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COVID answers in Scientific Journals all over the world

Publishing House: American Society for Microbiology

1695 Results       Page 1

 [1] 
  original article Journal Date Title Authors All Authors
1 [GO] Journal of Virology 2022―Aug―04 Proteolytic Processing of the Coronavirus Replicase Nonstructural Protein 14 Exonuclease Is Not Required for Virus Replication but Alters RNA Synthesis and Viral Fitness Jordan Anderson-Daniels, Jennifer Gribble, Mark Denison, Tom Gallagher
2 [GO] Journal of Virology 2022―Aug―04 The SARS-CoV nsp12 Polymerase Active Site Is Tuned for Large-Genome Replication Grace Campagnola, Vishnu Govindarajan, Annelise Pelletier, Bruno Canard, Olve B. Peersen, Anice C. Lowen
3 [GO] Journal of Virology 2022―Aug―04 Structural Study of SARS-CoV-2 Antibodies Identifies a Broad-Spectrum Antibody That Neutralizes the Omicron Variant by Disassembling the Spike Trimer Wuqiang Zhan, Xiaolong Tian, Xiang Zhang, Shenghui Xing, Wenping Song, Qianying Liu, et al. (+8)
4 [GO] mBio 2022―Aug―04 Neutralization Titers in Vaccinated Patients with SARS-CoV-2 Delta Breakthrough Infections Jing Zou, Xuping Xie, Mingru Liu, Pei-Yong Shi, Ping Ren, Sara Cherry
5 [GO] Journal of Virology 2022―Aug―04 A SCID Mouse Model To Evaluate the Efficacy of Antivirals against SARS-CoV-2 Infection Rana Abdelnabi, Caroline S. Foo, Suzanne J. F. Kaptein, Robbert Boudewijns, Laura Vangeel, Steven De Jonghe, et al. (+4)
6 [GO] Journal of Virology 2022―Aug―04 Pandemic 1918 Influenza Virus Does Not Cause Lethal Infection in Rhesus or Cynomolgus Macaques Mable Chan, Meenakshi Tiwary, Helen L. Wu, Nikesh Tailor, Robert Vendramelli, Jonathan Audet, et al. (+15)
7 [GO] Journal of Virology 2022―Aug―02 A Bispecific Antibody Targeting RBD and S2 Potently Neutralizes SARS-CoV-2 Omicron and Other Variants of Concern Mengqi Yuan, Xiangyu Chen, Yanzhi Zhu, Xiaoqing Dong, Yan Liu, Zhaohui Qian, et al. (+3)
8 [GO] mSphere 2022―Aug―01 Repressed Ang 1-7 in COVID-19 Is Inversely Associated with Inflammation and Coagulation Rebecca M. Carpenter, Mary K. Young, William A. O. Petri, Genevieve R. Lyons, Carol Gilchrist, Robert M. Carey, et al. (+2)
9 [GO] mBio 2022―Aug―01 Impact of SARS-CoV-2 Spike Mutations on Its Activation by TMPRSS2 and the Alternative TMPRSS13 Protease Annelies Stevaert, Ria Van Berwaer, Cato Mestdagh, Julie Vandeput, Els Vanstreels, Valerie Raeymaekers, et al. (+3)
10 [GO] mBio 2022―Jul―28 A Bacteriophage-Based, Highly Efficacious, Needle- and Adjuvant-Free, Mucosal COVID-19 Vaccine Jingen Zhu, Swati Jain, Jian Sha, Himanshu Batra, Neeti Ananthaswamy, Paul B. Kilgore, et al. (+13)
11 [GO] Applied and Environmental Microbiology 2022―Jul―27 Erratum for Bailey et al., “Persistence of Coronavirus Surrogates on Meat and Fish Products during Long-Term Storage” Emily S. Bailey, Marina Curcic, Mark D. Sobsey
12 [GO] Journal of Virology 2022―Jul―25 Acquisition of Furin Cleavage Site and Further SARS-CoV-2 Evolution Change the Mechanisms of Viral Entry, Infection Spread, and Cell Signaling Elena I. Frolova, Oksana Palchevska, Tetyana Lukash, Francisco Dominguez, William Britt, Ilya Frolov, Tom Gallagher
13 [GO] Microbiology Spectrum 2022―Jul―21 Discrimination of SARS-CoV-2 Omicron Sublineages BA.1 and BA.2 Using a High-Resolution Melting-Based Assay: a Pilot Study Akira Aoki, Hirokazu Adachi, Yoko Mori, Miyabi Ito, Katsuhiko Sato, Kenji Okuda, et al. (+4)
