibai, Daniel Solis, Fumiko Yamamoto, Naomi Iwai, et al. (+14)
853 [GO] Journal of Clinical Microbiology 2022―Apr―20 Limit of Detection for Rapid Antigen Testing of the SARS-CoV-2 Omicron and Delta Variants of Concern Using Live-Virus Culture Sydney Stanley, Donald J. Hamel, Ian D. Wolf, Stefan Riedel, Sanjucta Dutta, Elisa Contreras, et al. (+6)
854 [GO] Journal of Virology 2022―Apr―14 Single-Cell Landscape of Lungs Reveals Key Role of Neutrophil-Mediated Immunopathology during Lethal SARS-CoV-2 Infection Xiao-Shuang Zheng, Qi Wang, Juan Min, Xu-Rui Shen, Qian Li, Qiu-Chen Zhao, et al. (+14)
855 [GO] mBio 2022―Apr―14 Erratum for Vanderheiden et al., “CCR2 Signaling Restricts SARS-CoV-2 Infection” Abigail Vanderheiden, Jeronay Thomas, Allison L. Soung, Meredith E. Davis-Gardner, Katharine Floyd, Fengzhi Jin, et al. (+12)
856 [GO] Microbiology Resource Announcements 2022―Apr―14 Coding-Complete Sequence of a SARS-CoV-2 Strain from an Omicron (B.1.1.529+BA.1) Variant Detected in Morocco Taha Chouati, Mouhssine Hemlali, Marouane Melloul, Sanaa Alaoui-Amine, Safae Rhoulam, Hamza Ghamaz, et al. (+11)
857 [GO] mBio 2022―Apr―14 The Delta SARS-CoV-2 Variant of Concern Induces Distinct Pathogenic Patterns of Respiratory Disease in K18-hACE2 Transgenic Mice Compared to the Ancestral Strain from Wuhan Xiang Liu, Helen Mostafavi, Wern Hann Ng, Joseph R. Freitas, Nicholas J. C. King, Ali Zaid, et al. (+3)
858 [GO] Microbiology Resource Announcements 2022―Apr―13 Report of SARS-CoV-2 BA.1 Lineage in Morocco Safae El Mazouri, Houda Bendani, Nasma Boumajdi, Mhammed Chaoui Roqai, Tarik Aanniz, Myriam Seffar, et al. (+8)
859 [GO] Microbiology Spectrum 2022―Apr―12 Semi-Mechanistic Pharmacokinetic-Pharmacodynamic Model of Camostat Mesylate-Predicted Efficacy against SARS-CoV-2 in COVID-19 Yuri Kosinsky, Kirill Peskov, Donald R. Stanski, Diana Wetmore, Joseph Vinetz, Abimbola O. Kolawole
860 [GO] Journal of Microbiology and Biology Education 2022―Apr―12 Online and In-Person Learning Preferences during the COVID-19 Pandemic among Students Attending the City University of New York Diane Price Banks, Sasha M. Vergez
861 [GO] Microbiology Spectrum 2022―Apr―12 Differences in Transmission between SARS-CoV-2 Alpha (B.1.1.7) and Delta (B.1.617.2) Variants Camino Trobajo-Sanmartín, Iván Martínez-Baz, Ana Miqueleiz, Miguel Fernández-Huerta, Cristina Burgui, Itziar Casado, et al. (+5)
862 [GO] Microbiology Spectrum 2022―Apr―12 Clinical Evaluation of BD Veritor SARS-CoV-2 and Flu A+B Assay for Point-Of-Care System Katherine Christensen, Huimiao Ren, Shirley Chen, Charles K. Cooper, Stephen Young, Eleanor A. Powell
863 [GO] Microbiology Spectrum 2022―Apr―12 Changing Patterns of SARS-CoV-2 Seroprevalence among Canadian Blood Donors during the Vaccine Era Cassandra N. Reedman, Steven J. Drews, Qi-Long Yi, Chantale Pambrun, Sheila F. O’Brien, Susan Realegeno
864 [GO] Microbiology Spectrum 2022―Apr―12 Wastewater-Based SARS-CoV-2 Surveillance in Northern New England Diana M. Toledo, Ashlee A. Robbins, Torrey L. Gallagher, Kenneth Chase Hershberger, Rachael E. Barney, Sabrina M. Salmela, et al. (+9)
865 [GO] Journal of Virology 2022―Apr―12 Single Immunization with Recombinant ACAM2000 Vaccinia Viruses Expressing the Spike and the Nucleocapsid Proteins Protects Hamsters against SARS-CoV-2-Caused Clinical Disease Yvon Deschambault, Jessie Lynch, Bryce Warner, Kevin Tierney, Denise Huynh, Robert Vendramelli, et al. (+15)
866 [GO] Journal of Microbiology and Biology Education 2022―Apr―11 New Online Accommodations Are Not Enough: The Mismatch between Student Needs and Supports Given for Students with Disabilities during the COVID-19 Pandemic Logan E. Gin, Danielle C. Pais, Kristen D. Parrish, Sara E. Brownell, Katelyn M. Cooper
867 [GO] Journal of Virology 2022―Apr―07 The COVID-19 Humoral Immunological Status Induced by CoronaVac and AstraZeneca Vaccines Significantly Benefits from a Booster Shot with the Pfizer Vaccine Jessica Pires Farias, Patrícia de Souza da Silva, Mayanna Moreira Costa Fogaça, Itana Vivian Rocha Santana, Wilson Barros Luiz, Alexander Birbrair, et al. (+2)
868 [GO] Journal of Microbiology and Biology Education 2022―Apr―07 Microbiology Laboratory Simulations: From a Last-Minute Resource during the Covid-19 Pandemic to a Valuable Learning Tool to Retain-A Semester Microbiology Laboratory Curriculum That Uses Labster as Prelaboratory Activity Manuela Tripepi
869 [GO] Journal of Virology 2022―Apr―07 Structural Basis of the Main Proteases of Coronavirus Bound to Drug Candidate PF-07321332 Jian Li, Cheng Lin, Xuelan Zhou, Fanglin Zhong, Pei Zeng, Yang Yang, et al. (+9)
870 [GO] Journal of Virology 2022―Apr―07 SARS-CoV-2 nsp5 Exhibits Stronger Catalytic Activity and Interferon Antagonism than Its SARS-CoV Ortholog Jiyao Chen, Zhuang Li, Jiahui Guo, Shangen Xu, Junwei Zhou, Qian Chen, et al. (+6)
871 [GO] Microbiology Spectrum 2022―Apr―07 The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico Selene Zárate, Blanca Taboada, José Esteban Muñoz-Medina, Pavel Iša, Alejandro Sanchez-Flores, Celia Boukadida, et al. (+31)
872 [GO] Journal of Clinical Microbiology 2022―Apr―07 Multicenter Evaluation of the BioFire Respiratory Panel 2.1 (RP2.1) for Detection of SARS-CoV-2 in Nasopharyngeal Swab Samples Gregory J. Berry, Wei Zhen, Elizabeth Smith, Ryhana Manji, Suzane Silbert, Amorce Lima, et al. (+6)
873 [GO] Microbiology Spectrum 2022―Apr―07 Simultaneous Measurement of IgM and IgG Antibodies to SARS-CoV-2 Spike, RBD, and Nucleocapsid Multiplexed in a Single Assay on the xMAP INTELLIFLEX DR-SE Flow Analyzer Andrew Cameron, Jessica L. Bohrhunter, Claire A. Porterfield, Rupinder Mangat, Michael H. Karasick, Zachary Pearson, et al. (+3)
874 [GO] Microbiology Spectrum 2022―Apr―06 Longer Intervals before Vaccination Increase Spike Antibody Titers in Individuals Previously Infected with SARS-CoV-2 Xiuqiong Bi, Tomoko Takayama, Masaharu Tokoro, Tetsushi Mizuno, Akinori Hara, Hiroyuki Nakamura, et al. (+5)
875 [GO] Journal of Microbiology and Biology Education 2022―Apr―05 Why Did Students Report Lower Test Anxiety during the COVID-19 Pandemic? Sharday N. Ewell, Chloe C. Josefson, Cissy J. Ballen
876 [GO] Journal of Microbiology and Biology Education 2022―Apr―05 Education Racial and Gender Disparities in COVID-19 Worry, Stress, and Food Insecurities across Undergraduate Biology Students at a Southeastern University Kelly M. Correia, Shannon R. Bierma, Sophia D. Houston, Madison T. Nelson, Khushwant S. Pannu, Chase M. Tirman, et al. (+7)
877 [GO] Applied and Environmental Microbiology 2022―Apr―05 Detection of SARS-CoV-2 Variants Mu, Beta, Gamma, Lambda, Delta, Alpha, and Omicron in Wastewater Settled Solids Using Mutation-Specific Assays Is Associated with Regional Detection of Variants in Clinical Samples Marlene Wolfe, Bridgette Hughes, Dorothea Duong, Vikram Chan-Herur, Krista R. Wigginton, Bradley J. White, et al. (+2)
878 [GO] Journal of Microbiology and Biology Education 2022―Apr―04 We Can’t Fail Again: Arguments for Professional Development in the Wake of COVID-19 Lisa L. Walsh, Robert J. Bills, Stanley M. Lo, Emily M. Walter, Benjamin E. Weintraub, Michelle D. Withers
879 [GO] Microbiology Spectrum 2022―Apr―04 Analysis of Clinical Course and Vaccination Influence on Serological Response in COVID-19 Convalescents Justyna Adamczuk, Piotr Czupryna, Justyna Dunaj-Małyszko, Ewelina Kruszewska, Sławomir Pancewicz, Karol Kamiński, et al. (+4)
880 [GO] Journal of Clinical Microbiology 2022―Apr―04 SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time Fiona Ashford, Angus Best, Steven J. Dunn, Zahra Ahmed, Henna Siddiqui, Jordan Melville, et al. (+14)
881 [GO] Microbiology Spectrum 2022―Mar―31 Rapid Quantitative Point-Of-Care Diagnostic Test for Post COVID-19 Vaccination Antibody Monitoring Maria E. Moeller, Frederik N. Engsig, Melanie Bade, Jeppe Fock, Pearlyn Pah, Anna Louise Soerensen, et al. (+4)
882 [GO] mBio 2022―Mar―31 Are Unique Regional Factors the Missing Link in India’s COVID-19-Associated Mucormycosis Crisis? Jessy Skaria, Teny M. John, Shibu Varkey, Dimitrios P. Kontoyiannis, Tom Chiller
883 [GO] Microbiology Spectrum 2022―Mar―30 Effects of COVID-19 on Blood Culture Contamination at a Tertiary Care Academic Medical Center Brianna Sacchetti, Justin Travis, Lisa L. Steed, Ginny Webb, Eleanor A. Powell
884 [GO] mBio 2022―Mar―30 The Impact of Evolving SARS-CoV-2 Mutations and Variants on COVID-19 Vaccines Gary McLean, Jeremy Kamil, Benhur Lee, Penny Moore, Thomas F. Schulz, Alexander Muik, et al. (+4)
885 [GO] Microbiology Spectrum 2022―Mar―30 Update on SARS-CoV-2 Omicron Variant of Concern and Its Peculiar Mutational Profile Mohammad Alkhatib, Romina Salpini, Luca Carioti, Francesca Alessandra Ambrosio, Stefano D’Anna, Leonardo Duca, et al. (+9)
886 [GO] Journal of Virology 2022―Mar―30 Possible Cross-Reactivity of Feline and White-Tailed Deer Antibodies against the SARS-CoV-2 Receptor Binding Domain Trevor J. Hancock, Peyton Hickman, Niloo Kazerooni, Melissa Kennedy, Stephen A. Kania, Michelle Dennis, et al. (+7)
887 [GO] Microbiology Spectrum 2022―Mar―29 SARS-CoV-2 Point Mutation and Deletion Spectra and Their Association with Different Disease Outcomes Brenda Martínez-González, María Eugenia Soria, Lucía Vázquez-Sirvent, Cristina Ferrer-Orta, Rebeca Lobo-Vega, Pablo Mínguez, et al. (+21)
888 [GO] Microbiology Spectrum 2022―Mar―29 The Usefulness of Antigen Testing in Predicting Contagiousness in COVID-19 Tulio J. Lopera, Juan Carlos Alzate-Ángel, Francisco J. Díaz, María T. Rugeles, Wbeimar Aguilar-Jiménez, Eleanor A. Powell
889 [GO] Microbiology and Molecular Biology Reviews 2022―Mar―28 Molecular Virology of SARS-CoV-2 and Related Coronaviruses Yu-An Kung, Kuo-Ming Lee, Huan-Jung Chiang, Sheng-Yu Huang, Chung-Jung Wu, Shin-Ru Shih
890 [GO] Journal of Virology 2022―Mar―28 Inactivated SARS-CoV-2 Vaccine Shows Cross-Protection against Bat SARS-Related Coronaviruses in Human ACE2 Transgenic Mice Mei-Qin Liu, Ren-Di Jiang, Jing Guo, Ying Chen, Dong-Sheng Yang, Xi Wang, et al. (+8)
891 [GO] Journal of Virology 2022―Mar―28 Structural Basis for Human Receptor Recognition by SARS-CoV Omicron Variant BA.1 Qibin Geng, Ke Shi, Gang Ye, Wei Zhang, Hideki Aihara, Fang Li, Tom Gallagher
892 [GO] Journal of Virology 2022―Mar―28 Distinctive Roles of Furin and TMPRSS2 in SARS-CoV-2 Infectivity Rachid Essalmani, Jaspreet Jain, Delia Susan-Resiga, Ursula Andréo, Alexandra Evagelidis, Rabeb Mouna Derbali, et al. (+13)
893 [GO] mBio 2022―Mar―28 Viral Mimicry of Interleukin-17A by SARS-CoV-2 ORF8 Xin Wu, Tian Xia, Woo-Jin Shin, Kwang-Min Yu, Wooram Jung, Alexandra Herrmann, et al. (+11)
894 [GO] Microbiology Resource Announcements 2022―Mar―28 Genome Sequences of 408 SARS-CoV-2 Strains Obtained from Nasopharyngeal Swabs in La Araucanía Region, Southern Chile Michel Abanto Marin, Benjamín Leyton-Carcaman, Claudio Vázquez, Benjamín Durán-Vinet, Katterin Bobadilla, Claudio Rodriguez-Ruiz, et al. (+9)
895 [GO] Journal of Microbiology and Biology Education 2022―Mar―28 Increasing Student Engagement through Course Attributes, Community, and Classroom Technology: Lessons from the Pandemic Cristine Donham, Cathy Pohan, Erik Menke, Petra Kranzfelder
896 [GO] Journal of Clinical Microbiology 2022―Mar―28 The SARS-CoV-2 Omicron Variant Does Not Have Higher Nasal Viral Loads Compared to the Delta Variant in Symptomatic and Asymptomatic Individuals Andrew M. Laitman, Joshua A. Lieberman, Noah G. Hoffman, Pavitra Roychoudhury, Patrick C. Mathias, Alexander L. Greninger, Yi-Wei Tang
897 [GO] Journal of Clinical Microbiology 2022―Mar―28 Impact of SARS-CoV-2 Variants on the Analytical Sensitivity of rRT-PCR Assays Yuqing Chen, Yanxi Han, Jing Yang, Yu Ma, Jinming Li, Rui Zhang, Yi-Wei Tang
898 [GO] Journal of Clinical Microbiology 2022―Mar―25 Prognostic Impact of Bronchoalveolar Lavage Fluid Galactomannan and Aspergillus Culture Results on Survival in COVID-19 Intensive Care Unit Patients: a Post Hoc Analysis from the European Confederation of Medical Mycology (ECMM) COVID-19-Associated Pulmonary Aspergillosis Study Daniele Roberto Giacobbe, Juergen Prattes, Joost Wauters, Silvia Dettori, Alessio Signori, Jon Salmanton-García, et al. (+16)
899 [GO] Journal of Clinical Microbiology 2022―Mar―25 Performance of COVIDSeq and Swift Normalase Amplicon SARS-CoV-2 Panels for SARS-CoV-2 Genome Sequencing: Practical Guide and Combining FASTQ Strategy Hosoon Choi, Munok Hwang, Dhammika H. Navarathna, Jing Xu, Janell Lukey, Chetan Jinadatha, Angela M. Caliendo
900 [GO] Journal of Clinical Microbiology 2022―Mar―25 Highly Sensitive Lineage Discrimination of SARS-CoV-2 Variants through Allele-Specific Probe PCR Jeremy Ratcliff, Farah Al-Beidh, Sagida Bibi, David Bonsall, Sue Ann Costa Clemens, Lise Estcourt, et al. (+23)
901 [GO] Microbiology Resource Announcements 2022―Mar―24 Genome Sequences of 25 SARS-CoV-2 Sublineage B.1.1.529 Omicron Strains in Bangladesh Omar Hamza Bin Manjur, Mokibul Hassan Afrad, Manjur Hossain Khan, Mohabbat Hossain, Zannat Kawser, Ahmed Nawsher Alam, et al. (+16)
902 [GO] Journal of Microbiology and Biology Education 2022―Mar―23 Student Anxiety and Engagement with Online Instruction across Two Semesters of COVID-19 Disruptions Eric Pennino, Catherine Ishikawa, Sayonita Ghosh Hajra, Navneet Singh, Kelly McDonald
903 [GO] Microbiology Spectrum 2022―Mar―23 High Seroprevalence of SARS-CoV-2 in White-Tailed Deer (Odocoileus virginianus) at One of Three Captive Cervid Facilities in Texas Christopher M. Roundy, Chase M. Nunez, Logan F. Thomas, Lisa D. Auckland, Wendy Tang, Jack J. Richison, et al. (+8)
904 [GO] Journal of Virology 2022―Mar―23 Heparanase Blockade as a Novel Dual-Targeting Therapy for COVID-19 Jingyu Xiang, Mijia Lu, Min Shi, Xiaogang Cheng, Kristin A. Kwakwa, Jennifer L. Davis, et al. (+14)
905 [GO] Microbiology Spectrum 2022―Mar―23 Multiple Routes of Antibody-Dependent Enhancement of SARS-CoV-2 Infection Kosuke Okuya, Takanari Hattori, Takeshi Saito, Yoshihiro Takadate, Michihito Sasaki, Wakako Furuyama, et al. (+6)
906 [GO] Journal of Clinical Microbiology 2022―Mar―23 Implementation of a Streamlined SARS-CoV-2 Whole-Genome Sequencing Assay for Expeditious Surveillance during the Emergence of the Omicron Variant John A. Fissel, Javier Mestas, Pei Ying Chen, Jessica Flores-Vazquez, Thao T. Truong, Moiz Bootwalla, et al. (+4)
907 [GO] Microbiology Spectrum 2022―Mar―22 Longitudinal SARS-CoV-2 Testing among the Unvaccinated Is Punctuated by Intermittent Positivity and Variable Rates of Increasing Cycle Threshold Values Shawn E. Hawken, Subhashini A. Sellers, Jason R. Smedberg, Jeremy D. Ward, Avian M. Elliott, Herbert C. Whinna, et al. (+3)
908 [GO] Journal of Virology 2022―Mar―21 Coronavirus Porcine Deltacoronavirus Upregulates MHC Class I Expression through RIG-I/IRF1-Mediated NLRC5 Induction Xiang Liu, Lingdan Yin, Mei Xue, Jianfei Chen, Liang Li, Fang Fu, et al. (+3)
909 [GO] Microbiology Spectrum 2022―Mar―21 Comparison of Saliva and Midturbinate Swabs for Detection of SARS-CoV-2 Jianyu Lai, Jennifer German, Filbert Hong, S.-H. Sheldon Tai, Kathleen M. McPhaul, Donald K. Milton, Heba H. Mostafa
910 [GO] mSystems 2022―Mar―21 Mapping Data to Deep Understanding: Making the Most of the Deluge of SARS-CoV-2 Genome Sequences Bahrad A. Sokhansanj, Gail L. Rosen, Marta M. Gaglia
911 [GO] Microbiology Spectrum 2022―Mar―21 The Effect of Vaccine Type and SARS-CoV-2 Lineage on Commercial SARS-CoV-2 Serologic and Pseudotype Neutralization Assays in mRNA Vaccine Recipients Nicole V. Tolan, Amy C. Sherman, Guohai Zhou, Katherine G. Nabel, Michaël Desjardins, Stacy Melanson, et al. (+13)
912 [GO] Microbiology Spectrum 2022―Mar―21 SARS-CoV-2 Lineage Tracking, and Evolving Trends Seen during Three Consecutive Peaks of Infection in Delhi, India: a Clinico-Genomic Study Pramod Gautam, Diptanu Paul, Varun Suroliya, Rahul Garg, Reshu Agarwal, Santanu Das, et al. (+8)
913 [GO] Microbiology Spectrum 2022―Mar―21 Profiling of SARS-CoV-2 Subgenomic RNAs in Clinical Specimens Zigui Chen, Rita Way Yin Ng, Grace Lui, Lowell Ling, Chit Chow, Apple Chung Man Yeung, et al. (+7)
914 [GO] mBio 2022―Mar―17 Broad Neutralization of SARS-CoV-2 Variants, Including Omicron, following Breakthrough Infection with Delta in COVID-19-Vaccinated Individuals Thomas Lechmere, Luke B. Snell, Carl Graham, Jeffrey Seow, Zayed A. Shalim, Themoula Charalampous, et al. (+7)
915 [GO] mSphere 2022―Mar―17 A 265-Nanometer High-Power Deep-UV Light-Emitting Diode Rapidly Inactivates SARS-CoV-2 Aerosols Hiroshi Ueki, Mutsumi Ito, Yuri Furusawa, Seiya Yamayoshi, Shin-ichiro Inoue, Yoshihiro Kawaoka, Nicole M. Bouvier
916 [GO] Journal of Clinical Microbiology 2022―Mar―16 Clinical Laboratory Budgets during the COVID-19 Pandemic: a Micro-Comic Strip Alexander J. McAdam, Carey-Ann D. Burnham
917 [GO] Microbiology Spectrum 2022―Mar―16 Diagnostic Performance of Six Rapid Antigen Tests for SARS-CoV-2 Jessica Navero-Castillejos, Climent Casals-Pascual, Sofía Narváez, Genoveva Cuesta, Juan Carlos Hurtado, Mariana Fernandez, et al. (+9)
918 [GO] Journal of Virology 2022―Mar―16 When Poly(A) Binding Proteins Meet Viral Infections, Including SARS-CoV-2 Jie Gao, Yan-Dong Tang, Wei Hu, Chunfu Zheng, Rozanne M. Sandri-Goldin
919 [GO] Journal of Virology 2022―Mar―16 SARS-CoV-2 Evolution: On the Sudden Appearance of the Omicron Variant Ben Berkhout, Elena Herrera-Carrillo, Tom Gallagher
920 [GO] Microbiology Spectrum 2022―Mar―16 Neutralizing Monoclonal Antibodies Inhibit SARS-CoV-2 Infection through Blocking Membrane Fusion Chia-Jung Li, Tai-Ling Chao, Ting-Yu Chang, Chia-Chun Hsiao, De-Chao Lu, Yi-Wei Chiang, et al. (+8)
921 [GO] Journal of Virology 2022―Mar―16 Host Cells Actively Resist Porcine Reproductive and Respiratory Syndrome Virus Infection via the IRF8-MicroRNA-10a-SRP14 Regulatory Pathway Zifang Zheng, Xiali Fu, Xue Ling, Huanhuan Sun, Yang Li, Zhiqian Ma, et al. (+4)
922 [GO] mBio 2022―Mar―15 Epistasis at the SARS-CoV-2 Receptor-Binding Domain Interface and the Propitiously Boring Implications for Vaccine Escape Nash D. Rochman, Guilhem Faure, Yuri I. Wolf, Peter L. Freddolino, Feng Zhang, Eugene V. Koonin, Michael S. Diamond
923 [GO] Applied and Environmental Microbiology 2022―Mar―14 Data on Transfer of Human Coronavirus SARS-CoV-2 from Foods and Packaging Materials to Gloves Indicate That Fomite Transmission Is of Minor Importance S. Butot, S. Zuber, M. Moser, L. Baert, Christopher A. Elkins
924 [GO] mSphere 2022―Mar―14 Correlation of Immunogenicity and Reactogenicity of BNT162b2 and CoronaVac SARS-CoV-2 Vaccines Ruiqi Zhang, Ka-Yi Leung, Danlei Liu, Yujing Fan, Lu Lu, Pui-Chun Chan, et al. (+6)
925 [GO] Applied and Environmental Microbiology 2022―Mar―14 Design of SARS-CoV-2 Variant-Specific PCR Assays Considering Regional and Temporal Characteristics Chamteut Oh, Palash Sashittal, Aijia Zhou, Leyi Wang, Mohammed El-Kebir, Thanh H. Nguyen, Christopher A. Elkins
926 [GO] Microbiology Spectrum 2022―Mar―14 Specific Detection of SARS-CoV-2 Variants B.1.1.7 (Alpha) and B.1.617.2 (Delta) Using a One-Step Quantitative PCR Assay Oran Erster, Ella Mendelson, Areej Kabat, Virginia Levy, Batya Mannasse, Hadar Assraf, et al. (+12)
927 [GO] Microbiology Spectrum 2022―Mar―10 Performance of Immunoglobulin G Serology on Finger Prick Capillary Dried Blood Spot Samples to Detect a SARS-CoV-2 Antibody Response Aidan M. Nikiforuk, Brynn McMillan, Sofia R. Bartlett, Ana Citlali Márquez, Tamara Pidduck, Jesse Kustra, et al. (+11)
928 [GO] mBio 2022―Mar―10 Characterization of SARS-CoV-2 Variants B.1.617.1 (Kappa), B.1.617.2 (Delta), and B.1.618 by Cell Entry and Immune Evasion Wenlin Ren, Xiaohui Ju, Mingli Gong, Jun Lan, Yanying Yu, Quanxin Long, et al. (+11)
929 [GO] Clinical Microbiology Reviews 2022―Mar―09 COVID-19 Convalescent Plasma and Clinical Trials: Understanding Conflicting Outcomes Daniele Focosi, Massimo Franchini, Liise-anne Pirofski, Thierry Burnouf, Nigel Paneth, Michael J. Joyner, Arturo Casadevall
930 [GO] Microbiology Spectrum 2022―Mar―09 Vaccine-Induced Antibody Responses against SARS-CoV-2 Variants-Of-Concern Six Months after the BNT162b2 COVID-19 mRNA Vaccination Pinja Jalkanen, Pekka Kolehmainen, Anu Haveri, Moona Huttunen, Larissa Laine, Pamela Österlund, et al. (+13)
931 [GO] Journal of Virology 2022―Mar―09 Increased Sensitivity of SARS-CoV-2 to Type III Interferon in Human Intestinal Epithelial Cells Camila Metz-Zumaran, Carmon Kee, Patricio Doldan, Cuncai Guo, Megan L. Stanifer, Steeve Boulant, Kanta Subbarao
932 [GO] mBio 2022―Mar―08 Structural Dynamics and Molecular Evolution of the SARS-CoV-2 Spike Protein Kyle A. Wolf, Jason C. Kwan, Jeremy P. Kamil, Vinayaka R. Prasad
933 [GO] Clinical Microbiology Reviews 2022―Mar―08 Digital PCR Applications in the SARS-CoV-2/COVID-19 Era: a Roadmap for Future Outbreaks Raphael Nyaruaba, Caroline Mwaliko, David Dobnik, Pavel Neužil, Patrick Amoth, Matilu Mwau, et al. (+3)
934 [GO] mBio 2022―Mar―07 Nutritional Modulation of Gut Microbiota Alleviates Severe Gastrointestinal Symptoms in a Patient with Post-Acute COVID-19 Syndrome Ying Wang, Guojun Wu, Liping Zhao, Weizheng Wang, Vaughn S. Cooper
935 [GO] Infection and Immunity 2022―Mar―07 Bacillus -Based Direct-Fed Microbial Reduces the Pathogenic Synergy of a Coinfection with Salmonella enterica Serovar Choleraesuis and Porcine Reproductive and Respiratory Syndrome Virus Federico A. Zuckermann, Robert Husmann, WeiYu Chen, Patrick Roady, Janice Pfeiff, Kyle R. Leistikow, et al. (+5)
936 [GO] Microbiology Spectrum 2022―Mar―07 Correlation Analysis between Gut Microbiota Alterations and the Cytokine Response in Patients with Coronavirus Disease during Hospitalization Taketoshi Mizutani, Aya Ishizaka, Michiko Koga, Kazuhiko Ikeuchi, Makoto Saito, Eisuke Adachi, et al. (+10)
937 [GO] Journal of Clinical Microbiology 2022―Mar―07 Using Spike Gene Target Failure to Estimate Growth Rate of the Alpha and Omicron Variants of SARS-CoV-2 Benjamin F. Smith, Peter F. Graven, Doris Y. Yang, Siouxzanna M. Downs, Donna E. Hansel, Guang Fan, et al. (+2)
938 [GO] Microbiology Spectrum 2022―Mar―07 Conserved Pattern and Potential Role of Recurrent Deletions in SARS-CoV-2 Evolution Shenghui Weng, Hangyu Zhou, Chengyang Ji, Liang Li, Na Han, Rong Yang, et al. (+3)
939 [GO] Microbiology Spectrum 2022―Mar―07 Diagnostic Value of a SARS-CoV-2 Rapid Test Kit for Detection of Neutralizing Antibodies as a Point-of-Care Surveillance Test Michele Mun Hei Chan, Ka-Yi Leung, Ricky Rui Qi Zhang, Danlei Liu, Yujing Fan, Matthew Ka Wa Khong, et al. (+6)
940 [GO] Journal of Clinical Microbiology 2022―Mar―07 Immunity to SARS-CoV-2: What Do We Know and Should We Be Testing for It? Anisha Misra, Elitza S. Theel, Romney M. Humphries
941 [GO] mBio 2022―Mar―01 Minimal Crossover between Mutations Associated with Omicron Variant of SARS-CoV-2 and CD8 + T-Cell Epitopes Identified in COVID-19 Convalescent Individuals Andrew D. Redd, Alessandra Nardin, Hassen Kared, Evan M. Bloch, Brian Abel, Andrew Pekosz, et al. (+5)
942 [GO] mBio 2022―Mar―01 The FDA-Approved Drug Cobicistat Synergizes with Remdesivir To Inhibit SARS-CoV-2 Replication In Vitro and Decreases Viral Titers and Disease Progression in Syrian Hamsters Iart Luca Shytaj, Mohamed Fares, Lara Gallucci, Bojana Lucic, Mahmoud M. Tolba, Liv Zimmermann, et al. (+25)
943 [GO] mBio 2022―Mar―01 Contribution of Host miRNA-223-3p to SARS-CoV-Induced Lung Inflammatory Pathology Lucía Morales, Juan Carlos Oliveros, Luis Enjuanes, Isabel Sola, Xiang-Jin Meng
944 [GO] Journal of Virology 2022―Feb―28 Omicron: what makes the latest SARS-CoV-2 variant of concern so concerning? Christoph Jung, Dorota Kmiec, Lennart Koepke, Fabian Zech, Timo Jacob, Konstantin M. J. Sparrer, Frank Kirchhoff
945 [GO] mSphere 2022―Feb―28 Adenovirus 5 Vectors Expressing SARS-CoV-2 Proteins Scott Bachus, Nikolas Akkerman, Lauren Fulham, Drayson Graves, Caelan Stephanson, Harram Memon, et al. (+3)
946 [GO] Microbiology Spectrum 2022―Feb―23 Dynamic Changes of the Blood Chemistry in Syrian Hamsters Post-Acute COVID-19 Chi-Ju Hsu, Wen-Chin Lin, Yu-Ching Chou, Chuen-Mi Yang, Hsueh-Ling Wu, Yun-Hsiang Cheng, et al. (+5)
947 [GO] Microbiology Spectrum 2022―Feb―23 Evaluation of the Levels of Peripheral CD3 + , CD4 + , and CD8 + T Cells and IgG and IgM Antibodies in COVID-19 Patients at Different Stages of Infection Waleed Aljabr, Ahod Al-Amari, Basma Abbas, Alaa Karkashan, Saad Alamri, Mohammed Alnamnakani, et al. (+2)
948 [GO] Microbiology Spectrum 2022―Feb―23 Implementation and Extended Evaluation of the Euroimmun Anti-SARS-CoV-2 IgG Assay and Its Contribution to the United Kingdom’s COVID-19 Public Health Response Ashley David Otter, Abbie Bown, Silvia D’Arcangelo, Daniel Bailey, Amanda Semper, Jacqueline Hewson, et al. (+21)
949 [GO] Microbiology Spectrum 2022―Feb―23 Convalescent Plasma for Preventing Critical Illness in COVID-19: a Phase 2 Trial and Immune Profile Jeffrey M. Sturek, Tania A. Thomas, James D. Gorham, Chelsea A. Sheppard, Allison H. Raymond, Kristen Petros De Guex, et al. (+14)
950 [GO] Microbiology Spectrum 2022―Feb―23 Limited Recognition of Highly Conserved Regions of SARS-CoV-2 Srividhya Swaminathan, Katie E. Lineburg, George R. Ambalathingal, Pauline Crooks, Emma J. Grant, Sonali V. Mohan, et al. (+12)
951 [GO] Microbiology Spectrum 2022―Feb―23 The Comparability of Anti-Spike SARS-CoV-2 Antibody Tests is Time-Dependent: a Prospective Observational Study Thomas Perkmann, Patrick Mucher, Nicole Perkmann-Nagele, Astrid Radakovics, Manuela Repl, Thomas Koller, et al. (+8)
952 [GO] Microbiology Spectrum 2022―Feb―23 Spread of Gamma (P.1) Sub-Lineages Carrying Spike Mutations Close to the Furin Cleavage Site and Deletions in the N-Terminal Domain Drives Ongoing Transmission of SARS-CoV-2 in Amazonas, Brazil Felipe Gomes Naveca, Valdinete Nascimento, Victor Souza, André de Lima Corado, Fernanda Nascimento, George Silva, et al. (+37)
953 [GO] Microbiology Spectrum 2022―Feb―23 Evaluation of the Performance of a Multiplexed Serological Assay in the Detection of SARS-CoV-2 Infections in a Predominantly Vaccinated Population Michael Asamoah-Boaheng, David M. Goldfarb, Vilte Barakauskas, Tracy L. Kirkham, Paul A. Demers, Mohammad Ehsanul Karim, et al. (+7)
954 [GO] Microbiology Spectrum 2022―Feb―23 Estimating SARS-CoV-2 Seroprevalence in Canadian Blood Donors, April 2020 to March 2021: Improving Accuracy with Multiple Assays Ashleigh R. Tuite, David Fisman, Kento T. Abe, Bhavisha Rathod, Adrian Pasculescu, Karen Colwill, et al. (+5)
955 [GO] Microbiology Spectrum 2022―Feb―23 Emergency SARS-CoV-2 Variants of Concern: Novel Multiplex Real-Time RT-PCR Assay for Rapid Detection and Surveillance Hsing-Yi Chung, Ming-Jr Jian, Chih-Kai Chang, Jung-Chung Lin, Kuo-Ming Yeh, Chien-Wen Chen, et al. (+8)
956 [GO] Antimicrobial Agents and Chemotherapy 2022―Feb―22 Efficacy and Safety of SARS-CoV-2 Neutralizing Antibody JS016 in Hospitalized Chinese Patients with COVID-19: A Phase 2/3, Multicenter, Randomized, Open-label, Controlled Trial Run Dong, Li Jiang, Ting Yang, Changsong Wang, Yi Zhang, Xu Chen, et al. (+7)
957 [GO] Antimicrobial Agents and Chemotherapy 2022―Feb―22 Efficacy and Safety of SARS-CoV-2 Neutralizing Antibody JS016 in Hospitalized Chinese Patients with COVID-19: a Phase 2/3, Multicenter, Randomized, Open-Label, Controlled Trial Run Dong, Li Jiang, Ting Yang, Changsong Wang, Yi Zhang, Xu Chen, et al. (+7)
958 [GO] Microbiology Spectrum 2022―Feb―16 Bean Extract-Based Gargle for Efficient Diagnosis of Active COVID-19 Infection Using Rapid Antigen Tests Joseph Kwon, Euna Ko, Se-Young Cho, Young-Ho Lee, Sangmi Jun, Kyuhong Lee, et al. (+22)
959 [GO] Microbiology Spectrum 2022―Feb―16 Lipid and Nucleocapsid N-Protein Accumulation in COVID-19 Patient Lung and Infected Cells Anita E. Grootemaat, Sanne van der Niet, Edwin R. Scholl, Eva Roos, Bernadette Schurink, Marianna Bugiani, et al. (+6)
960 [GO] Microbiology Spectrum 2022―Feb―16 Accuracy of Real-Time Polymerase Chain Reaction in COVID-19 Patients Merlin Jayalal Lawrence Panchali, Hyeon Jeong Oh, You Mi Lee, Choon-Mee Kim, Misbah Tariq, Jun-Won Seo, et al. (+4)
961 [GO] Microbiology Spectrum 2022―Feb―16 Real-Time RT-PCR Allelic Discrimination Assay for Detection of N501Y Mutation in the Spike Protein of SARS-CoV-2 Associated with B.1.1.7 Variant of Concern Mariana Abdulnoor, AliReza Eshaghi, Stephen J. Perusini, George Broukhanski, Antoine Corbeil, Kirby Cronin, et al. (+16)
962 [GO] Microbiology Spectrum 2022―Feb―16 High-Titer Neutralizing Antibodies against the SARS-CoV-2 Delta Variant Induced by Alhydroxyquim-II-Adjuvanted Trimeric Spike Antigens Claudio Counoupas, Paco Pino, Alberto O. Stella, Caroline Ashley, Hannah Lukeman, Nayan D. Bhattacharyya, et al. (+16)
963 [GO] Microbiology Spectrum 2022―Feb―16 Elevated Cytokine Levels in Plasma of Patients with SARS-CoV-2 Do Not Contribute to Pulmonary Microvascular Endothelial Permeability Anita Kovacs-Kasa, Abdelrahman A. Zaied, Silvia Leanhart, Murat Koseoglu, Supriya Sridhar, Rudolf Lucas, et al. (+4)
964 [GO] Microbiology Spectrum 2022―Feb―16 Combined Prospective Seroconversion and PCR Data of Selected Cohorts Indicate a High Rate of Subclinical SARS-CoV-2 Infections-an Open Observational Study in Lower Saxony, Germany Rebecca Jonczyk, Nils Stanislawski, Lisa K. Seiler, Holger Blume, Stefanie Heiden, Henning Lucas, et al. (+11)
965 [GO] Microbiology Spectrum 2022―Feb―16 Genomic Surveillance of SARS-CoV-2 Lineages Indicates Early Circulation of P.1 (Gamma) Variant of Concern in Southern Brazil Priscila Lamb Wink, Rafaela Ramalho, Francielle Liz Monteiro, Fabiana Caroline Zempulski Volpato, Julia Biz Willig, Otávio von Ameln Lovison, et al. (+4)
966 [GO] Microbiology Spectrum 2022―Feb―16 Comparison between Nasal and Nasopharyngeal Swabs for SARS-CoV-2 Rapid Antigen Detection in an Asymptomatic Population, and Direct Confirmation by RT-PCR from the Residual Buffer Glenn Patriquin, Jason J. LeBlanc, Catherine Williams, Todd F. Hatchette, John Ross, Lisa Barrett, et al. (+2)
967 [GO] Microbiology Spectrum 2022―Feb―16 SARS-CoV-2 Virus-Like Particle Neutralizing Capacity in Blood Donors Depends on Serological Profile and Donor-Declared SARS-CoV-2 Vaccination History Steven J. Drews, Queenie Hu, Reuben Samson, Kento T. Abe, Bhavisha Rathod, Karen Colwill, et al. (+4)
968 [GO] mBio 2022―Feb―15 The Human Nose Organoid Respiratory Virus Model: an Ex Vivo Human Challenge Model To Study Respiratory Syncytial Virus (RSV) and Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Pathogenesis and Evaluate Therapeutics Anubama Rajan, Ashley Morgan Weaver, Gina Marie Aloisio, Joseph Jelinski, Hannah L. Johnson, Susan F. Venable, et al. (+16)
969 [GO] mBio 2022―Feb―15 Genome-Wide Characterization of SARS-CoV-2 Cytopathogenic Proteins in the Search of Antiviral Targets Jiantao Zhang, Qi Li, Ruth S. Cruz Cosme, Volodymyr Gerzanich, Qiyi Tang, J. Marc Simard, et al. (+2)
970 [GO] mBio 2022―Feb―15 Inhibition of Protein N- Glycosylation Blocks SARS-CoV-2 Infection Aitor Casas-Sanchez, Alessandra Romero-Ramirez, Eleanor Hargreaves, Cameron C. Ellis, Brian I. Grajeda, Igor L. Estevao, et al. (+6)
971 [GO] mBio 2022―Feb―15 SARS-CoV-2 Variants Increase Kinetic Stability of Open Spike Conformations as an Evolutionary Strategy Ziwei Yang, Yang Han, Shilei Ding, Wei Shi, Tongqing Zhou, Andrés Finzi, et al. (+4)
972 [GO] Microbiology Spectrum 2022―Feb―09 Mycoplasma pneumoniae among Chinese Outpatient Children with Mild Respiratory Tract Infections during the Coronavirus Disease 2019 Pandemic Jiande Chen, Jing Zhang, Zhiwei Lu, Yu Chen, Songsong Huang, Hengtao Li, et al. (+35)
973 [GO] Microbiology Spectrum 2022―Feb―09 TNF-α Levels in Respiratory Samples Are Associated with SARS-CoV-2 Infection Matias J. Pereson, Maria Noel Badano, Natalia Aloisi, Roberto Chuit, M. M. E. de Bracco, Patricia Bare, Daniel R. Perez
974 [GO] Microbiology Spectrum 2022―Feb―09 A Feasible Alternative Strategy Targeting Furin Disrupts SARS-CoV-2 Infection Cycle Tanmoy Mondal, Gururaj Shivange, Alaa Habieb, Jogender Tushir-Singh, Samuel K. Campos
975 [GO] Microbiology Spectrum 2022―Feb―09 Heat Shock Protein Member 8 (HSPA8) Is Involved in Porcine Reproductive and Respiratory Syndrome Virus Attachment and Internalization Lei Wang, Rui Li, Rui Geng, Longxiang Zhang, Xin-xin Chen, Songlin Qiao, et al. (+2)
976 [GO] mBio 2022―Feb―08 Subcellular Detection of SARS-CoV-2 RNA in Human Tissue Reveals Distinct Localization in Alveolar Type 2 Pneumocytes and Alveolar Macrophages Kofi K. Acheampong, Dylan L. Schaff, Benjamin L. Emert, Jonathan Lake, Sam Reffsin, Emily K. Shea, et al. (+10)
977 [GO] mBio 2022―Feb―08 SARS-CoV-2 Variants Associated with Vaccine Breakthrough in the Delaware Valley through Summer 2021 Andrew D. Marques, Scott Sherrill-Mix, John K. Everett, Shantan Reddy, Pascha Hokama, Aoife M. Roche, et al. (+33)
978 [GO] Microbiology Resource Announcements 2022―Feb―03 Coding-Complete Genome Sequences of a Delta Subvariant (AY.33) of SARS-CoV-2 Obtained from Moroccan COVID-19 Patients Mouhssine Hemlali, Taha Chouati, Hamza Ghammaz, Marouane Melloul, Sanaâ Alaoui Amine, Safaa Rhoulam, et al. (+7)
979 [GO] Microbiology Resource Announcements 2022―Feb―03 SARS-CoV-2 Genome Sequence Obtained from Ethiopia Molalegne Bitew, Getnet Hailu, Yakob Gebregziabher Tsegay, Keyru Tuki, Kominist Asmamaw, Kassahun Tesfaye, et al. (+6)
980 [GO] Microbiology Resource Announcements 2022―Feb―03 Identification of the First SARS-CoV-2 Lineage B.1.1.529 Virus Detected in Europe Bert Vanmechelen, Anne-Sophie Logist, Tony Wawina-Bokalanga, Jens Verlinden, Joan Martí-Carreras, Caspar Geenen, et al. (+6)
981 [GO] mSphere 2022―Feb―02 Quantifying Neutralizing Antibodies in Patients with COVID-19 by a Two-Variable Generalized Additive Model Kuan-Ting Liu, Yu-Nong Gong, Chung-Guei Huang, Peng-Nien Huang, Kar-Yee Yu, Hou-Chen Lee, et al. (+20)
982 [GO] Microbiology Spectrum 2022―Feb―02 Evaluation of the Alinity m Resp-4-Plex Assay for the Detection of Severe Acute Respiratory Syndrome Coronavirus 2, Influenza A Virus, Influenza B Virus, and Respiratory Syncytial Virus Wei Zhen, Ryhana Manji, Elizabeth Smith, Jeffrey Wuitschick, Danijela Lucic, Gregory J. Berry, Rebekah M. Martin
983 [GO] Journal of Virology 2022―Feb―02 Coinfection of SARS-CoV-2 and Influenza A virus increased disease severity, impaired neutralizing antibody, and CD4+ T cell responses Eun-Ha Kim, Thi-Quyen Nguyen, Mark Anthony B. Casel, Rare Rollon, Se-mi Kim, Young-Il Kim, et al. (+6)
984 [GO] Journal of Virology 2022―Feb―02 Host cellular RNA helicases regulate SARS-CoV-2 infection Yasuo Ariumi
985 [GO] Clinical Microbiology Reviews 2022―Feb―02 SARS-CoV-2 Infection and Lung Regeneration Fuxiaonan Zhao, Qingwen Ma, Qing Yue, Huaiyong Chen
986 [GO] Journal of Clinical Microbiology 2022―Feb―02 Development of the one-step qualitative RT-PCR assay to detect SARS-CoV-2 Omicron (B.1.1.529) variant in respiratory specimens Tung Phan, Stephanie Boes, Melissa McCullough, Jamie Gribschaw, Jane Marsh, Lee H. Harrison, Alan Wells
987 [GO] Microbiology Spectrum 2022―Feb―02 Sensitivity and Specificity of SARS-CoV-2 Rapid Antigen Detection Tests Using Oral, Anterior Nasal, and Nasopharyngeal Swabs: a Diagnostic Accuracy Study Michael Wölfl-Duchek, Felix Bergmann, Anselm Jorda, Maria Weber, Matthias Müller, Tamara Seitz, et al. (+8)
988 [GO] mBio 2022―Feb―01 Gasdermin D Inhibits Coronavirus Infection by Promoting the Noncanonical Secretion of Beta Interferon Liyuan Zhao, Liang Li, Mei Xue, Xiang Liu, Chengfan Jiang, Wenzhe Wang, et al. (+4)
989 [GO] mBio 2022―Feb―01 The E3 Ubiquitin Ligase RNF5 Facilitates SARS-CoV-2 Membrane Protein-Mediated Virion Release Zhen Yuan, Bing Hu, Hurong Xiao, Xuan Tan, Yan Li, Ke Tang, et al. (+4)
990 [GO] mBio 2022―Feb―01 Co-administration of Favipiravir and the Remdesivir Metabolite GS-441524 Effectively Reduces SARS-CoV-2 Replication in the Lungs of the Syrian Hamster Model Shiho Chiba, Maki Kiso, Noriko Nakajima, Shun Iida, Tadashi Maemura, Makoto Kuroda, et al. (+14)
991 [GO] Microbiology Resource Announcements 2022―Jan―27 Genome Sequencing of Wastewater Confirms the Arrival of the SARS-CoV-2 Omicron Variant at Frankfurt Airport but Limited Spread in the City of Frankfurt, Germany, in November 2021 Shelesh Agrawal, Laura Orschler, Simona Tavazzi, Robert Greither, Bernd Manfred Gawlik, Susanne Lackner, Simon Roux
992 [GO] Microbiology Resource Announcements 2022―Jan―27 Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India Ambica Rangaiah, Sathyanarayan Muthur Shankar, Shashiraja Padukone, Kusuma Gowdra Rangappa, Shantala Gowdara Basawarajappa, Jelle Matthijnssens
993 [GO] Journal of Virology 2022―Jan―26 Stable Cell Clones Harboring Self-Replicating SARS-CoV-2 RNAs for Drug Screen Shufeng Liu, Chao-Kai Chou, Wells W. Wu, Binquan Luan, Tony T. Wang
994 [GO] Journal of Virology 2022―Jan―26 Evaluating antibody mediated protection against Alpha, Beta, and Delta SARS-CoV-2 variants of concern in K18-hACE2 transgenic mice Ting Y. Wong, Alexander M. Horspool, Brynnan P. Russ, Chengjin Ye, Katherine S. Lee, Michael T. Winters, et al. (+15)
995 [GO] Microbiology Spectrum 2022―Jan―26 Limited Variation between SARS-CoV-2-Infected Individuals in Domain Specificity and Relative Potency of the Antibody Response against the Spike Glycoprotein Hanora A. Van Ert, Dana W. Bohan, Kai Rogers, Mohammad Fili, Roberth A. Rojas Chávez, Enya Qing, et al. (+16)
996 [GO] Journal of Virology 2022―Jan―26 Tumor Susceptibility Gene 101 (TSG101) Contributes to Virion Formation of Porcine Reproductive and Respiratory Syndrome Virus via Interaction with the Nucleocapsid (N) Protein along with the Early Secretory Pathway Longxiang Zhang, Rui Li, Rui Geng, Lei Wang, Xin-xin Chen, Songlin Qiao, Gaiping Zhang
997 [GO] mBio 2022―Jan―25 Great Expectations of COVID-19 Herd Immunity Luca T. Giurgea, David M. Morens, Jacob Yount
998 [GO] mBio 2022―Jan―25 N7-Methylation of the Coronavirus RNA Cap Is Required for Maximal Virulence by Preventing Innate Immune Recognition Ruangang Pan, Eveline Kindler, Liu Cao, Yu Zhou, Zhen Zhang, Qianyun Liu, et al. (+10)
999 [GO] mBio 2022―Jan―25 Hamsters Expressing Human Angiotensin-Converting Enzyme 2 Develop Severe Disease following Exposure to SARS-CoV-2 Joseph W. Golden, Rong Li, Curtis R. Cline, Xiankun Zeng, Eric M. Mucker, Amadeo J. Fuentes-Lao, et al. (+16)
1000 [GO] mBio 2022―Jan―25 Longitudinal Study after Sputnik V Vaccination Shows Durable SARS-CoV-2 Neutralizing Antibodies and Reduced Viral Variant Escape to Neutralization over Time María M. Gonzalez Lopez Ledesma, Lautaro Sanchez, Diego S. Ojeda, Santiago Oviedo Rouco, Andrés H. Rossi, Augusto Varese, et al. (+51)
1001 [GO] mBio 2022―Jan―25 Serological Markers of SARS-CoV-2 Reinfection Sameed M. Siddiqui, Kathryn A. Bowman, Alex L. Zhu, Stephanie Fischinger, Samuel Beger, Jenny S. Maron, et al. (+26)
1002 [GO] mSystems 2022―Jan―25 Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure” Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+27)
1003 [GO] Journal of Virology 2022―Jan―19 Identification of amino acids within non-structural proteins 10 and 14 of the avian coronavirus infectious bronchitis virus that result in attenuation in vivo and in ovo . Sarah Keep, Phoebe Stevenson-Leggett, Giulia Dowgier, Holly Everest, Graham Freimanis, Michael Oade, et al. (+7)
1004 [GO] Microbiology Spectrum 2022―Jan―19 Antibody Responses to BNT162b2 Vaccination in Japan: Monitoring Vaccine Efficacy by Measuring IgG Antibodies against the Receptor-Binding Domain of SARS-CoV-2 Hidetsugu Fujigaki, Yasuko Yamamoto, Takenao Koseki, Sumi Banno, Tatsuya Ando, Hiroyasu Ito, et al. (+15)
1005 [GO] Microbiology Spectrum 2022―Jan―19 Performance of Three Tests for SARS-CoV-2 on a University Campus Estimated Jointly with Bayesian Latent Class Modeling T. Alex Perkins, Melissa Stephens, Wendy Alvarez Barrios, Sean Cavany, Liz Rulli, Michael E. Pfrender, Jennifer Dien Bard
1006 [GO] Journal of Clinical Microbiology 2022―Jan―19 Differentiation of SARS-CoV-2 previously infected and vaccinated individuals in an inner-city emergency department Evan J Beck, Yu-Hsiang Hsieh, Reinaldo E Fernandez, Gaby Dashler, Emily R Egbert, Shawn A Truelove, et al. (+14)
1007 [GO] Journal of Virology 2022―Jan―19 The "LLQY" motif on SARS-CoV-2 spike protein affects S incorporation into virus particles Shouwen Du, Wang Xu, Yuhang Wang, Letian Li, Pengfei Hao, Mingyao Tian, et al. (+10)
1008 [GO] Microbiology Spectrum 2022―Jan―19 SARS-CoV-2 Spike Protein Destabilizes Microvascular Homeostasis Soumya Panigrahi, Tamal Goswami, Brian Ferrari, Christopher J. Antonelli, Douglas A. Bazdar, Hannah Gilmore, et al. (+4)
1009 [GO] mBio 2022―Jan―18 Vaccinating Children against COVID-19: Commentary and Mathematical Modeling Michael T. Hawkes, Michael F. Good, Melinda M. Pettigrew
1010 [GO] mBio 2022―Jan―18 JIB-04 Has Broad-Spectrum Antiviral Activity and Inhibits SARS-CoV-2 Replication and Coronavirus Pathogenesis Juhee Son, Shimeng Huang, Qiru Zeng, Traci L. Bricker, James Brett Case, Jinzhu Zhou, et al. (+26)
1011 [GO] mBio 2022―Jan―18 Human Nasal Epithelial Cells Sustain Persistent SARS-CoV-2 Infection In Vitro , despite Eliciting a Prolonged Antiviral Response Akshamal M. Gamage, Kai Sen Tan, Wharton O. Y. Chan, Zhe Zhang Ryan Lew, Jing Liu, Chee Wah Tan, et al. (+11)
1012 [GO] Microbiology Spectrum 2022―Jan―12 Outbreak of NDM-1-Producing Escherichia coli in a Coronavirus Disease 2019 Intensive Care Unit in a Mexican Tertiary Care Center Oscar A. Fernández-García, María F. González-Lara, Marco Villanueva-Reza, Nereyda de-León-Cividanes, Luis F. Xancal-Salvador, Verónica Esteban-Kenel, et al. (+9)
1013 [GO] Journal of Virology 2022―Jan―12 Rapid SARS-CoV-2 Adaptation to Available Cellular Proteases M. Zeeshan Chaudhry, Kathrin Eschke, Markus Hoffmann, Martina Grashoff, Leila Abassi, Yeonsu Kim, et al. (+6)
1014 [GO] Journal of Clinical Microbiology 2022―Jan―12 A pilot study for the evaluation of an interferon-gamma release assay (IGRA) to measure T-cell immune responses after SARS-CoV-2 infection or vaccination in a unique cloistered cohort Pablo Barreiro, Juan Carlos Sanz, Jesús San Román, Marta Pérez-Abeledo, Mar Carretero, Gregoria Megías, et al. (+7)
1015 [GO] Microbiology Spectrum 2022―Jan―12 Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico Celia Boukadida, Blanca Taboada, Marina Escalera-Zamudio, Pavel Isa, José Ernesto Ramírez-González, Joel Armando Vazquez-Perez, et al. (+16)
1016 [GO] Microbiology Spectrum 2022―Jan―12 SARS-CoV-2 N Gene G29195T Point Mutation May Affect Diagnostic Reverse Transcription-PCR Detection Karrie K. K. Ko, Nurdyana Binte Abdul Rahman, Shireen Yan Ling Tan, Kenneth X. L. Chan, Sui Sin Goh, James Heng Chiak Sim, et al. (+7)
1017 [GO] Microbiology Spectrum 2022―Jan―12 A Trans-Governmental Collaboration to Independently Evaluate SARS-CoV-2 Serology Assays Ligia A. Pinto, Ribhi M. Shawar, Brendan O’Leary, Troy J. Kemp, James Cherry, Natalie Thornburg, et al. (+14)
1018 [GO] mBio 2022―Jan―11 Rapid Protection from COVID-19 in Nonhuman Primates Vaccinated Intramuscularly but Not Intranasally with a Single Dose of a Vesicular Stomatitis Virus-Based Vaccine Wakako Furuyama, Kyle Shifflett, Amanda N. Pinski, Amanda J. Griffin, Friederike Feldmann, Atsushi Okumura, et al. (+10)
1019 [GO] mBio 2022―Jan―11 Coronaviruses Nsp5 Antagonizes Porcine Gasdermin D-Mediated Pyroptosis by Cleaving Pore-Forming p30 Fragment Fushan Shi, Qian Lv, Tingjun Wang, Jidong Xu, Wei Xu, Yuhua Shi, et al. (+9)
1020 [GO] mBio 2022―Jan―11 Targeting the Fusion Process of SARS-CoV-2 Infection by Small Molecule Inhibitors Seung Bum Park, Parker Irvin, Zongyi Hu, Mohsin Khan, Xin Hu, Qiru Zeng, et al. (+9)
1021 [GO] mBio 2022―Jan―11 Alpha-Soluble NSF Attachment Protein Prevents the Cleavage of the SARS-CoV-2 Spike Protein by Functioning as an Interferon-Upregulated Furin Inhibitor Jinliang Wang, Jie Luo, Zhiyuan Wen, Xinxin Wang, Lei Shuai, Gongxun Zhong, et al. (+9)
1022 [GO] Journal of Clinical Microbiology 2022―Jan―05 Combination of mycological criteria: a better surrogate to identify COVID-19 associated pulmonary aspergillosis patients and evaluate prognosis? Sarah Dellière, Emmanuel Dudoignon, Sébastian Voicu, Magalie Collet, Sofiane Fodil, Benoit Plaud, et al. (+7)
1023 [GO] Journal of Virology 2022―Jan―05 Activation of the MKK3-p38-MK2-ZFP36 axis by coronavirus infection restricts the upregulation of AU-rich element-containing transcripts in proinflammatory response Shumin Li, Siying Liu, Rui Ai Chen, Mei Huang, To Sing Fung, Ding Xiang Liu
1024 [GO] Applied and Environmental Microbiology 2022―Jan―05 Nanobody-Functionalized Cellulose for Capturing SARS-CoV-2 Xin Sun, Shaobo Yang, Amal A. Al-Dossary, Shana Broitman, Yun Ni, Ming Guan, et al. (+2)
1025 [GO] Applied and Environmental Microbiology 2022―Jan―05 A sensitive and rapid wastewater test for SARS-COV-2 and its use for the early detection of a cluster of cases in a remote community Jade Daigle, Kathleen Racher, Justin Hazenberg, Allan Yeoman, Heather Hannah, Diep Duong, et al. (+11)
1026 [GO] Journal of Clinical Microbiology 2022―Jan―05 Collaboration between clinical and academic laboratories for sequencing SARS-CoV-2 genomes Jeremy Wang, Shawn E. Hawken, Corbin D. Jones, Robert S. Hagan, Frederic Bushman, John Everett, et al. (+2)
1027 [GO] Microbiology Spectrum 2022―Jan―05 Nosocomial Transmission of SARS-CoV-2 Involving Vaccinated Health Care Workers Laura Pérez-Lago, Marina Machado, María de Mar Gómez-Ruiz, Pedro J. Sola-Campoy, Sergio Buenestado-Serrano, Victor Manuel de la Cueva-García, et al. (+10)
1028 [GO] Microbiology Spectrum 2022―Jan―05 SARS-CoV-2 Variant of Concern B.1.1.7: Diagnostic Sensitivity of Three Antigen-Detecting Rapid Tests Andreas K. Lindner, Lisa J. Krüger, Olga Nikolai, Julian A. F. Klein, Heike Rössig, Paul Schnitzler, et al. (+10)
1029 [GO] Microbiology Spectrum 2022―Jan―05 Cyclosporine A Inhibits Viral Infection and Release as Well as Cytokine Production in Lung Cells by Three SARS-CoV-2 Variants Claudio Fenizia, Silvia Galbiati, Claudia Vanetti, Riccardo Vago, Mario Clerici, Carlo Tacchetti, et al. (+2)
1030 [GO] Microbiology Spectrum 2022―Jan―05 Developing an Amplification Refractory Mutation System-Quantitative Reverse Transcription-PCR Assay for Rapid and Sensitive Screening of SARS-CoV-2 Variants of Concern Dongyan Xiong, Xiaoxu Zhang, Mengjuan Shi, Nuo Wang, Ping He, Zhuo Dong, et al. (+6)
1031 [GO] Applied and Environmental Microbiology 2022―Jan―05 A Sensitive and Rapid Wastewater Test for SARS-COV-2 and Its Use for the Early Detection of a Cluster of Cases in a Remote Community Jade Daigle, Kathleen Racher, Justin Hazenberg, Allan Yeoman, Heather Hannah, Diep Duong, et al. (+12)
1032 [GO] Journal of Clinical Microbiology 2022―Jan―05 Combination of Mycological Criteria: a Better Surrogate to Identify COVID-19-Associated Pulmonary Aspergillosis Patients and Evaluate Prognosis? Sarah Dellière, Emmanuel Dudoignon, Sébastian Voicu, Magalie Collet, Sofiane Fodil, Benoit Plaud, et al. (+8)
1033 [GO] Journal of Clinical Microbiology 2022―Jan―05 Collaboration between Clinical and Academic Laboratories for Sequencing SARS-CoV-2 Genomes Jeremy Wang, Shawn E. Hawken, Corbin D. Jones, Robert S. Hagan, Frederic Bushman, John Everett, et al. (+3)
1034 [GO] mBio 2022―Jan―04 Pandemic Influenza Infection Promotes Streptococcus pneumoniae Infiltration, Necrotic Damage, and Proteomic Remodeling in the Heart Maryann P. Platt, Yi-Han Lin, Rosana Wiscovitch-Russo, Yanbao Yu, Norberto Gonzalez-Juarbe, Justin A. Thornton
1035 [GO] Antimicrobial Agents and Chemotherapy 2022―Jan―03 Reply to Casalini et al., “Bacterial Coinfections in COVID-19 Patients without a Positive Microbiologic Result: a Word of Caution” Jonathan Baghdadi, Sarah Bejo, Anthony Harris
1036 [GO] Antimicrobial Agents and Chemotherapy 2022―Jan―03 Bacterial Coinfections in COVID-19 Patients without a Positive Microbiologic Result: a Word of Caution Giacomo Casalini, Giacomo Pozza, Andrea Giacomelli, Spinello Antinori
1037 [GO] Microbiology Spectrum 2021―Dec―22 Identification of HLA-A*24:02-Restricted CTL Candidate Epitopes Derived from the Nonstructural Polyprotein 1a of SARS-CoV-2 and Analysis of Their Conservation Using the Mutation Database of SARS-CoV-2 Variants Akira Takagi, Masanori Matsui, Yongjun Sui
1038 [GO] Journal of Virology 2021―Dec―22 SARS-CoV-2 and Influenza A virus Co-infections in Ferrets Ying Huang, Amanda L. Skarlupka, Hyesun Jang, Uriel Blas-Machado, Nathan Holladay, R. Jeffrey Hogan, Ted M. Ross
1039 [GO] Journal of Clinical Microbiology 2021―Dec―22 Assessment of the analytical sensitivity of ten lateral flow devices against the SARS-CoV-2 omicron variant Joshua Deerain, Julian Druce, Thomas Tran, Mitchell Batty, Yano Yoga, Michael Fennell, et al. (+3)
1040 [GO] Journal of Virology 2021―Dec―22 Microglia do not restrict SARS-CoV-2 replication following infection of the central nervous system of K18-hACE2 transgenic mice Gema M. Olivarria, Yuting Cheng, Susana Furman, Collin Pachow, Lindsay A. Hohsfield, Charlene Smith-Geater, et al. (+12)
1041 [GO] Journal of Virology 2021―Dec―22 A hybrid soluble gp130/spike-nanobody fusion protein simultaneously blocks IL-6 trans-signaling and cellular infection with SARS-CoV2 Julia Ettich, Julia Werner, Hendrik T. Weitz, Eva Mueller, Roland Schwarzer, Philipp A. Lang, et al. (+2)
1042 [GO] Journal of Virology 2021―Dec―22 A Hybrid Soluble gp130/Spike-Nanobody Fusion Protein Simultaneously Blocks Interleukin-6 trans -Signaling and Cellular Infection with SARS-CoV-2 Julia Ettich, Julia Werner, Hendrik T. Weitz, Eva Mueller, Roland Schwarzer, Philipp A. Lang, et al. (+3)
1043 [GO] Journal of Virology 2021―Dec―22 SARS-CoV-2 and Influenza A Virus Coinfections in Ferrets Ying Huang, Amanda L. Skarlupka, Hyesun Jang, Uriel Blas-Machado, Nathan Holladay, R. Jeffrey Hogan, et al. (+2)
1044 [GO] mBio 2021―Dec―21 Drug Combinations as a First Line of Defense against Coronaviruses and Other Emerging Viruses Judith M. White, Joshua T. Schiffer, Rachel A. Bender Ignacio, Shuang Xu, Denis Kainov, Aleksandr Ianevski, et al. (+5)
1045 [GO] Journal of Clinical Microbiology 2021―Dec―16 Quantitative SARS-CoV-2 viral-load curves in paired saliva and nasal swabs inform appropriate respiratory sampling site and analytical test sensitivity required for earliest viral detection Emily S. Savela, Alexander Winnett, Anna E. Romano, Michael K. Porter, Natasha Shelby, Reid Akana, et al. (+10)
1046 [GO] Journal of Clinical Microbiology 2021―Dec―16 Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection Emily S. Savela, Alexander Viloria Winnett, Anna E. Romano, Michael K. Porter, Natasha Shelby, Reid Akana, et al. (+11)
1047 [GO] Microbiology Spectrum 2021―Dec―15 Testing Denmark: a Danish Nationwide Surveillance Study of COVID-19 Kamille Fogh, Jarl E. Strange, Bibi F. S. S. Scharff, Alexandra R. R. Eriksen, Rasmus B. Hasselbalch, Henning Bundgaard, et al. (+29)
1048 [GO] Journal of Virology 2021―Dec―15 A Single Vaccine Protects against SARS-CoV-2 and Influenza Virus in Mice Kangli Cao, Xiang Wang, Haoran Peng, Longfei Ding, Xiangwei Wang, Yangyang Hu, et al. (+12)
1049 [GO] Microbiology Spectrum 2021―Dec―15 Serological Detection of SARS-CoV-2 IgG Using Commercially Available Enzyme Immunoassays on Dried Blood Spots Collected from Patients Gregory J. Walker, Rebecca Davis, Zin Naing, Brad McEntee, Yonghui Lu, Tatijana Denadija, et al. (+2)
1050 [GO] Journal of Virology 2021―Dec―15 Comparison of experimental MERS-CoV infection acquired by three individual routes of infection in the common marmoset Michelle Nelson, Lyn M. O’Brien, Carwyn Davies, Emma Keyser, Wendy Butcher, Sophie J Smither, et al. (+3)
1051 [GO] Journal of Virology 2021―Dec―15 Identification of a Novel Neutralizing Epitope on the N-Terminal Domain of the Human Coronavirus 229E Spike Protein Jiale Shi, Yuejun Shi, Ruixue Xiu, Gang Wang, Rui Liang, Yuzhou Jiao, et al. (+4)
1052 [GO] Journal of Virology 2021―Dec―15 Comparison of Experimental Middle East Respiratory Syndrome Coronavirus Infection Acquired by Three Individual Routes of Infection in the Common Marmoset Michelle Nelson, Lyn M. O’Brien, Carwyn Davies, Emma Keyser, Wendy Butcher, Sophie J. Smither, et al. (+4)
1053 [GO] Journal of Virology 2021―Dec―15 A Single Vaccine Protects against SARS-CoV-2 and Influenza Virus in Mice Kangli Cao, Xiang Wang, Haoran Peng, Longfei Ding, Xiangwei Wang, Yangyang Hu, et al. (+13)
1054 [GO] Antimicrobial Agents and Chemotherapy 2021―Dec―13 Early Use of Sarilumab in Patients Hospitalised with COVID-19 Pneumonia and Features of Systemic Inflammation. Nicolás Merchante, Sheila Cárcel, José Carlos Garrido-Gracia, Marta Trigo-Rodríguez, María Ángeles Esteban Moreno, Rafael León-López, et al. (+14)
1055 [GO] Antimicrobial Agents and Chemotherapy 2021―Dec―13 Early Use of Sarilumab in Patients Hospitalized with COVID-19 Pneumonia and Features of Systemic Inflammation: the SARICOR Randomized Clinical Trial Nicolás Merchante, Sheila Cárcel, José Carlos Garrido-Gracia, Marta Trigo-Rodríguez, María Ángeles Esteban Moreno, Rafael León-López, et al. (+14)
1056 [GO] Microbiology Resource Announcements 2021―Dec―09 SARS-CoV-2 Genome Sequences, Including One with an ORF7a Deletion, Obtained from Patients in Bangladesh Mizanur Rahman, Rummana Rahim, Abu Hasan, Naoko Kawai, Lavel Chinyama Moonga, Tatsuki Sugi, et al. (+3)
1057 [GO] Microbiology Spectrum 2021―Dec―08 COVID-19 Antibody Detection and Assay Performance Using Red Cell Agglutination Kshitij Srivastava, Kamille A. West, Valeria De Giorgi, Michael R. Holbrook, Nicolai V. Bovin, Stephen M. Henry, et al. (+2)
1058 [GO] Microbiology Spectrum 2021―Dec―08 A Cold Chain-Independent Specimen Collection and Transport Medium Improves Diagnostic Sensitivity and Minimizes Biosafety Challenges of COVID-19 Molecular Diagnosis Vikram Saini, Priya Kalra, Manish Sharma, Chhavi Rai, Vikas Saini, Kamini Gautam, et al. (+5)
1059 [GO] Microbiology Spectrum 2021―Dec―08 Amino Acid Metabolism is Significantly Altered at the Time of Admission in Hospital for Severe COVID-19 Patients: Findings from Longitudinal Targeted Metabolomics Analysis Laura Ansone, Monta Briviba, Ivars Silamikelis, Anna Terentjeva, Ingus Perkons, Liga Birzniece, et al. (+7)
1060 [GO] Journal of Virology 2021―Dec―08 Analysis of B cell receptor repertoires reveals key signatures of systemic B cell response after SARS-CoV-2 infection Yudi Zhang, Qihong Yan, Kun Luo, Ping He, Ruitian Hou, Xinwei Zhao, et al. (+15)
1061 [GO] Microbiology Spectrum 2021―Dec―08 Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein James J. Davis, S. Wesley Long, Paul A. Christensen, Randall J. Olsen, Robert Olson, Maulik Shukla, et al. (+4)
1062 [GO] Journal of Virology 2021―Dec―08 Analysis of B Cell Receptor Repertoires Reveals Key Signatures of the Systemic B Cell Response after SARS-CoV-2 Infection Yudi Zhang, Qihong Yan, Kun Luo, Ping He, Ruitian Hou, Xinwei Zhao, et al. (+16)
1063 [GO] mBio 2021―Dec―07 Previous Infection Combined with Vaccination Produces Neutralizing Antibodies with Potency against SARS-CoV-2 Variants F. Javier Ibarrondo, Christian Hofmann, Ayub Ali, Paul Ayoub, Donald B. Kohn, Otto O. Yang, et al. (+2)
1064 [GO] Microbiology Resource Announcements 2021―Dec―02 Genome Sequencing of the SARS-CoV-2 Delta (B.1.617.2) Variant of Concern Detected in Bangladesh Tanjina Akhtar Banu, M. Murshed Hasan Sarkar, Shahina Akter, Barna Goswami, Iffat Jahan, Eshrar Osman, et al. (+10)
1065 [GO] Microbiology Resource Announcements 2021―Dec―02 Coding-Complete Genome Sequences of Alpha and Delta SARS-CoV-2 Variants from Kamphaeng Phet Province, Thailand, from May to July 2021 Kanyarat Phutthasophit, Darunee Buddhari, Piyawan Chinnawirotpisan, Khajohn Joonlasak, Wudtichai Manasatienkij, Angkana Huang, et al. (+9)
1066 [GO] Microbiology Spectrum 2021―Dec―01 Implementation and Accuracy of BinaxNOW Rapid Antigen COVID-19 Test in Asymptomatic and Symptomatic Populations in a High-Volume Self-Referred Testing Site Zishan K. Siddiqui, Mihir Chaudhary, Matthew L. Robinson, Anna B. McCall, Ria Peralta, Rogette Esteve, et al. (+8)
1067 [GO] mSphere 2021―Dec―01 Metabolites with SARS-CoV-2 Inhibitory Activity Identified from Human Microbiome Commensals Frank J. Piscotta, Hans-Heinrich Hoffmann, Young Joo Choi, Gabriel I. Small, Alison W. Ashbrook, Bimal Koirala, et al. (+5)
1068 [GO] Journal of Clinical Microbiology 2021―Dec―01 A Dual-Antigen SARS-CoV-2 Serological Assay Reflects Antibody Avidity Yu Nakagama, Yuko Nitahara, Natsuko Kaku, Evariste Tshibangu-Kabamba, Yasutoshi Kido
1069 [GO] Microbiology Spectrum 2021―Dec―01 Age-Dependent Reduction in Neutralization against Alpha and Beta Variants of BNT162b2 SARS-CoV-2 Vaccine-Induced Immunity Hitoshi Kawasuji, Yoshitomo Morinaga, Hideki Tani, Yumiko Saga, Makito Kaneda, Yushi Murai, et al. (+9)
1070 [GO] Journal of Virology 2021―Dec―01 Development of a Single-cycle Infectious SARS-CoV-2 Virus Replicon Particle System for use in BSL2 Laboratories Johnny Malicoat, Senthamizharasi Manivasagam, Sonia Zuñiga, Isabel Sola, Dianne McCabe, Lijun Rong, et al. (+3)
1071 [GO] Journal of Virology 2021―Dec―01 Development of a Single-Cycle Infectious SARS-CoV-2 Virus Replicon Particle System for Use in Biosafety Level 2 Laboratories Johnny Malicoat, Senthamizharasi Manivasagam, Sonia Zuñiga, Isabel Sola, Dianne McCabe, Lijun Rong, et al. (+4)
1072 [GO] Journal of Clinical Microbiology 2021―Dec―01 A Dual-Antigen SARS-CoV-2 Serological Assay Reflects Antibody Avidity Yu Nakagama, Yuko Nitahara, Natsuko Kaku, Evariste Tshibangu-Kabamba, Yasutoshi Kido, Alexander J. McAdam
1073 [GO] Microbiology Spectrum 2021―Nov―24 Plasma gp96 is a Novel Predictive Biomarker for Severe COVID-19 Rongguo Wei, Biyan Zhou, Shaohua Li, Debin Zhong, Boan Li, Jianqiu Qin, et al. (+8)
1074 [GO] Microbiology Spectrum 2021―Nov―24 Comparison of the Performance of the PanBio COVID-19 Antigen Test in SARS-CoV-2 B.1.1.7 (Alpha) Variants versus non-B.1.1.7 Variants M. L. van Ogtrop, T. J. W. van de Laar, D. Eggink, J. W. Vanhommerig, W. A. van der Reijden, S. Wesley Long
1075 [GO] Microbiology Spectrum 2021―Nov―24 SARS-CoV-2 Infection of Rhesus Macaques Treated Early with Human COVID-19 Convalescent Plasma Jesse D. Deere, Timothy D. Carroll, Joseph Dutra, Linda Fritts, Rebecca Lee Sammak, JoAnn L. Yee, et al. (+22)
1076 [GO] Journal of Virology 2021―Nov―24 Highly Neutralizing COVID-19 Convalescent Plasmas Potently Block SARS-CoV-2 Replication and Pneumonia in Syrian Hamsters Yuki Takamatsu, Masaki Imai, Kenji Maeda, Noriko Nakajima, Nobuyo Higashi-Kuwata, Kiyoko Iwatsuki-Horimoto, et al. (+8)
1077 [GO] Journal of Virology 2021―Nov―24 Are COVID-19 Vaccine Boosters Needed? The Science behind Boosters Rachel M. Burckhardt, John J. Dennehy, Leo L. M. Poon, Linda J. Saif, Lynn W. Enquist
1078 [GO] Journal of Virology 2021―Nov―24 The N-terminal Region of Middle East Respiratory Syndrome Coronavirus Accessory Protein 8b is Essential for Enhanced Virulence of an Attenuated Murine Coronavirus Yuming Li, Yingkang Jin, Lijun Kuang, Zhenhua Luo, Fang Li, Jing Sun, et al. (+9)
1079 [GO] Microbiology Spectrum 2021―Nov―24 Usefulness of ELISA Using Total Antibody against Plant-Expressed Recombinant Nucleocapsid Protein of SARS-CoV-2 Misbah Tariq, Jian Hur, Jun-Won Seo, Da Young Kim, Na Ra Yun, You Mi Lee, et al. (+13)
1080 [GO] Journal of Virology 2021―Nov―24 Age-related susceptibility of ferrets to SARS-CoV-2 infection Mathias Martins, Maureen H.V. Fernandes, Lok R. Joshi, Diego G. Diel
1081 [GO] Microbiology Resource Announcements 2021―Nov―24 Whole-Genome Sequences of SARS-CoV-2 Isolates from the Dominican Republic R. Paulino-Ramirez, E. Riego, A. Vallejo-Degaudenzi, V. V. Calderon, L. Tapia, Patricia León, et al. (+6)
1082 [GO] mSphere 2021―Nov―24 High SARS-CoV-2 Seroprevalence in Rural Peru, 2021: a Cross-Sectional Population-Based Study Andres Moreira-Soto, Johanna Maribel Pachamora Diaz, Lilian González-Auza, Xiomara Jeanleny Merino Merino, Alvaro Schwalb, Christian Drosten, et al. (+7)
1083 [GO] Journal of Virology 2021―Nov―24 Glycosylation and disulfide bonding of wild-type SARS-CoV-2 spike glycoprotein Shijian Zhang, Eden P. Go, Haitao Ding, Saumya Anang, John C. Kappes, Heather Desaire, Joseph G. Sodroski
1084 [GO] Microbiology Spectrum 2021―Nov―24 Evaluation of Humoral Immune Response after SARS-CoV-2 Vaccination Using Two Binding Antibody Assays and a Neutralizing Antibody Assay Minjeong Nam, Jong Do Seo, Hee-Won Moon, Hanah Kim, Mina Hur, Yeo-Min Yun, Smita S. Iyer
1085 [GO] Microbiology Resource Announcements 2021―Nov―24 Coding-Complete Genome Sequence of a SARS-CoV-2 Variant Obtained from Raw Sewage at the University of Tennessee-Knoxville Campus K. T. Ash, I. Alamilla, Y. Li, D. C. Joyner, D. E. Williams, P. J. McKay, et al. (+7)
1086 [GO] Journal of Virology 2021―Nov―24 Are COVID-19 Vaccine Boosters Needed? The Science behind Boosters Rachel M. Burckhardt, John J. Dennehy, Leo L. M. Poon, Linda J. Saif, Lynn W. Enquist, Rozanne M. Sandri-Goldin
1087 [GO] Journal of Virology 2021―Nov―24 Age-Related Susceptibility of Ferrets to SARS-CoV-2 Infection Mathias Martins, Maureen H. V. Fernandes, Lok R. Joshi, Diego G. Diel, Tom Gallagher
1088 [GO] Journal of Virology 2021―Nov―24 Analysis of Glycosylation and Disulfide Bonding of Wild-Type SARS-CoV-2 Spike Glycoprotein Shijian Zhang, Eden P. Go, Haitao Ding, Saumya Anang, John C. Kappes, Heather Desaire, et al. (+2)
1089 [GO] Journal of Virology 2021―Nov―24 Highly Neutralizing COVID-19 Convalescent Plasmas Potently Block SARS-CoV-2 Replication and Pneumonia in Syrian Hamsters Yuki Takamatsu, Masaki Imai, Kenji Maeda, Noriko Nakajima, Nobuyo Higashi-Kuwata, Kiyoko Iwatsuki-Horimoto, et al. (+9)
1090 [GO] mBio 2021―Nov―23 Golden Syrian Hamsters as a Model for Revisiting the Role of Biological Sex Differences in SARS-CoV-2 Infection Rafael Tomoya Michita, Indira U. Mysorekar
1091 [GO] mSystems 2021―Nov―23 A Genetic Trap in Yeast for Inhibitors of SARS-CoV-2 Main Protease Hanna Alalam, Sunniva Sigurdardóttir, Catarina Bourgard, Ievgeniia Tiukova, Ross D. King, Morten Grøtli, et al. (+2)
1092 [GO] Antimicrobial Agents and Chemotherapy 2021―Nov―22 A photoactivable natural product with broad antiviral activity against enveloped viruses including highly pathogenic coronaviruses Thomas Meunier, Lowiese Desmarets, Simon Bordage, Moussa Bamba, Kévin Hervouet, Yves Rouillé, et al. (+10)
1093 [GO] Microbiology Spectrum 2021―Nov―17 Single-Point Mutations in the N Gene of SARS-CoV-2 Adversely Impact Detection by a Commercial Dual Target Diagnostic Assay Sharon Miller, Terence Lee, Adam Merritt, Todd Pryce, Avram Levy, David Speers, Yun Young Go
1094 [GO] Microbiology Spectrum 2021―Nov―17 Postvaccination SARS-COV-2 among Health Care Workers in New Jersey: A Genomic Epidemiological Study Barun Mathema, Liang Chen, Kar Fai Chow, Yanan Zhao, Michael C. Zody, Jose R. Mediavilla, et al. (+18)
1095 [GO] Microbiology Spectrum 2021―Nov―17 SARS-CoV-2 B.1.1.7 Decline Is Not Driven by the Introduction of a More Successful Variant Cristina Rodríguez-Grande, Sergio Buenestado-Serrano, Luis Alcalá, Pedro J. Sola-Campoy, Andrea Molero-Salinas, Álvaro Otero-Sobrino, et al. (+10)
1096 [GO] Microbiology Spectrum 2021―Nov―17 Prolonged SARS-CoV-2 Positivity in Immunocompetent Patients: Virus Isolation, Genomic Integrity, and Transmission Risk Isabela de Carvalho Leitão, Pedro Telles Calil, Rafael Mello Galliez, Filipe Romero Rebello Moreira, Diana Mariani, Anna Carla Pinto Castiñeiras, et al. (+17)
1097 [GO] Microbiology Spectrum 2021―Nov―17 A Highly Sensitive and Specific SARS-CoV-2 Spike- and Nucleoprotein-Based Fluorescent Multiplex Immunoassay (FMIA) to Measure IgG, IgA, and IgM Class Antibodies Anna Solastie, Camilla Virta, Anu Haveri, Nina Ekström, Anu Kantele, Simo Miettinen, et al. (+7)
1098 [GO] Microbiology Spectrum 2021―Nov―17 SARS-CoV-2 Variants and Their Relevant Mutational Profiles: Update Summer 2021 Mohammad Alkhatib, Valentina Svicher, Romina Salpini, Francesca Alessandra Ambrosio, Maria Concetta Bellocchi, Luca Carioti, et al. (+8)
1099 [GO] Microbiology Spectrum 2021―Nov―17 A Novel Strategy for the Detection of SARS-CoV-2 Variants Based on Multiplex PCR-Mass Spectrometry Minisequencing Technology Fei Zhao, Jinxing Lu, Bing Lu, Tian Qin, Xuemei Wang, Xuexin Hou, et al. (+10)
1100 [GO] Microbiology Spectrum 2021―Nov―17 CRISPR-Cas12a-Based Detection for the Major SARS-CoV-2 Variants of Concern Yuanhao Liang, Hongqing Lin, Lirong Zou, Jianhui Zhao, Baisheng Li, Haiying Wang, et al. (+6)
1101 [GO] Microbiology Spectrum 2021―Nov―17 Evaluating Humoral Immunity against SARS-CoV-2: Validation of a Plaque-Reduction Neutralization Test and a Multilaboratory Comparison of Conventional and Surrogate Neutralization Assays Emelissa J. Valcourt, Kathy Manguiat, Alyssia Robinson, Yi-Chan Lin, Kento T. Abe, Samira Mubareka, et al. (+25)
1102 [GO] Journal of Virology 2021―Nov―17 The Antimalaria Drug Artesunate Inhibits Porcine Reproductive and Respiratory Syndrome Virus Replication via Activating AMPK and Nrf2/HO-1 Signaling Pathways Feixiang Long, Mingxin Zhang, Xia Yang, Xiaohuan Liang, Lizhan Su, Tongqing An, et al. (+5)
1103 [GO] mBio 2021―Nov―16 A Previously Undiscovered Circular RNA, circTNFAIP3, and Its Role in Coronavirus Replication Liuyang Du, Xingbo Wang, Junli Liu, Jiarong Li, Shengnan Wang, Jing Lei, et al. (+3)
1104 [GO] mBio 2021―Nov―16 Evolutionary and Phenotypic Characterization of Two Spike Mutations in European Lineage 20E of SARS-CoV-2 Paula Ruiz-Rodriguez, Clara Francés-Gómez, Álvaro Chiner-Oms, Mariana G. López, Santiago Jiménez-Serrano, Irving Cancino-Muñoz, et al. (+15)
1105 [GO] mBio 2021―Nov―16 A Bacterial Cell-Based Assay To Study SARS-CoV-2 Protein-Protein Interactions Benjamin L. Springstein, Padraig Deighan, Grzegorz J. Grabe, Ann Hochschild, Jeff F. Miller
1106 [GO] mBio 2021―Nov―16 Cross-Neutralization of Emerging SARS-CoV-2 Variants of Concern by Antibodies Targeting Distinct Epitopes on Spike Siriruk Changrob, Yanbin Fu, Jenna J. Guthmiller, Peter J. Halfmann, Lei Li, Christopher T. Stamper, et al. (+15)
1107 [GO] Microbiology Spectrum 2021―Nov―10 High-Resolution Linear Epitope Mapping of the Receptor Binding Domain of SARS-CoV-2 Spike Protein in COVID-19 mRNA Vaccine Recipients Yuko Nitahara, Yu Nakagama, Natsuko Kaku, Katherine Candray, Yu Michimuko, Evariste Tshibangu-Kabamba, et al. (+7)
1108 [GO] Microbiology Spectrum 2021―Nov―10 Diagnosis and Treatment of Bacterial Pneumonia in Critically Ill Patients with COVID-19 Using a Multiplex PCR Assay: A Large Italian Hospital’s Five-Month Experience Brunella Posteraro, Venere Cortazzo, Flora Marzia Liotti, Giulia Menchinelli, Chiara Ippoliti, Giulia De Angelis, et al. (+8)
1109 [GO] Microbiology Spectrum 2021―Nov―10 Spike Antibody Titers Evaluation after a 2-Dose Regimen of BNT162b2 Vaccination in Healthcare Workers Previously Infected with SARS-CoV-2 Satoshi Kayukawa, Kengo Nanya, Makoto Morita, Kenji Ina, Yoshihiro Ota, Shinji Hasegawa, Yongjun Sui
1110 [GO] Microbiology Spectrum 2021―Nov―10 Sequencing Using a Two-Step Strategy Reveals High Genetic Diversity in the S Gene of SARS-CoV-2 after a High-Transmission Period in Tunis, Tunisia Wasfi Fares, Kais Ghedira, Mariem Gdoura, Anissa Chouikha, Sondes Haddad-Boubaker, Marwa Khedhiri, et al. (+10)
1111 [GO] Microbiology Spectrum 2021―Nov―10 Early Adoption of Longitudinal Surveillance for SARS-CoV-2 among Staff in Long-Term Care Facilities: Prevalence, Virologic and Sequence Analysis Emily N. Gallichotte, Kendra M. Quicke, Nicole R. Sexton, Emily Fitzmeyer, Michael C. Young, Ashley J. Janich, et al. (+7)
1112 [GO] Microbiology Spectrum 2021―Nov―10 Evaluation of Sample Pooling for SARS-CoV-2 Detection in Nasopharyngeal Swab and Saliva Samples with the Idylla SARS-CoV-2 Test Paul Hofman, Maryline Allegra, Myriam Salah, Jonathan Benzaquen, Virginie Tanga, Olivier Bordone, et al. (+15)
1113 [GO] Journal of Virology 2021―Nov―10 A structurally conserved RNA element within SARS-CoV-2 ORF1a RNA and S mRNA regulates translation in response to viral S protein-induced signaling in human lung cells. Abhijit Basu, Srinivasa Penumutchu, Kien Nguyen, Uri Mbonye, Blanton S. Tolbert, Jonathan Karn, et al. (+2)
1114 [GO] Microbiology Spectrum 2021―Nov―10 Differences in IgG Antibody Responses following BNT162b2 and mRNA-1273 SARS-CoV-2 Vaccines José G. Montoya, Amy E. Adams, Valérie Bonetti, Sien Deng, Nan A. Link, Suzanne Pertsch, et al. (+5)
1115 [GO] Journal of Clinical Microbiology 2021―Nov―10 External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories Fanny Wegner, Tim Roloff, Michael Huber, Samuel Cordey, Alban Ramette, Yannick Gerth, et al. (+46)
1116 [GO] Journal of Virology 2021―Nov―10 MicroRNA-376b-3p Promotes Porcine Reproductive and Respiratory Syndrome Virus Replication by Targeting Viral Restriction Factor TRIM22 Jing Chen, Shijie Zhao, Zhiying Cui, Wen Li, Pengli Xu, Huimin Liu, et al. (+6)
1117 [GO] mBio 2021―Nov―09 CCR2 Signaling Restricts SARS-CoV-2 Infection Abigail Vanderheiden, Jeronay Thomas, Allison L. Soung, Meredith E. Davis-Gardner, Katharine Floyd, Fengzhi Jin, et al. (+10)
1118 [GO] Journal of Virology 2021―Nov―03 Genomic Surveillance Tracks the First Community Outbreak of the SARS-CoV-2 Delta (B.1.617.2) Variant in Brazil Alessandra P. Lamarca, Luiz G. P. de Almeida, Ronaldo da Silva Francisco Junior, Liliane Cavalcante, Douglas Terra Machado, Otávio Brustolini, et al. (+18)
1119 [GO] Journal of Clinical Microbiology 2021―Nov―03 Clinical and Infection Prevention Applications of SARS-CoV-2 Genotyping: an IDSA/ASM Consensus Review Document Alexander L. Greninger, Jennifer Dien Bard, Robert C. Colgrove, Erin H. Graf, Kimberly E. Hanson, Mary K. Hayden, et al. (+7)
1120 [GO] Microbiology Spectrum 2021―Nov―03 Diagnostic Performance of Self-Collected Saliva Versus Nasopharyngeal Swab for the Molecular Detection of SARS-CoV-2 in the Clinical Setting Mohammad Khaja Mafij Uddin, Tahmina Shirin, Mohammad Enayet Hossain, Ahmed Nawsher Alam, Jenifar Quaiyum Ami, Rashedul Hasan, et al. (+7)
1121 [GO] Microbiology Spectrum 2021―Nov―03 Nasopharyngeal Expression of Angiotensin-Converting Enzyme 2 and Transmembrane Serine Protease 2 in Children within SARS-CoV-2-Infected Family Clusters Mohammad Rubayet Hasan, Muneera Naseer Ahmad, Soha Roger Dargham, Hatem Zayed, Alaa Al Hashemi, Nonhlanhla Ngwabi, et al. (+5)
1122 [GO] mSystems 2021―Nov―02 Identification and Development of Therapeutics for COVID-19 Halie M. Rando, Nils Wellhausen, Soumita Ghosh, Alexandra J. Lee, Anna Ada Dattoli, Fengling Hu, et al. (+18)
1123 [GO] mBio 2021―Nov―02 Interferon-Lambda Intranasal Protection and Differential Sex Pathology in a Murine Model of SARS-CoV-2 Infection Sook-Young Sohn, Janet Hearing, JoAnn Mugavero, Varvara Kirillov, Elena Gorbunova, Luke Helminiak, et al. (+6)
1124 [GO] mSystems 2021―Nov―02 Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs Rodolfo A. Salido, Victor J. Cantú, Alex E. Clark, Sandra L. Leibel, Anahid Foroughishafiei, Anushka Saha, et al. (+38)
1125 [GO] mBio 2021―Nov―02 Erratum for Zeng et al., “Neutralization of SARS-CoV-2 Variants of Concern Harboring Q677H” Cong Zeng, John P. Evans, Julia N. Faraone, Panke Qu, Yi-Min Zheng, Linda Saif, et al. (+4)
1126 [GO] Molecular and Cellular Biology 2021―Nov―01 The Activin/FLRG pathway associates with poor COVID-19 outcomes in hospitalized patients Megan McAleavy, Qian Zhang, Peter J. Ehmann, Jianing Xu, Matthew F. Wipperman, Dharani Ajithdoss, et al. (+11)
1127 [GO] Journal of Microbiology and Biology Education 2021―Oct―29 Teaching during the COVID-19 Pandemic: Sharing Results and Data Obtained from the Ames Test Valentina Blanco, Marcos Davyt, Javier García-Alonso, Claudia Piccini, Pablo Zunino, Eliana Rodríguez