14 [GO] Microbiology Spectrum 2022―Jul―20 SARS-CoV-2 Convalescent Sera Binding and Neutralizing Antibody Concentrations Compared with COVID-19 Vaccine Efficacy Estimates against Symptomatic Infection Amy J. Schuh, Panayampalli S. Satheshkumar, Stephanie Dietz, Lara Bull-Otterson, Myrna Charles, Chris Edens, et al. (+21)
15 [GO] Journal of Virology 2022―Jul―20 Sequence Exchange Involving Dozens of Consecutive Bases with External Origin in SARS-Related Coronaviruses Tetsuya Akaishi, Akira Horii, Tadashi Ishii, Tom Gallagher
16 [GO] mBio 2022―Jul―20 Ubiquitination of SARS-CoV-2 NSP6 and ORF7a Facilitates NF-κB Activation Hironori Nishitsuji, Satoko Iwahori, Mariko Ohmori, Kunitada Shimotohno, Takayuki Murata, Adriana Forero, Kellie Jurado
17 [GO] Microbiology Spectrum 2022―Jul―19 Increased Presence of Antibodies against Type I Interferons and Human Endogenous Retrovirus W in Intensive Care Unit COVID-19 Patients Elena Rita Simula, Maria Antonietta Manca, Marta Noli, Somaye Jasemi, Stefano Ruberto, Sergio Uzzau, et al. (+4)
18 [GO] Microbiology Spectrum 2022―Jul―19 Cell-Based Platform for Antigen Testing and Its Application for SARS-CoV-2 Infection Marvin A. Ssemadaali, Sherri Newmyer, Harikrishnan Radhakrishnan, Juan Arredondo, Harold S. Javitz, Satya Dandekar, et al. (+2)
19 [GO] Microbiology Resource Announcements 2022―Jul―19 Near-Full-Length Genome Sequences Representing an Event of Zooanthroponotic Transmission of SARS-CoV-2 Lineage B.1.189 in Mexico during 2020 Roberto Navarro-Lopez, Mario Solis-Hernandez, Marisol K. Rocha-Martinez, Samantha Eberl, Ninnet Gomez-Romero, Lauro Velazquez-Salinas, et al. (+2)
20 [GO] Microbiology Spectrum 2022―Jul―19 Contrasting Distribution of SARS-CoV-2 Lineages across Multiple Rounds of Pandemic Waves in West Bengal, the Gateway of East and North-East States of India Animesh K. Singh, Rezwanuzzaman Laskar, Anindita Banerjee, Rajiv Kumar Mondal, Bishal Gupta, Sonia Deb, et al. (+27)
21 [GO] Microbiology Spectrum 2022―Jul―18 Diagnostic Performance Assessment of Saliva RT-PCR and Nasopharyngeal Antigen for the Detection of SARS-CoV-2 in Peru Roger I. Calderón, Tulip A. Jhaveri, Marco A. Tovar, J. Santiago Palomino, Nadia N. Barreda, Oswaldo M. Sanabria, et al. (+9)
22 [GO] mBio 2022―Jul―13 A Retinol Derivative Inhibits SARS-CoV-2 Infection by Interrupting Spike-Mediated Cellular Entry Liangqin Tong, Lin Wang, Shumin Liao, Xiaoping Xiao, Jing Qu, Chunli Wu, et al. (+9)
23 [GO] Microbiology Spectrum 2022―Jul―13 Goblet Cell Hyperplasia Increases SARS-CoV-2 Infection in Chronic Obstructive Pulmonary Disease Jaspreet Osan, Sattya N. Talukdar, Friederike Feldmann, Beth Ann DeMontigny, Kailey Jerome, Kristina L. Bailey, et al. (+3)
24 [GO] mBio 2022―Jul―13 Genetic Surveillance of SARS-CoV-2 M pro Reveals High Sequence and Structural Conservation Prior to the Introduction of Protease Inhibitor Paxlovid Jonathan T. Lee, Qingyi Yang, Alexey Gribenko, B. Scott Perrin, Yuao Zhu, Rhonda Cardin, et al. (+4)
25 [GO] Journal of Virology 2022―Jul―13 Shared N417-Dependent Epitope on the SARS-CoV-2 Omicron, Beta, and Delta Plus Variants Thandeka Moyo-Gwete, Mashudu Madzivhandila, Nonhlanhla N. Mkhize, Prudence Kgagudi, Frances Ayres, Bronwen E. Lambson, et al. (+13)