1128 [GO] Microbiology Spectrum 2021―Oct―27 Mapping SARS-CoV-2 Antibody Epitopes in COVID-19 Patients with a Multi-Coronavirus Protein Microarray David Camerini, Arlo Z. Randall, Krista Trappl-Kimmons, Amit Oberai, Christopher Hung, Joshua Edgar, et al. (+18)
1129 [GO] Microbiology Spectrum 2021―Oct―27 Viral Kinetics of Severe Acute Respiratory Syndrome Coronavirus 2 in Patients with Coronavirus Disease 2019 Da Young Kim, Eun Kyung Bae, Jun-Won Seo, Na Ra Yun, Choon-Mee Kim, Dong-Min Kim, Rosemary C. She
1130 [GO] Journal of Virology 2021―Oct―27 Distinct Roles of Type I and Type III Interferons During a Native Murine β Coronavirus Lung Infection Lokesh Sharma, Xiaohua Peng, Hua Qing, Brandon K. Hilliard, Jooyoung Kim, Anush Swaminathan, et al. (+18)
1131 [GO] Journal of Virology 2021―Oct―27 Reply to Grigoriev et al., “Sequences of SARS-CoV-2 “Hybrids” with the Human Genome: Signs 1 of Non-coding RNA?” Bingyu Yan, Srishti Chakravorty, Carmen Mirabelli, Luopin Wang, Jorge L. Trujillo-Ochoa, Daniel Chauss, et al. (+6)
1132 [GO] Journal of Virology 2021―Oct―27 Sequences of SARS-CoV-2 “Hybrids” with the Human Genome: Signs of Non-coding RNA? Andrey Grigoriev, James J. Kelley, Lingyu Guan
1133 [GO] Journal of Clinical Microbiology 2021―Oct―27 Performance characteristics of the Abbott BinaxNOW SARS-CoV-2 antigen test in comparison to real-time RT-PCR and viral culture in community testing sites during November 2020 Olivia Almendares, Jessica L. Prince-Guerra, Leisha D. Nolen, Jayleen K.L. Gunn, Ariella P. Dale, Sean A. Buono, et al. (+32)
1134 [GO] Microbiology Spectrum 2021―Oct―27 An Assessment of Serological Assays for SARS-CoV-2 as Surrogates for Authentic Virus Neutralization Nicholas Wohlgemuth, Kendall Whitt, Sean Cherry, Ericka Kirkpatrick Roubidoux, Chun-Yang Lin, Kim J. Allison, et al. (+16)
1135 [GO] Journal of Virology 2021―Oct―27 Protective Efficacy of Gastrointestinal SARS-CoV-2 Delivery Against Intranasal and Intratracheal SARS-CoV-2 Challenge in Rhesus Macaques Jingyou Yu, Natalie D. Collins, Noe B. Mercado, Katherine McMahan, Abishek Chandrashekar, Jinyan Liu, et al. (+25)
1136 [GO] Microbiology Spectrum 2021―Oct―27 The Emergence of Sars-CoV-2 Variant Lambda (C.37) in South America Pedro E. Romero, Alejandra Dávila-Barclay, Guillermo Salvatierra, Luis González, Diego Cuicapuza, Luis Solís, et al. (+5)
1137 [GO] mBio 2021―Oct―26 Identification of ZDHHC17 as a Potential Drug Target for Swine Acute Diarrhea Syndrome Coronavirus Infection Yun Luo, Chee Wah Tan, Shi-Zhe Xie, Ying Chen, Yu-Lin Yao, Kai Zhao, et al. (+7)
1138 [GO] mBio 2021―Oct―26 Temporal-Geographical Dispersion of SARS-CoV-2 Spike Glycoprotein Variant Lineages and Their Functional Prediction Using in Silico Approach Siaw Shi Boon, Chichao Xia, Maggie Haitian Wang, Ka Lai Yip, Ho Yin Luk, Sile Li, et al. (+6)
1139 [GO] mSystems 2021―Oct―26 Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+28)
1140 [GO] mSystems 2021―Oct―26 Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+28)
1141 [GO] Microbiology Spectrum 2021―Oct―25 Robust Evaluation of Ultraviolet-C Sensitivity for SARS-CoV-2 and Surrogate Coronaviruses S. J. Boegel, M. Gabriel, M. Sasges, B. Petri, M. R. D’Agostino, A. Zhang, et al. (+5)
1142 [GO] Microbiology Spectrum 2021―Oct―25 Diagnostic Efficacy and Tolerability of Molded Plastic Nasopharyngeal Swab (FinSwab) Compared to Flocked Nylon Swab in Detection of SARS-CoV-2 and Other Respiratory Viruses Miia Laine, Jaakko Ahti, Ville Peltola, Piritta Peri, Antti J. Hakanen, Matti Waris, Heba H. Mostafa
1143 [GO] Microbiology Spectrum 2021―Oct―25 SARS-CoV-2 Antibody Binding and Neutralization in Dried Blood Spot Eluates and Paired Plasma Hannah L. Itell, Haidyn Weight, Carolyn S. Fish, Jennifer K. Logue, Nicholas Franko, Caitlin R. Wolf, et al. (+6)
1144 [GO] Microbiology Spectrum 2021―Oct―25 Generation of False-Positive SARS-CoV-2 Antigen Results with Testing Conditions outside Manufacturer Recommendations: A Scientific Approach to Pandemic Misinformation Glenn Patriquin, Ross J. Davidson, Todd F. Hatchette, Breanne M. Head, Edgard Mejia, Michael G. Becker, et al. (+8)
1145 [GO] Microbiology Spectrum 2021―Oct―25 Respiratory Pathogen Coinfections in SARS-CoV-2-Positive Patients in Southeastern Wisconsin: A Retrospective Analysis Samantha J. Scott, Beth Pfotenhauer, Joshua J. Weiner, Jordan Hilleshiem, Manjeet Khubbar, Sanjib Bhattacharyya, S. Wesley Long
1146 [GO] Microbiology Resource Announcements 2021―Oct―21 Complete Genome Sequence of Bovine Coronavirus in Blood Diarrhea from Adult Cattle That Died from Winter Dysentery in Japan Keisuke Nakagawa, Hitomi Kumano, Yuko Kitamura, Keisuke Kuwata, Eiji Tanaka, Hideto Fukushi, Jelle Matthijnssens
1147 [GO] Microbiology Resource Announcements 2021―Oct―21 Genome Sequences of SARS-CoV-2 Sublineage B.1.617.2 Strains from 12 Children in Chattogram, Bangladesh Adnan Mannan, H. M. Hamidullah Mehedi, M. Abdur Rob, Sanjoy Kanti Biswas, Nahid Sultana, Rajdeep Biswas, et al. (+14)
1148 [GO] Journal of Virology 2021―Oct―20 Key substitutions in the spike protein of SARS-CoV-2 variants can predict resistance to monoclonal antibodies, but other substitutions can modify the effects Sabrina Lusvarghi, Wei Wang, Rachel Herrup, Sabari Nath Neerukonda, Russell Vassell, Lisa Bentley, et al. (+3)
1149 [GO] Journal of Virology 2021―Oct―20 SARS-CoV-2 causes lung infection without severe disease in human ACE2 knock-in mice Emma S. Winkler, Rita E. Chen, Fahmida Alam, Soner Yildiz, James Brett Case, Melissa B. Uccellini, et al. (+4)
1150 [GO] Microbiology Spectrum 2021―Oct―20 COVID-19-Associated Pulmonary Aspergillosis, Fungemia, and Pneumocystosis in the Intensive Care Unit: a Retrospective Multicenter Observational Cohort during the First French Pandemic Wave Stéphane Bretagne, Karine Sitbon, Françoise Botterel, Sarah Dellière, Valérie Letscher-Bru, Taieb Chouaki, et al. (+30)
1151 [GO] Microbiology Spectrum 2021―Oct―20 Multisite Clinical Validation of Isothermal Amplification-Based SARS-CoV-2 Detection Assays Using Different Sampling Strategies Kanan T. Desai, Karla Alfaro, Laura Mendoza, Matthew Faron, Brian Mesich, Mauricio Maza, et al. (+16)
1152 [GO] Microbiology Spectrum 2021―Oct―20 Risk Factors for Being Seronegative following SARS-CoV-2 Infection in a Large Cohort of Health Care Workers in Denmark Caroline Klint Johannesen, Omid Rezahosseini, Mikkel Gybel-Brask, Jonas Henrik Kristensen, Rasmus Bo Hasselbalch, Mia Marie Pries-Heje, et al. (+26)
1153 [GO] mSystems 2021―Oct―19 Assessing Multiplex Tiling PCR Sequencing Approaches for Detecting Genomic Variants of SARS-CoV-2 in Municipal Wastewater Xuan Lin, Melissa Glier, Kevin Kuchinski, Tenysha Ross-Van Mierlo, David McVea, John R. Tyson, et al. (+3)
1154 [GO] mBio 2021―Oct―19 Infectious SARS-CoV-2 Is Emitted in Aerosol Particles Seth A. Hawks, Aaron J. Prussin, Sarah C. Kuchinsky, Jin Pan, Linsey C. Marr, Nisha K. Duggal, John A. Lednicky
1155 [GO] mBio 2021―Oct―19 Rapid Proliferation of Pandemic Research: Implications for Dual-Use Risks Sriharshita Musunuri, Jonas B. Sandbrink, Joshua Teperowski Monrad, Megan J. Palmer, Gregory D. Koblentz, Paul Keim
1156 [GO] Microbiology Spectrum 2021―Oct―13 Oral Microbiome Alterations and SARS-CoV-2 Saliva Viral Load in Patients with COVID-19 Emily Happy Miller, Medini K. Annavajhala, Alexander M. Chong, Heekuk Park, Yael R. Nobel, Ali Soroush, et al. (+9)
1157 [GO] Journal of Clinical Microbiology 2021―Oct―13 Aspergillus Lateral Flow Assay with Digital Reader for the Diagnosis of COVID-19 Associated Pulmonary Aspergillosis (CAPA): A multicenter study Brice Autier, Juergen Prattes, P. Lewis White, Maricela Valerio, Marina Machado, Jessica Price, et al. (+3)
1158 [GO] mSphere 2021―Oct―13 Early Prediction of Severe COVID-19 in Patients by a Novel Immune-Related Predictive Model Caiyu Sun, Mingshan Xue, Min Yang, Lihui Zhu, Yunxue Zhao, Xiaoting Lv, et al. (+9)
1159 [GO] Microbiology Spectrum 2021―Oct―13 Shared Mutations in Emerging SARS-CoV-2 Circulating Variants May Lead to Reverse Transcription-PCR (RT-PCR)-Based Misidentification of B.1.351 and P.1 Variants of Concern Carmen Losada, Carla Rico-Luna, Álvaro Otero-Sobrino, Andrea Molero-Salinas, Sergio Buenestado-Serrano, Ana Candela, et al. (+5)
1160 [GO] Microbiology Spectrum 2021―Oct―13 Comparative Performance of a New SARS-CoV-2 Rapid Detection System Gianni Gori Savellini, Gabriele Anichini, Chiara Terrosi, Shibily Prathyumnan, Claudia Gandolfo, Stefano Marini, et al. (+2)
1161 [GO] Microbiology Spectrum 2021―Oct―13 Structural Basis of a Human Neutralizing Antibody Specific to the SARS-CoV-2 Spike Protein Receptor-Binding Domain Mei Yang, Jiaqi Li, Zhaoxia Huang, Heng Li, Yueming Wang, Xiaoli Wang, et al. (+22)
1162 [GO] Microbiology Spectrum 2021―Oct―13 Routine, Cost-Effective SARS-CoV-2 Surveillance Testing Using Pooled Saliva Limits Viral Spread on a Residential College Campus Nicole A. Vander Schaaf, Anthony J. Fund, Brianna V. Munnich, Alexi L. Zastrow, Erin E. Fund, Tanner L. Senti, et al. (+7)
1163 [GO] mBio 2021―Oct―12 A Vimentin-Targeting Oral Compound with Host-Directed Antiviral and Anti-Inflammatory Actions Addresses Multiple Features of COVID-19 and Related Diseases Zhizhen Li, Jianping Wu, Ji Zhou, Baoshi Yuan, Jiqiao Chen, Wanchen Wu, et al. (+14)
1164 [GO] mBio 2021―Oct―12 A Low-Producing Haplotype of Interleukin-6 Disrupting CTCF Binding Is Protective against Severe COVID-19 Tao Chen, Yu-Xin Lin, Yan Zha, Ying Sun, Jinxiu Tian, Zhiying Yang, et al. (+19)
1165 [GO] mBio 2021―Oct―12 Two-Component Nanoparticle Vaccine Displaying Glycosylated Spike S1 Domain Induces Neutralizing Antibody Response against SARS-CoV-2 Variants Linda van Oosten, Jort J. Altenburg, Cyrielle Fougeroux, Corinne Geertsema, Fred van den End, Wendy A. C. Evers, et al. (+24)
1166 [GO] Antimicrobial Agents and Chemotherapy 2021―Oct―11 MOXIDECTIN AND IVERMECTIN INHIBIT SARS-COV-2 REPLICATION IN VERO E6 CELLS BUT NOT IN HUMAN PRIMARY AIRWAY EPITHELIUM CELLS Nilima Dinesh Kumar, Bram M. ter Ellen, Ellen M. Bouma, Berit Troost, Denise P. I. van de Pol, Heidi H. van der Ende-Metselaar, et al. (+8)
1167 [GO] Microbiology Spectrum 2021―Oct―07 A Serological Snapshot of COVID-19 Initial Stages in Israel by a 6-Plex Antigen Array Morly Fisher, Haim Levy, Ella Fatelevich, Yafa Afrimov, Amir Ben-Shmuel, Ronit Rosenfeld, et al. (+12)
1168 [GO] Microbiology Spectrum 2021―Oct―07 Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of COVID-19 Patients Konstantina Kitsou, Anastasia Kotanidou, Dimitrios Paraskevis, Timokratis Karamitros, Aris Katzourakis, Richard Tedder, et al. (+9)
1169 [GO] Microbiology Spectrum 2021―Oct―07 PABPC4 Broadly Inhibits Coronavirus Replication by Degrading Nucleocapsid Protein through Selective Autophagy Yajuan Jiao, Ning Kong, Hua Wang, Dage Sun, Sujie Dong, Xiaoyong Chen, et al. (+13)
1170 [GO] Microbiology Resource Announcements 2021―Oct―07 Genome Sequences of Community SARS-CoV-2 B.1.526 and P.1 Variants Circulating in the Dominican Republic Robert Paulino-Ramirez, Victor Virgilio Calderon, Alejandro Vallejo Degaudenzi, Simon Roux
1171 [GO] Microbiology Spectrum 2021―Oct―07 Validation of Commercial SARS-CoV-2 Immunoassays in a Nigerian Population Fehintola Ige, Yohhei Hamada, Laura Steinhardt, Nnaemeka C. Iriemenam, Mabel Uwandu, Stacie Marta Greby, et al. (+6)
1172 [GO] Microbiology Spectrum 2021―Oct―07 Averting an Outbreak of SARS-CoV-2 in a University Residence Hall through Wastewater Surveillance Ryland Corchis-Scott, Qiudi Geng, Rajesh Seth, Rajan Ray, Mohsan Beg, Nihar Biswas, et al. (+17)
1173 [GO] Microbiology Spectrum 2021―Oct―07 Rapid and High-Throughput Reverse Transcriptase Quantitative PCR (RT-qPCR) Assay for Identification and Differentiation between SARS-CoV-2 Variants B.1.1.7 and B.1.351 Oran Erster, Ella Mendelson, Virginia Levy, Areej Kabat, Batya Mannasse, Hadar Asraf, et al. (+11)
1174 [GO] Journal of Clinical Microbiology 2021―Oct―06 Comparing Five SARS-CoV-2 Antibody Assay Results Before and After the First and Second ChAdOx1 nCoV-19 Vaccination Among Health Care Workers: A Prospective Multicenter Study Seri Jeong, Nuri Lee, Su Kyung Lee, Eun-Jung Cho, Jungwon Hyun, Min-Jeong Park, et al. (+6)
1175 [GO] Journal of Virology 2021―Oct―06 Highly efficient SARS-CoV-2 infection of human cardiomyocytes: spike protein-mediated cell fusion and its inhibition Chanakha K. Navaratnarajah, David R. Pease, Peter Halfmann, Biruhalem Taye, Alison Barkhymer, Kyle G. Howell, et al. (+5)
1176 [GO] Applied and Environmental Microbiology 2021―Oct―06 Application of Copper Iodide Nanoparticle-doped Film and Fabric to Inactivate SARS-CoV-2 via the Virucidal Activity of Cuprous Ion (Cu + ) Yohei Takeda, Dulamjav Jamsransuren, Tomokazu Nagao, Yoko Fukui, Sachiko Matsuda, Haruko Ogawa
1177 [GO] mBio 2021―Oct―05 A Combination of Receptor-Binding Domain and N-Terminal Domain Neutralizing Antibodies Limits the Generation of SARS-CoV-2 Spike Neutralization-Escape Mutants Denise Haslwanter, M. Eugenia Dieterle, Anna Z. Wec, Cecilia M. O’Brien, Mrunal Sakharkar, Catalina Florez, et al. (+25)
1178 [GO] mBio 2021―Oct―05 Neutralization of SARS-CoV-2 Variants of Concern Harboring Q677H Cong Zeng, John P. Evans, Julia N. Faraone, Panke Qu, Yi-Min Zheng, Linda Saif, et al. (+5)
1179 [GO] Microbiology Spectrum 2021―Sep―30 Kinetics of SARS-CoV-2 Specific and Neutralizing Antibodies over Seven Months after Symptom Onset in COVID-19 Patients Liguo Zhu, Xin Xu, Baoli Zhu, Xiling Guo, Ke Xu, Ci Song, et al. (+13)
1180 [GO] Journal of Virology 2021―Sep―29 Genetic and Antigenic Characterization of an Influenza A(H3N2) Outbreak in Cambodia and the Greater Mekong Subregion during the COVID-19 Pandemic, 2020 Jurre Y. Siegers, Vijaykrishna Dhanasekaran, Ruopeng Xie, Yi-Mo Deng, Sarika Patel, Vanra Ieng, et al. (+14)
1181 [GO] Journal of Virology 2021―Sep―29 Structure-based discovery and structural basis of a novel broad-spectrum natural product against main protease of coronavirus Yuting Zhang, Hongxia Gao, Xiaohui Hu, Qisheng Wang, Fanglin Zhong, Xuelan Zhou, et al. (+26)
1182 [GO] Microbiology Spectrum 2021―Sep―29 Rapid and Quantitative Detection of Human Antibodies against the 2019 Novel Coronavirus SARS CoV2 and Its Variants as a Result of Vaccination and Infection Benjamin Taubner, Ruben Peredo-Wende, Ananthakrishnan Ramani, Gurpreet Singh, Klemen Strle, Nathaniel C. Cady, Tulip Jhaveri
1183 [GO] Microbiology Spectrum 2021―Sep―29 Serological Assays for Assessing Postvaccination SARS-CoV-2 Antibody Response Sally A. Mahmoud, Subhashini Ganesan, Shivaraj Naik, Safaa Bissar, Isra Al Zamel, KN Warren, et al. (+3)
1184 [GO] Microbiology Spectrum 2021―Sep―29 SARS-CoV-2 Antibody Testing in Health Care Workers: A Comparison of the Clinical Performance of Three Commercially Available Antibody Assays Niamh Allen, Melissa Brady, Antonio Isidro Carrion Martin, Lisa Domegan, Cathal Walsh, Elaine Houlihan, et al. (+22)
1185 [GO] Journal of Clinical Microbiology 2021―Sep―29 Performance evaluation of the BD SARS-CoV-2 reagents for the BD MAX™ system Karen Yanson, William Laviers, Lori Neely, Elizabeth Lockamy, Luis Carlos Castillo-Hernandez, Christopher Oldfied, et al. (+8)
1186 [GO] Journal of Clinical Microbiology 2021―Sep―29 SARS-CoV-2 supply shortages and TB diagnostics: Current issues requiring immediate solutions Derek T. Armstrong, Erin A. Tacheny, Gene Olinger, Ryan Howard, M. Megan Lemmon, Debanjana Dasgupta, et al. (+2)
1187 [GO] mBio 2021―Sep―28 Mechanism of Microbial Metabolite Leupeptin in the Treatment of COVID-19 by Traditional Chinese Medicine Herbs Lifeng Fu, Shuai Shao, Yong Feng, Fei Ye, Xue Sun, Qingling Wang, et al. (+10)
1188 [GO] mBio 2021―Sep―28 Antibody-Dependent Enhancement of SARS-CoV-2 Infection Is Mediated by the IgG Receptors FcγRIIA and FcγRIIIA but Does Not Contribute to Aberrant Cytokine Production by Macrophages Tadashi Maemura, Makoto Kuroda, Tammy Armbrust, Seiya Yamayoshi, Peter J. Halfmann, Yoshihiro Kawaoka, Stacey Schultz-Cherry
1189 [GO] mBio 2021―Sep―28 Betacoronavirus Assembly: Clues and Perspectives for Elucidating SARS-CoV-2 Particle Formation and Egress David Bracquemond, Delphine Muriaux, Francois-Loic Cosset, Vinayaka R. Prasad
1190 [GO] mBio 2021―Sep―28 Microbial Ecology and Evolution Are Essential for Understanding Pandemics Megan E. Frederickson, Aspen T. Reese
1191 [GO] Microbiology Resource Announcements 2021―Sep―23 Whole-Genome Sequences of SARS-CoV-2 Isolates from Ethiopian Patients Dawit Hailu Alemayehu, Bethlehem Adnew, Fekadu Alemu, Dessalegn Abeje Tefera, Tamrayehu Seyoum, Getachew Tesfaye Beyene, et al. (+8)
1192 [GO] Microbiology Spectrum 2021―Sep―22 Serological Testing Reveals the Hidden COVID-19 Burden among Health Care Workers Experiencing a SARS-CoV-2 Nosocomial Outbreak Yu Nakagama, Yuko Komase, Katherine Candray, Sachie Nakagama, Fumiaki Sano, Tomoya Tsuchida, et al. (+7)
1193 [GO] Journal of Virology 2021―Sep―22 Discovery and evaluation of entry inhibitors for SARS-CoV-2 and its emerging variants Arpan Acharya, Kabita Pandey, Michellie Thurman, Elizabeth Klug, Jay Trivedi, Kalicharan Sharma, et al. (+3)
1194 [GO] Microbiology Spectrum 2021―Sep―22 Comparison of Dried Blood Spots and Venous Blood for the Detection of SARS-CoV-2 Antibodies in a Population of Nursing Home Residents Eline Meyers, Stefan Heytens, Asangwing Formukong, Hanne Vercruysse, An De Sutter, Tom Geens, et al. (+7)
1195 [GO] Microbiology Spectrum 2021―Sep―22 SARS-CoV-2 Antibody Rapid Tests: Valuable Epidemiological Tools in Challenging Settings Francesca Saluzzo, Paola Mantegani, Valeria Poletti De Chaurand, Virginia Quaresima, Federica Cugnata, Clelia Di Serio, et al. (+5)
1196 [GO] Journal of Clinical Microbiology 2021―Sep―22 Finding the middle ground with the clinical laboratory’s role in SARS-CoV-2 genomic surveillance Erin H. Graf
1197 [GO] Journal of Virology 2021―Sep―22 Direct activation of endothelial cells by SARS-CoV-2 nucleocapsid protein is blocked by Simvastatin Yisong Qian, Tianhua Lei, Parth S. Patel, Chi H Lee, Paula Monaghan-Nichols, Hong-Bo Xin, et al. (+2)
1198 [GO] Journal of Virology 2021―Sep―22 Inhibition of autophagy suppresses SARS-CoV-2 replication and ameliorates pneumonia in hACE2 transgenic mice and xenografted human lung tissues Chao Shang, Xinyu Zhuang, He Zhang, Yiquan Li, Yilong Zhu, Jing Lu, et al. (+7)
1199 [GO] Applied and Environmental Microbiology 2021―Sep―22 RNA viromics of Southern California wastewater and detection of SARS-CoV-2 single nucleotide variants. Jason A. Rothman, Theresa B. Loveless, Joseph Kapcia, Eric D. Adams, Joshua A. Steele, Amity G. Zimmer-Faust, et al. (+7)
1200 [GO] Journal of Virology 2021―Sep―22 Serum Neutralizing Activity of mRNA-1273 Against SARS-CoV-2 Variants Angela Choi, Matthew Koch, Kai Wu, Groves Dixon, Judy Oestreicher, Holly Legault, et al. (+6)
1201 [GO] Journal of Clinical Microbiology 2021―Sep―22 Whole Genome Sequencing of SARS-CoV-2: Assessment of the Ion Torrent AmpliSeq Panel and Comparison with the Illumina-MiSeq ARTIC Protocol Jonathan Plitnick, Sara Griesemer, Erica Lasek-Nesselquist, Navjot Singh, Daryl Lamson, Kirsten St. George
1202 [GO] mBio 2021―Sep―21 SARS-CoV-2 Nsp5 Demonstrates Two Distinct Mechanisms Targeting RIG-I and MAVS To Evade the Innate Immune Response Yongzhen Liu, Chao Qin, Youliang Rao, Chau Ngo, Joshua J. Feng, Jun Zhao, et al. (+14)
1203 [GO] mBio 2021―Sep―21 Safety and Immunogenicity of a Newcastle Disease Virus Vector-Based SARS-CoV-2 Vaccine Candidate, AVX/COVID-12-HEXAPRO (Patria), in Pigs Jesús Horacio Lara-Puente, Juan Manuel Carreño, Weina Sun, Alejandro Suárez-Martínez, Luis Ramírez-Martínez, Francisco Quezada-Monroy, et al. (+14)
1204 [GO] Antimicrobial Agents and Chemotherapy 2021―Sep―20 The natural stilbenoid (-)-hopeaphenol inhibits cellular entry of SARS-CoV-2 USA-WA1/2020, B.1.1.7 and B.1.351 variants Ian Tietjen, Joel Cassel, Emery T. Register, Xiang Yang Zhou, Troy E. Messick, Frederick Keeney, et al. (+8)
1205 [GO] Microbiology Resource Announcements 2021―Sep―16 Draft Genome Sequence of a Multidrug-Resistant Escherichia coli Sequence Type 1193 Pandemic Clone Isolated from Wastewater in Austria Adriana Cabal, Nadine Peischl, Gerhard Rab, Anna Stöger, Burkhard Springer, Jasmin Sucher, et al. (+3)
1206 [GO] Journal of Clinical Microbiology 2021―Sep―15 Evaluation of the BinaxNOW COVID-19 rapid antigen test in an asymptomatic patient population undergoing pre-procedural screening Nadarra L. Stokes, Katelyn A. Reed, Elie F. Berbari, Sara Vetter, Matthew J. Binnicker
1207 [GO] Journal of Virology 2021―Sep―15 Protective efficacy of rhesus adenovirus COVID-19 vaccines against mouse-adapted SARS-CoV-2 Lisa H. Tostanoski, Lisa E. Gralinski, David R. Martinez, Alexandra Schaefer, Shant H. Mahrokhian, Zhenfeng Li, et al. (+11)
1208 [GO] Microbiology Spectrum 2021―Sep―15 Saliva SARS-CoV-2 Antibody Prevalence in Children Maya W. Keuning, Marloes Grobben, Anne-Elise C. de Groen, Eveline P. Berman-de Jong, Merijn W. Bijlsma, Sophie Cohen, et al. (+18)
1209 [GO] Microbiology Spectrum 2021―Sep―15 A Multiplex Noninvasive Salivary Antibody Assay for SARS-CoV-2 Infection and Its Application in a Population-Based Survey by Mail Andrey I. Egorov, Shannon M. Griffin, Miyu Fuzawa, Jason Kobylanski, Rachel Grindstaff, William Padgett, et al. (+8)
1210 [GO] Microbiology Spectrum 2021―Sep―15 Lower Incidence of Parvovirus-B19 Infections in Dutch Blood Donors during SARS-CoV-2 Pandemic M. W. Molenaar-de Backer, B. M. Hogema, M. H. Koppelman, T. J. van de Laar, E. Slot, H. L. Zaaijer, Rosemary C. She
1211 [GO] Journal of Virology 2021―Sep―15 The NF-κB transcriptional footprint is essential for SARS-CoV-2 replication Benjamin E. Nilsson-Payant, Skyler Uhl, Adrien Grimont, Ashley S. Doane, Phillip Cohen, Roosheel S. Patel, et al. (+12)
1212 [GO] Journal of Clinical Microbiology 2021―Sep―15 Development of a nanobody-based competitive ELISA for efficiently and specifically detecting antibodies against genotype 2 porcine reproductive and respiratory syndrome viruses Hong Duan, Xu Chen, Jiakai Zhao, Jiahong Zhu, Guixi Zhang, Mengnan Fan, et al. (+6)
1213 [GO] mSystems 2021―Sep―14 High-Frequency, High-Throughput Quantification of SARS-CoV-2 RNA in Wastewater Settled Solids at Eight Publicly Owned Treatment Works in Northern California Shows Strong Association with COVID-19 Incidence Marlene K. Wolfe, Aaron Topol, Alisha Knudson, Adrian Simpson, Bradley White, Duc J. Vugia, et al. (+8)
1214 [GO] mBio 2021―Sep―14 MOV10 Helicase Interacts with Coronavirus Nucleocapsid Protein and Has Antiviral Activity Li Wang, Isabel Sola, Luis Enjuanes, Sonia Zuñiga, Adam P. Geballe, Samuel I. Miller
1215 [GO] mBio 2021―Sep―14 Neutralizing Monoclonal Antibodies That Target the Spike Receptor Binding Domain Confer Fc Receptor-Independent Protection against SARS-CoV-2 Infection in Syrian Hamsters Wen Su, Sin Fun Sia, Aaron J. Schmitz, Traci L. Bricker, Tyler N. Starr, Allison J. Greaney, et al. (+16)
1216 [GO] Journal of Clinical Microbiology 2021―Sep―08 Aspergillus test profiles and mortality in critically-ill COVID-19 patients Mehmet Ergün, Roger J.M. Brüggemann, Alexandre Alanio, Sarah Dellière, Andreas van Arkel, Robbert G. Bentvelsen, et al. (+15)
1217 [GO] Microbiology Spectrum 2021―Sep―08 The Reemergence of Seasonal Respiratory Viruses in Houston, Texas, after Relaxing COVID-19 Restrictions Parsa Hodjat, Paul A. Christensen, Sishir Subedi, David W. Bernard, Randall J. Olsen, S. Wesley Long, Heba H. Mostafa
1218 [GO] Applied and Environmental Microbiology 2021―Sep―08 UV Inactivation of SARS-CoV-2 across the UVC spectrum: KrCl* excimer, mercury-vapor, and LED sources Ben Ma, Patricia M. Gundy, Charles P. Gerba, Mark D. Sobsey, Karl G. Linden
1219 [GO] Microbiology Spectrum 2021―Sep―08 Evaluation of a SARS-CoV-2 Capture IgM Antibody Assay in Convalescent Sera Binh Ha, Samadhan Jadhao, Laila Hussaini, Theda Gibson, Kathy Stephens, Luis Salazar, et al. (+9)
1220 [GO] mSphere 2021―Sep―08 Erratum for Markmann et al., “Sex Disparities and Neutralizing-Antibody Durability to SARS-CoV-2 Infection in Convalescent Individuals” Alena J. Markmann, Natasa Giallourou, D. Ryan Bhowmik, Yixuan J. Hou, Aaron Lerner, David R. Martinez, et al. (+18)
1221 [GO] Microbiology Spectrum 2021―Sep―08 Analysis of the Role of N-Linked Glycosylation in Cell Surface Expression, Function, and Binding Properties of SARS-CoV-2 Receptor ACE2 Raymond Rowland, Alberto Brandariz-Nuñez, Ujjwal Neogi
1222 [GO] mSphere 2021―Sep―08 Complete Analysis of the Epidemiological Scenario around a SARS-CoV-2 Reinfection: Previous Infection Events and Subsequent Transmission Laura Pérez Lago, Leire Pérez Latorre, Marta Herranz, Francisco Tejerina, Pedro J. Sola-Campoy, Jon Sicilia, et al. (+12)
1223 [GO] Journal of Virology 2021―Sep―08 Cytoplasmic tail truncation of SARS-CoV-2 Spike protein enhances titer of pseudotyped vectors but masks the effect of the D614G mutation Hsu-Yu Chen, Chun Huang, Lu Tian, Xiaoli Huang, Chennan Zhang, George N. Llewellyn, et al. (+5)
1224 [GO] Journal of Clinical Microbiology 2021―Sep―08 Emergence of SARS-CoV-2 variant B.1.575.2 containing the E484K mutation in the spike protein in Pamplona (Spain) May-June 2021 Camino Trobajo-Sanmartín, Ana Miqueleiz, María Eugenia Portillo, Miguel Fernández-Huerta, Ana Navascués, Pilar Sola Sara, et al. (+4)
1225 [GO] Journal of Virology 2021―Sep―08 A bifluorescent-based assay for the identification of neutralizing antibodies against SARS-CoV-2 variants of concern in vitro and in vivo Kevin Chiem, Desarey Morales Vasquez, Jesus A. Silvas, Jun-Gyu Park, Michael S. Piepenbrink, Julien Sourimant, et al. (+9)
1226 [GO] mBio 2021―Sep―07 Immunological Profiling of COVID-19 Patients with Pulmonary Sequelae Jianghua Wu, Lu Tang, Yanling Ma, Yu Li, Dongmei Zhang, Qian Li, et al. (+4)
1227 [GO] Antimicrobial Agents and Chemotherapy 2021―Sep―07 Antibiotic Use and Bacterial Infection Among Inpatients in the First Wave of COVID-19: A Retrospective Cohort Study of 64,691 Patients Jonathan D. Baghdadi, KC Coffey, Timileyin Adediran, Katherine E. Goodman, Lisa Pineles, Larry S. Magder, et al. (+5)
1228 [GO] mBio 2021―Sep―07 Differential Effects of Prostaglandin D 2 Signaling on Macrophages and Microglia in Murine Coronavirus Encephalomyelitis Abhishek Kumar Verma, Jian Zheng, Matthias Mack, Florent Ginhoux, Stanley Perlman, Diane E. Griffin
1229 [GO] Antimicrobial Agents and Chemotherapy 2021―Sep―07 Safety, tolerability, pharmacokinetics and immunogenicity of a monoclonal antibody (SCTA01) targeting SARS-CoV-2 in healthy adults: A randomized, double-blind, placebo-controlled, phase I study Yinjuan Li, Lu Qi, Haihong Bai, Chunyun Sun, Shuping Xu, Yu Wang, et al. (+14)
1230 [GO] Microbiology Resource Announcements 2021―Sep―02 Coding-Complete Sequence of a SARS-CoV-2 B.1.1.25 Lineage Obtained from an 8-Day-Old Deceased Neonate Muntasir Alam, M. Ishrat Jahan, Shafina Jahan, Dianna M. Blau, Afruna Rahman, Mohammed Ziaur Rahman, et al. (+5)
1231 [GO] Microbiology Spectrum 2021―Sep―01 Distinct Metabolic Profile Associated with a Fatal Outcome in COVID-19 Patients during the Early Epidemic in Italy Elisa Saccon, Alessandra Bandera, Mariarita Sciumè, Flora Mikaeloff, Abid A. Lashari, Stefano Aliberti, et al. (+18)
1232 [GO] Journal of Clinical Microbiology 2021―Sep―01 Routine antigen testing is not a substitute for healthcare worker vaccination against SARS-CoV-2 Mary Elizabeth Sexton, Colleen S. Kraft
1233 [GO] Microbiology Spectrum 2021―Sep―01 Targeted Hybridization Capture of SARS-CoV-2 and Metagenomics Enables Genetic Variant Discovery and Nasal Microbiome Insights Dorottya Nagy-Szakal, Mara Couto-Rodriguez, Heather L. Wells, Joseph E. Barrows, Marilyne Debieu, Kristin Butcher, et al. (+9)
1234 [GO] Journal of Clinical Microbiology 2021―Sep―01 A hemagglutination-based, semi-quantitative test for point-of-care determination of SARS-CoV-2 antibody levels Robert L. Kruse, Yuting Huang, Alyssa Lee, Xianming Zhu, Ruchee Shrestha, Oliver Laeyendecker, et al. (+5)
1235 [GO] Microbiology Spectrum 2021―Sep―01 Mild SARS-CoV-2 Illness Is Not Associated with Reinfections and Provides Persistent Spike, Nucleocapsid, and Virus-Neutralizing Antibodies Charles F. Schuler, Carmen Gherasim, Kelly O’Shea, David M. Manthei, Jesse Chen, Cristyn Zettel, et al. (+8)
1236 [GO] mBio 2021―Aug―31 Evolution, Mode of Transmission, and Mutational Landscape of Newly Emerging SARS-CoV-2 Variants Chiranjib Chakraborty, Ashish Ranjan Sharma, Manojit Bhattacharya, Govindasamy Agoramoorthy, Sang-Soo Lee, Stephen P. Goff
1237 [GO] Journal of Virology 2021―Aug―25 A novel potentially recombinant rodent coronavirus with a polybasic cleavage site in the spike protein Xin Li, Liang Wang, Peipei Liu, Hongying Li, Shuting Huo, Kexin Zong, et al. (+10)
1238 [GO] mSphere 2021―Aug―25 Emergence of Multiple SARS-CoV-2 Antibody Escape Variants in an Immunocompromised Host Undergoing Convalescent Plasma Treatment Liang Chen, Michael C. Zody, Clara Di Germanio, Rachel Martinelli, Jose R. Mediavilla, Marcus H. Cunningham, et al. (+18)
1239 [GO] mSphere 2021―Aug―25 Sex Disparities and Neutralizing-Antibody Durability to SARS-CoV-2 Infection in Convalescent Individuals Alena J. Markmann, Natasa Giallourou, D. Ryan Bhowmik, Yixuan J. Hou, Aaron Lerner, David R. Martinez, et al. (+19)
1240 [GO] Microbiology Spectrum 2021―Aug―25 Detection of SARS-CoV-2 Infection in Gargle, Spit, and Sputum Specimens Eero Poukka, Henna Mäkelä, Lotta Hagberg, Thuan Vo, Hanna Nohynek, Niina Ikonen, et al. (+5)
1241 [GO] Microbiology Spectrum 2021―Aug―25 Comparison of SARS-CoV-2 PCR-Based Detection Using Saliva or Nasopharyngeal Swab Specimens in Asymptomatic Populations Guang Fan, Xuan Qin, Daniel N. Streblow, Cristina Magallanes Hoyos, Donna E. Hansel, William Lainhart
1242 [GO] Journal of Clinical Microbiology 2021―Aug―25 Single-amplicon, multiplex real-time RT-PCR with tiled probes to detect SARS-CoV-2 spike mutations associated with variants of concern Ahmed Babiker, Katherine Immergluck, Samuel D. Stampfer, Anuradha Rao, Leda Bassit, Max Su, et al. (+13)
1243 [GO] Microbiology Spectrum 2021―Aug―25 Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing Susan Realegeno, Sara Hash, Charlene Wong, Roland Liu, Jovan Shepherd, Robert T. Schooley, et al. (+5)
1244 [GO] Microbiology Spectrum 2021―Aug―25 Identification of Novel Mutations in the N Gene of SARS-CoV-2 That Adversely Affect the Detection of the Virus by Reverse Transcription-Quantitative PCR Rashedul Hasan, Mohammad Enayet Hossain, Mojnu Miah, Md Mahmudul Hasan, Mustafizur Rahman, Mohammed Ziaur Rahman, S. Wesley Long
1245 [GO] mBio 2021―Aug―24 SARS-CoV-2 Bearing a Mutation at the S1/S2 Cleavage Site Exhibits Attenuated Virulence and Confers Protective Immunity Michihito Sasaki, Shinsuke Toba, Yukari Itakura, Herman M. Chambaro, Mai Kishimoto, Koshiro Tabata, et al. (+9)
1246 [GO] Microbiology Resource Announcements 2021―Aug―19 Phylogenetically Distinct Near-Complete Genome Sequences of Porcine Reproductive and Respiratory Syndrome Virus Type 2 Variants from Four Distinct Disease Outbreaks at U.S. Swine Farms over the Past 6 Years Declan C. Schroeder, Nkechi M. Odogwu, Jessica Kevill, My Yang, Venkatramana D. Krishna, Mariana Kikuti, et al. (+16)
1247 [GO] Journal of Clinical Microbiology 2021―Aug―18 Closing the Brief Case: Ventilator-Associated Corynebacterium accolens Pneumonia in a Patient with Respiratory Failure Due to COVID-19 Benjamin M. Liu, Emily M. Beck, Mark A. Fisher, Carey-Ann D. Burnham
1248 [GO] Journal of Clinical Microbiology 2021―Aug―18 The Brief Case: Ventilator-Associated Corynebacterium accolens Pneumonia in a Patient with Respiratory Failure Due to COVID-19 Benjamin M. Liu, Emily M. Beck, Mark A. Fisher, Carey-Ann D. Burnham
1249 [GO] Microbiology Spectrum 2021―Aug―18 Pre-Vaccine Positivity of SARS-CoV-2 Antibodies in Alberta, Canada during the First Two Waves of the COVID-19 Pandemic Carmen L. Charlton, Leonard T. Nguyen, Ashley Bailey, Jayne Fenton, Sabrina S. Plitt, Carol Marohn, et al. (+10)
1250 [GO] Microbiology Spectrum 2021―Aug―18 Comprehensive Characterization of COVID-19 Patients with Repeatedly Positive SARS-CoV-2 Tests Using a Large U.S. Electronic Health Record Database Xiao Dong, Yujia Zhou, Xiao-ou Shu, Elmer V. Bernstam, Rebecca Stern, David M. Aronoff, et al. (+3)
1251 [GO] Journal of Clinical Microbiology 2021―Aug―18 Cooperation Under Pressure: Lessons from the COVID-19 Swab Crisis Ramy Arnaout
1252 [GO] Journal of Virology 2021―Aug―18 Establishment of Full-length cDNA Clones and an Efficient Oral Infection Model for Feline Coronavirus in Cats Gang Wang, Guangli Hu, Rui Liang, Jiale Shi, Xiuxiu Qiu, Yiling Yang, et al. (+7)
1253 [GO] Microbiology Spectrum 2021―Aug―18 Saliva is Comparable to Nasopharyngeal Swabs for Molecular Detection of SARS-CoV-2 Cody Callahan, Sarah Ditelberg, Sanjucta Dutta, Nancy Littlehale, Annie Cheng, Kristin Kupczewski, et al. (+5)
1254 [GO] Journal of Virology 2021―Aug―18 Synergistic block of SARS-CoV-2 infection by combined drug inhibition of the host entry factors PIKfyve kinase and TMPRSS2 protease Alex J.B. Kreutzberger, Anwesha Sanyal, Ravi Ojha, Jesse D. Pyle, Olli Vapalahti, Giuseppe Balistreri, Tom Kirchhausen
1255 [GO] Microbiology Spectrum 2021―Aug―18 Erratum for Zhao et al., “Structural Basis and Function of the N Terminus of SARS-CoV-2 Nonstructural Protein 1” Kaitao Zhao, Zunhui Ke, Hongbing Hu, Yahui Liu, Aixin Li, Rong Hua, et al. (+9)
1256 [GO] Journal of Virology 2021―Aug―18 Natural isolate and recombinant SARS-CoV-2 rapidly evolve in vitro to higher infectivity through more efficient binding to heparan sulfate and reduced S1/S2 cleavage. Nikita Shiliaev, Tetyana Lukash, Oksana Palchevska, David K. Crossman, Todd J. Green, Michael R. Crowley, et al. (+2)
1257 [GO] Journal of Clinical Microbiology 2021―Aug―18 SARS-CoV-2 Serologic Assays Dependent on Dual-Antigen Binding Demonstrate Diverging Kinetics Relative to Other Antibody Detection Methods Elitza S. Theel, Patrick W. Johnson, Katie L. Kunze, Liang Wu, Amy P. Gorsh, Dane Granger, et al. (+14)
1258 [GO] Journal of Virology 2021―Aug―18 Deletion of A137R gene from the pandemic strain of African swine fever virus is attenuated and offers protection against virulent pandemic virus Douglas P. Gladue, Elizabeth Ramirez-Medina, Elizabeth Vuono, Ediane Silva, Ayushi Rai, Sarah Pruitt, et al. (+3)
1259 [GO] mBio 2021―Aug―17 Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome Carter Merenstein, Guanxiang Liang, Samantha A. Whiteside, Ana G. Cobián-Güemes, Madeline S. Merlino, Louis J. Taylor, et al. (+16)
1260 [GO] mBio 2021―Aug―17 Oral Bacteria Combined with an Intranasal Vaccine Protect from Influenza A Virus and SARS-CoV-2 Infection Minami Nagai, Miyu Moriyama, Takeshi Ichinohe, Diane E. Griffin
1261 [GO] mBio 2021―Aug―17 Regulation of the Dimerization and Activity of SARS-CoV-2 Main Protease through Reversible Glutathionylation of Cysteine 300 David A. Davis, Haydar Bulut, Prabha Shrestha, Amulya Yaparla, Hannah K. Jaeger, Shin-ichiro Hattori, et al. (+5)
1262 [GO] Microbiology Spectrum 2021―Aug―11 Performance Evaluation of the MatMaCorp COVID-19 2SF Assay for the Detection of SARS-CoV-2 from Nasopharyngeal Swabs Arryn Craney, Dustin Petrik, Ashley Suhku, Yuqing Qiu, Sabrina Racine-Brzostek, Hanna Rennert, et al. (+6)
1263 [GO] Microbiology Spectrum 2021―Aug―11 TMPRSS2 and RNA-Dependent RNA Polymerase Are Effective Targets of Therapeutic Intervention for Treatment of COVID-19 Caused by SARS-CoV-2 Variants (B.1.1.7 and B.1.351) Jihye Lee, JinAh Lee, Hyeon Ju Kim, Meehyun Ko, Youngmee Jee, Seungtaek Kim, Cyprian C. Rossetto
1264 [GO] Microbiology Spectrum 2021―Aug―11 Precision Response to the Rise of the SARS-CoV-2 B.1.1.7 Variant of Concern by Combining Novel PCR Assays and Genome Sequencing for Rapid Variant Detection and Surveillance Nathan Zelyas, Kanti Pabbaraju, Matthew A. Croxen, Tarah Lynch, Emily Buss, Stephanie A. Murphy, et al. (+5)