26 [GO] Microbiology Spectrum 2022―Jul―13 Avoiding False-Positive SARS-CoV-2 Rapid Antigen Test Results with Point-of-Care Molecular Testing on Residual Test Buffer Jason J. LeBlanc, Gregory R. McCracken, Barbara Goodall, Todd F. Hatchette, Lisa Barrett, John Ross, et al. (+3)
27 [GO] Antimicrobial Agents and Chemotherapy 2022―Jul―12 New Perspectives on Antimicrobial Agents: Molnupiravir and Nirmatrelvir/Ritonavir for Treatment of COVID-19 Robert L. Atmar, Natalie Finch
28 [GO] Microbiology Spectrum 2022―Jul―12 Performance of 22 Rapid Lateral Flow Tests for SARS-CoV-2 Antigen Detection and Influence of “Variants of Concern”: Implications for Clinical Use Aurélie Gourgeon, Alexandre Soulier, Étienne Audureau, Souraya Khouider, Arnaud Galbin, Camille Langlois, et al. (+6)
29 [GO] Journal of Virology 2022―Jul―12 A Virion-Based Combination Vaccine Protects against Influenza and SARS-CoV-2 Disease in Mice Ryan R. Chaparian, Alfred T. Harding, Cait E. Hamele, Kristina Riebe, Amelia Karlsson, Gregory D. Sempowski, et al. (+3)
30 [GO] Journal of Virology 2022―Jul―12 Persistent Maintenance of Intermediate Memory B Cells Following SARS-CoV-2 Infection and Vaccination Recall Response Jernej Pušnik, Julia König, Karola Mai, Enrico Richter, Jasmin Zorn, Hannah Proksch, et al. (+4)
31 [GO] mSphere 2022―Jul―12 Angiotensin-Converting Enzyme 2 Potentiates SARS-CoV-2 Infection by Antagonizing Type I Interferon Induction and Its Down-Stream Signaling Pathway Jian Chen, Jian Liu, Zhilu Chen, Haoran Peng, Cuisong Zhu, Daobin Feng, et al. (+5)
32 [GO] Journal of Virology 2022―Jul―12 The Host Response to Influenza A Virus Interferes with SARS-CoV-2 Replication during Coinfection Kohei Oishi, Shu Horiuchi, Judith M. Minkoff, Benjamin R. tenOever, Mark T. Heise
33 [GO] Microbiology Resource Announcements 2022―Jul―11 Co-circulation of Multiple SARS-CoV-2 Variants of Concern in Dhaka, Bangladesh, during the Second Wave of the COVID-19 Pandemic M. Abdullah Omar Nasif, Nahida Sultana, Raad Rahmat, Tahmina Akther, Afzalun Nessa, Munira Jahan, Simon Roux
34 [GO] Microbiology Spectrum 2022―Jul―11 Human ACE2 Genetic Polymorphism Affecting SARS-CoV and SARS-CoV-2 Entry into Cells Takanari Hattori, Takeshi Saito, Kosuke Okuya, Yuji Takahashi, Hiroko Miyamoto, Masahiro Kajihara, et al. (+3)
35 [GO] Applied and Environmental Microbiology 2022―Jul―11 Comparison of Surface Persistence of SARS-CoV-2 Alpha and Delta Variants on Stainless Steel at 4°C and 24°C Okechukwu Onianwa, Isobel Garratt, Jennifer Carter, Antony Spencer, Neville Q. Verlander, Thomas Pottage, et al. (+2)
36 [GO] Journal of Virology 2022―Jul―11 Evaluation of the Deletion of MGF110-5L-6L on Swine Virulence from the Pandemic Strain of African Swine Fever Virus and Use as a DIVA Marker in Vaccine Candidate ASFV-G-ΔI177L Elizabeth Ramirez-Medina, Elizabeth Vuono, Ediane Silva, Ayushi Rai, Alyssa Valladares, Sarah Pruitt, et al. (+5)
37 [GO] Microbiology and Molecular Biology Reviews 2022―Jul―07 Lessons Learned and Yet-to-Be Learned on the Importance of RNA Structure in SARS-CoV-2 Replication Maclean Bassett, Marco Salemi, Brittany Rife Magalis
38 [GO] Microbiology Spectrum 2022―Jul―06 Symptomatic and Asymptomatic Transmission of SARS-CoV-2 in K-12 Schools, British Columbia, Canada April to June 2021 Alexandra Choi, Louise C. Mâsse, Samantha Bardwell, Iryna Kayda, Yanjie Zhao, Yang Xin Zi Xu, et al. (+10)