1265 [GO] Journal of Clinical Microbiology 2021―Aug―11 Sars-CoV-2 Genome Sequencing Methods Differ In Their Ability To Detect Variants From Low Viral Load Samples C. Lam, K. Gray, M. Gall, R. Sadsad, A. Arnott, J. Johnson-Mackinnon, et al. (+6)
1266 [GO] Journal of Virology 2021―Aug―11 A methyltransferase-defective VSV-based SARS-CoV-2 vaccine candidate provides complete protection against SARS-CoV-2 infection in hamsters Mijia Lu, Yuexiu Zhang, Piyush Dravid, Anzhong Li, Cong Zeng, Mahesh K. C., et al. (+16)
1267 [GO] Microbiology Spectrum 2021―Aug―11 Mild and Severe SARS-CoV-2 Infection Induces Respiratory and Intestinal Microbiome Changes in the K18-hACE2 Transgenic Mouse Model Brittany Seibert, C. Joaquín Cáceres, Stivalis Cardenas-Garcia, Silvia Carnaccini, Ginger Geiger, Daniela S. Rajao, et al. (+3)
1268 [GO] Microbiology Spectrum 2021―Aug―11 SARS-CoV-2 Isolates Show Impaired Replication in Human Immune Cells but Differential Ability to Replicate and Induce Innate Immunity in Lung Epithelial Cells Miao Jiang, Pekka Kolehmainen, Laura Kakkola, Sari Maljanen, Krister Melén, Teemu Smura, et al. (+3)
1269 [GO] mSphere 2021―Aug―11 Human Basigin (CD147) Does Not Directly Interact with SARS-CoV-2 Spike Glycoprotein Robert J. Ragotte, David Pulido, Francesca R. Donnellan, Michelle L. Hill, Giacomo Gorini, Hannah Davies, et al. (+9)
1270 [GO] Microbiology Spectrum 2021―Aug―11 Understanding the Barriers to Pooled SARS-CoV-2 Testing in the United States Eli P. Fenichel, R. Tobias Koch, Anna Gilbert, Gregg Gonsalves, Anne L. Wyllie, Rosemary C. She
1271 [GO] Journal of Clinical Microbiology 2021―Aug―11 Acquisition of the L452R mutation in the ACE2-binding interface of Spike protein triggers recent massive expansion of SARS-CoV-2 variants Veronika Tchesnokova, Hemantha Kulasekara, Lydia Larson, Victoria Bowers, Elena Rechkina, Dagmara Kisiela, et al. (+11)
1272 [GO] Journal of Clinical Microbiology 2021―Aug―11 The fall in antibody response to SARS-CoV-2: a longitudinal study of asymptomatic to critically ill patients up to 10 months after recovery Maddalena Peghin, Maria De Martino, Martina Fabris, Alvisa Palese, Erica Visintini, Elena Graziano, et al. (+11)
1273 [GO] Journal of Virology 2021―Aug―11 Porcine reproductive and respiratory syndrome virus infection upregulates negative immune regulators and T-cell exhaustion markers Jayeshbhai Chaudhari, Chia-Sin Liew, Jean-Jack M. Riethoven, Sarah Sillman, Hiep L. X. Vu
1274 [GO] mSystems 2021―Aug―10 Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus Smruthi Karthikeyan, Andrew Nguyen, Daniel McDonald, Yijian Zong, Nancy Ronquillo, Junting Ren, et al. (+11)
1275 [GO] mBio 2021―Aug―10 Specificity and Mechanism of Coronavirus, Rotavirus, and Mammalian Two-Histidine Phosphoesterases That Antagonize Antiviral Innate Immunity Abhishek Asthana, Christina Gaughan, Beihua Dong, Susan R. Weiss, Robert H. Silverman, Nancy C. Reich
1276 [GO] mBio 2021―Aug―10 Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury Amy C. Sims, Hugh D. Mitchell, Lisa E. Gralinski, Jennifer E. Kyle, Kristin E. Burnum-Johnson, Mariam Lam, et al. (+9)
1277 [GO] Microbiology Resource Announcements 2021―Aug―05 Whole-Genome Sequences of SARS-CoV-2 Lineage B.1.525 Strains (Variant η) Detected from Patients in the Abruzzo Region (Central Italy) during Spring 2021 Emiliano Delli Compagni, Iolanda Mangone, Barbara Bonfini, Annapia Di Gennaro, Liana Teodori, Alessandra Leone, et al. (+10)
1278 [GO] Microbiology Resource Announcements 2021―Aug―05 Near-Complete Genome Sequences of Nine SARS-CoV-2 Strains Harboring the D614G Mutation in Malaysia Ummu Afeera Zainulabid, Norhidayah Kamarudin, Ahmad Hafiz Zulkifly, Han Ming Gan, Darren Dean Tay, Shing Wei Siew, et al. (+7)
1279 [GO] Microbiology Spectrum 2021―Aug―04 COVID-19 Cases from the First Local Outbreak of the SARS-CoV-2 B.1.1.7 Variant in China May Present More Serious Clinical Features: A Prospective, Comparative Cohort Study Yang Song, Ziruo Ge, Shuping Cui, Di Tian, Gang Wan, Shuangli Zhu, et al. (+14)
1280 [GO] Journal of Clinical Microbiology 2021―Aug―04 Elevated Rates of Indeterminate Results on QuantiFERON®-TB Gold Plus in COVID-19 Patients Kileen L. Shier
1281 [GO] Microbiology Spectrum 2021―Aug―04 Evaluation of the INDICAID COVID-19 Rapid Antigen Test in Symptomatic Populations and Asymptomatic Community Testing Ricky Y. T. Chiu, Noah Kojima, Garrett L. Mosley, Kwok Kin Cheng, David Y. Pereira, Matthew Brobeck, et al. (+22)
1282 [GO] Microbiology Spectrum 2021―Aug―04 Differential Antibody Response to mRNA COVID-19 Vaccines in Healthy Subjects Sarah E. Wheeler, Galina V. Shurin, Mary Yost, Adam Anderson, Lisa Pinto, Alan Wells, et al. (+2)
1283 [GO] Journal of Clinical Microbiology 2021―Aug―04 Can Testing Predict SARS-CoV-2 Infectivity? The Potential for Certain Methods to be a Surrogate for Replication-Competent Virus Matthew J. Binnicker
1284 [GO] mSphere 2021―Aug―04 Overlapping of Independent SARS-CoV-2 Nosocomial Transmissions in a Complex Outbreak Laura Pérez-Lago, Helena Martínez-Lozano, Jose Antonio Pajares-Díaz, Arantxa Díaz-Gómez, Marina Machado, Pedro J. Sola-Campoy, et al. (+17)
1285 [GO] Microbiology Spectrum 2021―Aug―04 Transformations, Lineage Comparisons, and Analysis of Down-to-Up Protomer States of Variants of the SARS-CoV-2 Prefusion Spike Protein, Including the UK Variant B.1.1.7 Michael H. Peters, Oscar Bastidas, Daniel S. Kokron, Christopher E. Henze, Soo Chan Lee
1286 [GO] Microbiology Spectrum 2021―Aug―04 SARS-CoV-2 Quasispecies Provides an Advantage Mutation Pool for the Epidemic Variants Fengming Sun, Xiuhua Wang, Shun Tan, Yunjie Dan, Yanqiu Lu, Juan Zhang, et al. (+11)
1287 [GO] Journal of Clinical Microbiology 2021―Aug―04 A Real-World Comparison of SARS-CoV-2 Rapid Antigen vs. Polymerase Chain Reaction Testing in Florida Lao-Tzu Allan-Blitz, Jeffrey D. Klausner
1288 [GO] mSphere 2021―Aug―04 Progression of SARS-CoV-2 Seroprevalence in St. Louis, Missouri, through January 2021 Brittany K. Smith, Andrew B. Janowski, Arim C. Fremont, Lucas J. Adams, Ya-Nan Dai, Christopher W. Farnsworth, et al. (+5)
1289 [GO] mBio 2021―Aug―03 The TMPRSS2 Inhibitor Nafamostat Reduces SARS-CoV-2 Pulmonary Infection in Mouse Models of COVID-19 Kun Li, David K. Meyerholz, Jennifer A. Bartlett, Paul B. McCray, Matthew B. Frieman, Diane E. Griffin
1290 [GO] mSystems 2021―Aug―03 Catching SARS-CoV-2 by Sequence Hybridization: a Comparative Analysis Alexandra Rehn, Peter Braun, Mandy Knüpfer, Roman Wölfel, Markus H. Antwerpen, Mathias C. Walter, Rachel Mackelprang
1291 [GO] mBio 2021―Aug―03 Dynamics of SARS-CoV-2 Spike Proteins in Cell Entry: Control Elements in the Amino-Terminal Domains Enya Qing, Tom Kicmal, Binod Kumar, Grant M. Hawkins, Emily Timm, Stanley Perlman, et al. (+2)
1292 [GO] Antimicrobial Agents and Chemotherapy 2021―Aug―02 Candida auris Invasive Infections During a COVID-19 Case Surge Blake M. Hanson, An Q. Dinh, Truc T. Tran, Sebastian Arenas, Darryl Pronty, Hayley B. Gershengorn, et al. (+3)
1293 [GO] mBio 2021―Aug―02 Can Science Help Resolve the Controversy on the Origins of the SARS-CoV-2 Pandemic? Arturo Casadevall, Susan R. Weiss, Michael J. Imperiale
1294 [GO] Journal of Virology 2021―Jul―28 Kinetic multi-omic analysis of responses to SARS-CoV-2 infection in a model of severe COVID-19 Angelene M. Cantwell, Harinder Singh, Maryann Platt, Yanbao Yu, Yi-Han Lin, Yuji Ikeno, et al. (+4)
1295 [GO] Journal of Clinical Microbiology 2021―Jul―28 Performance characteristics of the Roche Diagnostics cobas® Liat® PCR System as a COVID-19 screening tool for hospital admissions in a regional healthcare delivery system Douglas Blackall, Raymond Moreno, Justin Jin, Rachel Plotinsky, Ronald Dworkin, Margret Oethinger
1296 [GO] Clinical Microbiology Reviews 2021―Jul―28 SARS-CoV-2 Antiviral Therapy Kaiming Tao, Philip L. Tzou, Janin Nouhin, Hector Bonilla, Prasanna Jagannathan, Robert W. Shafer
1297 [GO] Journal of Clinical Microbiology 2021―Jul―28 Assessment of SARS-CoV-2 genome sequencing: quality criteria and low frequency variants Damien Jacot, Trestan Pillonel, Gilbert Greub, Claire Bertelli
1298 [GO] Microbiology Spectrum 2021―Jul―28 High-Throughput Multiplex SARS-CoV-2 IgG Microsphere Immunoassay for Dried Blood Spots: A Public Health Strategy for Enhanced Serosurvey Capacity Linda M. Styer, Rebecca Hoen, Jean Rock, Erica Yauney, Katherine Nemeth, Rachel Bievenue, et al. (+2)
1299 [GO] mSphere 2021―Jul―28 Long-Term Evolution of SARS-CoV-2 in an Immunocompromised Patient with Non-Hodgkin Lymphoma Vítor Borges, Joana Isidro, Mário Cunha, Daniela Cochicho, Luís Martins, Luís Banha, et al. (+19)
1300 [GO] mBio 2021―Jul―27 Murine Monoclonal Antibodies against the Receptor Binding Domain of SARS-CoV-2 Neutralize Authentic Wild-Type SARS-CoV-2 as Well as B.1.1.7 and B.1.351 Viruses and Protect In Vivo in a Mouse Model in a Neutralization-Dependent Manner Fatima Amanat, Shirin Strohmeier, Wen-Hsin Lee, Sandhya Bangaru, Andrew B. Ward, Lynda Coughlan, et al. (+2)
1301 [GO] mBio 2021―Jul―27 Recovery from Acute SARS-CoV-2 Infection and Development of Anamnestic Immune Responses in T Cell-Depleted Rhesus Macaques Kim J. Hasenkrug, Friederike Feldmann, Lara Myers, Mario L. Santiago, Kejun Guo, Bradley S. Barrett, et al. (+19)
1302 [GO] mSystems 2021―Jul―27 Pathophysiology of SARS-CoV-2 Infection in the Upper Respiratory Tract and Its Relation to Breath Volatile Organic Compounds Moria Lichtenstein, Sondra Turjerman, Jayant M. Pinto, Orna Barash, Omry Koren, Jotham Suez
1303 [GO] mBio 2021―Jul―27 D614G Substitution of SARS-CoV-2 Spike Protein Increases Syncytium Formation and Virus Titer via Enhanced Furin-Mediated Spike Cleavage Ya-Wen Cheng, Tai-Ling Chao, Chiao-Ling Li, Sheng-Han Wang, Han-Chieh Kao, Ya-Min Tsai, et al. (+7)
1304 [GO] mBio 2021―Jul―27 B.1.526 SARS-CoV-2 Variants Identified in New York City are Neutralized by Vaccine-Elicited and Therapeutic Monoclonal Antibodies Hao Zhou, Belinda M. Dcosta, Marie I. Samanovic, Mark J. Mulligan, Nathaniel R. Landau, Takuya Tada, Vincent R. Racaniello
1305 [GO] mSystems 2021―Jul―27 Teaching with Microbes: Lessons from Fermentation during a Pandemic Megan A. Carney, Suzanne Lynn Ishaq
1306 [GO] Microbiology Resource Announcements 2021―Jul―22 Genomic Surveillance of SARS-CoV-2 Viruses Collected during the Ending Phase of the First Wave of the COVID-19 Pandemic in Bangladesh Munira Jahan, Arittra Bhattacharjee, Raad Rahmat, S. M. Rashedul Islam, Tahmina Akhter, Ishtiaque Ahammad, et al. (+4)
1307 [GO] Journal of Clinical Microbiology 2021―Jul―22 Unbiased Pandemic Pathogen Detection and the Federal Register Alexander L. Greninger
1308 [GO] Microbiology Spectrum 2021―Jul―21 Coinfections with Other Respiratory Pathogens among Patients with COVID-19 K. Sreenath, Priyam Batra, E. V. Vinayaraj, Ridhima Bhatia, KVP SaiKiran, Vishwajeet Singh, et al. (+9)
1309 [GO] mSphere 2021―Jul―21 Amplicon and Metagenomic Analysis of Middle East Respiratory Syndrome (MERS) Coronavirus and the Microbiome in Patients with Severe MERS Waleed Aljabr, Muhannad Alruwaili, Rebekah Penrice-Randal, Abdulrahman Alrezaihi, Abbie Jasmine Harrison, Yan Ryan, et al. (+24)
1310 [GO] Applied and Environmental Microbiology 2021―Jul―21 Assessment of antiviral coatings for high-touch surfaces using human coronaviruses HCoV-229E and SARS-CoV-2 S. Butot, L. Baert, S. Zuber
1311 [GO] Applied and Environmental Microbiology 2021―Jul―21 Heat-treated virus inactivation rate depends strongly on treatment procedure: illustration with SARS-CoV-2 Amandine Gamble, Robert J. Fischer, Dylan H. Morris, Kwe Claude Yinda, Vincent J. Munster, James O. Lloyd-Smith
1312 [GO] Journal of Clinical Microbiology 2021―Jul―21 Multicentre post-implementation assessment of the positive-predictive value of SARS-CoV-2 antigen-based point-of-care tests used for asymptomatic screening of continuing care staff Jamil N Kanji, Dustin T Proctor, William Stokes, Byron M Berenger, James Silvius, Graham Tipples, et al. (+2)
1313 [GO] Microbiology Spectrum 2021―Jul―21 Inactivation of SARS-CoV-2 by Simulated Sunlight on Contaminated Surfaces Jérémy Raiteux, Marine Eschlimann, Audrey Marangon, Sophie Rogée, Maylis Dadvisard, Laurent Taysse, et al. (+2)
1314 [GO] Journal of Clinical Microbiology 2021―Jul―21 Evaluation of cell-based and surrogate SARS-CoV-2 neutralization assays Anton M. Sholukh, Andrew Fiore-Gartland, Emily S. Ford, Maurine D. Miner, Yixuan J. Hou, Longping V. Tse, et al. (+24)
1315 [GO] Microbiology Spectrum 2021―Jul―21 Durable Antibody Responses in Staff at Two Long-Term Care Facilities, during and Post SARS-CoV-2 Outbreaks Emily N. Gallichotte, Mary Nehring, Michael C. Young, Sierra Pugh, Nicole R. Sexton, Emily Fitzmeyer, et al. (+8)
1316 [GO] Journal of Clinical Microbiology 2021―Jul―21 A Simple RT-PCR Melting temperature Assay to Rapidly Screen for Widely Circulating SARS-CoV-2 Variants. Padmapriya Banada, Raquel Green, Sukalyani Banik, Abby Chopoorian, Deanna Streck, Robert Jones, et al. (+2)
1317 [GO] Journal of Virology 2021―Jul―21 Characterisation of a novel ACE2-based therapeutic with enhanced rather than reduced activity against SARS-CoV-2 variants. Mathieu Ferrari, Leila Mekkaoui, F. Tudor Ilca, Zulaikha Akbar, Reyisa Bughda, Katarina Lamb, et al. (+14)
1318 [GO] mBio 2021―Jul―20 Tackling Antimicrobial Resistance in the Shadow of COVID-19 Ami Patel
1319 [GO] mBio 2021―Jul―20 Evolutionary Tracking of SARS-CoV-2 Genetic Variants Highlights an Intricate Balance of Stabilizing and Destabilizing Mutations Jobin John Jacob, Karthick Vasudevan, Agila Kumari Pragasam, Karthik Gunasekaran, Balaji Veeraraghavan, Ankur Mutreja, et al. (+2)
1320 [GO] Journal of Clinical Microbiology 2021―Jul―19 Closing the Brief Case: A Fatal Case of SARS-CoV-2 Coinfection with Coccidioides in Texas-Another Challenge We Face Marisa C. Nielsen, David Reynoso, Ping Ren, Carey-Ann D. Burnham
1321 [GO] Journal of Clinical Microbiology 2021―Jul―19 The Brief Case: A Fatal Case of SARS-CoV-2 Coinfection with Coccidioides in Texas-Another Challenge We Face Marisa C. Nielsen, David Reynoso, Ping Ren, Carey-Ann D. Burnham
1322 [GO] Microbiology Resource Announcements 2021―Jul―15 Coding-Complete Genome Sequences of 11 SARS-CoV-2 B.1.1.7 and B.1.351 Variants from Metro Manila, Philippines John Mark Velasco, Piyawan Chinnawirotpisan, Maria Theresa Valderama, Khajohn Joonlasak, Wudtichai Manasatienkij, Angkana Huang, et al. (+9)
1323 [GO] Microbiology Resource Announcements 2021―Jul―15 Genome Sequences of 15 SARS-CoV-2 Sublineage B.1.617.2 Strains in Bangladesh Mokibul Hassan Afrad, Manjur Hossain Khan, Sadia Isfat Ara Rahman, Omar Hamza Bin Manjur, Mohabbat Hossain, Ahmed Nawsher Alam, et al. (+7)
1324 [GO] Microbiology Spectrum 2021―Jul―14 Saliva Testing Is Accurate for Early-Stage and Presymptomatic COVID-19 Abigail J. Johnson, Shannon Zhou, Susan L. Hoops, Benjamin Hillmann, Matthew Schomaker, Robyn Kincaid, et al. (+7)
1325 [GO] Journal of Clinical Microbiology 2021―Jul―14 Performance of the Abbott SARS-CoV-2 IgG II Quantitative antibody assay including the new Variants of Concern (VOC 202012/V1 (UK) and VOC 202012/V2 (South Africa)): And first steps towards global harmonization of COVID-19 antibody methods Emma English, Laura E Cook, Isabelle Piec, Samir Dervisevic, William D Fraser, W. Garry John
1326 [GO] Journal of Clinical Microbiology 2021―Jul―14 EARLY LABORATORY DIAGNOSIS OF COVID-19 BY ANTIGEN DETECTION IN BLOOD SAMPLES OF THE SARS-COV-2 NUCLEOCAPSID PROTEIN Rebekka F. Thudium, Malene P. Stoico, Estrid Høgdall, Julie Høgh, Henrik B. Krarup, Margit A. H. Larsen, et al. (+6)
1327 [GO] Clinical Microbiology Reviews 2021―Jul―14 Erratum for Ramasamy and Subbian, “Critical Determinants of Cytokine Storm and Type I Interferon Response in COVID-19 Pathogenesis” Santhamani Ramasamy, Selvakumar Subbian
1328 [GO] Journal of Virology 2021―Jul―14 SARS-CoV-2 disrupts proximal elements in the JAK-STAT pathway Da-Yuan Chen, Nazimuddin Khan, Brianna J. Close, Raghuveera K. Goel, Benjamin Blum, Alexander H. Tavares, et al. (+13)
1329 [GO] Microbiology Spectrum 2021―Jul―14 Self-Collected Gargle Lavage Allows Reliable Detection of SARS-CoV-2 in an Outpatient Setting Johannes Zander, Stephan Scholtes, Maximilian Ottinger, Marcel Kremer, Azadeh Kharazi, Vanessa Stadler, et al. (+5)
1330 [GO] Journal of Clinical Microbiology 2021―Jul―14 Considerations from the College of American Pathologists for implementation of an assay for SARS-CoV-2 testing after a change in regulatory status David R. Peaper, Daniel D. Rhoads, Kaede V. Sullivan, Marc R. Couturier, Romney M. Humphries, Isabella W. Martin, et al. (+6)
1331 [GO] mBio 2021―Jul―13 Sex Differences in Lung Imaging and SARS-CoV-2 Antibody Responses in a COVID-19 Golden Syrian Hamster Model Santosh Dhakal, Camilo A. Ruiz-Bedoya, Ruifeng Zhou, Patrick S. Creisher, Jason S. Villano, Kirsten Littlefield, et al. (+25)
1332 [GO] mSystems 2021―Jul―13 RNA-Protein Interaction Analysis of SARS-CoV-2 5′ and 3′ Untranslated Regions Reveals a Role of Lysosome-Associated Membrane Protein-2a during Viral Infection Rohit Verma, Sandhini Saha, Shiv Kumar, Shailendra Mani, Tushar Kanti Maiti, Milan Surjit, Marta M. Gaglia
1333 [GO] Antimicrobial Agents and Chemotherapy 2021―Jul―12 Why Remdesivir Failed: Preclinical Assumptions Overestimate the Clinical Efficacy of Remdesivir for COVID-19 and Ebola Victoria C. Yan, Florian L. Muller
1334 [GO] Microbiology Resource Announcements 2021―Jul―08 Genome Sequences of Two Novel Coronavirus (SARS-CoV-2) Isolates from Dhaka, Bangladesh M. Abdul Matin, Abdullah Al Nahid, Bishajit Sarkar, M. Asad Ullah, Yusha Araf, Nihad Adnan, et al. (+3)
1335 [GO] Microbiology Resource Announcements 2021―Jul―08 Genome Sequence of a SARS-CoV-2 P.1 Variant of Concern (20J/501Y.V3) from Bangladesh M. Murshed Hasan Sarkar, Mohammad Fazle Alam Rabbi, Shahina Akter, Tanjina Akhtar Banu, Barna Goswami, Iffat Jahan, et al. (+12)
1336 [GO] Journal of Clinical Microbiology 2021―Jul―07 Indeterminate QuantiFERON Gold Plus results reveal deficient IFN-γ responses in severely ill COVID-19 patients Jeremy D. Ward, Caleb Cornaby, John Schmitz
1337 [GO] mSphere 2021―Jul―07 Longitudinal COVID-19 Surveillance and Characterization in the Workplace with Public Health and Diagnostic Endpoints Manjula Gunawardana, Jessica Breslin, John M. Cortez, Sofia Rivera, Simon Webster, F. Javier Ibarrondo, et al. (+7)
1338 [GO] mBio 2021―Jul―06 Methyltransferase-like 3 Modulates Severe Acute Respiratory Syndrome Coronavirus-2 RNA N6-Methyladenosine Modification and Replication Xueyan Zhang, Haojie Hao, Li Ma, Yecheng Zhang, Xiao Hu, Zhen Chen, et al. (+5)
1339 [GO] mBio 2021―Jul―06 Replicative Fitness of a SARS-CoV-2 20I/501Y.V1 Variant from Lineage B.1.1.7 in Human Reconstituted Bronchial Epithelium Franck Touret, Léa Luciani, Cécile Baronti, Maxime Cochin, Jean-Sélim Driouich, Magali Gilles, et al. (+4)
1340 [GO] Journal of Clinical Microbiology 2021―Jul―02 Evaluation of a rapid antigen test to detect SARS-CoV-2 infection and identify potentially infectious individuals Michael Korenkov, Nareshkumar Poopalasingam, Matthias Madler, Kanika Vanshylla, Ralf Eggeling, Maike Wirtz, et al. (+9)
1341 [GO] Microbiology Resource Announcements 2021―Jul―01 New SARS-CoV-2 Variant from Jordan Lo’ai Alanagreh, Mustafa Ababneh, Abdel-Ellah Al-Shudifat, Mai Ajlouny, Hanan Abu-Shaikh, Foad Alzoughool, et al. (+4)
1342 [GO] Journal of Clinical Microbiology 2021―Jun―30 Evaluation of the performance of the Associates of Cape Cod STAT™ assay for the diagnosis of invasive fungal disease in critical-care patients with COVID-19. P. Lewis White, Jessica S. Price, Matthijs Backx
1343 [GO] Journal of Clinical Microbiology 2021―Jun―30 Increasing the efficiency of a national laboratory response to COVID-19; a nation-wide multicenter evaluation of 47 commercial SARS-CoV-2 immunoassays by 41 laboratories Maaike J. C. van den Beld, Jean-Luc Murk, Jan Kluytmans, Marion P. G. Koopmans, Johan Reimerink, Inge H. M. van Loo, et al. (+4)
1344 [GO] Journal of Clinical Microbiology 2021―Jun―30 Comparing Results of Five SARS-CoV-2 Antibody Assays Before and After the First Dose of ChAdOx1 nCoV-19 Vaccine among Health Care Workers Seri Jeong, Nuri Lee, Su Kyung Lee, Eun-Jung Cho, Jungwon Hyun, Min-Jeong Park, et al. (+6)
1345 [GO] Journal of Virology 2021―Jun―30 Construction of a non-infectious SARS-CoV-2 replicon for antiviral drug testing and gene function studies Hai Trong Nguyen, Darryl Falzarano, Volker Gerdts, Qiang Liu
1346 [GO] Journal of Clinical Microbiology 2021―Jun―30 Implementation of SARS-CoV2 Screening in K-12 Schools using In-School Pooled Molecular Testing and Deconvolution by Rapid Antigen Test Nira R. Pollock, David Berlin, Sandra C. Smole, Lawrence C. Madoff, Catherine Brown, Kelsey Henderson, et al. (+5)
1347 [GO] Journal of Clinical Microbiology 2021―Jun―30 Assessing the quality of serological testing in the CoViD-19 pandemic: results of a European external quality assessment (EQA) scheme for anti-SARS-CoV-2 antibody detection Volker Ast, Victor Costina, Romy Eichner, Anna Bode, Sihem Aida, Catharina Gerhards, et al. (+6)
1348 [GO] Applied and Environmental Microbiology 2021―Jun―30 Biofilms and coronaviruses reservoirs: a perspective review Rafael Gomes Von Borowski, Danielle Silva Trentin
1349 [GO] Microbiology Spectrum 2021―Jun―30 Anti-Spike Protein Assays to Determine SARS-CoV-2 Antibody Levels: a Head-to-Head Comparison of Five Quantitative Assays Thomas Perkmann, Nicole Perkmann-Nagele, Thomas Koller, Patrick Mucher, Astrid Radakovics, Rodrig Marculescu, et al. (+5)
1350 [GO] mSphere 2021―Jun―30 Molecular Epidemiology of SARS-CoV-2 in Greece Reveals Low Rates of Onward Virus Transmission after Lifting of Travel Restrictions Based on Risk Assessment during Summer 2020 Evangelia Georgia Kostaki, Georgios A. Pavlopoulos, Kleio-Maria Verrou, Giannis Ampatziadis-Michailidis, Vaggelis Harokopos, Pantelis Hatzis, et al. (+27)
1351 [GO] Journal of Clinical Microbiology 2021―Jun―30 Diagnostic accuracy of SARS-CoV-2 rapid antigen detection testing in symptomatic and asymptomatic children in the clinical setting Arnaud G. L’Huillier, Matthieu Lacour, Debora Sadiku, Mehdi A. Gadiri, Loraine De Siebenthal, Manuel Schibler, et al. (+7)
1352 [GO] mBio 2021―Jun―29 Diverse Humoral Immune Responses in Younger and Older Adult COVID-19 Patients Jennifer M. Sasson, Joseph J. Campo, Rebecca M. Carpenter, Mary K. Young, Arlo Z. Randall, Krista Trappl-Kimmons, et al. (+10)
1353 [GO] mBio 2021―Jun―29 Identification of a High-Frequency Intrahost SARS-CoV-2 Spike Variant with Enhanced Cytopathic and Fusogenic Effects Lynda Rocheleau, Geneviève Laroche, Kathy Fu, Corina M. Stewart, Abdulhamid O. Mohamud, Marceline Côté, et al. (+4)
1354 [GO] Antimicrobial Agents and Chemotherapy 2021―Jun―28 Pharmacokinetics and safety of XAV-19, a swine glyco-humanized polyclonal anti-SARS-CoV-2 antibody, for COVID-19-related moderate pneumonia: a randomized, double-blind, placebo-controlled, phase IIa study Benjamin Gaborit, Eric Dailly, Bernard Vanhove, Régis Josien, Karine Lacombe, Vincent Dubee, et al. (+13)
1355 [GO] Journal of Clinical Microbiology 2021―Jun―24 Anti-SARS-CoV-2 antibody levels measured by the Advise Dx SARS-CoV-2 assay are concordant with previously available serologic assays but are not fully predictive of sterilizing immunity Benjamin T. Bradley, Andrew Bryan, Susan L. Fink, Erin A. Goecker, Pavitra Roychoudhury, Meei-Li Huang, et al. (+16)
1356 [GO] Journal of Virology 2021―Jun―23 SARS-CoV-2 spike protein induces paracrine senescence and leukocyte adhesion in endothelial cells Keith Meyer, Tapas Patra, Ranjit Ray
1357 [GO] mSphere 2021―Jun―23 Replication Kinetics, Cell Tropism, and Associated Immune Responses in SARS-CoV-2- and H5N1 Virus-Infected Human Induced Pluripotent Stem Cell-Derived Neural Models Lisa Bauer, Bas Lendemeijer, Lonneke Leijten, Carmen W. E. Embregts, Barry Rockx, Steven A. Kushner, et al. (+3)
1358 [GO] mBio 2021―Jun―22 Allosteric Activation of SARS-CoV-2 RNA-Dependent RNA Polymerase by Remdesivir Triphosphate and Other Phosphorylated Nucleotides Bing Wang, Vladimir Svetlov, Yuri I. Wolf, Eugene V. Koonin, Evgeny Nudler, Irina Artsimovitch, Richard Gerald Brennan
1359 [GO] Antimicrobial Agents and Chemotherapy 2021―Jun―17 Erratum for Lu et al., “Development of a Simple In Vitro Assay To Identify and Evaluate Nucleotide Analogs against SARS-CoV-2 RNA-Dependent RNA Polymerase” Gaofei Lu, Xi Zhang, Weinan Zheng, Jialei Sun, Lan Hua, Lan Xu, et al. (+3)
1360 [GO] Journal of Virology 2021―Jun―16 Contribution of SARS-CoV-2 accessory proteins to viral pathogenicity in K18 hACE2 transgenic mice Jesus A. Silvas, Desarey Morales Vasquez, Jun-Gyu Park, Kevin Chiem, Anna Allué-Guardia, Andreu Garcia-Vilanova, et al. (+11)
1361 [GO] mSphere 2021―Jun―16 SARS-CoV-2 B.1.1.7 Infection of Syrian Hamster Does Not Cause More Severe Disease, and Naturally Acquired Immunity Confers Protection Ivette A. Nuñez, Christopher Z. Lien, Prabhuanand Selvaraj, Charles B. Stauft, Shufeng Liu, Matthew F. Starost, et al. (+2)
1362 [GO] Microbiology Spectrum 2021―Jun―16 Structural Basis and Function of the N Terminus of SARS-CoV-2 Nonstructural Protein 1 Kaitao Zhao, Zunhui Ke, Hongbing Hu, Yahui Liu, Aixin Li, Rong Hua, et al. (+10)
1363 [GO] Journal of Virology 2021―Jun―16 SARS-CoV-2 NSP12 protein is not an IFN-β antagonist Aixin Li, Kaitao Zhao, Bei Zhang, Rong Hua, Yujie Fang, Wuhui Jiang, et al. (+8)
1364 [GO] Microbiology Spectrum 2021―Jun―16 Spike Protein Antibodies Mediate the Apparent Correlation between SARS-CoV-2 Nucleocapsid Antibodies and Neutralization Test Results Thomas Perkmann, Thomas Koller, Nicole Perkmann-Nagele, Miriam Klausberger, Mark Duerkop, Barbara Holzer, et al. (+8)
1365 [GO] Journal of Clinical Microbiology 2021―Jun―16 Evaluation of Self-Collected Mid-Turbinate Nasal Swabs and Saliva for Detection of SARS-CoV-2 RNA Aimee C. Boerger, Seanne Buckwalter, Emily C. Fernholz, Paul J. Jannetto, Matthew J. Binnicker, Katelyn Reed, et al. (+4)
1366 [GO] mSphere 2021―Jun―16 Liquid Chalk Is an Antiseptic against SARS-CoV-2 and Influenza A Respiratory Viruses Julie L. McAuley, Joshua M. Deerain, William Hammersla, Turgut E. Aktepe, Damian F. J. Purcell, Jason M. Mackenzie, Matthew B. Frieman
1367 [GO] mSystems 2021―Jun―15 Rapid Increase of SARS-CoV-2 Variant B.1.1.7 Detected in Sewage Samples from England between October 2020 and January 2021 Thomas Wilton, Erika Bujaki, Dimitra Klapsa, Manasi Majumdar, Maria Zambon, Martin Fritzsche, et al. (+3)
1368 [GO] Molecular and Cellular Biology 2021―Jun―14 Understanding individual SARS-CoV-2 proteins for targeted drug development against COVID-19 Joyce van de Leemput, Zhe Han
1369 [GO] Microbiology Spectrum 2021―Jun―13 Genomic and Phenotypic Analysis of COVID-19-Associated Pulmonary Aspergillosis Isolates of Aspergillus fumigatus Jacob L. Steenwyk, Matthew E. Mead, Patrícia Alves de Castro, Clara Valero, André Damasio, Renato A. C. dos Santos, et al. (+12)
1370 [GO] Journal of Virology 2021―Jun―13 Viral and host transcriptomes in SARS-CoV-2 infected human lung cells Xuefeng Wang, Yudong Zhao, Feihu Yan, Tiecheng Wang, Weiyang Sun, Na Feng, et al. (+6)
1371 [GO] Journal of Virology 2021―Jun―13 N- (4-Hydroxyphenyl) retinamide suppresses SARS-CoV-2 spike protein-mediated cell-cell fusion by a dihydroceramide Δ4-desaturase 1-independent mechanism Yasuhiro Hayashi, Kiyoto Tsuchiya, Mizuki Yamamoto, Yoko Nemoto-Sasaki, Kazunari Tanigawa, Kotaro Hama, et al. (+6)
1372 [GO] Journal of Virology 2021―Jun―13 V367F mutation in SARS-CoV-2 spike RBD emerging during the early transmission phase enhances viral infectivity through increased human ACE2 receptor binding affinity Junxian Ou, Zhonghua Zhou, Ruixue Dai, Jing Zhang, Shan Zhao, Xiaowei Wu, et al. (+10)
1373 [GO] Antimicrobial Agents and Chemotherapy 2021―Jun―13 Hepatitis C Virus Protease Inhibitors Show Differential Efficacy and Interactions with Remdesivir for Treatment of SARS-CoV-2 in Vitro Karen A. Gammeltoft, Yuyong Zhou, Carlos R. Duarte Hernandez, Andrea Galli, Anna Offersgaard, Rui Costa, et al. (+7)
1374 [GO] Journal of Clinical Microbiology 2021―Jun―11 At-home Specimen Self-Collection and Self-Testing for STI Screening Demand Accelerated by the COVID-19 Pandemic - A Review of Laboratory Implementation Issues Ellen N. Kersh, Mayur Shukla, Brian H. Raphael, Melissa Habel, Ina Park
1375 [GO] mSphere 2021―Jun―11 Temporal Kinetics of RNAemia and Associated Systemic Cytokines in Hospitalized COVID-19 Patients Debby van Riel, Carmen W. E. Embregts, Gregorius J. Sips, Johannes P. C. van den Akker, Henrik Endeman, Els van Nood, et al. (+8)
1376 [GO] mSphere 2021―Jun―11 Antibody Response against SARS-CoV-2 and Seasonal Coronaviruses in Nonhospitalized COVID-19 Patients Natalia Ruetalo, Ramona Businger, Karina Althaus, Simon Fink, Felix Ruoff, Michaela Pogoda, et al. (+8)
1377 [GO] Journal of Clinical Microbiology 2021―Jun―11 Nasal Swab Performance by Collection Timing, Procedure, and Method of Transport for Patients with SARS-CoV-2 Cody Callahan, Rose A. Lee, Ghee Rye Lee, Kate Zulauf, James E. Kirby, Ramy Arnaout
1378 [GO] Microbiology Resource Announcements 2021―Jun―11 Accessible and Validated Processing of SARS-CoV-2 from Wastewater Nicole C. Rondeau, Oliver J. Rose, Lina A. Ariyan, Brian J. Mailloux, JJ L. Miranda, Irene L. G. Newton
1379 [GO] Microbiology Resource Announcements 2021―Jun―11 Genome Sequences of SARS-CoV-2 P.1 (Variant of Concern) and P.2 (Variant of Interest) Identified in Uruguay Yanina Panzera, Natalia Goñi, Lucía Calleros, Natalia Ramos, Sandra Frabasile, Ana Marandino, et al. (+15)
1380 [GO] mBio 2021―Jun―11 Convalescent-Phase Sera and Vaccine-Elicited Antibodies Largely Maintain Neutralizing Titer against Global SARS-CoV-2 Variant Spikes Takuya Tada, Belinda M. Dcosta, Marie I. Samanovic, Ramin S. Herati, Amber Cornelius, Hao Zhou, et al. (+5)
1381 [GO] mSphere 2021―Jun―11 IMMUNO-COV v2.0: Development and Validation of a High-Throughput Clinical Assay for Measuring SARS-CoV-2-Neutralizing Antibody Titers Rianna Vandergaast, Timothy Carey, Samantha Reiter, Chase Lathrum, Patrycja Lech, Clement Gnanadurai, et al. (+18)
1382 [GO] Journal of Virology 2021―Jun―11 Identification of an intramolecular switch that controls the interaction of the helicase nsp10 with the membrane-associated nsp12 of porcine reproductive and respiratory syndrome virus Yunhao Hu, Purui Ke, Peng Gao, Yongning Zhang, Lei Zhou, Xinna Ge, et al. (+3)
1383 [GO] Microbiology Resource Announcements 2021―Jun―11 Complete Coding Genome Sequence of a Novel Porcine Reproductive and Respiratory Syndrome Virus 2 Restriction Fragment Length Polymorphism 1-4-4 Lineage 1C Variant Identified in Iowa, USA Giovani Trevisan, Ganwu Li, Cesar A. A. Moura, Katie Coleman, Pete Thomas, Jianqiang Zhang, et al. (+4)
1384 [GO] Microbiology Resource Announcements 2021―Jun―09 Metatranscriptomic Analysis Reveals SARS-CoV-2 Mutations in Wastewater of the Frankfurt Metropolitan Area in Southern Germany Shelesh Agrawal, Laura Orschler, Susanne Lackner, Simon Roux
1385 [GO] Journal of Clinical Microbiology 2021―Jun―05 Multiplex SARS-CoV-2 Genotyping RT-PCR for Population-Level Variant Screening and Epidemiologic Surveillance Hannah Wang, Jacob A. Miller, Michelle Verghese, Mamdouh Sibai, Daniel Solis, Kenji O. Mfuh, et al. (+8)
1386 [GO] Journal of Virology 2021―Jun―04 Coronavirus PEDV nucleocapsid protein interacts with p53 to induce cell cycle arrest in S-phase and promotes viral replication Mingjun Su, Da Shi, Xiaoxu Xing, Shanshan Qi, Dan Yang, Jiyu Zhang, et al. (+11)
1387 [GO] Journal of Clinical Microbiology 2021―Jun―03 Plaque assay and improved yield of human coronaviruses in a human rhabdomyosarcoma cell line O W Schmidt, M K Cooney, G E Kenny
1388 [GO] Journal of Microbiology and Biology Education 2021―May―31 Moving a Flipped Class Online To Teach Python to Biomedical Ph.D. Students during COVID-19 and Beyond Nathalie A. Vladis, Bradley I. Coleman
1389 [GO] Microbiology Spectrum 2021―May―31 Pandemics and People Michael J. Imperiale, Patricia A Bradford
1390 [GO] Microbiology Resource Announcements 2021―May―30 Genome Sequencing Identified a SARS-CoV-2 Lineage B.1.1.7 Strain with a High Number of Mutations from Dhaka, Bangladesh Razib Mazumder, Ahmed Abdullah, Mohammad Enayet Hossain, M. Mahfuzur Rahman, Omar Hamza Bin Manjur, Mustafizur Rahman, et al. (+2)
1391 [GO] Journal of Clinical Microbiology 2021―May―29 Detection of neonatal calf diarrhea virus, infant reovirus-like diarrhea virus, and a coronavirus using the fluorescent virus precipitin test M W Peterson, R S Spendlove, R A Smart
1392 [GO] Microbiology Resource Announcements 2021―May―28 Genome Sequence of a SARS-CoV-2 VUI 202012/01 Strain Identified from a Patient Returning from London, England, to the Apulia Region of Italy Daniela Loconsole, Anna Sallustio, Marisa Accogli, Francesca Centrone, Loredana Capozzi, Laura Del Sambro, et al. (+3)
1393 [GO] Journal of Clinical Microbiology 2021―May―26 Quantitation of Antibody to Non-Hemagglutinating Viruses by Single Radial Hemolysis: Serological Test for Human Coronaviruses John C. Hierholzer, Gregory A. Tannock
1394 [GO] mSphere 2021―May―25 Shedding of Viable Virus in Asymptomatic SARS-CoV-2 Carriers Takayuki Murata, Aki Sakurai, Masahiro Suzuki, Satoshi Komoto, Tomihiko Ide, Takuma Ishihara, et al. (+2)
1395 [GO] Journal of Clinical Microbiology 2021―May―20 Mutation-specific SARS-CoV-2 PCR Screen: Rapid and Accurate Detection of Variants of Concern and the Identification of a Newly Emerging Variant with Spike L452R Mutation Huanyu Wang, Sophonie Jean, Richard Eltringham, John Madison, Pamela Snyder, Huolin Tu, et al. (+2)
1396 [GO] Journal of Virology 2021―May―19 Structural analysis of the OC43 coronavirus 2′-O-RNA methyltransferase Pavel Dostalik, Petra Krafcikova, Jan Silhan, Jan Kozic, Dominika Chalupska, Karel Chalupsky, Evzen Boura
1397 [GO] Journal of Virology 2021―May―19 Unique mutations in the MHV macrodomain differentially attenuate virus replication, indicating multiple roles for the macrodomain in coronavirus replication Lynden S. Voth, Joseph J. O’Connor, Catherine M. Kerr, Ethan Doerger, Nancy Schwarting, Parker Sperstad, et al. (+2)
1398 [GO] Microbiology Resource Announcements 2021―May―19 Complete Genome Sequence of a SARS-CoV-2 Strain Sampled in Morocco in May 2020, Obtained Using Sanger Sequencing Abderrazak Rfaki, Nadia Touil, Mouhssine Hemlali, Sanaâ Alaoui Amine, Marouane Melloul, Moulay Abdelaziz El Alaoui, et al. (+6)
1399 [GO] mSphere 2021―May―18 High-Surety Isothermal Amplification and Detection of SARS-CoV-2 Sanchita Bhadra, Timothy E. Riedel, Simren Lakhotia, Nicholas D. Tran, Andrew D. Ellington, Angela L. Rasmussen
1400 [GO] Antimicrobial Agents and Chemotherapy 2021―May―17 Nodosome inhibition as a novel broad-spectrum antiviral strategy against arboviruses, enteroviruses and SARS-CoV-2 Daniel Limonta, Lovely Dyna-Dagman, William Branton, Valeria Mancinelli, Tadashi Makio, Richard W. Wozniak, et al. (+2)
1401 [GO] Journal of Virology 2021―May―13 Host-virus chimeric events in SARS-CoV2 infected cells are infrequent and artifactual Bingyu Yan, Srishti Chakravorty, Carmen Mirabelli, Luopin Wang, Jorge L. Trujillo-Ochoa, Daniel Chauss, et al. (+6)
1402 [GO] mSphere 2021―May―12 Leptin Deficiency, Caused by Malnutrition, Makes You Susceptible to SARS-CoV-2 Infection but Could Offer Protection from Severe COVID-19 Dewald Schoeman, Burtram C. Fielding, Marcela F. Pasetti
1403 [GO] mSphere 2021―May―12 Antibody (Serology) Tests for COVID-19: a Case Study Rachel M. West, Amanda Kobokovich, Nancy Connell, Gigi Kwik Gronvall, Michael J. Imperiale
1404 [GO] Clinical Microbiology Reviews 2021―May―11 Critical Determinants of Cytokine Storm and Type I Interferon Response in COVID-19 Pathogenesis Santhamani Ramasamy, Selvakumar Subbian
1405 [GO] Clinical Microbiology Reviews 2021―May―11 Tools and Techniques for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/COVID-19 Detection Seyed Hamid Safiabadi Tali, Jason J. LeBlanc, Zubi Sadiq, Oyejide Damilola Oyewunmi, Carolina Camargo, Bahareh Nikpour, et al. (+3)
1406 [GO] mSphere 2021―May―11 Temporal Dynamics and Evolution of SARS-CoV-2 Demonstrate the Necessity of Ongoing Viral Genome Sequencing in Ontario, Canada Calvin P. Sjaarda, Jennifer L. Guthrie, Samira Mubareka, Jared T. Simpson, Bettina Hamelin, Henry Wong, et al. (+15)
1407 [GO] Antimicrobial Agents and Chemotherapy 2021―May―11 Tolerability, Safety, Pharmacokinetics, and Immunogenicity of a Novel SARS-CoV-2 Neutralizing Antibody, Etesevimab in Chinese Healthy Adults: A Randomized, Double-Blind, Placebo-Controlled, First-In-Human Phase 1 Study Xiaojie Wu, Nanyang Li, Guoqin Wang, Wei Liu, Jicheng Yu, Guoying Cao, et al. (+15)
1408 [GO] Journal of Clinical Microbiology 2021―May―11 Estimating the false positive rate of highly automated SARS-CoV-2 nucleic acid amplification testing Christopher M. Chandler, Lori Bourassa, Patrick C. Mathias, Alexander L. Greninger
1409 [GO] Journal of Clinical Microbiology 2021―May―11 Endemic SARS-CoV-2 polymorphisms can cause a higher diagnostic target failure rate than estimated by aggregate global sequencing data Daniel D. Rhoads, David Plunkett, Joy Nakitandwe, Andrew Dempsey, Zheng Jin Tu, Gary W. Procop, et al. (+4)
1410 [GO] mSystems 2021―May―10 Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment Ronan Lordan, Halie M. Rando, Casey S. Greene, Jack A. Gilbert
1411 [GO] Journal of Clinical Microbiology 2021―May―10 Performance of three SARS-CoV-2 immunoassays, three rapid lateral flow tests and a novel bead-based affinity surrogate test for the detection of SARS-CoV-2 antibodies in human serum Manuel Krone, Julia Gütling, Johannes Wagener, Thiên-Trí Lâm, Christoph Schoen, Ulrich Vogel, et al. (+11)
1412 [GO] mBio 2021―May―10 The SARS-CoV-2 Transcriptome and the Dynamics of the S Gene Furin Cleavage Site in Primary Human Airway Epithelia Wei Zou, Min Xiong, Siyuan Hao, Elizabeth Yan Zhang, Nathalie Baumlin, Michael D. Kim, et al. (+4)
1413 [GO] mBio 2021―May―10 An Engineered Receptor-Binding Domain Improves the Immunogenicity of Multivalent SARS-CoV-2 Vaccines Yan Guo, Wenhui He, Huihui Mou, Lizhou Zhang, Jing Chang, Shoujiao Peng, et al. (+10)
1414 [GO] Applied and Environmental Microbiology 2021―May―10 Persistence of SARS-CoV-2 virus and viral RNA in relation to surface type and contamination concentration Susan Paton, Antony Spencer, Isobel Garratt, Katy-Anne Thompson, Ikshitaa Dinesh, Paz Aranega-Bou, et al. (+5)
1415 [GO] mBio 2021―May―10 Analysis of the Evolution of Pandemic Influenza A(H1N1) Virus Neuraminidase Reveals Entanglement of Different Phenotypic Characteristics Meiling Dai, Wenjuan Du, Carles Martínez-Romero, Tim Leenders, Tom Wennekes, Guus F. Rimmelzwaan, et al. (+6)
1416 [GO] mSphere 2021―May―07 The Stability of Model Human Coronaviruses on Textiles in the Environment and during Health Care Laundering Lucy Owen, Maitreyi Shivkumar, Katie Laird, Anice C. Lowen
1417 [GO] Journal of Clinical Microbiology 2021―May―06 Genomic elucidation of a COVID-19 resurgence and local transmission of SARS-CoV-2 in Guangzhou, China Hong-Ling Jia, Peng Li, Hong-Jie Liu, Jia-Yong Zhong, Peng-Zhe Qin, Wen-Zhe Su, et al. (+18)
1418 [GO] Journal of Virology 2021―May―06 ILRUN downregulates ACE2 expression and blocks infection of human cells by SARS-CoV-2 Leon Tribolet, Marina R. Alexander, Aaron M. Brice, Petrus Jansen van Vuren, Christina L. Rootes, Kostlend Mara, et al. (+7)
1419 [GO] Journal of Clinical Microbiology 2021―May―06 Laboratory worker self-contamination with non-infectious SARS-CoV-2 DNA can result in false positive RT-PCR-based surveillance testing Theresa L. Montgomery, Michelle Paavola, Emily A. Bruce, Jason W. Botten, Jessica W. Crothers, Dimitry N. Krementsov
1420 [GO] Journal of Virology 2021―May―06 Targeting the conserved stem loop 2 motif in the SARS-CoV-2 genome Valeria Lulla, Michal P. Wandel, Katarzyna J. Bandyra, Rachel Ulferts, Mary Wu, Tom Dendooven, et al. (+12)
1421 [GO] Journal of Virology 2021―May―06 SARS-CoV-2 spike protein stabilized in the closed state induces potent neutralizing responses. George W. Carnell, Katarzyna A. Ciazynska, David A. Wells, Xiaoli Xiong, Ernest T. Aguinam, Stephen H. McLaughlin, et al. (+10)
1422 [GO] Journal of Clinical Microbiology 2021―May―06 Identification of a SARS-CoV-2 Variant with L452R and E484Q Neutralization Resistance Mutations Michelle Verghese, Becky Jiang, Naomi Iwai, Marilyn Mar, Malaya K. Sahoo, Fumiko Yamamoto, et al. (+5)
1423 [GO] Microbiology Resource Announcements 2021―May―05 Detection and Genome Sequencing of SARS-CoV-2 Variants Belonging to the B.1.1.7 Lineage in the Philippines Francis A. Tablizo, Cynthia P. Saloma, Marc Jerrone R. Castro, Kenneth M. Kim, Maria Sofia L. Yangzon, Carlo M. Lapid, et al. (+27)
1424 [GO] Journal of Virology 2021―May―05 A cell culture-adapted vaccine virus against the current pandemic African swine fever virus strain M. V. Borca, A. Rai, E. Ramirez-Medina, E. Silva, L. Velazquez-Salinas, E. Vuono, et al. (+3)
1425 [GO] mBio 2021―May―03 Galectin-9, a Player in Cytokine Release Syndrome and a Surrogate Diagnostic Biomarker in SARS-CoV-2 Infection Najmeh Bozorgmehr, Siavash Mashhouri, Eliana Perez Rosero, Lai Xu, Shima Shahbaz, Wendy Sligl, et al. (+6)
1426 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 The Challenges of Teaching Anatomy and Physiology Laboratory Online in the Time of COVID-19 Claudette P. Davis, Tommy Pinedo
1427 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 A Crucial Role for Antimicrobial Stewardship in the Midst of COVID-19 Bindu S. Mayi, Manda Mainville, Rida Altaf, Michelle Lanspa, Sheel Vaniawala, Thomas A. Ollerhead, Aarti Raja
1428 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Using Virtual Simulations in Online Laboratory Instruction and Active Learning Exercises as a Response to Instructional Challenges during COVID-19 Kanwal S. Alvarez
1429 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Maintaining Student Engagement during an Abrupt Instructional Transition: Lessons Learned from COVID-19 Siena Senn, David R. Wessner
1430 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 CURE in Antibiotic Discovery Using a Combination of In-Person, Hands-On Laboratory Activities and Remote, Mentor-Type Experiences during COVID-19 † Mary Ann V. Smith
1431 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Motivational Resilience during COVID-19 across At-Risk Undergraduates Jennifer Cromley, Andrea Kunze
1432 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Analysis of a COVID-19 Clinical Trial to Emphasize Experimental Design and Quantitative Reasoning in an Introductory Biology Course † Melinda R. Grosser, Rebecca E. Hale
1433 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Negative Impacts of the Current COVID-19 Crisis on Science Education in Kenya: How Certain Can We Be About the Efficacy of the Science Learning Framework Online? † Wasonga Michael Opere
1434 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Impact of COVID-19 Curricular Shifts on Learning Gains on the Microbiology for Health Sciences Concept Inventory Heather Seitz, Andrea Rediske
1435 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Impacts of a COVID-19 E-Service-Learning Module in a Non-Major Biology Course † Sarah Adkins-Jablonsky, Ryleigh Fleming, Marco Esteban, Diana Bucio, J. Jeffrey Morris, Samiksha Raut
1436 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Bacterial Unknown Project in the COVID-19 Era: Transition from In-Person Lab Experience to Online Environment ‡ Jennifer Amrein, Zoe Dimond, Julie Reboullet, Eileen Hotze
1437 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 The Virtual Streptococcal Seminar Series and Trainee Symposium: Adaptations of a Research Community during the COVID-19 Pandemic Brady L. Spencer, Kelly S. Doran, Lindsey R. Burcham
1438 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 The Editors’ Perspectives on Adjusting STEM Education to the “New Normal” during the COVID-19 Pandemic Loretta Brancaccio-Taras, Mary V. Mawn, Josh Premo, Roshini Ramachandran
1439 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Fostering Student-Student Interactions in a First-Year Experience Course Taught Online during the COVID-19 Pandemic † Ania A. Majewska, Ethell Vereen
1440 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 COVID-360: A Collaborative Effort to Develop a Multidisciplinary Set of Online Resources for Engaging Teaching on the COVID-19 Pandemic † Victoria Del Gaizo Moore, Lisa Z. Scheifele, Joseph W. Chihade, Joseph J. Provost, Jennifer A. Roecklein-Canfield, Nikolaos Tsotakos, Michael J. Wolyniak
1441 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Pandemic-Related Instructor Talk: How New Instructors Supported Students at the Onset of the COVID-19 Pandemic † Yee Mey Seah, Ana M. Chang, Smritee Dabee, Brittney Davidge, Jami R. Erickson, Ayokunle O. Olanrewaju, Rebecca M. Price
1442 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Teaching during COVID-19 Times: A Community College Perspective † Clay Mazur, Catherine Creech, Jan Just, Cleo Rolle, Sehoya Cotner, James Hewlett
1443 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Teaching Interrupted: How COVID-19 Turned Thoughts into Practice † Megan C. Deutschman, Audrey Rose Hyson, Laura C. Seithers, Murray Jensen
1444 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Student Engagement Declines in STEM Undergraduates during COVID-19-Driven Remote Learning † Emma R. Wester, Lisa L. Walsh, Sandra Arango-Caro, Kristine L. Callis-Duehl
1445 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Undergraduate Research in the Time of COVID-19: A Remote Imaging Protocol for Physically Distanced Students Studying Wildlife † Manuela Tripepi, Tobias Landberg
1446 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Exploring the Effects on Student Learning and Engagement of COVID-19: an Innovative and Interdisciplinary Approach Bwalya Lungu, Maria Lungu
1447 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Teaching in the Time of COVID-19: Creation of a Digital Internship to Develop Scientific Thinking Skills and Create Science Literacy Exercises for Use in Remote Classrooms † Nancy Boury, Kanwal S. Alvarez, Amaya Garcia Costas, Gwendowlyn S. Knapp, Rebecca L. Seipelt-Thiemann
1448 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Disparities in Remote Learning Faced by First-Generation and Underrepresented Minority Students during COVID-19: Insights and Opportunities from a Remote Research Experience Paul H. Barber, Casey Shapiro, Molly S. Jacobs, Leslie Avilez, Katherine I. Brenner, Carmen Cabral, et al. (+15)
1449 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Instructional Communities of Practice during COVID-19: Social Networks and Their Implications for Resilience † Daniel Z. Grunspan, Emily A. Holt, Susan M. Keenan
1450 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Isn’t It Ironic? Adapting an Elective on Quarantine and Isolation for Online Delivery Due to a Pandemic † Stefanie L. Iverson-Cabral
1451 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Development of the Organonitrogen Biodegradation Database: Teaching Bioinformatics and Collaborative Skills to Undergraduates during a Pandemic † Serina L. Robinson, Troy Biernath, Caleb Rosenthal, Dean Young, Lawrence P. Wackett, Betsy M. Martinez-Vaz
1452 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Leveraging Virtual Experiences for International Professional Development Opportunities during the Pandemic and Beyond Christina N. Morra, Sarah J. Adkins-Jablonsky, Samiksha A. Raut
1453 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Development of Gamified, Interactive, Low-Cost, Flexible Virtual Microbiology Labs That Promote Higher-Order Thinking during Pandemic Instruction † Wendy A. Dustman, Sharon King-Keller, Rolando J. Marquez
1454 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Going Online in Pandemic Time: A DivulgaMicro Workshop Experience † Laura Maria Andrade de Oliveira, Eric Cordeiro-Spinetti, Felipe Piedade Gonçalves Neves, Patricia Sanae Sujii, Rachel Leite Ribeiro, Sidcley Silva de Lyra, et al. (+2)
1455 [GO] Antimicrobial Agents and Chemotherapy 2021―Apr―28 Luminore CopperTouch™ surface coating effectively inactivates SARS-CoV-2, Ebola and Marburg in vitro Emily K. Mantlo, Slobodan Paessler, Alexey Seregin, Alfred Mitchell
1456 [GO] Antimicrobial Agents and Chemotherapy 2021―Apr―28 Overcoming culture restriction for SARS-CoV-2 in human cells facilitates the screening of compounds inhibiting viral replication Santseharay Ramirez, Carlota Fernandez-Antunez, Andrea Galli, Alexander Underwood, Long V. Pham, Line A. Ryberg, et al. (+10)
1457 [GO] Journal of Virology 2021―Apr―28 Inhibitors of coronavirus 3CL proteases protect cells from protease-mediated cytotoxicity Samuel J. Resnick, Sho Iketani, Seo Jung Hong, Arie Zask, Hengrui Liu, Sungsoo Kim, et al. (+12)
1458 [GO] mSphere 2021―Apr―27 Predicting COVID-19 Severity with a Specific Nucleocapsid Antibody plus Disease Risk Factor Score Sanjana R. Sen, Emily C. Sanders, Kristin N. Gabriel, Brian M. Miller, Hariny M. Isoda, Gabriela S. Salcedo, et al. (+14)
1459 [GO] Journal of Clinical Microbiology 2021―Apr―27 SARS-CoV-2 E gene variant alters analytical sensitivity characteristics of viral detection using a commercial RT-PCR assay Stephen Tahan, Bijal A. Parikh, Lindsay Droit, Meghan A. Wallace, Carey-Ann D. Burnham, David Wang
1460 [GO] Journal of Clinical Microbiology 2021―Apr―27 SARS-Cov2 Infection Detection by Polymerase Chain Reaction and Serologic Testing in Clinical Practice Douglas Murad, Sukantha Chandrasekaran, Ajaya Pallai, Omai B. Garner, Christopher T. Denny
1461 [GO] Journal of Clinical Microbiology 2021―Apr―27 Differential Performance of CoronaCHEK SARS-CoV-2 Lateral Flow Antibody Assay by Geographic Origin of Samples Owen R. Baker, M. Kate Grabowski, Ronald M. Galiwango, Aminah Nalumansi, Jennifer Serwanga, William Clarke, et al. (+10)
1462 [GO] mBio 2021―Apr―26 Analysis of the Long-Term Impact on Cellular Immunity in COVID-19-Recovered Individuals Reveals a Profound NKT Cell Impairment Jia Liu, Xuecheng Yang, Hua Wang, Ziwei Li, Hui Deng, Jing Liu, et al. (+21)
1463 [GO] Journal of Virology 2021―Apr―26 Human nasal and lung tissues infected ex vivo with SARS-CoV-2 provide insights into differential tissue-specific and virus-specific innate immune responses in the upper and lower respiratory tract Or Alfi, Arkadi Yakirevitch, Ori Wald, Ori Wandel, Uzi Izhar, Esther Oiknine-Djian, et al. (+15)
1464 [GO] Journal of Virology 2021―Apr―26 Correlates of Neutralization Against SARS-CoV-2 Variants of Concern by Early Pandemic Sera Samuel J. Vidal, Ai-ris Y. Collier, Jingyou Yu, Katherine McMahan, Lisa H. Tostanoski, John D. Ventura, et al. (+11)
1465 [GO] mBio 2021―Apr―26 ColdZyme Maintains Integrity in SARS-CoV-2-Infected Airway Epithelia W. Posch, J. Vosper, V. Zaderer, A. Noureen, S. Constant, R. Bellmann-Weiler, et al. (+3)
1466 [GO] mSystems 2021―Apr―24 COVID-19 Pandemic in Lebanon: One Year Later, What Have We Learnt? Jad Koweyes, Tamara Salloum, Siwar Haidar, Georgi Merhi, Sima Tokajian, Suleyman Yildirim
1467 [GO] Microbiology Resource Announcements 2021―Apr―21 Report of SARS-CoV-2 B1.1.7 Lineage in Morocco Mouna Ouadghiri, Tarik Aanniz, Abdelomunim Essabbar, Myriam Seffar, Hakima Kabbaj, Ghizlane El Amin, et al. (+5)
1468 [GO] mSphere 2021―Apr―20 Single-Dilution COVID-19 Antibody Test with Qualitative and Quantitative Readouts Robert H. Bortz, Catalina Florez, Ethan Laudermilch, Ariel S. Wirchnianski, Gorka Lasso, Ryan J. Malonis, et al. (+36)
1469 [GO] mSphere 2021―Apr―20 Term Human Placental Trophoblasts Express SARS-CoV-2 Entry Factors ACE2, TMPRSS2, and Furin Yingshi Ouyang, Tarique Bagalkot, Wendy Fitzgerald, Elena Sadovsky, Tianjiao Chu, Ana Martínez-Marchal, et al. (+6)
1470 [GO] mSphere 2021―Apr―20 SARS-CoV-2 Antibody Seroprevalence in Wuhan, China, from 23 April to 24 May 2020 Huan Han, Junzhu Yi, Gongbo Cheng, Wuhui Jiang, Grzegorz M. Brożek, Yingan Jiang, et al. (+3)
1471 [GO] Journal of Virology 2021―Apr―20 SARS-CoV-2 non-structural protein 1 inhibits the interferon response by causing depletion of key host signaling factors. Anil Kumar, Ray Ishida, Tania Strilets, Jamie Cole, Joaquin Lopez-Orozco, Nawell Fayad, et al. (+8)
1472 [GO] mSystems 2021―Apr―19 Indoor Dust as a Matrix for Surveillance of COVID-19 Nicole Renninger, Nicholas Nastasi, Ashleigh Bope, Samuel J. Cochran, Sarah R. Haines, Neeraja Balasubrahmaniam, et al. (+6)
1473 [GO] mBio 2021―Apr―19 COVID-19 Severity Is Associated with Differential Antibody Fc-Mediated Innate Immune Functions Opeyemi S. Adeniji, Leila B. Giron, Mansi Purwar, Netanel F. Zilberstein, Abhijeet J. Kulkarni, Maliha W. Shaikh, et al. (+11)
1474 [GO] mBio 2021―Apr―19 Markers of Polyfunctional SARS-CoV-2 Antibodies in Convalescent Plasma Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, et al. (+17)
1475 [GO] mBio 2021―Apr―19 Infectious Clones Produce SARS-CoV-2 That Causes Severe Pulmonary Disease in Infected K18-Human ACE2 Mice Xiang Liu, Ali Zaid, Joseph R. Freitas, Nigel A. McMillan, Suresh Mahalingam, Adam Taylor, Diane E. Griffin
1476 [GO] Applied and Environmental Microbiology 2021―Apr―16 Development of wastewater pooled surveillance of SARS-CoV-2 from congregate living settings Lisa M. Colosi, Katie E. Barry, Shireen M. Kotay, Michael D. Porter, Melinda D. Poulter, Cameron Ratliff, et al. (+6)
1477 [GO] Journal of Clinical Microbiology 2021―Apr―15 Cross-reactivity of two SARS-CoV-2 serological assays in a malaria-endemic setting Laura C. Steinhardt, Fehintola Ige, Nnaemeka C. Iriemenam, Stacie M. Greby, Yohhei Hamada, Mabel Uwandu, et al. (+17)
1478 [GO] Journal of Clinical Microbiology 2021―Apr―14 Comparison of the quantitative DiaSorin Liaison antigen test to RT-PCR for the diagnosis of COVID-19 in symptomatic and asymptomatic outpatients Stefanie Lefever, Christophe Indevuyst, Lize Cuypers, Klaas Dewaele, Nicolas Yin, Frédéric Cotton, et al. (+8)
1479 [GO] Microbiology Resource Announcements 2021―Apr―14 Whole-Genome Sequence of Avian coronavirus from a 15-Year-Old Sample Confirms Evidence of GA08-like Strain Circulation 4 Years Prior to Its First Reported Outbreak Iryna V. Goraichuk, James F. Davis, Arun B. Kulkarni, Claudio L. Afonso, David L. Suarez, Jelle Matthijnssens
1480 [GO] Microbiology Resource Announcements 2021―Apr―14 Genome Sequences of Three SARS-CoV-2 ORF7a Deletion Variants Obtained from Patients in Hong Kong Herman Tse, Sally Cheuk-Ying Wong, Ka-Fai Ip, Vincent Chi-Chung Cheng, Kelvin Kai-Wang To, David Christopher Lung, et al. (+2)
1481 [GO] Microbiology Resource Announcements 2021―Apr―14 Genome Sequences of Five SARS-CoV-2 Variants from Mumbai, India, Obtained by Nanopore Sequencing Kayzad Nilgiriwala, Ayan Mandal, Grishma Patel, Tejal Mestry, Smriti Vaswani, Ambreen Shaikh, et al. (+7)
1482 [GO] Journal of Clinical Microbiology 2021―Apr―13 Impact of COVID-19 shelter-in-place order on transmission of gastrointestinal pathogens in Northern California Philip L. Bulterys, Nicole Y. Leung, Atif Saleem, Indre Budvytiene, Niaz Banaei
1483 [GO] mBio 2021―Apr―12 SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98 Amin Addetia, Nicole A. P. Lieberman, Quynh Phung, Tien-Ying Hsiang, Hong Xie, Pavitra Roychoudhury, et al. (+8)
1484 [GO] Journal of Clinical Microbiology 2021―Apr―08 A SARS-CoV-2 Label-Free Surrogate Virus Neutralization Test and a Longitudinal Study of Antibody Characteristics in COVID-19 Patients Yiqi Ruben Luo, Cassandra Yun, Indrani Chakraborty, Alan H.B. Wu, Kara L. Lynch
1485 [GO] Journal of Clinical Microbiology 2021―Apr―08 Clinical evaluation of the Abbott Alinity SARS-CoV-2 spike-specific quantitative IgG and IgM assays among infected, recovered, and vaccinated groups Madhusudhanan Narasimhan, Lenin Mahimainathan, Ellen Araj, Andrew E. Clark, John Markantonis, Allen Green, et al. (+14)
1486 [GO] Journal of Virology 2021―Apr―08 Transmission and protection against re-infection in the ferret model with the SARS-CoV-2 USA-WA1/2020 reference isolate Devanshi R. Patel, Cassandra J. Field, Kayla M. Septer, Derek G. Sim, Matthew J. Jones, Talia A. Heinly, et al. (+3)
1487 [GO] mBio 2021―Apr―05 Multidisciplinary Approaches Identify Compounds that Bind to Human ACE2 or SARS-CoV-2 Spike Protein as Candidates to Block SARS-CoV-2-ACE2 Receptor Interactions Christopher J. Day, Benjamin Bailly, Patrice Guillon, Larissa Dirr, Freda E.-C. Jen, Belinda L. Spillings, et al. (+6)
1488 [GO] Journal of Clinical Microbiology 2021―Apr―02 Development and validation of a multiplex microsphere immunoassay using dried blood spots for SARS-CoV-2 seroprevalence: application in first responders in Colorado, USA Jonathan S. Schultz, Mary K. McCarthy, Cody Rester, Katherine R. Sabourin, Kyle Annen, Melkon DomBourian, et al. (+7)
1489 [GO] Journal of Virology 2021―Apr―01 Activation of STING signaling pathway effectively blocks human coronavirus infection Wei Liu, Hanako M. Reyes, June F. Yang, Yize Li, Kathleen M. Stewart, Maria C. Basil, et al. (+5)
1490 [GO] Microbiology Resource Announcements 2021―Mar―31 Genome Sequence of a SARS-CoV-2 Strain from a COVID-19 Clinical Sample from the Khagrachari District of Bangladesh M. Imranul Hoq, Robiul Hasan Bhuiyan, M. Khondakar Raziur Rahman, Imam Hossen, Sajib Rudra, M. Arif Hossain, et al. (+5)
1491 [GO] Journal of Virology 2021―Mar―31 The physiological TMPRSS2 inhibitor HAI-2 alleviates SARS-CoV-2 infection Yuriko Tomita, Shutoku Matsuyama, Hideo Fukuhara, Katsumi Maenaka, Hiroaki Kataoka, Takao Hashiguchi, Makoto Takeda
1492 [GO] mSphere 2021―Mar―31 Stability of SARS-CoV-2 Spike G614 Variant Surpasses That of the D614 Variant after Cold Storage Sheng-Yu Huang, Yu-An Kung, Peng-Nien Huang, Sheng-Yun Chang, Yu-Nong Gong, Yi-Ju Han, et al. (+8)
1493 [GO] Microbiology Resource Announcements 2021―Mar―31 Coding-Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Gilgit, Pakistan Aneela Javed, Saifullah Khan Niazi, Eijaz Ghani, Maham Yamin, Muhammad Saqib, Hussnain A. Janjua, et al. (+2)
1494 [GO] Journal of Clinical Microbiology 2021―Mar―30 Diagnosis of SARS-CoV-2 infection with LamPORE, a high-throughput platform combining loop-mediated isothermal amplification and nanopore sequencing Leon Peto, Gillian Rodger, Daniel P Carter, Karen L Osman, Mehmet Yavuz, Katie Johnson, et al. (+16)
1495 [GO] mBio 2021―Mar―27 Dynamic Dissection of the Endocytosis of Porcine Epidemic Diarrhea Coronavirus Cooperatively Mediated by Clathrin and Caveolae as Visualized by Single-Virus Tracking Yangyang Li, Jian Wang, Wei Hou, Yanke Shan, Shouyu Wang, Fei Liu, Anne Moscona
1496 [GO] Microbiology Resource Announcements 2021―Mar―24 Genome Sequences of Three SARS-CoV-2 P.1 Strains Identified from Patients Returning from Brazil to Italy Emiliano Delli Compagni, Lucija Jurisic, Marialuigia Caporale, Federico Bacà, Silvia Scialabba, Sara Fanì, et al. (+19)
1497 [GO] Journal of Clinical Microbiology 2021―Mar―24 Evaluations of SARS-CoV-2 serological assays performance need inclusion of long-term samples Julien Favresse, Jonathan Douxfils
1498 [GO] Microbiology Resource Announcements 2021―Mar―24 Near-Complete Genome Sequence of a SARS-CoV-2 VOC 202012/01 Strain in Peru C. Padilla-Rojas, L. Barcena-Flores, K. Vega-Chozo, M. Galarza-Perez, H. Bailon-Calderon, P. Lope-Pari, et al. (+5)
1499 [GO] Journal of Microbiology and Biology Education 2021―Mar―23 Genome Analysis of SARS-CoV-2 Case Study: An Undergraduate Online Learning Activity To Introduce Bioinformatics, BLAST, and the Power of Genome Databases † J. Jordan Steel
1500 [GO] Journal of Clinical Microbiology 2021―Mar―18 Deep Learning Analysis Improves Specificity of SARS-CoV-2 Real Time PCR David J. Alouani, Roshani R.P. Rajapaksha, Mehul Jani, Daniel D. Rhoads, Navid Sadri
1501 [GO] Journal of Virology 2021―Mar―17 The furin-S2’ site in avian coronavirus plays a key role in central nervous system damage progression Jinlong Cheng, Ye Zhao, Yanxin Hu, Jing Zhao, Jia Xue, Guozhong Zhang
1502 [GO] Microbiology Resource Announcements 2021―Mar―17 First Report of a SARS-CoV-2 Genome Sequence with a Spike His69-Val70 Deletion and an Asn439Lys Mutation in Morocco Tarik Aanniz, Mouna Ouadghiri, Mohammed Amine Bendahou, Mohammed Walid Chemao-Elfihri, Mohamed Chenaoui, Hanae Dakka, et al. (+8)
1503 [GO] Journal of Virology 2021―Mar―17 Deletion of the SARS-CoV-2 Spike Cytoplasmic Tail Increases Infectivity in Pseudovirus Neutralization Assays Jingyou Yu, Zhenfeng Li, Xuan He, Makda S. Gebre, Esther A. Bondzie, Huahua Wan, et al. (+5)
1504 [GO] mBio 2021―Mar―15 Critical ACE2 Determinants of SARS-CoV-2 and Group 2B Coronavirus Infection and Replication Lily E. Adams, Kenneth H. Dinnon, Yixuan J. Hou, Timothy P. Sheahan, Mark T. Heise, Ralph S. Baric, Diane E. Griffin
1505 [GO] Journal of Virology 2021―Mar―11 Cryo-EM structure of S-Trimer, a subunit vaccine candidate for COVID-19 Jiahao Ma, Danmei Su, Yinyan Sun, Xueqin Huang, Ying Liang, Linqiang Fang, et al. (+4)
1506 [GO] Journal of Virology 2021―Mar―11 Coronavirus-Specific Antibody Cross Reactivity in Rhesus Macaques Following SARS-CoV-2 Vaccination and Infection Catherine Jacob-Dolan, Jared Feldman, Katherine McMahan, Jingyou Yu, Roland Zahn, Frank Wegmann, et al. (+3)
1507 [GO] Journal of Virology 2021―Mar―11 The PRRA insert at the S1/S2 site modulates cellular tropism of SARS-CoV-2 and ACE2 usage by the closely related Bat RaTG13 Shufeng Liu, Prabhuanand Selvaraj, Christopher Z. Lien, Ivette A. Nunez, Wells W. Wu, Chao-Kai Chou, Tony T. Wang
1508 [GO] Microbiology Resource Announcements 2021―Mar―10 Coding-Complete Genome Sequences and Mutation Profiles of Nine SARS-CoV-2 Strains Detected from COVID-19 Patients in Bangladesh Nihad Adnan, Mohib Ullah Khondoker, M. Shaminur Rahman, M. Firoz Ahmed, Shahana Sharmin, Nadim Sharif, et al. (+15)
1509 [GO] Journal of Virology 2021―Mar―10 Susceptibility of white-tailed deer (Odocoileus virginianus) to SARS-CoV-2 Mitchell V. Palmer, Mathias Martins, Shollie Falkenberg, Alexandra Buckley, Leonardo C. Caserta, Patrick K. Mitchell, et al. (+8)
1510 [GO] Journal of Virology 2021―Mar―10 SARS-CoV-2 rapidly adapts in aged BALB/c mice and induces typical pneumonia Yufei Zhang, Kun Huang, Ting Wang, Fei Deng, Wenxiao Gong, Xianfeng Hui, et al. (+13)
1511 [GO] Microbiology Resource Announcements 2021―Mar―10 Coding-Complete Genome Sequence and Phylogenetic Relatedness of a SARS-CoV-2 Strain Detected in March 2020 in Cameroon Richard Njouom, Serge Alain Sadeuh-Mba, Jules Tchatchueng, Moussa Moïse Diagne, Ndongo Dia, Paul Alain Ngoupo Tagnouokam, et al. (+10)
1512 [GO] mSphere 2021―Mar―09 Original Antigenic Sin: the Downside of Immunological Memory and Implications for COVID-19 Eric L. Brown, Heather T. Essigmann, David W. Pascual
1513 [GO] mBio 2021―Mar―08 The Principles of Antibody Therapy for Infectious Diseases with Relevance for COVID-19 Arturo Casadevall, Liise-anne Pirofski, Michael J. Joyner, Danielle A. Garsin
1514 [GO] mSystems 2021―Mar―08 High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County Smruthi Karthikeyan, Nancy Ronquillo, Pedro Belda-Ferre, Destiny Alvarado, Tara Javidi, Christopher A. Longhurst, et al. (+2)
1515 [GO] Journal of Clinical Microbiology 2021―Mar―08 Evaluation of specimen types and saliva stabilization solutions for SARS-CoV-2 testing Sara B Griesemer, Greta Van Slyke, Dylan Ehrbar, Klemen Strle, Tugba Yildirim, Dominick A Centurioni, et al. (+4)
1516 [GO] Journal of Clinical Microbiology 2021―Mar―05 Portable RT-PCR system: A Rapid and Scalable Diagnostic Tool for COVID-19 Testing Hosam M Zowawi, Thamer H Alenazi, Waleed S AlOmaim, Ahmad Wazzan, Abdullah Alsufayan, Rihab A Hasanain, et al. (+9)
1517 [GO] Journal of Virology 2021―Mar―04 Potent Neutralization of SARS-CoV-2 by Hetero-bivalent Alpaca Nanobodies Targeting the Spike Receptor-Binding Domain Huan Ma, Weihong Zeng, Xiangzhi Meng, Xiaoxue Huang, Yunru Yang, Dan Zhao, et al. (+9)
1518 [GO] Antimicrobial Agents and Chemotherapy 2021―Mar―03 Human Safety, Tolerability, and Pharmacokinetics of Molnupiravir, a Novel Broad-Spectrum Oral Antiviral Agent with Activity Against SARS-CoV-2 Wendy P. Painter, Wayne Holman, Jim A. Bush, Firas Almazedi, Hamzah Malik, Nicola C. J. E. Eraut, et al. (+3)
1519 [GO] Journal of Clinical Microbiology 2021―Mar―03 Rapid High Throughput Whole Genome Sequencing of SARS-CoV-2 by using One-step RT-PCR Amplification with Integrated Microfluidic System and Next-Gen Sequencing Tao Li, Hye Kyung Chung, Papa K. Pireku, Brett F. Beitzel, Mark A. Sanborn, Cynthia Y. Tang, et al. (+5)
1520 [GO] Antimicrobial Agents and Chemotherapy 2021―Mar―03 The anti-influenza virus drug favipiravir has little effect on replication of SARS-CoV-2 in cultured cells Yuriko Tomita, Makoto Takeda, Shutoku Matsuyama
1521 [GO] Microbiology Resource Announcements 2021―Mar―03 Identification of a SARS-CoV-2 Lineage B1.1.7 Virus in New York following Return Travel from the United Kingdom Leonardo C. Caserta, Patrick K. Mitchell, Elizabeth Plocharczyk, Diego G. Diel, John J. Dennehy
1522 [GO] Journal of Clinical Microbiology 2021―Mar―01 Evaluation of Performance of the BD Veritor SARS-CoV-2 Chromatographic Immunoassay Test in COVID-19 Symptomatic Patients Abdullah Kilic, Brian Hiestand, Elizabeth Palavecino
1523 [GO] mBio 2021―Mar―01 Genetically Engineered Live-Attenuated Middle East Respiratory Syndrome Coronavirus Viruses Confer Full Protection against Lethal Infection Javier Gutiérrez-Álvarez, José M. Honrubia, Raúl Fernández-Delgado, Li Wang, Carlos Castaño-Rodríguez, Sonia Zúñiga, et al. (+3)
1524 [GO] mBio 2021―Mar―01 Development of Spike Receptor-Binding Domain Nanoparticles as a Vaccine Candidate against SARS-CoV-2 Infection in Ferrets Young-Il Kim, Dokyun Kim, Kwang-Min Yu, Hogyu David Seo, Shin-Ae Lee, Mark Anthony B. Casel, et al. (+7)
1525 [GO] Journal of Virology 2021―Mar―01 Genomic characterization of a novel SARS-CoV-2 lineage from Rio de Janeiro, Brazil Carolina M. Voloch, Ronaldo da Silva Francisco, Luiz G. P. de Almeida, Cynthia C. Cardoso, Otavio J. Brustolini, Alexandra L. Gerber, et al. (+12)
1526 [GO] mBio 2021―Mar―01 Introduction of Two Prolines and Removal of the Polybasic Cleavage Site Lead to Higher Efficacy of a Recombinant Spike-Based SARS-CoV-2 Vaccine in the Mouse Model Fatima Amanat, Shirin Strohmeier, Raveen Rathnasinghe, Michael Schotsaert, Lynda Coughlan, Adolfo García-Sastre, et al. (+2)
1527 [GO] Journal of Virology 2021―Feb―26 SARS-CoV-2 causes severe epithelial inflammation and barrier dysfunction Stefanie Deinhardt-Emmer, Sarah Böttcher, Clio Häring, Liane Giebeler, Andreas Henke, Roland Zell, et al. (+14)
1528 [GO] Journal of Virology 2021―Feb―25 Potential differences in cleavage of the S protein and type-1 interferon together control human coronavirus infection, propagation, and neuropathology within the central nervous system Alain Le Coupanec, Marc Desforges, Benedikt Kaufer, Philippe Dubeau, Marceline Côté, Pierre J. Talbot
1529 [GO] Journal of Virology 2021―Feb―24 A comparative analysis of SARS-CoV-2 antivirals characterizes 3CLpro inhibitor PF-00835231 as a potential new treatment for COVID-19 Maren de Vries, Adil S. Mohamed, Rachel A. Prescott, Ana M. Valero-Jimenez, Ludovic Desvignes, Rebecca O’Connor, et al. (+11)
1530 [GO] Microbiology Resource Announcements 2021―Feb―24 In-Frame 12-Nucleotide Deletion within Open Reading Frame 3a in a SARS-CoV-2 Strain Isolated from a Patient Hospitalized with COVID-19 John A. Lednicky, Kartikeya Cherabuddi, Massimiliano S. Tagliamonte, Maha A. Elbadry, Kuttichantran Subramaniam, Thomas B. Waltzek, et al. (+2)
1531 [GO] Microbiology Resource Announcements 2021―Feb―24 Genome Sequence of a SARS-CoV-2 Strain from Bangladesh That Is Nearly Identical to United Kingdom SARS-CoV-2 Variant B.1.1.7 Mohammad Enayet Hossain, M. Mahfuzur Rahman, M. Shaheen Alam, Yeasir Karim, Ananya Ferdous Hoque, Sezanur Rahman, et al. (+3)
1532 [GO] mSphere 2021―Feb―23 Tuberculosis under the Influence of COVID-19 Lockdowns: Lessons from Tehran, Iran Mansour Kargarpour Kamakoli, Shima Hadifar, Sharareh Khanipour, Ghazaleh Farmanfarmaei, Abolfazl Fateh, Shayan Mostafaei, et al. (+3)
1533 [GO] mSystems 2021―Feb―23 Comparative Genomics and Integrated Network Approach Unveiled Undirected Phylogeny Patterns, Co-mutational Hot Spots, Functional Cross Talk, and Regulatory Interactions in SARS-CoV-2 Vipin Gupta, Shazia Haider, Mansi Verma, Nirjara Singhvi, Kalaisaran Ponnusamy, Md. Zubbair Malik, et al. (+8)
1534 [GO] Journal of Virology 2021―Feb―19 SARS-CoV-2 and SARS-CoV spike-mediated cell-cell fusion differ in the requirements for receptor expression and proteolytic activation Bojan F. Hörnich, Anna K. Großkopf, Sarah Schlagowski, Matthias Tenbusch, Hannah Kleine-Weber, Frank Neipel, et al. (+2)
1535 [GO] Journal of Clinical Microbiology 2021―Feb―19 Assessment of S1, S2 and NCP-specific IgM, IgA, and IgG antibody kinetics in acute SARS-CoV-2 infection by a microarray and twelve other immunoassays Georg Semmler, Marianna Theresia Traugott, Marianne Graninger, Wolfgang Hoepler, Tamara Seitz, Hasan Kelani, et al. (+9)
1536 [GO] Journal of Clinical Microbiology 2021―Feb―17 Analytical Sensitivity of the Abbott BinaxNOW COVID-19 Ag Card Garrett A. Perchetti, Meei-Li Huang, Margaret G. Mills, Keith R. Jerome, Alexander L. Greninger, Michael J. Loeffelholz
1537 [GO] mSphere 2021―Feb―16 Molecular Evolution of Human Coronavirus 229E in Hong Kong and a Fatal COVID-19 Case Involving Coinfection with a Novel Human Coronavirus 229E Genogroup Susanna K. P. Lau, David C. Lung, Emily Y. M. Wong, Kam Leng Aw-Yong, Antonio C. P. Wong, Hayes K. H. Luk, et al. (+12)
1538 [GO] mSphere 2021―Feb―16 Seroprevalence of SARS-CoV-2 Antibodies in Children and Adults in St. Louis, Missouri, USA Brittany K. Smith, Andrew B. Janowski, Jonathan E. Danis, Ian B. Harvey, Haiyan Zhao, Ya-Nan Dai, et al. (+6)
1539 [GO] Journal of Clinical Microbiology 2021―Feb―15 Copan eNAT Transport System to Address Challenges in COVID-19 Diagnostics in Regions with Limited Testing Access Melissa Richard-Greenblatt, Courtney E. Comar, Laurence Flevaud, Marina Berti, Rebecca M. Harris, Susan R. Weiss, Laurel Glaser
1540 [GO] mBio 2021―Feb―15 The Balance of Neutrophil Extracellular Trap Formation and Nuclease Degradation: an Unknown Role of Bacterial Coinfections in COVID-19 Patients? Nicole de Buhr, Maren von Köckritz-Blickwede, Scot P. Ouellette
1541 [GO] mBio 2021―Feb―15 Quantifying Absolute Neutralization Titers against SARS-CoV-2 by a Standardized Virus Neutralization Assay Allows for Cross-Cohort Comparisons of COVID-19 Sera Kasopefoluwa Y. Oguntuyo, Christian S. Stevens, Chuan Tien Hung, Satoshi Ikegame, Joshua A. Acklin, Shreyas S. Kowdle, et al. (+26)
1542 [GO] Journal of Clinical Microbiology 2021―Feb―12 Comparison of sixteen serological SARS-CoV-2 immunoassays in sixteen clinical laboratories Lene H. Harritshøj, Mikkel Gybel-Brask, Shoaib Afzal, Pia R. Kamstrup, Charlotte S. Jørgensen, Marianne Kragh Thomsen, et al. (+32)
1543 [GO] Journal of Clinical Microbiology 2021―Feb―11 Verification and Validation of SARS-CoV-2 Assay Performance on the Abbott m2000 and Alinity m Systems Julie W. Hirschhorn, April Kegl, Tanisha Dickerson, W. Bailey Glen, Gang Xu, Jay Alden, Frederick S. Nolte
1544 [GO] Microbiology Resource Announcements 2021―Feb―10 Coding-Complete Genome Sequences of NITMA1086 and NITMA1139, Two SARS-CoV-2 Isolates from Belagavi District, Karnataka State, India, Harboring the D614G Mutation Ishwar Singh, Umashankar Vetrivel, D. R. Harish, Debprasad Chattophadhyay, John J. Dennehy