39 [GO] Microbiology Spectrum 2022―Jul―06 RG203KR Mutations in SARS-CoV-2 Nucleocapsid: Assessing the Impact Using a Virus-Like Particle Model System Harsha Raheja, Soma Das, Anindita Banerjee, Dikshaya P., Deepika C., Debanjan Mukhopadhyay, et al. (+3)
40 [GO] Journal of Virology 2022―Jul―06 Deletion of the H108R Gene Reduces Virulence of the Pandemic Eurasia Strain of African Swine Fever Virus with Surviving Animals Being Protected against Virulent Challenge Elizabeth Vuono, Elizabeth Ramirez-Medina, Ediane Silva, Ayushi Rai, Sarah Pruitt, Nallely Espinoza, et al. (+5)
41 [GO] Microbiology Spectrum 2022―Jul―05 Limited Correlation between SARS-CoV-2 Serologic Assays for Identification of High-Titer COVID-19 Convalescent Plasma Using FDA Thresholds Nicholas E. Larkey, Radwa Ewaisha, Michael A. Lasho, Matthew M. Roforth, Dane Granger, Calvin R. Jerde, et al. (+9)
42 [GO] Microbiology Spectrum 2022―Jul―05 Concerns Regarding Validity of the Use of Bean Extract-Based Gargle for COVID-19 Diagnosis Ki Ho Hong, Heungsup Sung, Daniel R. Perez
43 [GO] Microbiology Spectrum 2022―Jul―05 Author’s Reply to “Concerns regarding Validity of the Use of Bean Extract-Based Gargle for COVID-19 Diagnosis” Joseph Kwon, Euna Ko, Se-Young Cho, Young-Ho Lee, Sangmi Jun, Kyuhong Lee, et al. (+22)
44 [GO] Microbiology Spectrum 2022―Jul―05 Rapid Detection of the Omicron (B.1.1.529) SARS-CoV-2 Variant Using a COVID-19 Diagnostic PCR Assay Chiara Ippoliti, Flavio De Maio, Giulia Santarelli, Simona Marchetti, Antonietta Vella, Rosaria Santangelo, et al. (+3)
45 [GO] Journal of Virology 2022―Jul―05 Engineering and Characterization of Avian Coronavirus Mutants Expressing Fluorescent Reporter Proteins from the Replicase Gene Na Xing, Zhisheng Wang, Jichun Wang, Mariana Nascimento, Anan Jongkaewwattana, Jakob Trimpert, et al. (+3)
46 [GO] mSphere 2022―Jul―05 Impact of Prior Infection on SARS-CoV-2 Antibody Responses in Vaccinated Long-Term Care Facility Staff Emily N. Gallichotte, Mary Nehring, Sophia Stromberg, Michael C. Young, Ashley Snell, Josh Daniels, et al. (+5)
47 [GO] Antimicrobial Agents and Chemotherapy 2022―Jul―05 Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces Delphine Lapaillerie, Cathy Charlier, Véronique Guyonnet-Dupérat, Emilie Murigneux, Henrique S. Fernandes, Fábio G. Martins, et al. (+19)
48 [GO] Journal of Virology 2022―Jul―05 Species-Specific Molecular Barriers to SARS-CoV-2 Replication in Bat Cells Sophie-Marie Aicher, Felix Streicher, Maxime Chazal, Delphine Planas, Dongsheng Luo, Julian Buchrieser, et al. (+13)
49 [GO] Microbiology Spectrum 2022―Jul―05 Decreased Efficiency of Neutralizing Antibodies from Previously Infected or Vaccinated Individuals against the B.1.617.2 (Delta) SARS-CoV-2 Variant Chloé Dimeglio, Fabrice Herin, Isabelle Da-Silva, Caroline Gernigon, Marion Porcheron, Sabine Chapuy-Regaud, et al. (+2)
50 [GO] Microbiology Spectrum 2022―Jun―30 Cross-Species Transmission of Bat Coronaviruses in the Americas: Contrasting Patterns between Alphacoronavirus and Betacoronavirus Diego A. Caraballo, Biao He
51 [GO] Microbiology Spectrum 2022―Jun―30 SARS-CoV-2 Seroconversion in Response to Infection and Vaccination: a Time Series Local Study in Brazil Luciano F. Huergo, Nigella M. Paula, Ana C. A. Gonçalves, Carlos H. S. Kluge, Paulo H. S. A. Marins, Haxley S. C. Camargo, et al. (+12)
52 [GO] Microbiology Spectrum 2022―Jun―29 Molecular Evolution of Porcine Reproductive and Respiratory Syndrome Virus Field Strains from Two Swine Production Systems in the Midwestern United States from 2001 to 2020 Ruwini Rupasinghe, Kyuyoung Lee, Xin Liu, Phillip C. Gauger, Jianqiang Zhang, Beatriz Martínez-López, Yun Young Go
53 [GO] Journal of Clinical Microbiology 2022―Jun―29 COVID-19 Variant Detection with a High-Fidelity CRISPR-Cas12 Enzyme Clare L. Fasching, Venice Servellita, Bridget McKay, Vaishnavi Nagesh, James P. Broughton, Alicia Sotomayor-Gonzalez, et al. (+13)
54 [GO] Journal of Virology 2022―Jun―29 An S1-Nanoparticle Vaccine Protects against SARS-CoV-2 Challenge in K18-hACE2 Mice Linda van Oosten, Kexin Yan, Daniel J. Rawle, Thuy T. Le, Jort J. Altenburg, Cyrielle Fougeroux, et al. (+7)
55 [GO] Microbiology Spectrum 2022―Jun―29 Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda Bailey Lubinski, Laura E. Frazier, My V. T. Phan, Daniel L. Bugembe, Jessie L. Cunningham, Tiffany Tang, et al. (+5)
56 [GO] Journal of Clinical Microbiology 2022―Jun―29 A Method for Variant Agnostic Detection of SARS-CoV-2, Rapid Monitoring of Circulating Variants, and Early Detection of Emergent Variants Such as Omicron Eric Lai, Emily B. Kennedy, Jean Lozach, Kathleen Hayashibara, Jeremy Davis-Turak, David Becker, et al. (+21)
57 [GO] Microbiology Spectrum 2022―Jun―28 Decreased Passive Immunity to Respiratory Viruses through Human Milk during the COVID-19 Pandemic Marloes Grobben, Hannah G. Juncker, Karlijn van der Straten, A. H. Ayesha Lavell, Michiel Schinkel, David T. P. Buis, et al. (+12)
58 [GO] Journal of Virology 2022―Jun―28 Long-Term Expanding Porcine Airway Organoids Provide Insights into the Pathogenesis and Innate Immunity of Porcine Respiratory Coronavirus Infection Chengfan Jiang, Liang Li, Mei Xue, Liyuan Zhao, Xiang Liu, Wenzhe Wang, et al. (+3)
59 [GO] mBio 2022―Jun―28 The Kinetics of SARS-CoV-2 Antibody Development Is Associated with Clearance of RNAemia Chuangqi Wang, Yijia Li, Paulina Kaplonek, Matteo Gentili, Stephanie Fischinger, Kathryn A. Bowman, et al. (+11)
60 [GO] Microbiology Spectrum 2022―Jun―28 Investigating the Sensitivity of Nasal or Throat Swabs: Combination of Both Swabs Increases the Sensitivity of SARS-CoV-2 Rapid Antigen Tests Barbara L. Goodall, Jason J. LeBlanc, Todd F. Hatchette, Lisa Barrett, Glenn Patriquin, Rebekah M. Martin
61 [GO] Microbiology Spectrum 2022―Jun―27 BRET-Based Self-Cleaving Biosensors for SARS-CoV-2 3CLpro Inhibitor Discovery Ningke Hou, Chen Peng, Lijing Zhang, Yuyao Zhu, Qi Hu, Marlene Dreux
62 [GO] Journal of Virology 2022―Jun―27 Using Species a Rotavirus Reverse Genetics to Engineer Chimeric Viruses Expressing SARS-CoV-2 Spike Epitopes Ola Diebold, Victoria Gonzalez, Luca Venditti, Colin Sharp, Rosemary A. Blake, Wenfang S. Tan, et al. (+6)
63 [GO] Microbiology Spectrum 2022―Jun―27 Identification of SARS-CoV-2 Variants of Concern Using Amplicon Next-Generation Sequencing Abdelmajeed Nasereddin, Hadar Golan Berman, Dana G. Wolf, Esther Oiknine-Djian, Sheera Adar, Michael Klutstein
64 [GO] Microbiology Spectrum 2022―Jun―27 Construction of a Porcine Reproductive and Respiratory Syndrome Virus with Nanoluc Luciferase Reporter: a Stable and Highly Efficient Tool for Viral Quantification Both In Vitro and In Vivo Yang Wang, Xinna Ge, Yongning Zhang, Xin Guo, Jun Han, Lei Zhou, et al. (+2)