1545 [GO] Journal of Virology 2021―Feb―10 The polybasic cleavage site in the SARS-CoV-2 spike modulates viral sensitivity to Type I interferon and IFITM2 Helena Winstone, Maria Jose Lista, Alisha C Reid, Clement Bouton, Suzanne Pickering, Rui Pedro Galao, et al. (+4)
1546 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 Considering personalized Interferon-β therapy for COVID-19 Karim Dorgham, Avidan U. Neumann, Maxens Decavele, Charles-Edouard Luyt, Hans Yssel, Guy Gorochov
1547 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 Plitidepsin: a repurposed drug for the treatment of COVID-19 Miguel Angel Martinez
1548 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 AT-527, a double prodrug of a guanosine nucleotide analog, is a potent inhibitor of SARS-CoV-2 in vitro and a promising oral antiviral for treatment of COVID-19 Steven S. Good, Jonna Westover, Kie Hoon Jung, Xiao-Jian Zhou, Adel Moussa, Paolo La Colla, et al. (+3)
1549 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 Reply to letter “Considering personalized Interferon-β therapy for COVID-19” Effat Davoudi-Monfared, Hossein Khalili
1550 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 Remdesivir for COVID-19: Why Not Dose Higher? Victoria C. Yan, Florian L. Muller
1551 [GO] mBio 2021―Feb―08 Characterization of SARS-CoV-2 RNA, Antibodies, and Neutralizing Capacity in Milk Produced by Women with COVID-19 Ryan M. Pace, Janet E. Williams, Kirsi M. Järvinen, Mandy B. Belfort, Christina D. W. Pace, Kimberly A. Lackey, et al. (+16)
1552 [GO] mBio 2021―Feb―08 Comorbidities in SARS-CoV-2 Patients: a Systematic Review and Meta-Analysis Wern Hann Ng, Thomas Tipih, Nigel A. Makoah, Jan-G Vermeulen, Dominique Goedhals, Joseph B. Sempa, et al. (+4)
1553 [GO] Journal of Clinical Microbiology 2021―Feb―01 Self-collected Saline Gargle Samples as an Alternative to Healthcare Worker Collected Nasopharyngeal Swabs for COVID-19 Diagnosis in Outpatients David M. Goldfarb, Peter Tilley, Ghada N. Al-Rawahi, Jocelyn A. Srigley, Geoffrey Ford, Heather Pedersen, et al. (+7)
1554 [GO] mBio 2021―Feb―01 Reply to Marakasova and Baranova, “MMR Vaccine and COVID-19: Measles Protein Homology May Contribute to Cross-Reactivity or to Complement Activation Protection” Jeffrey E. Gold, David J. Hurley, Balázs Rada, William H. Baumgartl, Larry P. Tilley, Warren E. Licht, Liise-anne Pirofski
1555 [GO] mBio 2021―Feb―01 MMR Vaccine and COVID-19: Measles Protein Homology May Contribute to Cross-Reactivity or to Complement Activation Protection Ekaterina Marakasova, Ancha Baranova, Liise-anne Pirofski
1556 [GO] Journal of Clinical Microbiology 2021―Jan―29 Performance Characteristics of BinaxNOW COVID-19 Antigen Card for Screening Asymptomatic Individuals in a University Setting Nkemakonam C Okoye, Adam P Barker, Kenneth Curtis, Richard R Orlandi, Emily A Snavely, Cameron Wright, et al. (+2)
1557 [GO] Antimicrobial Agents and Chemotherapy 2021―Jan―29 Kinetic characterization and inhibitor screening for the proteases leading to identification of drugs against SARS-CoV-2 Chih-Jung Kuo, Tai-Ling Chao, Han-Chieh Kao, Ya-Min Tsai, Yi-Kai Liu, Lily Hui-Ching Wang, et al. (+3)
1558 [GO] Journal of Virology 2021―Jan―29 SARS-CoV-2 triggers an MDA-5-dependent interferon response which is unable to control replication in lung epithelial cells Antoine Rebendenne, Ana Luiza Chaves Valadão, Marine Tauziet, Ghizlane Maarifi, Boris Bonaventure, Joe McKellar, et al. (+5)
1559 [GO] Journal of Clinical Microbiology 2021―Jan―28 Performance of Saliva, Oropharyngeal Swabs, and Nasal Swabs for SARS-CoV-2 Molecular Detection: A Systematic Review and Meta-analysis Rose A. Lee, Joshua C. Herigon, Andrea Benedetti, Nira R. Pollock, Claudia M. Denkinger
1560 [GO] Journal of Clinical Microbiology 2021―Jan―27 Pooling of Nasopharyngeal (NP) Swab Samples to Overcome Global Shortage of rRT-PCR COVID-19 Test Kits Sunil More, Sai Narayanan, Girish Patil, Parna Ghosh, Samuel Pushparaj, Emily Cooper, et al. (+4)
1561 [GO] Antimicrobial Agents and Chemotherapy 2021―Jan―27 Limited Utility of Procalcitonin in Identifying Community-Associated Bacterial Infections in Patients Presenting with Coronavirus Disease 2019 Michael May, Michelle Chang, Donald Dietz, Sherif Shoucri, Justin Laracy, Magdalena E. Sobieszczyk, et al. (+3)
1562 [GO] Microbiology Resource Announcements 2021―Jan―27 Genome Sequencing of a Novel Coronavirus SARS-CoV-2 Isolate from Iraq Nihad A. M. Al-Rashedi, Danilo Licastro, Sreejith Rajasekharan, Simeone Dal Monego, Alessandro Marcello, Murad G. Munahi, et al. (+9)
1563 [GO] Microbiology Resource Announcements 2021―Jan―27 Genome Sequences of 10 SARS-CoV-2 Viral Strains Obtained by Nanopore Sequencing of Nasopharyngeal Swabs in Malta Manuele Biazzo, Silvia Madeddu, Elfath Elnifro, Tessabella Sultana, Josie Muscat, Christian A. Scerri, et al. (+3)
1564 [GO] Journal of Clinical Microbiology 2021―Jan―27 Is the patient infected with SARS-CoV-2? Jeffrey D Klausner, Noah Kojima, Susan M. Butler-Wu
1565 [GO] Applied and Environmental Microbiology 2021―Jan―25 Time-evolution of SARS-CoV-2 in wastewater during the first pandemic wave of COVID-19 in the metropolitan area of Barcelona. Gemma Chavarria-Miró, Eduard Anfruns-Estrada, Adán Martínez-Velázquez, Mario Vázquez-Portero, Susana Guix, Miquel Paraira, et al. (+4)
1566 [GO] Journal of Clinical Microbiology 2021―Jan―22 Lessons in public (mis)communication about the laboratory from the COVID-19 pandemic Benjamin L. Mazer
1567 [GO] Journal of Clinical Microbiology 2021―Jan―22 A Scalable, Easy-to-Deploy, Protocol for Cas13-Based Detection of SARS-CoV-2 Genetic Material Jennifer N. Rauch, Eric Valois, Sabrina C. Solley, Friederike Braig, Ryan S. Lach, Morgane Audouard, et al. (+7)
1568 [GO] Journal of Virology 2021―Jan―21 The time for COVID-19 vaccination Esteban Domingo, Celia Perales
1569 [GO] Journal of Virology 2021―Jan―21 Comparison of Subgenomic and Total RNA in SARS-CoV-2 Challenged Rhesus Macaques Gabriel Dagotto, Noe B. Mercado, David R. Martinez, Yixuan J. Hou, Joseph P. Nkolola, Robert H. Carnahan, et al. (+3)
1570 [GO] Journal of Clinical Microbiology 2021―Jan―21 A novel point mutation in the N gene of SARS-CoV-2 may affect the detection of the virus by RT-qPCR Mohammad Rubayet Hasan, Sathyavathi Sundararaju, Chidambaram Manickam, Faheem Mirza, Hamad Al-Hail, Stephan Lorenz, Patrick Tang
1571 [GO] Journal of Clinical Microbiology 2021―Jan―20 Comparison of Antibody Class Specific SARS-CoV-2 Serology for the Diagnosis of Acute COVID-19 Hans Verkerke, Michael Horwath, Bejan Saeedi, Darra Boyer, Jerry W. Allen, Joshua Owens, et al. (+29)
1572 [GO] Microbiology Resource Announcements 2021―Jan―20 Expression of Concern for Sah et al., “Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal”
1573 [GO] Journal of Clinical Microbiology 2021―Jan―20 Assessment of sample pooling for clinical SARS-CoV-2 testing Sara B Griesemer, Greta Van Slyke, Kirsten St. George
1574 [GO] mSphere 2021―Jan―19 Interplay of Antibody and Cytokine Production Reveals CXCL13 as a Potential Novel Biomarker of Lethal SARS-CoV-2 Infection Alexander M. Horspool, Theodore Kieffer, Brynnan P. Russ, Megan A. DeJong, M. Allison Wolf, Jacqueline M. Karakiozis, et al. (+9)
1575 [GO] mSphere 2021―Jan―19 An Observational Laboratory-Based Assessment of SARS-CoV-2 Molecular Diagnostics in Benin, Western Africa Anna-Lena Sander, Anges Yadouleton, Andres Moreira-Soto, Carine Tchibozo, Gildas Hounkanrin, Yvette Badou, et al. (+13)
1576 [GO] Microbiology Resource Announcements 2021―Jan―19 Genomic Sequences and Analysis of Five SARS-CoV-2 Variants Obtained from Patients in Lambayeque, Peru Franklin Rómulo Aguilar-Gamboa, Luis Alberto Salcedo-Mejía, Luis Miguel Serquén-López, Marco Enrique Mechan-Llontop, Percy Omar Tullume-Vergara, Juan José Bonifacio-Briceño, et al. (+4)
1577 [GO] mBio 2021―Jan―18 Coronaviruses Associated with the Superfamily Musteloidea Alison E. Stout, Qinghua Guo, Jean K. Millet, Ricardo de Matos, Gary R. Whittaker, Vinayaka R. Prasad
1578 [GO] mBio 2021―Jan―18 Stenoparib, an Inhibitor of Cellular Poly(ADP-Ribose) Polymerase, Blocks Replication of the SARS-CoV-2 and HCoV-NL63 Human Coronaviruses In Vitro Nathan E. Stone, Sierra A. Jaramillo, Ashley N. Jones, Adam J. Vazquez, Madison Martz, Lora M. Versluis, et al. (+12)
1579 [GO] mBio 2021―Jan―18 SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia John Everett, Pascha Hokama, Aoife M. Roche, Shantan Reddy, Young Hwang, Lyanna Kessler, et al. (+13)
1580 [GO] mBio 2021―Jan―18 SARS-CoV-2 Infection Severity Is Linked to Superior Humoral Immunity against the Spike Jenna J. Guthmiller, Olivia Stovicek, Jiaolong Wang, Siriruk Changrob, Lei Li, Peter Halfmann, et al. (+20)
1581 [GO] mBio 2021―Jan―18 Engineering a Reliable and Convenient SARS-CoV-2 Replicon System for Analysis of Viral RNA Synthesis and Screening of Antiviral Inhibitors Yuewen Luo, Fei Yu, Mo Zhou, Yang Liu, Baijin Xia, Xiantao Zhang, et al. (+11)
1582 [GO] mBio 2021―Jan―18 Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants Alexander Crits-Christoph, Rose S. Kantor, Matthew R. Olm, Oscar N. Whitney, Basem Al-Shayeb, Yue Clare Lou, et al. (+14)
1583 [GO] mBio 2021―Jan―18 Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion Russell Y. Neches, Nikos C. Kyrpides, Christos A. Ouzounis, Diane E. Griffin
1584 [GO] Journal of Clinical Microbiology 2021―Jan―15 Precision pandemic preparedness-Improving diagnostics with metagenomics Kumeren N. Govender
1585 [GO] Journal of Virology 2021―Jan―14 Non-steroidal anti-inflammatory drugs dampen the cytokine and antibody response to SARS-CoV-2 infection Jennifer S. Chen, Mia Madel Alfajaro, Ryan D. Chow, Jin Wei, Renata B. Filler, Stephanie C. Eisenbarth, Craig B. Wilen
1586 [GO] Journal of Clinical Microbiology 2021―Jan―14 Correlation of SARS-CoV-2 nucleocapsid antigen and RNA concentrations in nasopharyngeal samples from children and adults using an ultrasensitive and quantitative antigen assay Nira R. Pollock, Timothy J. Savage, Hanna Wardell, Rose A. Lee, Anu Mathew, Martin Stengelin, George B. Sigal
1587 [GO] Journal of Clinical Microbiology 2021―Jan―13 Evaluation of the Xpert Xpress SARS-CoV-2/Flu/RSV assay for simultaneous detection of SARS-CoV-2, Influenza A/B and Respiratory Syncytial Viruses in nasopharyngeal specimens Eddie Chi-man Leung, Viola Chi-ying Chow, May Kin-ping Lee, Kevin Pui-san Tang, Daniel Kwok-cheung Li, Raymond Wai-man Lai
1588 [GO] Clinical Microbiology Reviews 2021―Jan―12 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2): a Systemic Infection Aleksandra Synowiec, Artur Szczepański, Emilia Barreto-Duran, Laurensius Kevin Lie, Krzysztof Pyrc
1589 [GO] Journal of Virology 2021―Jan―12 Generation and Characterization of recombinant SARS-CoV-2 expressing reporter genes Kevin Chiem, Desarey Morales Vasquez, Jun-Gyu Park, Roy Neal Platt, Tim Anderson, Mark R. Walter, et al. (+3)
1590 [GO] mBio 2021―Jan―11 Do an Altered Gut Microbiota and an Associated Leaky Gut Affect COVID-19 Severity? Heenam Stanley Kim, Maria Gloria Dominguez Bello
1591 [GO] mBio 2021―Jan―11 Pneumococcal Conjugate Vaccine Protection against Coronavirus-Associated Pneumonia Hospitalization in Children Living with and without HIV Marta C. Nunes, Clare L. Cutland, Keith P. Klugman, Shabir A. Madhi, Julian Parkhill
1592 [GO] Journal of Clinical Microbiology 2021―Jan―11 Performance characteristics of the VIDAS® SARS-COV-2 IgM and IgG serological assays Nathalie Renard, Soizic Daniel, Nadège Cayet, Matthieu Pecquet, Frédérique Raymond, Sylvie Pons, et al. (+9)
1593 [GO] Journal of Clinical Microbiology 2021―Jan―11 Performance of saliva specimens for the molecular detection of SARS-CoV-2 in the community setting: does sample collection method matter? Marta Fernández-González, Vanesa Agulló, Alba de la Rica, Ana Infante, Mar Carvajal, José Alberto García, et al. (+7)
1594 [GO] Journal of Virology 2021―Jan―07 COVID-19 vaccine candidates based on modified vaccinia virus Ankara expressing the SARS-CoV-2 spike induce robust T- and B-cell immune responses and full efficacy in mice Juan García-Arriaza, Urtzi Garaigorta, Patricia Pérez, Adrián Lázaro-Frías, Carmen Zamora, Pablo Gastaminza, et al. (+5)
1595 [GO] Microbiology Resource Announcements 2021―Jan―06 Genome Sequences of Two GH Clade SARS-CoV-2 Strains Isolated from Patients with COVID-19 in South Korea Minwoo Kim, Youn-Jung Lee, Jae Sun Yoon, Jin Young Ahn, Jung Ho Kim, Jun Yong Choi, et al. (+2)
1596 [GO] Microbiology Resource Announcements 2021―Jan―06 Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing Piroon Jenjaroenpun, Visanu Wanchai, Kikumi D. Ono-Moore, Jennifer Laudadio, Laura P. James, Sean H. Adams, et al. (+5)
1597 [GO] Microbiology Resource Announcements 2021―Jan―06 Mutation Profile of SARS-CoV-2 Genome Sequences Originating from Eight Israeli Patient Isolates Galia Zaide, Inbar Cohen-Gihon, Ofir Israeli, Dana Stein, Ohad Shifman, Shay Weiss, et al. (+5)
1598 [GO] mSphere 2021―Jan―05 Monitoring COVID-19 Transmission Risks by Quantitative Real-Time PCR Tracing of Droplets in Hospital and Living Environments Andrea Piana, Maria Eugenia Colucci, Federica Valeriani, Adriano Marcolongo, Giovanni Sotgiu, Cesira Pasquarella, et al. (+14)
1599 [GO] Journal of Clinical Microbiology 2020―Dec―24 The Importance and Challenges of Identifying SARS-CoV-2 Reinfections Ahmed Babiker, Charles Marvil, Jesse J. Waggoner, Matthew Collins, Anne Piantadosi
1600 [GO] Journal of Virology 2020―Dec―22 Coronavirus Endoribonuclease Ensures Efficient Viral Replication and Prevents Protein Kinase R Activation Jing Zhao, Lu Sun, Ye Zhao, Delan Feng, Jinlong Cheng, Guozhong Zhang
1601 [GO] Journal of Virology 2020―Dec―22 Identification of SARS-CoV-2 Nucleocapsid and Spike T-cell Epitopes for Assessing T-cell Immunity Eunok Lee, Kerrie Sandgren, Gabriel Duette, Vicki V. Stylianou, Rajiv Khanna, John-Sebastian Eden, et al. (+4)
1602 [GO] mBio 2020―Dec―21 Designing the Next Generation of Vaccines: Relevance for Future Pandemics Jorge Domínguez-Andrés, Reinout van Crevel, Maziar Divangahi, Mihai G. Netea, Vinayaka R. Prasad
1603 [GO] Journal of Clinical Microbiology 2020―Dec―15 Immunologic testing for SARS-CoV-2 infection from the antigen perspective Dandan Li, Jinming Li
1604 [GO] Journal of Virology 2020―Dec―14 Spike glycoprotein and host cell determinants of SARS-CoV-2 entry and cytopathic effects Hanh T. Nguyen, Shijian Zhang, Qian Wang, Saumya Anang, Jia Wang, Haitao Ding, et al. (+2)
1605 [GO] mBio 2020―Dec―14 Stapled Peptides Based on Human Angiotensin-Converting Enzyme 2 (ACE2) Potently Inhibit SARS-CoV-2 Infection In Vitro Francesca Curreli, Sofia M. B. Victor, Shahad Ahmed, Aleksandra Drelich, Xiaohe Tong, Chien-Te K. Tseng, et al. (+3)
1606 [GO] mBio 2020―Dec―14 Recombinant ACE2 Expression Is Required for SARS-CoV-2 To Infect Primary Human Endothelial Cells and Induce Inflammatory and Procoagulative Responses Jonas Nascimento Conde, William R. Schutt, Elena E. Gorbunova, Erich R. Mackow, John T. Patton
1607 [GO] Journal of Clinical Microbiology 2020―Dec―10 Variable sensitivity in molecular detection of SARS-CoV-2 in European Expert Laboratories: External Quality Assessment, June - July 2020 Carlo Fischer, Ramona Mögling, Angeliki Melidou, Arne Kühne, Edmilson F. Oliveira-Filho, Thorsten Wolff, et al. (+6)
1608 [GO] Journal of Clinical Microbiology 2020―Dec―10 Multi-center Evaluation of the Cepheid Xpert® Xpress SARS-CoV-2/Flu/RSV Test Heba H. Mostafa, Karen C. Carroll, Rachel Hicken, Gregory J. Berry, Ryhana Manji, Elizabeth Smith, et al. (+10)
1609 [GO] Journal of Clinical Microbiology 2020―Dec―09 A Fast and Accessible Method for the Isolation of RNA, DNA, and Protein to Facilitate the Detection of SARS-CoV-2 Jose Carlos Ponce-Rojas, Michael S. Costello, Duncan A. Proctor, Kenneth S. Kosik, Maxwell Z. Wilson, Carolina Arias, Diego Acosta-Alvear
1610 [GO] Antimicrobial Agents and Chemotherapy 2020―Dec―08 Favipiravir and the Need for Early Ambulatory Treatment of COVID-19 Tony M. Korman
1611 [GO] Antimicrobial Agents and Chemotherapy 2020―Dec―08 Evidence-Based Guidelines Should Be Used to Inform COVID-19 Management Thomas L. Holland
1612 [GO] Journal of Clinical Microbiology 2020―Dec―07 Frequency of Positive Aspergillus Tests in COVID-19 Patients in Comparison to Other Patients with Pulmonary Infections Admitted to the ICU Erlangga Yusuf, Alieke Vonk, Johannes P.C. van den Akker, Lonneke Bode, Gregorius J. Sips, Bart J. A. Rijnders, et al. (+5)
1613 [GO] Applied Microbiology 2020―Dec―05 Detection of Coronavirus 229E Antibody by Indirect Hemagglutination Harold S. Kaye, Suat Bee Ong, Walter R. Dowdle
1614 [GO] Applied Microbiology 2020―Dec―05 Detection of Coronavirus 229E Antibody by Indirect Hemagglutination Harold S. Kaye, Suat Bee Ong, Walter R. Dowdle
1615 [GO] Journal of Virology 2020―Dec―03 Identification of HLA-A*02:01-restricted candidate epitopes derived from the non-structural polyprotein 1a of SARS-CoV-2 that may be natural targets of CD8+ T cell recognition in vivo Akira Takagi, Masanori Matsui
1616 [GO] Journal of Clinical Microbiology 2020―Dec―03 Comparison of ZMAC and MARC-145 Cell Lines for Improving Porcine Reproductive and Respiratory Syndrome Virus Isolation from Clinical Samples Wannarat Yim-im, Haiyan Huang, Jie Park, Chong Wang, Gabriela Calzada, Phillip Gauger, et al. (+3)
1617 [GO] Journal of Virology 2020―Dec―02 The global and local distribution of RNA structure throughout the SARS-CoV-2 genome Rafael de Cesaris Araujo Tavares, Gandhar Mahadeshwar, Han Wan, Nicholas C. Huston, Anna Marie Pyle
1618 [GO] Journal of Clinical Microbiology 2020―Dec―02 Pooled Saliva Specimens for SARS-CoV-2 Testing Bidisha Barat, Sanchita Das, Valeria De Giorgi, David K. Henderson, Stacy Kopka, Anna F. Lau, et al. (+9)
1619 [GO] Journal of Virology 2020―Dec―01 A Versatile Reporter System to Monitor Virus Infected Cells and Its Application to Dengue Virus and SARS-CoV-2 Felix Pahmeier, Christopher J. Neufeldt, Berati Cerikan, Vibhu Prasad, Costantin Pape, Vibor Laketa, et al. (+3)
1620 [GO] mSphere 2020―Dec―01 Conserved Genomic Terminals of SARS-CoV-2 as Coevolving Functional Elements and Potential Therapeutic Targets Agnes P. Chan, Yongwook Choi, Nicholas J. Schork, Benhur Lee
1621 [GO] mSystems 2020―Dec―01 Coordinating and Assisting Research at the SARS-CoV-2/Microbiome Nexus
1622 [GO] Journal of Virology 2020―Dec―01 Vaccines That Reduce Viral Shedding Do Not Prevent Transmission of H1N1 Pandemic 2009 Swine Influenza a Virus Infection to Unvaccinated Pigs Helen E. Everett, Pauline M. van Diemen, Mario Aramouni, Andrew Ramsay, Vivien J. Coward, Vincent Pavot, et al. (+9)
1623 [GO] Journal of Clinical Microbiology 2020―Nov―26 Comparison of Quidel Sofia SARS FIA Test to Hologic Aptima SARS-CoV-2 TMA Test for Diagnosis of COVID-19 in Symptomatic Outpatients Eric T. Beck, Wendy Paar, Lara Fojut, Jordan Serwe, Renee R. Jahnke
1624 [GO] Journal of Clinical Microbiology 2020―Nov―26 Inference of Active Viral Replication in Cases with Sustained Positive RT-PCRs for SARS-CoV-2 Cristina Rodríguez-Grande, Javier Adán-Jiménez, Pilar Catalán, Luis Alcalá, Agustín Estévez, Patricia Muñoz, et al. (+2)
1625 [GO] Journal of Clinical Microbiology 2020―Nov―26 Clinical performance of the point-of-care cobas Liat for detection of SARS-CoV-2 in 20 minutes: A multicenter study Glen Hansen, Jamie Marino, Zi-Xuan Wang, Kathleen G. Beavis, John Rodrigo, Kylie Labog, et al. (+8)
1626 [GO] Journal of Clinical Microbiology 2020―Nov―26 Saliva is a Promising Alternative Specimen for the Detection of SARS-CoV-2 in Children and Adults Rebecca Yee, Thao Truong, Pia S. Pannaraj, Natalie Eubanks, Emily Gai, Jaycee Jumarang, et al. (+4)
1627 [GO] Journal of Clinical Microbiology 2020―Nov―26 Evaluating Ten Commercially-Available SARS-CoV-2 Rapid Serological Tests Using the STARD (Standards for Reporting of Diagnostic Accuracy Studies) Method. Laurent Dortet, Jean-Baptiste Ronat, Christelle Vauloup-Fellous, Céline Langendorf, David-Alexis Mendels, Cécile Emeraud, et al. (+12)
1628 [GO] Journal of Clinical Microbiology 2020―Nov―25 Detection of SARS-CoV-2 antibodies in oral fluid obtained using a rapid collection device Melanie A. MacMullan, Prithivi Chellamuthu, Aubree Mades, Sudipta Das, Fred Turner, Vladimir I. Slepnev, Albina Ibrayeva
1629 [GO] Journal of Virology 2020―Nov―24 Structure of nonstructural protein 1 from SARS-CoV-2. Lauren K. Clark, Todd J. Green, Chad M. Petit
1630 [GO] mBio 2020―Nov―23 Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients Heba H. Mostafa, John A. Fissel, Brian Fanelli, Yehudit Bergman, Victoria Gniazdowski, Manoj Dadlani, et al. (+5)
1631 [GO] mBio 2020―Nov―23 Analysis of Measles-Mumps-Rubella (MMR) Titers of Recovered COVID-19 Patients Jeffrey E. Gold, William H. Baumgartl, Ramazan A. Okyay, Warren E. Licht, Paul L. Fidel, Mairi C. Noverr, et al. (+5)
1632 [GO] Journal of Clinical Microbiology 2020―Nov―23 Performance of the COVID-19 SEROSpeed IgM/IgG Rapid Test, an immunochromatographic assay for the diagnosis of SARS-CoV-2 infection: a multicenter European study. Mario Plebani, Marijo Parčina, Issam Bechri, Gianguglielmo Zehender, Vedrana Terkeš, Balqis Abdel Hafith, et al. (+10)
1633 [GO] mBio 2020―Nov―23 After COVID-19 We Will Need a New Research System. We Need To Start Planning Now Stefano Bertuzzi, Victor J. DiRita
1634 [GO] Journal of Microbiology and Biology Education 2020―Nov―20 COVID-19 and the Central Dogma: an Activity To Improve Student Learning and Engagement † Carli Roush, Alita R. Burmeister
1635 [GO] Journal of Virology 2020―Nov―20 HTCC as a Polymeric Inhibitor of SARS-CoV-2 and MERS-CoV Aleksandra Milewska, Ying Chi, Artur Szczepanski, Emilia Barreto-Duran, Agnieszka Dabrowska, Pawel Botwina, et al. (+14)
1636 [GO] Journal of Clinical Microbiology 2020―Nov―19 Evaluation of Serological SARS-CoV-2 Lateral Flow Assays for Rapid Point of Care Testing Steven E. Conklin, Kathryn Martin, Yukari C Manabe, Haley A Schmidt, Jernelle Miller, Morgan Keruly, et al. (+16)
1637 [GO] mBio 2020―Nov―16 Defensive Properties of Mucin Glycoproteins during Respiratory Infections-Relevance for SARS-CoV-2 Maitrayee Chatterjee, Jos P. M. van Putten, Karin Strijbis, Danielle A. Garsin
1638 [GO] Journal of Clinical Microbiology 2020―Nov―13 Extraction-free methods for the detection of SARS-CoV-2 by RT-PCR: a comparison with the Cepheid Xpert Xpress SARS-CoV-2 assay across two medical centers Andrew Cameron, Nicole Pecora, Matthew Pettengill
1639 [GO] Journal of Clinical Microbiology 2020―Nov―12 Too slow, less dough for SARS-CoV-2 tests? A Micro-Comic Strip Alexander J. McAdam
1640 [GO] Journal of Virology 2020―Nov―11 Effective Inhibition of SARS-CoV-2 Entry by Heparin and Enoxaparin Derivatives Ritesh Tandon, Joshua S. Sharp, Fuming Zhang, Vitor H. Pomin, Nicole M. Ashpole, Dipanwita Mitra, et al. (+5)
1641 [GO] mSphere 2020―Nov―10 Daily Viral Kinetics and Innate and Adaptive Immune Response Assessment in COVID-19: a Case Series Pauline Vetter, Christiane S. Eberhardt, Benjamin Meyer, Paola Andrea Martinez Murillo, Giulia Torriani, Fiona Pigny, et al. (+13)
1642 [GO] mSphere 2020―Nov―10 A Genome Epidemiological Study of SARS-CoV-2 Introduction into Japan Tsuyoshi Sekizuka, Kentaro Itokawa, Masanori Hashino, Tetsuro Kawano-Sugaya, Rina Tanaka, Koji Yatsu, et al. (+20)
1643 [GO] mBio 2020―Nov―09 Erratum for Westmeier et al., “Impaired Cytotoxic CD8+ T Cell Response in Elderly COVID-19 Patients” Jaana Westmeier, Krystallenia Paniskaki, Zehra Karaköse, Tanja Werner, Kathrin Sutter, Sebastian Dolff, et al. (+14)
1644 [GO] Journal of Virology 2020―Nov―09 The SARS-CoV-2 conserved macrodomain is a mono-ADP-ribosylhydrolase Yousef M.O. Alhammad, Maithri M. Kashipathy, Anuradha Roy, Jean-Philippe Gagné, Peter McDonald, Philip Gao, et al. (+7)
1645 [GO] mBio 2020―Nov―09 Long-Term Modeling of SARS-CoV-2 Infection of In Vitro Cultured Polarized Human Airway Epithelium Siyuan Hao, Kang Ning, Cagla Aksu Kuz, Kai Vorhies, Ziying Yan, Jianming Qiu, Xiang-Jin Meng
1646 [GO] Applied and Environmental Microbiology 2020―Nov―09 Airborne disinfection by dry fogging efficiently inactivates SARS-CoV-2, mycobacteria and bacterial spores and shows the limits of commercial spore carriers for process control Jan Schinköthe, Hendrik A. Scheinemann, Sandra Diederich, Holger Freese, Michael Eschbaumer, Jens P. Teifke, Sven Reiche
1647 [GO] Antimicrobial Agents and Chemotherapy 2020―Nov―03 New Perspectives on Antimicrobial Agents: Remdesivir Treatment for COVID-19 Muneerah M. Aleissa, Emily A. Silverman, Luisa M. Paredes Acosta, Cameron T. Nutt, Aaron G. Richterman, Francisco M. Marty
1648 [GO] Journal of Clinical Microbiology 2020―Nov―03 Evaluation of the Panbio Covid-19 rapid antigen detection test device for the screening of patients with Covid-19 Florence Fenollar, Amar Bouam, Mehdi Ballouche, Léa Fuster, Elsa Prudent, Philippe Colson, et al. (+5)
1649 [GO] Journal of Virology 2020―Nov―03 Middle East Respiratory Syndrome Coronavirus Gene 5 Modulates Pathogenesis in Mice Javier Gutierrez-Alvarez, Li Wang, Raul Fernandez-Delgado, Kun Li, Paul B. McCray, Stanley Perlman, et al. (+3)
1650 [GO] Journal of Virology 2020―Nov―03 The Decision to Publish Gutierrez-Alvarez et al., “Middle East Respiratory Syndrome Coronavirus Gene 5 Modulates Pathogenesis in Mice” Mark Heise, Terence S. Dermody, Arturo Casadevall, Rozanne M Sandri-Goldin, Patrick D. Schloss
1651 [GO] Journal of Clinical Microbiology 2020―Nov―03 Comparative performance of five commercially available serologic assays to detect antibodies to SARS-CoV-2 and identify individuals with high neutralizing titers Eshan U. Patel, Evan M. Bloch, William Clarke, Yu-Hsiang Hsieh, Denali Boon, Yolanda Eby, et al. (+20)
1652 [GO] Journal of Virology 2020―Nov―03 Changes in SARS-CoV-2 Spike versus Nucleoprotein Antibody Responses Impact the Estimates of Infections in Population-Based Seroprevalence Studies Craig Fenwick, Antony Croxatto, Alix T. Coste, Florence Pojer, Cyril André, Céline Pellaton, et al. (+11)
1653 [GO] Journal of Clinical Microbiology 2020―Nov―03 Evaluation of a SARS-CoV-2 surrogate virus neutralization test for detection of antibody in human, canine, cat and hamster sera. Ranawaka A. P. M. Perera, Ronald Ko, Owen T. Y. Tsang, David S. C. Hui, Mike Y. M. Kwan, Christopher J Brackman, et al. (+13)
1654 [GO] Journal of Clinical Microbiology 2020―Nov―03 Approach to assessment of new swabs and viral transport media for SARS-CoV-2 testing Kerstin Locher, Billie Velapatino, Mélissa Caza, Lisa Li, Charlene Porter, Marthe Charles
1655 [GO] Journal of Clinical Microbiology 2020―Nov―03 A multiplex microsphere IgG assay for SARS-CoV-2 using ACE2-mediated inhibition as a surrogate for neutralization Andrew Cameron, Claire A. Porterfield, Larry D. Byron, Jiong Wang, Zachary Pearson, Jessica L. Bohrhunter, et al. (+8)
1656 [GO] mSystems 2020―Nov―02 Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients Rodolfo A. Salido, Sydney C. Morgan, Maria I. Rojas, Celestine G. Magallanes, Clarisse Marotz, Peter DeHoff, et al. (+9)
1657 [GO] mBio 2020―Nov―02 Pervasive RNA Secondary Structure in the Genomes of SARS-CoV-2 and Other Coronaviruses P. Simmonds, Diane E. Griffin
1658 [GO] Journal of Clinical Microbiology 2020―Nov―02 Highly sensitive and specific multiplex antibody assays to quantify immunoglobulins M, A and G against SARS-CoV-2 antigens Carlota Dobaño, Marta Vidal, Rebeca Santano, Alfons Jiménez, Jordi Chi, Diana Barrios, et al. (+14)
1659 [GO] mBio 2020―Nov―02 Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area S. Wesley Long, Randall J. Olsen, Paul A. Christensen, David W. Bernard, James J. Davis, Maulik Shukla, et al. (+20)
1660 [GO] Antimicrobial Agents and Chemotherapy 2020―Oct―30 Repurposing Nucleoside Analogs for Human Coronaviruses Keivan Zandi, Franck Amblard, Katie Musall, Jessica Downs-Bowen, Ruby Kleinbard, Adrian Oo, et al. (+7)
1661 [GO] Journal of Virology 2020―Oct―30 A FOUNDER EFFECT LED EARLY SARS-COV-2 TRANSMISSION IN SPAIN Francisco Díez-Fuertes, María Iglesias-Caballero, Javier García Pérez, Sara Monzón, Pilar Jiménez, Sarai Varona, et al. (+9)
1662 [GO] Antimicrobial Agents and Chemotherapy 2020―Oct―29 Development of a simple in vitro assay to identify and evaluate nucleotide analogs against SARS-CoV-2 RNA-dependent RNA polymerase Gaofei Lu, Xi Zhang, Weinan Zheng, Jialei Sun, Lan Hua, Lan Xu, et al. (+3)
1663 [GO] Journal of Virology 2020―Oct―29 Detection and Characterization of Swine-origin Influenza A(H1N1) Pandemic 2009 Viruses in Humans Following Zoonotic Transmission Peter W. Cook, Thomas Stark, Joyce Jones, Rebecca Kondor, Natosha Zanders, Jeffrey Benfer, et al. (+16)
1664 [GO] Clinical Microbiology Reviews 2020―Oct―27 SARS-CoV-2 and Health Care Worker Protection in Low-Risk Settings: a Review of Modes of Transmission and a Novel Airborne Model Involving Inhalable Particles X. Sophie Zhang, Caroline Duchaine
1665 [GO] Journal of Clinical Microbiology 2020―Oct―27 Comparison of the Clinical Performance of the Abbott Alinity IgG, Abbott Architect IgM, and Roche Elecsys Total SARS-CoV-2 Antibody Assays Kellisha Harley, Ian Gunsolus
1666 [GO] mBio 2020―Oct―26 The Interaction of Natural and Vaccine-Induced Immunity with Social Distancing Predicts the Evolution of the COVID-19 Pandemic Michael F. Good, Michael T. Hawkes, Alan Sher
1667 [GO] Journal of Clinical Microbiology 2020―Oct―23 Comparison of upper respiratory viral load distributions in asymptomatic and symptomatic children diagnosed with SARS-CoV-2 infection in pediatric hospital testing programs Larry K. Kociolek, William J. Muller, Rebecca Yee, Jennifer Dien Bard, Cameron A. Brown, Paula Revell, et al. (+18)
1668 [GO] Journal of Clinical Microbiology 2020―Oct―22 COVID-19 associated invasive aspergillosis: data from the UK National Mycology Reference Laboratory Andrew M. Borman, Michael D. Palmer, Mark Fraser, Zoe Patterson, Ciara Mann, Debra Oliver, et al. (+8)
1669 [GO] Journal of Clinical Microbiology 2020―Oct―22 Combined Self-collected Anterior Nasal and Oropharyngeal Specimens versus Provider-collected Nasopharyngeal Swabs for the Detection of SARS-CoV-2 S. M. Shakir, A. P. Barker, D. R. Hillyard, N Gilmore, J. W. Barrett, R. R. Orlandi, K. E. Hanson
1670 [GO] Microbiology Resource Announcements 2020―Oct―21 Coding-Complete Genome Sequences of 23 SARS-CoV-2 Samples from the Philippines John Mark Velasco, Piyawan Chinnawirotpisan, Khajohn Joonlasak, Wudtichai Manasatienkij, Angkana Huang, Maria Theresa Valderama, et al. (+11)
1671 [GO] mSphere 2020―Oct―20 Effectiveness of Face Masks in Preventing Airborne Transmission of SARS-CoV-2 Hiroshi Ueki, Yuri Furusawa, Kiyoko Iwatsuki-Horimoto, Masaki Imai, Hiroki Kabata, Hidekazu Nishimura, et al. (+2)
1672 [GO] Journal of Clinical Microbiology 2020―Oct―19 Metagenomic sequencing to detect respiratory viruses in persons under investigation for COVID-19 Ahmed Babiker, Heath L. Bradley, Victoria D. Stittleburg, Jessica M. Ingersoll, Autum Key, Colleen S. Kraft, et al. (+2)
1673 [GO] mBio 2020―Oct―19 Accurate Diagnosis of COVID-19 by a Novel Immunogenic Secreted SARS-CoV-2 orf8 Protein Xiaohui Wang, Joy-Yan Lam, Wan-Man Wong, Chun-Kit Yuen, Jian-Piao Cai, Shannon Wing-Ngor Au, et al. (+5)
1674 [GO] Journal of Clinical Microbiology 2020―Oct―19 COVID-19 serology at population scale: SARS-CoV-2-specific antibody responses in saliva Nora Pisanic, Pranay R. Randad, Kate Kruczynski, Yukari C. Manabe, David L. Thomas, Andrew Pekosz, et al. (+15)
1675 [GO] mBio 2020―Oct―19 Inhibition of Coronavirus Entry In Vitro and Ex Vivo by a Lipid-Conjugated Peptide Derived from the SARS-CoV-2 Spike Glycoprotein HRC Domain Victor K. Outlaw, Francesca T. Bovier, Megan C. Mears, Maria N. Cajimat, Yun Zhu, Michelle J. Lin, et al. (+11)
1676 [GO] mBio 2020―Oct―19 SARS-CoV-2 Is Restricted by Zinc Finger Antiviral Protein despite Preadaptation to the Low-CpG Environment in Humans Rayhane Nchioua, Dorota Kmiec, Janis A. Müller, Carina Conzelmann, Rüdiger Groß, Chad M. Swanson, et al. (+8)
1677 [GO] mBio 2020―Oct―19 Decline of Humoral Responses against SARS-CoV-2 Spike in Convalescent Individuals Guillaume Beaudoin-Bussières, Annemarie Laumaea, Sai Priya Anand, Jérémie Prévost, Romain Gasser, Guillaume Goyette, et al. (+15)
1678 [GO] Journal of Clinical Microbiology 2020―Oct―19 Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by RT-PCR. Manu Vanaerschot, Sabrina A. Mann, James T. Webber, Jack Kamm, Sidney M. Bell, John Bell, et al. (+21)
1679 [GO] Journal of Virology 2020―Oct―19 Country-level diversity of the HIV-1 pandemic between 1990 and 2015. Joris Hemelaar, Shanghavie Loganathan, Ramyiadarsini Elangovan, Jason Yun, Leslie Dickson-Tetteh, Shona Kirtley
1680 [GO] Journal of Virology 2020―Oct―15 The inhaled steroid ciclesonide blocks SARS-CoV-2 RNA replication by targeting the viral replication-transcription complex in cultured cells Shutoku Matsuyama, Miyuki Kawase, Naganori Nao, Kazuya Shirato, Makoto Ujike, Wataru Kamitani, et al. (+2)
1681 [GO] Journal of Clinical Microbiology 2020―Oct―14 Performance evaluation of the SAMBA II SARS-CoV-2 Test for point-of-care detection of SARS-CoV-2 Sonny M Assennato, Allyson V Ritchie, Cesar Nadala, Neha Goel, Cuijuan Tie, Lourdes M Nadala, et al. (+5)
1682 [GO] Clinical Microbiology Reviews 2020―Oct―13 Remdesivir against COVID-19 and Other Viral Diseases Jakob J. Malin, Isabelle Suárez, Vanessa Priesner, Gerd Fätkenheuer, Jan Rybniker
1683 [GO] mSphere 2020―Oct―13 Descriptive, Retrospective Study of the Clinical Characteristics of Asymptomatic COVID-19 Patients Huan Han, Zaichao Xu, Xiaoming Cheng, Youquan Zhong, Li Yuan, Fubing Wang, et al. (+6)
1684 [GO] Clinical Microbiology Reviews 2020―Oct―13 Immunopathogenesis of Coronavirus-Induced Acute Respiratory Distress Syndrome (ARDS): Potential Infection-Associated Hemophagocytic Lymphohistiocytosis Chao Quan, Caiyan Li, Han Ma, Yisha Li, Huali Zhang
1685 [GO] Journal of Clinical Microbiology 2020―Oct―13 Sensitive recovery of complete SARS-CoV-2 genomes from clinical samples using Swift Biosciences' SARS-CoV-2 multiplex amplicon sequencing panel Amin Addetia, Michelle J. Lin, Vikas Peddu, Pavitra Roychoudhury, Keith R. Jerome, Alexander L. Greninger
1686 [GO] mBio 2020―Oct―12 From People to Panthera: Natural SARS-CoV-2 Infection in Tigers and Lions at the Bronx Zoo Denise McAloose, Melissa Laverack, Leyi Wang, Mary Lea Killian, Leonardo C. Caserta, Fangfeng Yuan, et al. (+32)
1687 [GO] mBio 2020―Oct―12 Pandemic Legion History More Complex than Previously Thought Jean-Nicolas Tournier, Vinayaka R. Prasad
1688 [GO] Microbiology Resource Announcements 2020―Oct―07 Metagenomics of Wastewater Influent from Southern California Wastewater Treatment Facilities in the Era of COVID-19 Jason A. Rothman, Theresa B. Loveless, Madison L. Griffith, Joshua A. Steele, John F. Griffith, Katrine L. Whiteson, Simon Roux
1689 [GO] Microbiology Resource Announcements 2020―Oct―07 Metagenome of a Bronchoalveolar Lavage Fluid Sample from a Confirmed COVID-19 Case in Quito, Ecuador, Obtained Using Oxford Nanopore MinION Technology Sully Márquez, Belén Prado-Vivar, Juan José Guadalupe, Bernardo Gutierrez, Mónica Becerra-Wong, Manuel Jibaja, et al. (+8)
1690 [GO] Journal of Clinical Microbiology 2020―Oct―07 When Should Asymptomatic Persons Be Tested for COVID-19? Audrey N. Schuetz, Peera Hemarajata, Ninad Mehta, Sheldon Campbell, Stephanie Mitchell, Elizabeth Palavecino, et al. (+2)
1691 [GO] Journal of Clinical Microbiology 2020―Oct―07 Clinical evaluation of BD Veritor SARS-CoV-2 point-of-care test performance compared to PCR-based testing and versus the Sofia 2 SARS Antigen point-of-care test. Stephen Young, Stephanie N. Taylor, Catherine L. Cammarata, Katey G. Varnado, Celine Roger-Dalbert, Amanda Montano, et al. (+9)
1692 [GO] mSphere 2020―Oct―06 Epidemiological Investigation and Prevention Control Analysis of the Longitudinal Distribution of COVID-19 in Henan Province, China Xianguang Yang, Xuelin Chen, Cuihong Ding, Zhibo Bai, Jingyi Zhu, Gege Sun, et al. (+2)
1693 [GO] mSystems 2020―Oct―06 End-to-End Protocol for the Detection of SARS-CoV-2 from Built Environments Ceth W. Parker, Nitin Singh, Scott Tighe, Adriana Blachowicz, Jason M. Wood, Arman Seuylemezian, et al. (+12)
1694 [GO] Journal of Clinical Microbiology 2020―Oct―06 Evaluation of Three Commercial SARS-CoV-2 Serologic Assays and their Performance in Two-Test Algorithms Sarah E. Turbett, Melis Anahtar, Anand S. Dighe, Wilfredo Garcia Beltran, Tyler Miller, Hannah Scott, et al. (+8)
1695 [GO] Journal of Clinical Microbiology 2020―Oct―06 Application, Verification and Implementation of SARS-CoV-2 Serologic Assays with Emergency Use Authorization Elitza S. Theel, Marc Roger Couturier, Laura Filkins, Elizabeth Palavecino, Stephanie Mitchell, Sheldon Campbell, et al. (+6)
1696 [GO] Journal of Virology 2020―Oct―01 Single-cell RNA sequencing reveals the diversity of the immunological landscape following CNS infection by a murine coronavirus Amber R. Syage, H. Atakan Ekiz, Dominic D. Skinner, Colleen Stone, Ryan M. O'Connell, Thomas E. Lane
1697 [GO] Journal of Virology 2020―Sep―30 Interferon-induced transmembrane protein 3 is a virus-associated protein which suppresses porcine reproductive and respiratory syndrome virus replication by blocking viral membrane fusion Angke Zhang, Hong Duan, Huijun Zhao, Huancheng Liao, Yongkun Du, Liangliang Li, et al. (+6)
1698 [GO] mBio 2020―Sep―28 Antiviral Drug Discovery To Address the COVID-19 Pandemic Douglas D. Richman, Michael S. Diamond
1699 [GO] Journal of Virology 2020―Sep―28 Correction for Hu et al., “The Severe Acute Respiratory Syndrome Coronavirus Nucleocapsid Inhibits Type I Interferon Production by Interfering with TRIM25-Mediated RIG-I Ubiquitination” Yong Hu, Wei Li, Ting Gao, Yan Cui, Yanwen Jin, Ping Li, et al. (+3)
1700 [GO] mBio 2020―Sep―28 Rescue of SARS-CoV-2 from a Single Bacterial Artificial Chromosome Chengjin Ye, Kevin Chiem, Jun-Gyu Park, Fatai Oladunni, Roy Nelson Platt, Tim Anderson, et al. (+4)
1701 [GO] mBio 2020―Sep―28 S Protein-Reactive IgG and Memory B Cell Production after Human SARS-CoV-2 Infection Includes Broad Reactivity to the S2 Subunit Phuong Nguyen-Contant, A. Karim Embong, Preshetha Kanagaiah, Francisco A. Chaves, Hongmei Yang, Angela R. Branche, et al. (+4)
1702 [GO] mBio 2020―Sep―28 SARS-CoV-2 Seroprevalence among a Southern U.S. Population Indicates Limited Asymptomatic Spread under Physical Distancing Measures Amir Barzin, John L. Schmitz, Samuel Rosin, Rameet Sirpal, Martha Almond, Carole Robinette, et al. (+21)
1703 [GO] Antimicrobial Agents and Chemotherapy 2020―Sep―23 Favipiravir and the Need for Early Ambulatory Treatment of SARS-CoV2 Infection (COVID-19) Peter A. McCullough
1704 [GO] Microbiology Resource Announcements 2020―Sep―23 Whole-Genome Sequence of SARS-CoV-2 Isolate Siena-1/2020 Maria Grazia Cusi, David Pinzauti, Claudia Gandolfo, Gabriele Anichini, Gianni Pozzi, Francesco Santoro, Simon Roux
1705 [GO] Microbiology Resource Announcements 2020―Sep―23 Coding-Complete Genome Sequences of Three SARS-CoV-2 Strains from Bangladesh Shahina Akter, Tanjina Akhtar Banu, Barna Goswami, Eshrar Osman, Mohammad Samir Uzzaman, M. Ahashan Habib, et al. (+15)
1706 [GO] Journal of Virology 2020―Sep―23 Cross-Protection against MERS-CoV by Prime-Boost Vaccination Using Viral Spike DNA and Protein Jung-ah Choi, Junghyun Goo, Eunji Yang, Dae-Im Jung, Sena Lee, Semi Rho, et al. (+11)
1707 [GO] Antimicrobial Agents and Chemotherapy 2020―Sep―22 A prospective, randomized, open-label trial of early versus late favipiravir in hospitalized patients with COVID-19 Yohei Doi, Masaya Hibino, Ryota Hase, Michiko Yamamoto, Yu Kasamatsu, Masahiro Hirose, et al. (+39)
1708 [GO] mBio 2020―Sep―21 Impaired Cytotoxic CD8+ T Cell Response in Elderly COVID-19 Patients Jaana Westmeier, Krystallenia Paniskaki, Zehra Karaköse, Tanja Werner, Kathrin Sutter, Sebastian Dolff, et al. (+15)
1709 [GO] mBio 2020―Sep―21 Measles-Mumps-Rubella Vaccine and COVID-19 Relationship Öner Özdemir, Richard E. Lloyd, Michael S. Gilmore
1710 [GO] mBio 2020―Sep―21 Reply to Özdemir, “Measles-Mumps-Rubella Vaccine and COVID-19 Relationship” Paul L. Fidel, Mairi C. Noverr, Michael S. Gilmore
1711 [GO] Journal of Clinical Microbiology 2020―Sep―21 Evaluation and Comparison of the Hologic Aptima SARS-CoV-2 and the CDC 2019 nCoV real-time RT-PCR Diagnostic Panel using a Four-Sample Pooling Approach Stephanie L. Mitchell, Samantha E. Ventura
1712 [GO] mSystems 2020―Sep―21 In Silico Structure-Based Repositioning of Approved Drugs for Spike Glycoprotein S2 Domain Fusion Peptide of SARS-CoV-2: Rationale from Molecular Dynamics and Binding Free Energy Calculations Nishant Shekhar, Phulen Sarma, Manisha Prajapat, Pramod Avti, Hardeep Kaur, Anupam Raja, et al. (+7)
1713 [GO] Journal of Virology 2020―Sep―16 The enzymatic activity of the nsp14 exoribonuclease is critical for replication of MERS-CoV and SARS-CoV-2 Natacha S. Ogando, Jessika C. Zevenhoven-Dobbe, Yvonne van der Meer, Peter J. Bredenbeek, Clara C. Posthuma, Eric J. Snijder
1714 [GO] mSphere 2020―Sep―16 Competitive SARS-CoV-2 Serology Reveals Most Antibodies Targeting the Spike Receptor-Binding Domain Compete for ACE2 Binding James R. Byrnes, Xin X. Zhou, Irene Lui, Susanna K. Elledge, Jeff E. Glasgow, Shion A. Lim, et al. (+7)
1715 [GO] mSphere 2020―Sep―15 The Social Distancing Imposed To Contain COVID-19 Can Affect Our Microbiome: a Double-Edged Sword in Human Health Célia P. F. Domingues, João S. Rebelo, Francisco Dionisio, Ana Botelho, Teresa Nogueira, Susannah Green Tringe
1716 [GO] Journal of Virology 2020―Sep―14 Type I interferon susceptibility distinguishes SARS-CoV-2 from SARS-CoV. Kumari G. Lokugamage, Adam Hage, Maren de Vries, Ana M. Valero-Jimenez, Craig Schindewolf, Meike Dittmann, et al. (+2)
1717 [GO] mBio 2020―Sep―14 Antiviral Activity of Type I, II, and III Interferons Counterbalances ACE2 Inducibility and Restricts SARS-CoV-2 Idoia Busnadiego, Sonja Fernbach, Marie O. Pohl, Umut Karakus, Michael Huber, Alexandra Trkola, et al. (+3)
1718 [GO] Microbiology Resource Announcements 2020―Sep―14 Four SARS-CoV-2 Genome Sequences from Late April in Stockholm, Sweden, Reveal a Rare Mutation in the Spike Protein Tatiany Aparecida Teixeira Soratto, Hamid Darban, Annelie Bjerkner, Maarten Coorens, Jan Albert, Tobias Allander, et al. (+2)
1719 [GO] Journal of Clinical Microbiology 2020―Sep―11 Serological Assays Estimate Highly Variable SARS-CoV-2 Neutralizing Antibody Activity in Recovered COVID19 Patients Larry L. Luchsinger, Brett Ransegnola, Daniel Jin, Frauke Muecksch, Yiska Weisblum, Weili Bao, et al. (+14)
1720 [GO] Journal of Virology 2020―Sep―09 Disruption of Adaptive Immunity Enhances Disease in SARS-CoV-2 Infected Syrian Hamsters Rebecca L. Brocato, Lucia M. Principe, Robert K. Kim, Xiankun Zeng, Janice A. Williams, Yanan Liu, et al. (+8)
1721 [GO] mBio 2020―Sep―07 An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona Jason T. Ladner, Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts, et al. (+18)
1722 [GO] Journal of Clinical Microbiology 2020―Sep―04 A Direct Comparison of Enhanced Saliva to Nasopharyngeal Swab for the Detection of SARS-CoV-2 in Symptomatic Patients Gary W. Procop, Nabin K. Shrestha, Sherilynn Vogel, Kelly Van Sickle, Susan Harrington, Daniel D. Rhoads, et al. (+2)
1723 [GO] mSystems 2020―Sep―01 Low Baseline Pulmonary Levels of Cytotoxic Lymphocytes as a Predisposing Risk Factor for Severe COVID-19 Pascal H. G. Duijf, Paola Flórez de Sessions
1724 [GO] Antimicrobial Agents and Chemotherapy 2020―Sep―01 Removal of remdesivir's metabolite GS-441524 by hemodialysis in a double lung transplant recipient with COVID-19 Minh Patrick Lê, Quentin Le Hingrat, Pierre Jaquet, Paul-Henri Wicky, Vincent Bunel, Laurent Massias, et al. (+6)
1725 [GO] mSphere 2020―Sep―01 Evolution of Early SARS-CoV-2 and Cross-Coronavirus Immunity Carolin Loos, Caroline Atyeo, Stephanie Fischinger, John Burke, Matthew D. Slein, Hendrik Streeck, et al. (+5)
1726 [GO] mSphere 2020―Sep―01 A Simplified Quantitative Real-Time PCR Assay for Monitoring SARS-CoV-2 Growth in Cell Culture Christian Shema Mugisha, Hung R. Vuong, Maritza Puray-Chavez, Adam L. Bailey, Julie M. Fox, Rita E. Chen, et al. (+7)
1727 [GO] Journal of Clinical Microbiology 2020―Aug―28 SARS-CoV-2 assays to detect functional antibody responses that block ACE2 recognition in vaccinated animals and infected patients Susanne N. Walker, Neethu Chokkalingam, Emma L. Reuschel, Mansi Purwar, Ziyang Xu, Ebony N. Gary, et al. (+12)
1728 [GO] Journal of Clinical Microbiology 2020―Aug―27 High incidence of false positive results in patients with other acute infections, using the LIAISON® SARS-CoV-2 commercial chemiluminescent micro-particle immunoassay for detection of IgG anti SARS-CoV-2 antibodies. Narjis Boukli, Melchior Le Mene, Aurélie Schnuriger, Nancy Stella Cuervo, Cécilia Laroche, Laurence Morand-Joubert, Joël Gozlan
1729 [GO] Journal of Clinical Microbiology 2020―Aug―26 Can We Test Our Way Out of the COVID-19 Pandemic? Matthew A. Pettengill, Alexander J. McAdam
1730 [GO] Journal of Virology 2020―Aug―26 SARS-CoV-2 and three related coronaviruses utilize multiple ACE2 orthologs and are potently blocked by an improved ACE2-Ig Yujun Li, Haimin Wang, Xiaojuan Tang, Shisong Fang, Danting Ma, Chengzhi Du, et al. (+9)
1731 [GO] Journal of Clinical Microbiology 2020―Aug―26 Evaluation of High Throughput Serological Tests for SARS-CoV-2 Michael J. Loeffelholz
1732 [GO] mSphere 2020―Aug―26 Development and Clinical Application of a Rapid and Sensitive Loop-Mediated Isothermal Amplification Test for SARS-CoV-2 Infection Xuejiao Hu, Qianyun Deng, Junmin Li, Jierong Chen, Zixia Wang, Xiqin Zhang, et al. (+10)
1733 [GO] Journal of Virology 2020―Aug―25 Development of a fluorescence based, high-throughput SARS-CoV-2 3CLpro reporter assay Heather M. Froggatt, Brook E. Heaton, Nicholas S. Heaton
1734 [GO] Journal of Clinical Microbiology 2020―Aug―25 Inactivation analysis of SARS-CoV-2 by specimen transport media, nucleic acid extraction reagents, detergents and fixatives. Stephen R. Welch, Katherine A. Davies, Hubert Buczkowski, Nipunadi Hettiarachchi, Nicole Green, Ulrike Arnold, et al. (+11)
1735 [GO] mSphere 2020―Aug―25 Application of a Biologically Contained Reporter System To Study Gain-of-Function H5N1 Influenza A Viruses with Pandemic Potential Eva E. Spieler, Eva Moritz, Silke Stertz, Benjamin G. Hale, Seema Lakdawala
1736 [GO] Journal of Clinical Microbiology 2020―Aug―24 Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate Amin Addetia, Katharine H. D. Crawford, Adam Dingens, Haiying Zhu, Pavitra Roychoudhury, Meei-Li Huang, et al. (+3)
1737 [GO] mBio 2020―Aug―24 GRL-0920, an Indole Chloropyridinyl Ester, Completely Blocks SARS-CoV-2 Infection Shin-ichiro Hattori, Nobuyo Higshi-Kuwata, Jakka Raghavaiah, Debananda Das, Haydar Bulut, David A. Davis, et al. (+11)
1738 [GO] Antimicrobial Agents and Chemotherapy 2020―Aug―20 Antibiotic consumption and stewardship at a hospital outside of an early Coronavirus disease 2019 epicentre Deanna J. Buehrle, Brooke K. Decker, Marilyn M. Wagener, Amesh Adalja, Nina Singh, Mary C. McEllistrem, et al. (+2)
1739 [GO] Journal of Virology 2020―Aug―20 Cryo-electron microscopy structure of the SADS-CoV spike glycoprotein provides insights into an evolution of unique coronavirus spike proteins Hongxin Guan, Youwang Wang, Vanja Perčulija, Abdullah F.U.H. Saeed, Yichang Liu, Jinyu Li, et al. (+4)
1740 [GO] Journal of Virology 2020―Aug―20 Broad anti-coronaviral activity of FDA approved drugs against SARS-CoV-2 in vitro and SARS-CoV in vivo Stuart Weston, Christopher M. Coleman, Robert Haupt, James Logue, Krystal Matthews, Yize Li, et al. (+3)
1741 [GO] Journal of Clinical Microbiology 2020―Aug―19 Detection of SARS-CoV-2 IgG Targeting Nucleocapsid or Spike Protein by Four High Throughput Immunoassays Authorized for Emergency Use Harry E. Prince, Tara S. Givens, Mary Lapé-Nixon, Nigel J. Clarke, Dale A. Schwab, Hollis J. Batterman, et al. (+6)
1742 [GO] mSystems 2020―Aug―17 Oscillatory Dynamics in Infectivity and Death Rates of COVID-19 Tomáš Pavlíček, Pavel Rehak, Petr Král, Jack A. Gilbert
1743 [GO] Journal of Clinical Microbiology 2020―Aug―13 Challenges and Controversies Related to Testing for COVID-19 Matthew J. Binnicker
1744 [GO] Journal of Clinical Microbiology 2020―Aug―13 Low-Cost Polyester-Tipped 3-Dimensionally-Printed Nasopharyngeal Swab for the Diagnosis of Severe Acute Respiratory Syndrome-Related Coronavirus 2 (SARS-CoV-2) Mohammad Alghounaim, Sulaiman Almazeedi, Sarah Al Youha, Jesse Papenburg, Osama Alowaish, Ghadeer AbdulHussain, et al. (+6)
1745 [GO] Journal of Clinical Microbiology 2020―Aug―13 Self-Collected Anterior Nasal and Saliva Specimens versus Healthcare Worker-Collected Nasopharyngeal Swabs for the Molecular Detection of SARS-CoV-2 K. E. Hanson, A. P. Barker, D. R. Hillyard, N Gilmore, J. W. Barrett, R. R. Orlandi, S. M. Shakir
1746 [GO] Journal of Clinical Microbiology 2020―Aug―13 Whole genome sequencing of porcine reproductive and respiratory syndrome virus (PRRSV) from field clinical samples improves the genomic surveillance of the virus Christian Lalonde, Chantale Provost, Carl A. Gagnon
1747 [GO] mSphere 2020―Aug―12 Levels of the TNF-Related Cytokine LIGHT Increase in Hospitalized COVID-19 Patients with Cytokine Release Syndrome and ARDS David S. Perlin, Inbal Zafir-Lavie, Lori Roadcap, Shane Raines, Carl F. Ware, Garry A. Neil, Helene F. Rosenberg
1748 [GO] Journal of Virology 2020―Aug―12 Porcine Reproductive and Respiratory Syndrome Virus promotes SLA-DR-mediated antigen presentation of non-structure proteins to evoke a non-neutralizing antibody response in vivo Chunyan Wu, Bingjun Shi, Di Yang, Kun Zhang, Jie Li, Jie Wang, et al. (+4)
1749 [GO] Clinical Microbiology Reviews 2020―Aug―11 Convalescent Plasma Therapy for COVID-19: State of the Art Daniele Focosi, Arthur O. Anderson, Julian W. Tang, Marco Tuccori
1750 [GO] mBio 2020―Aug―10 The Unrecognized Threat of Secondary Bacterial Infections with COVID-19 Mylene Vaillancourt, Peter Jorth
1751 [GO] mBio 2020―Aug―10 Rethinking Gain-of-Function Experiments in the Context of the COVID-19 Pandemic Michael J. Imperiale, Arturo Casadevall
1752 [GO] Antimicrobial Agents and Chemotherapy 2020―Aug―06 Atazanavir, alone or in combination with ritonavir, inhibits SARS-CoV-2 replication and pro-inflammatory cytokine production Natalia Fintelman-Rodrigues, Carolina Q. Sacramento, Carlyle Ribeiro Lima, Franklin Souza da Silva, André C. Ferreira, Mayara Mattos, et al. (+12)
1753 [GO] Microbiology Resource Announcements 2020―Aug―05 Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology Meriem Laamarti, M. W. Chemao-Elfihri, Souad Kartti, Rokia Laamarti, Loubna Allam, Mouna Ouadghiri, et al. (+17)
1754 [GO] Journal of Clinical Microbiology 2020―Aug―04 Development and Validation of the Elecsys Anti-SARS-CoV-2 Immunoassay as a Highly Specific Tool for Determining Past Exposure to SARS-CoV-2 Peter Muench, Simon Jochum, Verena Wenderoth, Beatus Ofenloch-Haehnle, Michael Hombach, Matthias Strobl, et al. (+5)
1755 [GO] Journal of Virology 2020―Aug―04 Porcine reproductive and respiratory syndrome virus structural protein GP3 regulates claudin 4 to facilitate the early stages of infection Guofei Ding, Jiaqi Liu, Qingyuan Shao, Bin Wang, Jian Feng, Yingchao Li, et al. (+6)
1756 [GO] Journal of Clinical Microbiology 2020―Jul―30 Performance characteristics of a high throughput automated transcription mediated amplification test for SARS-CoV-2 detection Jimmykim Pham, Sarah Meyer, Catherine Nguyen, Analee Williams, Melissa Hunsicker, Ian McHardy, et al. (+17)
1757 [GO] Microbiology Resource Announcements 2020―Jul―29 Reports of Coding-Complete Genome Sequences of Five 2019 Novel Coronavirus (SARS-CoV-2) Strains Isolated in Bangladesh M. Imran Khan, Kazi Nadim Hasan, Abu Sufian, M. Bayejid Hosen, Mohammed Nafiz Imtiaz Polol, M. Abdul Khaleque, et al. (+7)
1758 [GO] Microbiology Resource Announcements 2020―Jul―29 SARS-CoV-2 Genome Sequence from Morocco, Obtained Using Ion AmpliSeq Technology Farah Jouali, Nabila Marchoudi, Fatima Zahra El Ansari, Yassine Kasmi, Mohamed Chenaoui, Aissam El Aliani, et al. (+6)
1759 [GO] Microbiology Resource Announcements 2020―Jul―29 Genome Sequences of SARS-CoV-2 Strains Detected in Hong Kong Chun Hang Au, Wai Sing Chan, Ho Yin Lam, Dona N. Ho, Simon Y. M. Lam, Jonpaul S. T. Zee, et al. (+3)
1760 [GO] mSphere 2020―Jul―28 Implementation of Antibody Rapid Diagnostic Testing versus Real-Time Reverse Transcription-PCR Sample Pooling in the Screening of COVID-19: a Case of Different Testing Strategies in Africa Tinashe K. Nyazika, Rabelani Kaela, Mathias Mugoni, Kudakwashe Musomekwa, Eric Kyei-Baafour, Simbarashe Chiwanda, et al. (+8)
1761 [GO] mBio 2020―Jul―27 Can Dietary Fatty Acids Affect the COVID-19 Infection Outcome in Vulnerable Populations? J. C. Onishi, M. M. Häggblom, S. A. Shapses, Dominique Soldati-Favre
1762 [GO] mSystems 2020―Jul―27 Comparative Genomic Analysis of Rapidly Evolving SARS-CoV-2 Reveals Mosaic Pattern of Phylogeographical Distribution Roshan Kumar, Helianthous Verma, Nirjara Singhvi, Utkarsh Sood, Vipin Gupta, Mona Singh, et al. (+12)
1763 [GO] Journal of Virology 2020―Jul―23 Evolutionary arms race between virus and host drives genetic diversity in bat SARS related coronavirus spike genes Hua Guo, Bing-Jie Hu, Xing-Lou Yang, Lei-Ping Zeng, Bei Li, Songying Ouyang, Zheng-Li Shi
1764 [GO] Journal of Virology 2020―Jul―23 Type I and Type III IFN Restrict SARS-CoV-2 Infection of Human Airway Epithelial Cultures Abigail Vanderheiden, Philipp Ralfs, Tatiana Chirkova, Amit A. Upadhyay, Matthew G. Zimmerman, Shamika Bedoya, et al. (+15)
1765 [GO] Journal of Clinical Microbiology 2020―Jul―22 The COVID-19 Diagnostic Dilemma: a Clinician's Perspective Ralph Rogers, Thomas O’Brien, Jad Aridi, Curt G. Beckwith, Alexander J. McAdam
1766 [GO] Journal of Clinical Microbiology 2020―Jul―22 What Is Needed for the Response to COVID-19? A Micro-Comic Strip Alexander J. McAdam, Carey-Ann D. Burnham
1767 [GO] Journal of Clinical Microbiology 2020―Jul―22 Special Issue on Diagnostic Testing for Severe Acute Respiratory Syndrome Coronavirus 2 and Lessons from This Pandemic Alexander J. McAdam, Angela M. Caliendo
1768 [GO] Journal of Clinical Microbiology 2020―Jul―22 Correction for Khan et al., “Emergence of a Novel Coronavirus, Severe Acute Respiratory Syndrome Coronavirus 2: Biology and Therapeutic Options” Suliman Khan, Rabeea Siddique, Muhammad Adnan Shereen, Ashaq Ali, Jianbo Liu, Qian Bai, et al. (+2)
1769 [GO] Journal of Clinical Microbiology 2020―Jul―22 The First Quarter of SARS-CoV-2 Testing: the University of Washington Medicine Experience Alexander L. Greninger, Keith R. Jerome, Alexander J. McAdam
1770 [GO] Journal of Clinical Microbiology 2020―Jul―22 My Experience with SARS-CoV-2, with a Focus on Testing Peggy A. Cotter, Alexander J. McAdam
1771 [GO] mSystems 2020―Jul―21 COVID-19 and the Gut Microbiome: More than a Gut Feeling Daniel van der Lelie, Safiyh Taghavi, Ileana M. Cristea
1772 [GO] Journal of Clinical Microbiology 2020―Jul―21 A recurrent mutation at position 26,340 of SARS-CoV-2 is associated with failure of the E-gene qRT-PCR utilized in a commercial dual-target diagnostic assay Maria Artesi, Sébastien Bontems, Paul Göbbels, Marc Franckh, Piet Maes, Raphaël Boreux, et al. (+5)
1773 [GO] mSystems 2020―Jul―21 SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases Fuqing Wu, Jianbo Zhang, Amy Xiao, Xiaoqiong Gu, Wei Lin Lee, Federica Armas, et al. (+14)
1774 [GO] mBio 2020―Jul―20 Discovery and Genomic Characterization of a 382-Nucleotide Deletion in ORF7b and ORF8 during the Early Evolution of SARS-CoV-2 Yvonne C. F. Su, Danielle E. Anderson, Barnaby E. Young, Martin Linster, Feng Zhu, Jayanthi Jayakumar, et al. (+20)
1775 [GO] Journal of Virology 2020―Jul―17 Immune escape adaptive mutations in the H7N9 avian influenza hemagglutinin protein increase virus replication fitness and decrease pandemic potential Pengxiang Chang, Joshua E. Sealy, Jean-Remy Sadeyen, Sushant Bhat, Deimante Lukosaityte, Yipeng Sun, Munir Iqbal
1776 [GO] Antimicrobial Agents and Chemotherapy 2020―Jul―16 Discovery of M Protease inhibitors encoded by SARS-CoV-2 Hui-Chen Hung, Yi-Yu Ke, Sheng Yu Huang, Peng-Nien Huang, Yu-An Kung, Teng-Yuan Chang, et al. (+13)
1777 [GO] mSphere 2020―Jul―15 Clinical Characteristics and Immune Injury Mechanisms in 71 Patients with COVID-19 Yingjie Wu, Xiaoxing Huang, Jiaxing Sun, Tian Xie, Yufei Lei, Jamal Muhammad, et al. (+7)
1778 [GO] Journal of Clinical Microbiology 2020―Jul―15 Evaluation of six commercial mid to high volume antibody and six point of care lateral flow assays for detection of SARS-CoV-2 antibodies Carmen L. Charlton, Jamil N. Kanji, Kam Johal, Ashley Bailey, Sabrina S. Plitt, Clayton MacDonald, et al. (+10)
1779 [GO] Journal of Clinical Microbiology 2020―Jul―15 Comparison of Extraction Methods and Thermocyclers for SARS-CoV-2 Molecular Detection using Clinical Specimens Eric M. Ransom, Robert F. Potter, Meghan A. Wallace, Kaitlin F. Mitchell, Melanie L. Yarbrough, Carey-Ann D. Burnham, et al. (+2)
1780 [GO] Journal of Virology 2020―Jul―15 Erratum for Burkard et al., “Pigs Lacking the Scavenger Receptor Cysteine-Rich Domain 5 of CD163 Are Resistant to Porcine Reproductive and Respiratory Syndrome Virus 1 Infection” Christine Burkard, Tanja Opriessnig, Alan J. Mileham, Tomasz Stadejek, Tahar Ait-Ali, Simon G. Lillico, et al. (+2)
1781 [GO] Antimicrobial Agents and Chemotherapy 2020―Jul―14 Efficacy and safety of interferon β-1a in treatment of severe COVID-19: A randomized clinical trial Effat Davoudi-Monfared, Hamid Rahmani, Hossein Khalili, Mahboubeh Hajiabdolbaghi, Mohamadreza Salehi, Ladan Abbasian, et al. (+2)
1782 [GO] Journal of Virology 2020―Jul―14 A Novel Mucosal Adjuvant System for the Immunization Against Avian Coronavirus Causing Infectious Bronchitis. Shaswath S. Chandrasekar, Brock A. Kingstad-Bakke, Chia-Wei Wu, M. Suresh, Adel M. Talaat
1783 [GO] Journal of Virology 2020―Jul―14 Metabolic Syndrome and Viral Pathogenesis: Lessons from Influenza and Coronaviruses Maria Smith, Rebekah Honce, Stacey Schultz-Cherry
1784 [GO] mSystems 2020―Jul―13 Oscillations in U.S. COVID-19 Incidence and Mortality Data Reflect Diagnostic and Reporting Factors Aviv Bergman, Yehonatan Sella, Peter Agre, Arturo Casadevall, John F. Rawls
1785 [GO] Journal of Virology 2020―Jul―13 Broad and differential animal ACE2 receptor usage by SARS-CoV-2 Xuesen Zhao, Danying Chen, Robert Szabla, Mei Zheng, Guoli Li, Pengcheng Du, et al. (+8)
1786 [GO] Journal of Clinical Microbiology 2020―Jul―13 Direct Comparison of SARS-CoV-2 Analytical Limits of Detection across Seven Molecular Assays Becky Fung, Allan Gopez, Venice Servellita, Shaun Arevalo, Coral Ho, Anne Deucher, et al. (+3)
1787 [GO] Journal of Virology 2020―Jul―13 The SARS-CoV-2 N protein is a good component in a vaccine Gustaf Ahlén, Lars Frelin, Negin Nekoyan, Friedemann Weber, Urban Höglund, Olivia Larsson, et al. (+7)
1788 [GO] Antimicrobial Agents and Chemotherapy 2020―Jul―09 Effect of Systemic Inflammatory Response to SARS-CoV-2 on Lopinavir and Hydroxychloroquine Plasma Concentrations Catia Marzolini, Felix Stader, Marcel Stoeckle, Fabian Franzeck, Adrian Egli, Stefano Bassetti, et al. (+12)
1789 [GO] Journal of Clinical Microbiology 2020―Jul―09 Under Allocation: Critical Supply Chain Hurdles Negatively Impact the Ability of Community Hospitals to Perform Repeat SARS-CoV-2 Testing Susan M. Butler-Wu, Noah Wald-Dickler, Paul Holtom, Kenneth M. Zangwill, Tam T. Van
1790 [GO] Journal of Virology 2020―Jul―09 Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico Blanca Taboada, Joel Armando Vazquez-Perez, José Esteban Muñoz Medina, Pilar Ramos Cervantes, Marina Escalera-Zamudio, Celia Boukadida, et al. (+25)
1791 [GO] Journal of Clinical Microbiology 2020―Jul―08 Clinical evaluation of self-collected saliva by RT-qPCR, direct RT-qPCR, RT-LAMP, and a rapid antigen test to diagnose COVID-19 Mayu Nagura-Ikeda, Kazuo Imai, Sakiko Tabata, Kazuyasu Miyoshi, Nami Murahara, Tsukasa Mizuno, et al. (+8)
1792 [GO] Microbiology Resource Announcements 2020―Jul―08 Coding-Complete Genome Sequences of Two SARS-CoV-2 Isolates from Early Manifestations of COVID-19 in Israel Inbar Cohen-Gihon, Ofir Israeli, Ohad Shifman, Dana Stein, Hagit Achdout, Shay Weiss, et al. (+9)
1793 [GO] Journal of Virology 2020―Jul―08 LY6E Restricts the Entry of Human Coronaviruses, Including the Currently Pandemic SARS-CoV-2 Xuesen Zhao, Shuangli Zheng, Danying Chen, Mei Zheng, Xinglin Li, Guoli Li, et al. (+4)
1794 [GO] Microbiology Resource Announcements 2020―Jul―08 Coding-Complete Genome Sequence of SARS-CoV-2 Isolate from Bangladesh by Sanger Sequencing M. Moniruzzaman, Mohammad Uzzal Hossain, M. Nazrul Islam, M. Hadisur Rahman, Irfan Ahmed, Tahia Anan Rahman, et al. (+7)
1795 [GO] mSphere 2020―Jul―07 Nipah@20: Lessons Learned from Another Virus with Pandemic Potential Raúl Gómez Román, Lin-Fa Wang, Benhur Lee, Kim Halpin, Emmie de Wit, Christopher C. Broder, et al. (+4)
1796 [GO] mBio 2020―Jul―06 Pathogenesis of COVID-19 from the Perspective of the Damage-Response Framework Liise-anne Pirofski, Arturo Casadevall, Thomas E. Morrison, Danielle A. Garsin
1797 [GO] Antimicrobial Agents and Chemotherapy 2020―Jul―03 Clinical trials of repurposed antivirals for SARS-CoV-2 Miguel Angel Martinez
1798 [GO] Journal of Clinical Microbiology 2020―Jul―02 Utility of Stool PCR for the Diagnosis of COVID-19: Comparison of Two Commercial Platforms Wendy A. Szymczak, D. Yitzchak Goldstein, Erika P. Orner, Roger A. Fecher, Raquel T. Yokoda, Karin A. Skalina, et al. (+3)
1799 [GO] Microbiology Resource Announcements 2020―Jul―01 Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Morocco Sanaâ Lemriss, Amal Souiri, Narjis Amar, Nabil Lemzaoui, Omar Mestoui, Mohamed Labioui, et al. (+9)
1800 [GO] Microbiology Resource Announcements 2020―Jul―01 Genome Sequencing of a Severe Acute Respiratory Syndrome Coronavirus 2 Isolate Obtained from a South African Patient with Coronavirus Disease 2019 Mushal Allam, Arshad Ismail, Zamantungwa T. H. Khumalo, Stanford Kwenda, Peter van Heusden, Ruben Cloete, et al. (+11)
1801 [GO] mSphere 2020―Jun―30 Increasing Temperature and Relative Humidity Accelerates Inactivation of SARS-CoV-2 on Surfaces Jennifer Biryukov, Jeremy A. Boydston, Rebecca A. Dunning, John J. Yeager, Stewart Wood, Amy L. Reese, et al. (+18)
1802 [GO] Applied and Environmental Microbiology 2020―Jun―29 Persistence of Bacteriophage Phi 6 on Porous and Non-Porous Surfaces; Potential for use as Ebola or Coronavirus Surrogate Carrie Whitworth, Yi Mu, Hollis Houston, Marla Martinez-Smith, Judith Noble-Wang, Angela Coulliette-Salmond, Laura Rose
1803 [GO] Journal of Virology 2020―Jun―29 SARS-CoV-2 vaccines: ‘Warp Speed’ needs mind melds not warped minds John P. Moore, P. J. Klasse
1804 [GO] Journal of Clinical Microbiology 2020―Jun―24 Clinical And Analytical Performance Of An Automated Serological Test That Identifies S1/S2 Neutralizing IgG In COVID-19 Patients Semiquantitatively. Fabrizio Bonelli, Antonella Sarasini, Claudia Zierold, Mariella Calleri, Alice Bonetti, Chiara Vismara, et al. (+8)
1805 [GO] Microbiology Resource Announcements 2020―Jun―24 Genome Sequence of SARS-CoV-2 Isolate Cali-01, from Colombia, Obtained Using Oxford Nanopore MinION Sequencing Diana Lopez-Alvarez, Beatriz Parra, Wilmer J. Cuellar, John J. Dennehy
1806 [GO] mSphere 2020―Jun―23 COVID-19 Hyperinflammation: What about Neutrophils? Athanasios Didangelos, Helene F. Rosenberg
1807 [GO] mSphere 2020―Jun―23 Asymptomatic COVID-19 Patients Can Contaminate Their Surroundings: an Environment Sampling Study Li Wei, Ji Lin, Xiaofei Duan, Wenzhi Huang, Xiaojun Lu, Juan Zhou, et al. (+2)
1808 [GO] Clinical Microbiology Reviews 2020―Jun―23 Coronavirus Disease 2019-COVID-19 Kuldeep Dhama, Sharun Khan, Ruchi Tiwari, Shubhankar Sircar, Sudipta Bhat, Yashpal Singh Malik, et al. (+4)
1809 [GO] mSphere 2020―Jun―23 Rampant C→U Hypermutation in the Genomes of SARS-CoV-2 and Other Coronaviruses: Causes and Consequences for Their Short- and Long-Term Evolutionary Trajectories P. Simmonds, Martin Schwemmle
1810 [GO] Journal of Virology 2020―Jun―23 Identification of common deletions in the spike protein of SARS-CoV-2 Zhe Liu, Huanying Zheng, Huifang Lin, Mingyue Li, Runyu Yuan, Jingju Peng, et al. (+15)
1811 [GO] Journal of Clinical Microbiology 2020―Jun―23 Analytical and Clinical Comparison of Three Nucleic Acid Amplification Tests for SARS-CoV-2 Detection Elizabeth Smith, Wei Zhen, Ryhana Manji, Deborah Schron, Scott Duong, Gregory J. Berry
1812 [GO] Antimicrobial Agents and Chemotherapy 2020―Jun―23 IMPACT OF GLUCOCORTICOID TREATMENT IN SARS-COV-2 INFECTION MORTALITY: A RETROSPECTIVE CONTROLLED COHORT STUDY Ana Fernández Cruz, Belén Ruiz-Antorán, Ana Muñoz Gómez, Aránzazu Sancho López, Patricia Mills Sánchez, Gustavo Adolfo Centeno Soto, et al. (+13)
1813 [GO] mBio 2020―Jun―22 Could an Unrelated Live Attenuated Vaccine Serve as a Preventive Measure To Dampen Septic Inflammation Associated with COVID-19 Infection? Paul L. Fidel, Mairi C. Noverr, Michael S. Gilmore
1814 [GO] mSystems 2020―Jun―22 Reply to McDonald, “Protections against the Risk of Airborne SARS-CoV-2 Infection” Leslie Dietz, Patrick F. Horve, David A. Coil, Mark Fretz, Jonathan A. Eisen, Kevin Van Den Wymelenberg
1815 [GO] mSystems 2020―Jun―19 Protections against the Risk of Airborne SARS-CoV-2 Infection Clement J. McDonald, Jack A. Gilbert
1816 [GO] Journal of Virology 2020―Jun―17 Inactivating Three Interferon Antagonists Attenuates Pathogenesis of an Enteric Coronavirus Xufang Deng, Alexandra C. Buckley, Angela Pillatzki, Kelly M. Lager, Kay S. Faaberg, Susan C. Baker
1817 [GO] Journal of Virology 2020―Jun―15 The Nucleocapsid Protein of SARS-CoV-2: a Target for Vaccine Development Noton K. Dutta, Kaushiki Mazumdar, James T. Gordy, Rebecca Ellis Dutch
1818 [GO] Journal of Clinical Microbiology 2020―Jun―11 Comparative pathogenesis of bovine and porcine respiratory coronaviruses in the animal host species and SARS-CoV-2 in humans Linda J. Saif, Kwonil Jung
1819 [GO] Journal of Virology 2020―Jun―11 Porcine Reproductive and Respiratory Syndrome Virus Utilizes Viral Apoptotic Mimicry as an Alternative Pathway to Infect Host Cells Xin Wei, Rui Li, Songlin Qiao, Xin-xin Chen, Guangxu Xing, Gaiping Zhang
1820 [GO] Journal of Clinical Microbiology 2020―Jun―10 Culture-based virus isolation to evaluate potential infectivity of clinical specimens tested for COVID-19 Chung-Guei Huang, Kuo-Ming Lee, Mei-Jen Hsiao, Shu-Li Yang, Peng-Nien Huang, Yu-Nong Gong, et al. (+6)
1821 [GO] Journal of Clinical Microbiology 2020―Jun―10 Evaluation of COVID-19 IgG/IgM Rapid Test from Orient Gene Biotech Sarah Dellière, Maud Salmona, Marine Minier, Audrey Gabassi, Alexandre Alanio, Jérôme Le Goff, et al. (+2)
1822 [GO] Microbiology Resource Announcements 2020―Jun―10 Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh Senjuti Saha, Roly Malaker, Mohammad Saiful Islam Sajib, Md Hasanuzzaman, Hafizur Rahman, Zabed B. Ahmed, et al. (+13)
1823 [GO] Journal of Clinical Microbiology 2020―Jun―09 A Public Health Laboratory Response to the COVID-19 Pandemic Kanti Pabbaraju, Anita A. Wong, Mark Douesnard, Raymond Ma, Kara Gill, Paul Dieu, et al. (+3)
1824 [GO] Journal of Clinical Microbiology 2020―Jun―09 Performance Characteristics of Four High-Throughput Immunoassays for Detection of IgG Antibodies against SARS-CoV-2 Elitza S. Theel, Julie Harring, Heather Hilgart, Dane Granger
1825 [GO] Journal of Clinical Microbiology 2020―Jun―09 Clinical Performance of SARS-CoV-2 Molecular Testing Daniel A. Green, Jason Zucker, Lars F. Westblade, Susan Whittier, Hanna Rennert, Priya Velu, et al. (+6)
1826 [GO] Antimicrobial Agents and Chemotherapy 2020―Jun―08 The good, the bad & the hoax: when publication instantaneously impacts treatment strategies for COVID-19 François Danion, Yvon Ruch, Marion Fourtage, Charlotte Kaeuffer, Valentin Greigert, Nicolas Lefebvre, et al. (+3)
1827 [GO] Journal of Clinical Microbiology 2020―Jun―08 Multi-Center Evaluation of the Cepheid Xpert Xpress SARS-CoV-2 Assay for the Detection of SARS-CoV-2 in Oropharyngeal Swab Specimens Hongyan Hou, Jun Chen, Yueqin Wang, Yanjun Lu, Yaowu Zhu, Bo Zhang, et al. (+6)
1828 [GO] Antimicrobial Agents and Chemotherapy 2020―Jun―08 Suramin inhibits SARS-CoV-2 infection in cell culture by interfering with early steps of the replication cycle Clarisse Salgado Benvindo da Silva, Melissa Thaler, Ali Tas, Natacha S. Ogando, Peter J. Bredenbeek, Dennis K. Ninaber, et al. (+4)
1829 [GO] Journal of Clinical Microbiology 2020―Jun―04 Pre-Procedural Surveillance Testing for SARS-CoV-2 in an Asymptomatic Population in the Seattle Region Shows Low Rates of Positivity James A Mays, Alexander L Greninger, Keith R Jerome, John B Lynch, Patrick C Mathias
1830 [GO] Journal of Clinical Microbiology 2020―Jun―03 Clinical performance of the Luminex NxTAG CoV Extended Panel for SARS-CoV-2 detection in nasopharyngeal specimens of COVID-19 patients in Hong Kong Jonathan Hon-Kwan Chen, Cyril Chik-Yan Yip, Jasper Fuk-Woo Chan, Rosana Wing-Shan Poon, Kelvin Kai-Wang To, Kwok-Hung Chan, et al. (+2)
1831 [GO] Microbiology Resource Announcements 2020―Jun―03 Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Northern Germany Susanne Pfefferle, Jiabin Huang, Dominik Nörz, Daniela Indenbirken, Marc Lütgehetmann, Lisa Oestereich, et al. (+5)
1832 [GO] mBio 2020―Jun―01 Pandemic COVID-19 Joins History’s Pandemic Legion David M. Morens, Peter Daszak, Howard Markel, Jeffery K. Taubenberger, Benhur Lee, Vinayaka R. Prasad
1833 [GO] Journal of Clinical Microbiology 2020―Jun―01 Performance of Abbott ID NOW COVID-19 rapid nucleic acid amplification test in nasopharyngeal swabs transported in viral media and dry nasal swabs, in a New York City academic institution Atreyee Basu, Tatyana Zinger, Kenneth Inglima, Kar-mun Woo, Onome Atie, Lauren Yurasits, et al. (+2)
1834 [GO] mBio 2020―Jun―01 Novel Immunoglobulin Domain Proteins Provide Insights into Evolution and Pathogenesis of SARS-CoV-2-Related Viruses Yongjun Tan, Theresa Schneider, Matthew Leong, L. Aravind, Dapeng Zhang, Igor B. Zhulin
1835 [GO] Journal of Clinical Microbiology 2020―May―29 Influence of Different Inactivation Methods on Severe Acute Respiratory Syndrome Coronavirus 2 RNA Copy Number Hailong Chen, Rui Wu, Yuan Xing, Quanli Du, Zerun Xue, Yanli Xi, et al. (+19)
1836 [GO] Journal of Clinical Microbiology 2020―May―28 Patients with Common Cold Coronaviruses Tested Negative for IgG Antibody to SARS-CoV-2 Stephen M. Brecher, Jonathan Dryjowicz-Burek, Hongbo Yu, Sheldon Campbell, Nora Ratcliffe, Kalpana Gupta
1837 [GO] Journal of Clinical Microbiology 2020―May―28 Comparison of two commercial molecular tests and a laboratory-developed modification of the CDC 2019-nCoV RT-PCR assay for the detection of SARS-CoV-2 Nicholas M. Moore, Haiying Li, Debra Schejbal, Jennifer Lindsley, Mary K. Hayden
1838 [GO] Journal of Clinical Microbiology 2020―May―28 Comparison of the Accula SARS-CoV-2 Test with a Laboratory-Developed Assay for Detection of SARS-CoV-2 RNA in Clinical Nasopharyngeal Specimens Catherine A. Hogan, Natasha Garamani, Andrew S. Lee, Jack K. Tung, Malaya K. Sahoo, ChunHong Huang, et al. (+3)
1839 [GO] Journal of Clinical Microbiology 2020―May―27 Test Agreement Between Roche Cobas 6800 and Cepheid GeneXpert Xpress SARS-CoV-2 Assays at High Cycle Threshold Ranges Kari Broder, Ahmed Babiker, Charles Myers, Terri White, Heather Jones, John Cardella, et al. (+3)
1840 [GO] Microbiology Resource Announcements 2020―May―27 Complete Genome Sequence of SARS-CoV-2 in a Tiger from a U.S. Zoological Collection Leyi Wang, Patrick K. Mitchell, Paul P. Calle, Susan L. Bartlett, Denise McAloose, Mary Lea Killian, et al. (+11)
1841 [GO] Microbiology Resource Announcements 2020―May―27 Coding-Complete Genome Sequences of Two SARS-CoV-2 Isolates from Egypt Ahmed Kandeil, Ahmed Mostafa, Rabeh El-Shesheny, Mahmoud Shehata, Wael H. Roshdy, Shymaa Showky Ahmed, et al. (+13)
1842 [GO] mBio 2020―May―25 COVID-19 Interference with Renin-Angiotensin System in the Context of Heart Failure Eftychios Siniorakis, Spyridon Arvanitakis, Ioannis Nikolopoulos, Maximilianos Elkouris, Arturo Casadevall
1843 [GO] Journal of Clinical Microbiology 2020―May―25 The Clinical Microbiology Laboratory Response to COVID-19: a Micro-Comic Strip Alexander J. McAdam, Carey-Ann D. Burnham
1844 [GO] mBio 2020―May―25 Antiviral Efficacies of FDA-Approved Drugs against SARS-CoV-2 Infection in Ferrets Su-Jin Park, Kwang-Min Yu, Young-Il Kim, Se-Mi Kim, Eun-Ha Kim, Seong-Gyu Kim, et al. (+14)
1845 [GO] Journal of Virology 2020―May―25 Structural Characterization of the Helicase Nsp10 Encoded by Porcine Reproductive and Respiratory Syndrome Virus Yuejun Shi, Xiaohan Tong, Gang Ye, Ruixue Xiu, Lisha Li, Limeng Sun, et al. (+8)
1846 [GO] Journal of Virology 2020―May―21 Replication of SARS-CoV-2 in human respiratory epithelium Aleksandra Milewska, Anna Kula-Pacurar, Jakub Wadas, Agnieszka Suder, Artur Szczepanski, Agnieszka Dabrowska, et al. (+9)
1847 [GO] Journal of Virology 2020―May―19 Increased Pathogenicity and Virulence of Virus in Middle East Respiratory Syndrome Coronavirus Clade B in Vitro and in Vivo Yanqun Wang, Jing Sun, Xiaobo Li, Airu Zhu, Wenda Guan, De-Qiang Sun, et al. (+19)
1848 [GO] Journal of Clinical Microbiology 2020―May―18 Saliva as an Alternate Specimen Source for Detection of SARS-CoV-2 in Symptomatic Patients Using Cepheid Xpert Xpress SARS-CoV-2 Clare McCormick-Baw, Kristi Morgan, Donna Gaffney, Yareli Cazares, Karen Jaworski, Adrienne Byrd, et al. (+2)
1849 [GO] Journal of Clinical Microbiology 2020―May―18 Stability of SARS-CoV-2 in PBS for Molecular Detection Garrett A. Perchetti, Meei-Li Huang, Vikas Peddu, Keith R. Jerome, Alexander L. Greninger
1850 [GO] Journal of Clinical Microbiology 2020―May―14 Large-scale, in-house production of viral transport media to support SARS-CoV-2 PCR testing in a multi-hospital healthcare network during the COVID-19 pandemic Kenneth P. Smith, Annie Cheng, Amber Chopelas, Sarah DuBois-Coyne, Ikram Mezghani, Shade Rodriguez, et al. (+2)
1851 [GO] Journal of Clinical Microbiology 2020―May―14 Bacteremia and Blood Culture Utilization During COVID-19 Surge in New York City Jorge Sepulveda, Lars F. Westblade, Susan Whittier, Michael J. Satlin, William G. Greendyke, Justin G. Aaron, et al. (+8)
1852 [GO] Antimicrobial Agents and Chemotherapy 2020―May―14 Accelerating drug development through repurposed FDA approved drugs for COVID-19: speed is important, not haste James T. Gordy, Kaushiki Mazumdar, Noton K. Dutta
1853 [GO] Journal of Virology 2020―May―14 Comparison of SARS-CoV-2 spike protein binding to ACE2 receptors from human, pets, farm animals, and putative intermediate hosts Xiaofeng Zhai, Jiumeng Sun, Ziqing Yan, Jie Zhang, Jin Zhao, Zongzheng Zhao, et al. (+4)
1854 [GO] mSphere 2020―May―13 COVID-19: Learning from Lessons To Guide Treatment and Prevention Interventions Chris R. Triggle, Devendra Bansal, Elmoubasher Abu Baker Abd Farag, Hong Ding, Ali A. Sultan, Helene F. Rosenberg
1855 [GO] Microbiology Resource Announcements 2020―May―13 Complete Genome Sequences of SARS-CoV-2 Strains Detected in Malaysia Yoong Min Chong, I-Ching Sam, Sasheela Ponnampalavanar, Sharifah Faridah Syed Omar, Adeeba Kamarulzaman, Vijayan Munusamy, et al. (+7)
1856 [GO] mSphere 2020―May―12 Can Unconventional Immunomodulatory Agents Help Alleviate COVID-19 Symptoms and Severity? Stephen W. Mamber, Steven Krakowka, Jeffrey Osborn, Lloyd Saberski, Ryan G. Rhodes, Albert E. Dahlberg, et al. (+6)
1857 [GO] Journal of Clinical Microbiology 2020―May―12 Open Development and Clinical Validation Of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck Cody J Callahan, Rose Lee, Katelyn E. Zulauf, Lauren Tamburello, Kenneth P. Smith, Joe Previtera, et al. (+7)
1858 [GO] Journal of Virology 2020―May―12 CD4 deficiency causes poliomyelitis and axonal blebbing in murine coronavirus induced neuroinflammation Debanjana Chakravarty, Fareeha Saadi, Soumya Kundu, Abhishek Bose, Reas Khan, Kimberly Dine, et al. (+3)
1859 [GO] mSphere 2020―May―12 Pandemics and People Michael J. Imperiale
1860 [GO] Journal of Clinical Microbiology 2020―May―08 Comparison of Two High-Throughput Reverse Transcription-Polymerase Chain Reaction Systems for the Detection of Severe Acute Respiratory Syndrome Coronavirus 2 Arryn R. Craney, Priya Velu, Michael J. Satlin, Kathy A. Fauntleroy, Katrina Callan, Amy Robertson, et al. (+9)
1861 [GO] Journal of Clinical Microbiology 2020―May―08 Performance Characteristics of the Abbott Architect SARS-CoV-2 IgG Assay and Seroprevalence in Boise, Idaho Andrew Bryan, Gregory Pepper, Mark H. Wener, Susan L. Fink, Chihiro Morishima, Anu Chaudhary, et al. (+3)
1862 [GO] Journal of Clinical Microbiology 2020―May―08 Understanding, verifying and implementing Emergency Use Authorization molecular diagnostics for the detection of SARS-CoV-2 RNA Stephanie L. Mitchell, Kirsten St. George, Daniel D. Rhoads, Susan M. Butler-Wu, Vaishali Dharmarha, Peggy McNult, Melissa B. Miller
1863 [GO] Journal of Virology 2020―May―07 Design of potent membrane fusion inhibitors against SARS-CoV-2, an emerging coronavirus with high fusogenic activity Yuanmei Zhu, Danwei Yu, Hongxia Yan, Huihui Chong, Yuxian He
1864 [GO] Microbiology Resource Announcements 2020―May―06 Near-Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Peru Carlos Padilla-Rojas, Priscila Lope-Pari, Karolyn Vega-Chozo, Johanna Balbuena-Torres, Omar Caceres-Rey, Henri Bailon-Calderon, et al. (+3)
1865 [GO] Antimicrobial Agents and Chemotherapy 2020―May―06 Inhibition of SARS-CoV-2 infection by the cyclophilin inhibitor Alisporivir (Debio 025) Laurent Softic, Rozenn Brillet, François Berry, Nazim Ahnou, Quentin Nevers, Margot Morin-Dewaele, et al. (+5)
1866 [GO] mSphere 2020―May―06 An Extensive Meta-Metagenomic Search Identifies SARS-CoV-2-Homologous Sequences in Pangolin Lung Viromes Lamia Wahba, Nimit Jain, Andrew Z. Fire, Massa J. Shoura, Karen L. Artiles, Matthew J. McCoy, et al. (+2)
1867 [GO] mSystems 2020―May―05 Correction for Dietz et al., “2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission” Leslie Dietz, Patrick F. Horve, David A. Coil, Mark Fretz, Jonathan A. Eisen, Kevin Van Den Wymelenberg
1868 [GO] mSystems 2020―May―05 SARS-CoV-2 and ORF3a: Nonsynonymous Mutations, Functional Domains, and Viral Pathogenesis Elio Issa, Georgi Merhi, Balig Panossian, Tamara Salloum, Sima Tokajian, Jack A. Gilbert
1869 [GO] Antimicrobial Agents and Chemotherapy 2020―May―05 Identification of antiviral drug candidates against SARS-CoV-2 from FDA-approved drugs Sangeun Jeon, Meehyun Ko, Jihye Lee, Inhee Choi, Soo Young Byun, Soonju Park, et al. (+2)
1870 [GO] Journal of Clinical Microbiology 2020―May―04 Multicenter Evaluation of the Cepheid Xpert Xpress SARS-CoV-2 Test Michael J. Loeffelholz, David Alland, Susan M. Butler-Wu, Utsav Pandey, Carlo Frederico Perno, Alice Nava, et al. (+21)
1871 [GO] Journal of Virology 2020―May―01 An 81 nucleotide deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020) LaRinda A. Holland, Emily A. Kaelin, Rabia Maqsood, Bereket Estifanos, Lily I. Wu, Arvind Varsani, et al. (+4)
1872 [GO] Journal of Clinical Microbiology 2020―Apr―30 Comparison of Commercially Available and Laboratory Developed Assays for in vitro Detection of SARS-CoV-2 in Clinical Laboratories Joshua A. Lieberman, Gregory Pepper, Samia N. Naccache, Meei-Li Huang, Keith R. Jerome, Alexander L. Greninger
1873 [GO] Journal of Clinical Microbiology 2020―Apr―29 The Role of Antibody Testing for SARS-CoV-2: Is There One? Elitza S. Theel, Patricia Slev, Sarah Wheeler, Marc Roger Couturier, Susan J. Wong, Kamran Kadkhoda
1874 [GO] Journal of Clinical Microbiology 2020―Apr―28 Evaluation of the QIAstat-Dx Respiratory SARS-CoV-2 Panel, the first rapid multiplex PCR commercial assay for SARS-CoV-2 detection Benoit Visseaux, Quentin Le Hingrat, Gilles Collin, Donia Bouzid, Samuel Lebourgeois, Diane Le Pluart, et al. (+9)
1875 [GO] Journal of Clinical Microbiology 2020―Apr―28 Comparison of Four Molecular In Vitro Diagnostic Assays for the Detection of SARS-CoV-2 in Nasopharyngeal Specimens Wei Zhen, Ryhana Manji, Elizabeth Smith, Gregory J. Berry
1876 [GO] Journal of Clinical Microbiology 2020―Apr―27 Evaluation of Transport Media and Specimen Transport Conditions for the Detection of SARS-CoV-2 Using Real Time Reverse Transcription PCR Amy A. Rogers, Russell E. Baumann, Gwynngelle A. Borillo, Ron M. Kagan, Hollis J. Batterman, Marzena Galdzicka, Elizabeth M. Marlowe
1877 [GO] Journal of Clinical Microbiology 2020―Apr―24 Clinical Evaluation of Three Sample-To-Answer Platforms for the Detection of SARS-CoV-2 Wei Zhen, Elizabeth Smith, Ryhana Manji, Deborah Schron, Gregory J. Berry
1878 [GO] Journal of Clinical Microbiology 2020―Apr―24 Comparison of Abbott ID Now and Abbott m2000 methods for the detection of SARS-CoV-2 from nasopharyngeal and nasal swabs from symptomatic patients Amanda Harrington, Brian Cox, Jennifer Snowdon, Jonathan Bakst, Erin Ley, Patricia Grajales, et al. (+2)
1879 [GO] mSphere 2020―Apr―22 COVID-19: an Immunopathological View Kamran Kadkhoda, Helene F. Rosenberg
1880 [GO] Journal of Clinical Microbiology 2020―Apr―22 Validation of the Hologic's Aptima Unisex and Multitest Specimen collection kits used for Endocervical and Male Urethral Swab Specimen (Aptima Swab) for sample collection of SARS-CoV-2. E. Avaniss-Aghajani, A. Sarkissian, F. Fernando, A. Avaniss-Aghajani
1881 [GO] Journal of Clinical Microbiology 2020―Apr―22 Saliva as a non-invasive specimen for detection of SARS-CoV-2 Eloise Williams, Katherine Bond, Bowen Zhang, Mark Putland, Deborah A Williamson
1882 [GO] Antimicrobial Agents and Chemotherapy 2020―Apr―21 Nafamostat mesylate blocks activation of SARS-CoV-2: New treatment option for COVID-19 Markus Hoffmann, Simon Schroeder, Hannah Kleine-Weber, Marcel A. Müller, Christian Drosten, Stefan Pöhlmann
1883 [GO] Journal of Clinical Microbiology 2020―Apr―20 Comparison of Abbott ID Now, Diasorin Simplexa, and CDC FDA EUA methods for the detection of SARS-CoV-2 from nasopharyngeal and nasal swabs from individuals diagnosed with COVID-19 Daniel D. Rhoads, Sree S. Cherian, Katharine Roman, Lisa M. Stempak, Christine L. Schmotzer, Navid Sadri
1884 [GO] Journal of Virology 2020―Apr―20 Human leukocyte antigen susceptibility map for SARS-CoV-2 Austin Nguyen, Julianne K. David, Sean K. Maden, Mary A. Wood, Benjamin R. Weeder, Abhinav Nellore, Reid F. Thompson
1885 [GO] Journal of Clinical Microbiology 2020―Apr―20 The Detection of SARS-CoV-2 using the Cepheid Xpert Xpress SARS-CoV-2 and Roche cobas SARS-CoV-2 Assays Angelica Moran, Kathleen G. Beavis, Scott M. Matushek, Carol Ciaglia, Nina Francois, Vera Tesic, Nedra Love
1886 [GO] Journal of Clinical Microbiology 2020―Apr―16 Comparison of Copan Eswab and FLOQswab for COVID-19 PCR diagnosis: working around a supply shortage Christie Vermeiren, Xavier Marchand-Senécal, Elena Sheldrake, David Bulir, Marek Smieja, Sylvia Chong, et al. (+2)
1887 [GO] Journal of Virology 2020―Apr―16 Ca2+ ions promote fusion of Middle East respiratory syndrome coronavirus with host cells and increase infectivity Marco R. Straus, Tiffany Tang, Alex L. Lai, Annkatrin Flegel, Miya Bidon, Jack H. Freed, et al. (+2)
1888 [GO] Journal of Clinical Microbiology 2020―Apr―16 Nasal swab sampling for SARS-CoV-2: A convenient alternative in time of nasopharyngeal swab shortage Hélène Péré, Isabelle Podglajen, Maxime Wack, Edouard Flamarion, Tristan Mirault, Guillaume Goudot, et al. (+8)
1889 [GO] Journal of Virology 2020―Apr―15 Middle East respiratory syndrome coronavirus nucleocapsid protein suppresses type I and type III interferon induction by targeting RIG-I signaling Chi-You Chang, Helene Minyi Liu, Ming-Fu Chang, Shin C. Chang
1890 [GO] Journal of Clinical Microbiology 2020―Apr―13 Clinical evaluation of the cobas SARS-CoV-2 test and a diagnostic platform switch during 48 hours in the midst of the COVID-19 pandemic Mario Poljak, Miša Korva, Nataša Knap Gašper, Kristina Fujs Komloš, Martin Sagadin, Tina Uršič, et al. (+2)
1891 [GO] mSystems 2020―Apr―13 Repurposing Didanosine as a Potential Treatment for COVID-19 Using Single-Cell RNA Sequencing Data Fadhl M. Alakwaa, Jack A. Gilbert
1892 [GO] Journal of Clinical Microbiology 2020―Apr―13 A method to prevent SARS-CoV-2 IgM false positives in gold immunochromatography and enzyme-linked immunosorbent assays Qiang Wang, Qin Du, Bin Guo, Daiyong Mu, Xiaolan Lu, Qiang Ma, et al. (+5)
1893 [GO] Journal of Clinical Microbiology 2020―Apr―07 Comparative Performance of SARS-CoV-2 Detection Assays using Seven Different Primer/Probe Sets and One Assay Kit Arun K. Nalla, Amanda M. Casto, Meei-Li W. Huang, Garrett A. Perchetti, Reigran Sampoleo, Lasata Shrestha, et al. (+4)
1894 [GO] Journal of Virology 2020―Apr―07 International expansion of a novel SARS-CoV-2 mutant Minjin Wang, Mengjiao Li, Ruotong Ren, Lifeng Li, En-Qiang Chen, Weimin Li, Binwu Ying
1895 [GO] Journal of Clinical Microbiology 2020―Apr―06 A pandemic in times of global tourism: superspreading and exportation of COVID-19 cases from a ski area in Austria Carlos L. Correa-Martínez, Stefanie Kampmeier, Philipp Kümpers, Vera Schwierzeck, Marc Hennies, Wali Hafezi, et al. (+4)
1896 [GO] Journal of Clinical Microbiology 2020―Apr―06 The Laboratory Diagnosis of COVID-19 Infection: Current Issues and Challenges Yi-Wei Tang, Jonathan E. Schmitz, David H. Persing, Charles W. Stratton
1897 [GO] mSystems 2020―Apr―06 2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission Leslie Dietz, Patrick F. Horve, David A. Coil, Mark Fretz, Jonathan A. Eisen, Kevin Van Den Wymelenberg, Jack A. Gilbert
1898 [GO] mBio 2020―Apr―06 Single-Dose, Intranasal Immunization with Recombinant Parainfluenza Virus 5 Expressing Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Spike Protein Protects Mice from Fatal MERS-CoV Infection Kun Li, Zhuo Li, Christine Wohlford-Lenane, David K. Meyerholz, Rudragouda Channappanavar, Dong An, et al. (+4)
1899 [GO] Journal of Virology 2020―Mar―31 Isolation and full-length genome characterization of SARS-CoV-2 from COVID-19 cases in Northern Italy Danilo Licastro, Sreejith Rajasekharan, Simeone Dal Monego, Ludovica Segat, Pierlanfranco D'Agaro, Alessandro Marcello
1900 [GO] Journal of Virology 2020―Mar―31 Computational inference of selection underlying the evolution of the novel coronavirus, SARS-CoV-2 Rachele Cagliani, Diego Forni, Mario Clerici, Manuela Sironi
1901 [GO] Journal of Clinical Microbiology 2020―Mar―31 Evaluation of Nucleocapsid and Spike Protein-based ELISAs for detecting antibodies against SARS-CoV-2 Wanbing Liu, Lei Liu, Guomei Kou, Yaqiong Zheng, Yinjuan Ding, Wenxu Ni, et al. (+6)
1902 [GO] Journal of Clinical Microbiology 2020―Mar―31 Evaluation of saline, phosphate buffered saline and minimum essential medium as potential alternatives to viral transport media for SARS-CoV-2 testing Kyle G. Rodino, Mark J. Espy, Seanne P. Buckwalter, Robert C. Walchak, Jeffery J. Germer, Emily Fernholz, et al. (+4)
1903 [GO] mBio 2020―Mar―30 Report from the American Society for Microbiology COVID-19 International Summit, 23 March 2020: Value of Diagnostic Testing for SARS-CoV-2/COVID-19 Robin Patel, Esther Babady, Elitza S. Theel, Gregory A. Storch, Benjamin A. Pinsky, Kirsten St. George, et al. (+2)
1904 [GO] mBio 2020―Mar―23 Hiding in Plain Sight: an Approach to Treating Patients with Severe COVID-19 Infection David S. Fedson, Steven M. Opal, Ole Martin Rordam
1905 [GO] Antimicrobial Agents and Chemotherapy 2020―Mar―19 Updated approaches against SARS-CoV-2 Haiou Li, Yunjiao Zhou, Meng Zhang, Haizhou Wang, Qiu Zhao, Jing Liu
1906 [GO] mSphere 2020―Mar―17 COVID-19: Knowns, Unknowns, and Questions Stuart Weston, Matthew B. Frieman
1907 [GO] mSphere 2020―Mar―17 Correction for Li et al., “Discovery of Bat Coronaviruses through Surveillance and Probe Capture-Based Next-Generation Sequencing” Bei Li, Hao-Rui Si, Yan Zhu, Xing-Lou Yang, Danielle E. Anderson, Zheng-Li Shi, et al. (+2)
1908 [GO] Journal of Virology 2020―Mar―16 Coronavirus Endoribonuclease and Deubiquitinating Interferon Antagonists Differentially Modulate the Host Response during Replication in Macrophages Aaron Volk, Matthew Hackbart, Xufang Deng, Yazmin Cruz-Pulido, Amornrat O'Brien, Susan C. Baker
1909 [GO] Journal of Virology 2020―Mar―13 Structure-Guided Mutagenesis Alters Deubiquitinating Activity and Attenuates Pathogenesis of a Murine Coronavirus Xufang Deng, Yafang Chen, Anna M. Mielech, Matthew Hackbart, Kristina R. Kesely, Robert C. Mettelman, et al. (+4)
1910 [GO] Microbiology Resource Announcements 2020―Mar―11 Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal Ranjit Sah, Alfonso J. Rodriguez-Morales, Runa Jha, Daniel K. W. Chu, Haogao Gu, Malik Peiris, et al. (+10)
1911 [GO] Journal of Virology 2020―Mar―09 Host Protein Interactions with the 3′ End of Bovine Coronavirus RNA and the Requirement of the Poly(A) Tail for Coronavirus Defective Genome Replication Jeannie F. Spagnolo, Brenda G. Hogue
1912 [GO] Journal of Virology 2020―Mar―09 Assembly of the Coronavirus Envelope: Homotypic Interactions between the M Proteins Cornelis A. M. de Haan, Harry Vennema, Peter J. M. Rottier
1913 [GO] Journal of Clinical Microbiology 2020―Mar―09 A Filamentous Phage Associated with Recent PandemicVibrio parahaemolyticus O3:K6 Strains Hatsumi Nasu, Tetsuya Iida, Tomomi Sugahara, Yoshiharu Yamaichi, Kwon-Sam Park, Katsushi Yokoyama, et al. (+3)
1914 [GO] Journal of Clinical Microbiology 2020―Mar―09 A Filamentous Phage Associated with Recent PandemicVibrio parahaemolyticus O3:K6 Strains Hatsumi Nasu, Tetsuya Iida, Tomomi Sugahara, Yoshiharu Yamaichi, Kwon-Sam Park, Katsushi Yokoyama, et al. (+3)
1915 [GO] Antimicrobial Agents and Chemotherapy 2020―Mar―06 Compounds with therapeutic potential against novel respiratory 2019 coronavirus Miguel Angel Martinez
1916 [GO] Journal of Clinical Microbiology 2020―Mar―06 The emergence of a novel coronavirus (SARS-CoV-2), their biology and therapeutic options Suliman Khan, Rabeea Siddique, Muhammad Adnan Shereen, Ashaq Ali, Jianbo Liu, Qian Bai, et al. (+2)
1917 [GO] Journal of Clinical Microbiology 2020―Mar―05 Improved molecular diagnosis of COVID-19 by the novel, highly sensitive and specific COVID-19-RdRp/Hel real-time reverse transcription-polymerase chain reaction assay validated in vitro and with clinical specimens Jasper Fuk-Woo Chan, Cyril Chik-Yan Yip, Kelvin Kai-Wang To, Tommy Hing-Cheung Tang, Sally Cheuk-Ying Wong, Kit-Hang Leung, et al. (+10)
1918 [GO] Microbiology Resource Announcements 2020―Feb―26 Complete Genome Sequence of Avian Coronavirus Strain GA08 (GI-27 Lineage) Iryna V. Goraichuk, James F. Davis, Arun B. Kulkarni, Claudio L. Afonso, David L. Suarez, Simon Roux
1919 [GO] Microbiology Resource Announcements 2020―Feb―26 A 25-Year-Old Sample Contributes the Complete Genome Sequence of Avian Coronavirus Vaccine Strain ArkDPI, Reisolated from Commercial Broilers in the United States Iryna V. Goraichuk, James F. Davis, Arun B. Kulkarni, Claudio L. Afonso, David L. Suarez, Simon Roux
1920 [GO] Journal of Clinical Microbiology 2020―Feb―25 Negative Nasopharyngeal and Oropharyngeal Swab Does Not Rule Out COVID-19 Poramed Winichakoon, Romanee Chaiwarith, Chalerm Liwsrisakun, Parichat Salee, Aree Goonna, Atikun Limsukon, Quanhathai Kaewpoowat
1921 [GO] Microbiology Resource Announcements 2020―Feb―19 Complete Genome Sequences of Five Human Coronavirus NL63 Strains Causing Respiratory Illness in Hospitalized Children in China Lu Zhang, Mian Gan, Zhaoyong Zhang, Xin Li, Wenkuan Liu, Airu Zhu, et al. (+8)
1922 [GO] mBio 2020―Feb―10 Distinct Roles for Sialoside and Protein Receptors in Coronavirus Infection Enya Qing, Michael Hantak, Stanley Perlman, Tom Gallagher, Mark R. Denison
1923 [GO] Journal of Virology 2020―Jan―31 Receptor recognition by novel coronavirus from Wuhan: An analysis based on decade-long structural studies of SARS Yushun Wan, Jian Shang, Rachel Graham, Ralph S. Baric, Fang Li
1924 [GO] mSphere 2020―Jan―28 Discovery of Bat Coronaviruses through Surveillance and Probe Capture-Based Next-Generation Sequencing Bei Li, Hao-Rui Si, Yan Zhu, Xing-Lou Yang, Danielle E. Anderson, Zheng-Li Shi, et al. (+3)
1925 [GO] mSphere 2020―Jan―21 Middle East Respiratory Syndrome Coronavirus Antibodies in Bactrian and Hybrid Camels from Dubai Susanna K. P. Lau, Kenneth S. M. Li, Hayes K. H. Luk, Zirong He, Jade L. L. Teng, Kwok-Yung Yuen, et al. (+3)
1926 [GO] mSphere 2020―Jan―21 Proposed Changes to U.S. Policy on Potential Pandemic Pathogen Oversight and Implementation Thomas V. Inglesby, Marc Lipsitch
1927 [GO] Journal of Virology 2020―Jan―06 Point mutations in the S protein connect the sialic acid binding activity with the enteropathogenicity of transmissible gastroenteritis coronavirus. C Krempl, B Schultze, H Laude, G Herrler
1928 [GO] Journal of Virology 2020―Jan―06 Disassociation between the in vitro and in vivo effects of nitric oxide on a neurotropic murine coronavirus. T E Lane, A D Paoletti, M J Buchmeier
1929 [GO] Journal of Virology 2020―Jan―06 Episodic evolution mediates interspecies transfer of a murine coronavirus. R S Baric, B Yount, L Hensley, S A Peel, W Chen
1930 [GO] Journal of Virology 2020―Jan―06 Cytotoxic T-cell-resistant variants arise at early times after infection in C57BL/6 but not in SCID mice infected with a neurotropic coronavirus. L Pewe, S Xue, S Perlman
1931 [GO] Journal of Virology 2020―Jan―06 Maintenance of pluripotency in mouse embryonic stem cells persistently infected with murine coronavirus. A Okumura, K Machii, S Azuma, Y Toyoda, S Kyuwa
1932 [GO] Journal of Virology 2020―Jan―06 Tropism of human adenovirus type 5-based vectors in swine and their ability to protect against transmissible gastroenteritis coronavirus. J M Torres, C Alonso, A Ortega, S Mittal, F Graham, L Enjuanes
1933 [GO] Journal of Clinical Microbiology 2020―Jan―06 Two related strains of feline infectious peritonitis virus isolated from immunocompromised cats infected with a feline enteric coronavirus. A M Poland, H Vennema, J E Foley, N C Pedersen
1934 [GO] Journal of Virology 2020―Jan―06 Identification of the catalytic sites of a papain-like cysteine proteinase of murine coronavirus. S C Baker, K Yokomori, S Dong, R Carlisle, A E Gorbalenya, E V Koonin, M M Lai
1935 [GO] Journal of Virology 2020―Jan―06 Coronavirus isolates SK and SD from multiple sclerosis patients are serologically related to murine coronaviruses A59 and JHM and human coronavirus OC43, but not to human coronavirus 229E. J C Gerdes, I Klein, B L DeVald, J S Burks
1936 [GO] Journal of Virology 2020―Jan―06 Identification of an ATPase activity associated with a 71-kilodalton polypeptide encoded in gene 1 of the human coronavirus 229E. G Heusipp, U Harms, S G Siddell, J Ziebuhr
1937 [GO] Journal of Virology 2020―Jan―06 Biosynthesis, purification, and characterization of the human coronavirus 229E 3C-like proteinase. J Ziebuhr, G Heusipp, S G Siddell
1938 [GO] Journal of Virology 2020―Jan―06 Inhibition of coronavirus 229E replication by actinomycin D. D A Kennedy, C M Johnson-Lussenburg
1939 [GO] Journal of Virology 2020―Jan―06 Sequence and translation of the murine coronavirus 5'-end genomic RNA reveals the N-terminal structure of the putative RNA polymerase. L H Soe, C K Shieh, S C Baker, M F Chang, M M Lai
1940 [GO] Journal of Virology 2020―Jan―06 Antigenic relationships among proteins of bovine coronavirus, human respiratory coronavirus OC43, and mouse hepatitis coronavirus A59. B G Hogue, B King, D A Brian
1941 [GO] Journal of Virology 2020―Jan―06 Membrane protein molecules of transmissible gastroenteritis coronavirus also expose the carboxy-terminal region on the external surface of the virion. C Risco, I M Antón, C Suñé, A M Pedregosa, J M Martín-Alonso, F Parra, et al. (+2)
1942 [GO] Journal of Virology 2020―Jan―06 Genetic analysis of porcine respiratory coronavirus, an attenuated variant of transmissible gastroenteritis virus. R D Wesley, R D Woods, A K Cheung
1943 [GO] Journal of Virology 2020―Jan―06 CD8+ T-cell epitopes within the surface glycoprotein of a neurotropic coronavirus and correlation with pathogenicity. R F Castro, S Perlman
1944 [GO] Clinical and Diagnostic Laboratory Immunology 2020―Jan―06 Prevalence of antibodies to feline parvovirus, calicivirus, herpesvirus, coronavirus, and immunodeficiency virus and of feline leukemia virus antigen and the interrelationship of these viral infections in free-ranging lions in east Africa. R Hofmann-Lehmann, D Fehr, M Grob, M Elgizoli, C Packer, J S Martenson, et al. (+2)
1945 [GO] Journal of Virology 2020―Jan―06 Neutralization-resistant variants of a neurotropic coronavirus are generated by deletions within the amino-terminal half of the spike glycoprotein. T M Gallagher, S E Parker, M J Buchmeier
1946 [GO] Journal of Virology 2020―Jan―06 Entry and release of transmissible gastroenteritis coronavirus are restricted to apical surfaces of polarized epithelial cells. J W Rossen, C P Bekker, W F Voorhout, G J Strous, A van der Ende, P J Rottier
1947 [GO] Journal of Virology 2020―Jan―06 A 5'-proximal RNA sequence of murine coronavirus as a potential initiation site for genomic-length mRNA transcription. X Zhang, M M Lai
1948 [GO] Journal of Virology 2020―Jan―06 Protein interactions during coronavirus assembly. V P Nguyen, B G Hogue
1949 [GO] Journal of Clinical Microbiology 2020―Jan―06 Characterization of monoclonal antibodies to the hemagglutinin-esterase glycoprotein of a bovine coronavirus associated with winter dysentery and cross-reactivity to field isolates. G Milane, A B Kourtesis, S Dea
1950 [GO] Journal of Virology 2020―Jan―06 Characterization in vitro of an autocatalytic processing activity associated with the predicted 3C-like proteinase domain of the coronavirus avian infectious bronchitis virus. K W Tibbles, I Brierley, D Cavanagh, T D Brown
1951 [GO] Journal of Virology 2020―Jan―06 Coronavirus species specificity: murine coronavirus binds to a mouse-specific epitope on its carcinoembryonic antigen-related receptor glycoprotein. S R Compton, C B Stephensen, S W Snyder, D G Weismiller, K V Holmes
1952 [GO] Journal of Virology 2020―Jan―06 Transmissible gastroenteritis coronavirus, but not the related porcine respiratory coronavirus, has a sialic acid (N-glycolylneuraminic acid) binding activity. B Schultze, C Krempl, M L Ballesteros, L Shaw, R Schauer, L Enjuanes, G Herrler
1953 [GO] Journal of Virology 2020―Jan―06 A novel glycoprotein of feline infectious peritonitis coronavirus contains a KDEL-like endoplasmic reticulum retention signal. H Vennema, L Heijnen, P J Rottier, M C Horzinek, W J Spaan
1954 [GO] Journal of Virology 2020―Jan―06 The transmissible gastroenteritis coronavirus contains a spherical core shell consisting of M and N proteins. C Risco, I M Antón, L Enjuanes, J L Carrascosa
1955 [GO] Journal of Virology 2020―Jan―06 The UCUAAAC promoter motif is not required for high-frequency leader recombination in bovine coronavirus defective interfering RNA. R Y Chang, R Krishnan, D A Brian
1956 [GO] Journal of Virology 2020―Jan―06 Replication of murine coronavirus defective interfering RNA from negative-strand transcripts. M Joo, S Banerjee, S Makino
1957 [GO] Journal of Virology 2020―Jan―06 Characterization of a murine coronavirus defective interfering RNA internal cis-acting replication signal. Y N Kim, S Makino
1958 [GO] Journal of Virology 2020―Jan―06 cis Requirement for N-specific protein sequence in bovine coronavirus defective interfering RNA replication. R Y Chang, D A Brian
1959 [GO] Journal of Virology 2020―Jan―06 High-frequency leader sequence switching during coronavirus defective interfering RNA replication. S Makino, M M Lai
1960 [GO] Journal of Virology 2020―Jan―06 A domain at the 3' end of the polymerase gene is essential for encapsidation of coronavirus defective interfering RNAs. R G van der Most, P J Bredenbeek, W J Spaan
1961 [GO] Journal of Virology 2020―Jan―06 The fitness of defective interfering murine coronavirus DI-a and its derivatives is decreased by nonsense and frameshift mutations. R J de Groot, R G van der Most, W J Spaan
1962 [GO] Journal of Virology 2020―Jan―06 Evidence for coronavirus discontinuous transcription. Y S Jeong, S Makino
1963 [GO] Journal of Virology 2020―Jan―06 Coronavirus E1 glycoprotein expressed from cloned cDNA localizes in the Golgi region. P J Rottier, J K Rose
1964 [GO] Journal of Virology 2020―Jan―06 Isolation of coronavirus envelope glycoproteins and interaction with the viral nucleocapsid. L S Sturman, K V Holmes, J Behnke
1965 [GO] Journal of Virology 2020―Jan―06 A conserved coronavirus epitope, critical in virus neutralization, mimicked by internal-image monoclonal anti-idiotypic antibodies. C Suñé, C Smerdou, I M Antón, P Abril, J Plana, L Enjuanes
1966 [GO] Journal of Virology 2020―Jan―06 Interspecies aminopeptidase-N chimeras reveal species-specific receptor recognition by canine coronavirus, feline infectious peritonitis virus, and transmissible gastroenteritis virus. L Benbacer, E Kut, L Besnardeau, H Laude, B Delmas
1967 [GO] Journal of Virology 2020―Jan―06 Selective tropism of a neurotropic coronavirus for ependymal cells, neurons, and meningeal cells. M Tardieu, O Boespflug, T Barbé
1968 [GO] Journal of Virology 2020―Jan―06 Assembled coronavirus from complementation of two defective interfering RNAs. K H Kim, K Narayanan, S Makino
1969 [GO] Journal of Clinical Microbiology 2020―Jan―06 Isolation and characterization of a coronavirus from elk calves with diarrhea. F Majhdi, H C Minocha, S Kapil
1970 [GO] Journal of Clinical Microbiology 2020―Jan―06 Isolation of coronaviruses antigenically indistinguishable from bovine coronavirus from wild ruminants with diarrhea. H Tsunemitsu, Z R el-Kanawati, D R Smith, H H Reed, L J Saif
1971 [GO] Journal of Virology 2020―Jan―06 Identification of a domain required for autoproteolytic cleavage of murine coronavirus gene A polyprotein. S C Baker, C K Shieh, L H Soe, M F Chang, D M Vannier, M M Lai
1972 [GO] Journal of Virology 2020―Jan―06 Two murine coronavirus genes suffice for viral RNA synthesis. K H Kim, S Makino
1973 [GO] Journal of Virology 2020―Jan―06 Bovine coronavirus genome. J S Guy, D A Brian
1974 [GO] Journal of Virology 2020―Jan―06 Coronavirus genomic and subgenomic minus-strand RNAs copartition in membrane-protected replication complexes. P B Sethna, D A Brian
1975 [GO] Journal of Virology 2020―Jan―06 Disulfide bonds in folding and transport of mouse hepatitis coronavirus glycoproteins. D J Opstelten, P de Groote, M C Horzinek, H Vennema, P J Rottier
1976 [GO] Journal of Virology 2020―Jan―06 Expression and secretion of the bovine coronavirus hemagglutinin-esterase glycoprotein by insect cells infected with recombinant baculoviruses. M D Parker, D Yoo, L A Babiuk
1977 [GO] Journal of Virology 2020―Jan―06 Structure and orientation of expressed bovine coronavirus hemagglutinin-esterase protein. T E Kienzle, S Abraham, B G Hogue, D A Brian
1978 [GO] Journal of Virology 2020―Jan―06 In vivo RNA-RNA recombination of coronavirus in mouse brain. J G Keck, G K Matsushima, S Makino, J O Fleming, D M Vannier, S A Stohlman, M M Lai
1979 [GO] Journal of Clinical Microbiology 2020―Jan―06 Application of immunohistochemistry and in situ hybridization for detection of bovine coronavirus in paraffin-embedded, formalin-fixed intestines. Z Zhang, G A Andrews, C Chard-Bergstrom, H C Minocha, S Kapil
1980 [GO] Journal of Virology 2020―Jan―06 Induction of self-reactive T cells after murine coronavirus infection. S Kyuwa, K Yamaguchi, Y Toyoda, K Fujiwara
1981 [GO] Journal of Virology 2020―Jan―06 Interference of coronavirus infection by expression of immunoglobulin G (IgG) or IgA virus-neutralizing antibodies. J Castilla, I Sola, L Enjuanes
1982 [GO] Journal of Virology 2020―Jan―06 Intrinsic resistance of feline peritoneal macrophages to coronavirus infection correlates with in vivo virulence. C A Stoddart, F W Scott
1983 [GO] Journal of Virology 2020―Jan―06 Prevalence and implications of feline coronavirus infections of captive and free-ranging cheetahs (Acinonyx jubatus). J L Heeney, J F Evermann, A J McKeirnan, L Marker-Kraus, M E Roelke, M Bush, et al. (+4)
1984 [GO] Journal of Virology 2020―Jan―06 Structural analysis of virion proteins of the avian coronavirus infectious bronchitis virus. D F Stern, L Burgess, B M Sefton
1985 [GO] Journal of Virology 2020―Jan―06 Proteolytic processing of the coronavirus infectious bronchitis virus 1a polyprotein: identification of a 10-kilodalton polypeptide and determination of its cleavage sites. D X Liu, H Y Xu, T D Brown
1986 [GO] Journal of Virology 2020―Jan―06 Replication and packaging of coronavirus infectious bronchitis virus defective RNAs lacking a long open reading frame. Z Pénzes, C Wroe, T D Brown, P Britton, D Cavanagh
1987 [GO] Journal of Virology 2020―Jan―06 A 100-kilodalton polypeptide encoded by open reading frame (ORF) 1b of the coronavirus infectious bronchitis virus is processed by ORF 1a products. D X Liu, I Brierley, K W Tibbles, T D Brown
1988 [GO] Journal of Virology 2020―Jan―06 Mutagenic analysis of the coronavirus intergenic consensus sequence. M Joo, S Makino
1989 [GO] Journal of Virology 2020―Jan―06 The S protein of bovine coronavirus is a hemagglutinin recognizing 9-O-acetylated sialic acid as a receptor determinant. B Schultze, H J Gross, R Brossmer, G Herrler
1990 [GO] Journal of Virology 2020―Jan―06 The E3 protein of bovine coronavirus is a receptor-destroying enzyme with acetylesterase activity. R Vlasak, W Luytjes, J Leider, W Spaan, P Palese
1991 [GO] Journal of Virology 2020―Jan―06 The nucleocapsid protein gene of bovine coronavirus is bicistronic. S D Senanayake, M A Hofmann, J L Maki, D A Brian
1992 [GO] Journal of Virology 2020―Jan―06 Functional differences in the peplomer glycoproteins of feline coronavirus isolates. S A Fiscus, Y A Teramoto
1993 [GO] Journal of Virology 2020―Jan―06 Sequence comparison of porcine respiratory coronavirus isolates reveals heterogeneity in the S, 3, and 3-1 genes. E M Vaughn, P G Halbur, P S Paul
1994 [GO] Journal of Virology 2020―Jan―06 Antigenic comparison of feline coronavirus isolates: evidence for markedly different peplomer glycoproteins. S A Fiscus, Y A Teramoto
1995 [GO] Journal of Virology 2020―Jan―06 Infection by coronavirus JHM of rat neurons and oligodendrocyte-type-2 astrocyte lineage cells during distinct developmental stages. J M Pasick, S Dales
1996 [GO] Journal of Virology 2020―Jan―06 Pathogenicity of antigenic variants of murine coronavirus JHM selected with monoclonal antibodies. J O Fleming, M D Trousdale, F A el-Zaatari, S A Stohlman, L P Weiner
1997 [GO] Journal of Virology 2020―Jan―06 Coronavirus JHM: Cell-Free Synthesis of Structural Protein p60 Stuart G. Siddell, Helmut Wege, Andrea Barthel, Volker ter Meulen
1998 [GO] Journal of Virology 2020―Jan―06 Fusion formation by the uncleaved spike protein of murine coronavirus JHMV variant cl-2. F Taguchi
1999 [GO] Journal of Virology 2020―Jan―06 A cis-acting function for the coronavirus leader in defective interfering RNA replication. R Y Chang, M A Hofmann, P B Sethna, D A Brian
2000 [GO] Journal of Virology 2020―Jan―06 Specific interaction between coronavirus leader RNA and nucleocapsid protein. S A Stohlman, R S Baric, G N Nelson, L H Soe, L M Welter, R J Deans
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