65 [GO] Journal of Virology 2022―Jun―23 Novel Engineered SARS-CoV-2 HR1 Trimer Exhibits Improved Potency and Broad-Spectrum Activity against SARS-CoV-2 and Its Variants Wenwen Bi, Guilin Chen, Bobo Dang, Tom Gallagher
66 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―23 Characterizing SARS-CoV-2 Viral Clearance Kinetics to Improve the Design of Antiviral Pharmacometric Studies James A. Watson, Stephen M. Kissler, Nicholas P. J. Day, Yonatan H. Grad, Nicholas J. White
67 [GO] mBio 2022―Jun―23 Antibody and Memory B-Cell Immunity in a Heterogeneously SARS-CoV-2-Infected and -Vaccinated Population Eva Bednarski, Perla M. Del Rio Estrada, Justin DaSilva, Celia Boukadida, Fengwen Zhang, Yara A. Luna-Villalobos, et al. (+19)
68 [GO] Journal of Clinical Microbiology 2022―Jun―22 Limitations of Molecular and Antigen Test Performance for SARS-CoV-2 in Symptomatic and Asymptomatic COVID-19 Contacts Matthew L. Robinson, Agha Mirza, Nicholas Gallagher, Alec Boudreau, Lydia Garcia Jacinto, Tong Yu, et al. (+12)
69 [GO] Microbiology Spectrum 2022―Jun―22 Impact of Fast SARS-CoV-2 Molecular Point-Of-Care Testing on Patients’ Length of Stay in an Emergency Department Audrey Baron, Olivier Peyrony, Maud Salmona, Nadia Mahjoub, Sami Ellouze, Maud Anastassiou, et al. (+6)
70 [GO] Microbiology Spectrum 2022―Jun―22 Expression Profile and Localization of SARS-CoV-2 Nonstructural Replicase Proteins in Infected Cells Fang-Shu Shi, Yin Yu, Ya-Li Li, Lilan Cui, Zhuangzhuang Zhao, Mi Wang, et al. (+4)
71 [GO] Microbiology Spectrum 2022―Jun―22 Correction for Valcourt et al., “Evaluating Humoral Immunity against SARS-CoV-2: Validation of a Plaque-Reduction Neutralization Test and a Multilaboratory Comparison of Conventional and Surrogate Neutralization Assays” Emelissa J. Valcourt, Kathy Manguiat, Alyssia Robinson, Yi-Chan Lin, Kento T. Abe, Samira Mubarek, et al. (+25)
72 [GO] mBio 2022―Jun―21 Microbiome Analysis for Wastewater Surveillance during COVID-19 Kyle D. Brumfield, Menu Leddy, Moiz Usmani, Joseph A. Cotruvo, Ching-Tzone Tien, Suzanne Dorsey, et al. (+13)
73 [GO] Journal of Virology 2022―Jun―21 The Cellular Characterization of SARS-CoV-2 Spike Protein in Virus-Infected Cells Using the Receptor Binding Domain Binding Specific Human Monoclonal Antibodies Conrad En-Zuo Chan, Ching-Ging Ng, Angeline Pei-Chew Lim, Shirley Lay-Kheng Seah, De-Hoe Chye, Steven Ka-Khuen Wong, et al. (+9)
74 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―16 In Vitro Selection of Remdesivir-Resistant SARS-CoV-2 Demonstrates High Barrier to Resistance Liva Checkmahomed, Julie Carbonneau, Venice Du Pont, Nicholas C. Riola, Jason K. Perry, Jiani Li, et al. (+5)
75 [GO] mBio 2022―Jun―16 Metalloproteinase-Dependent and TMPRSS2-Independent Cell Surface Entry Pathway of SARS-CoV-2 Requires the Furin Cleavage Site and the S2 Domain of Spike Protein Mizuki Yamamoto, Jin Gohda, Ayako Kobayashi, Keiko Tomita, Youko Hirayama, Naohiko Koshikawa, et al. (+6)
76 [GO] Microbiology Spectrum 2022―Jun―16 Multiplex Target-Redundant RT-LAMP for Robust Detection of SARS-CoV-2 Using Fluorescent Universal Displacement Probes Enos C. Kline, Nuttada Panpradist, Ian T. Hull, Qin Wang, Amy K. Oreskovic, Peter D. Han, et al. (+3)
77 [GO] mSphere 2022―Jun―15 The Serological Sciences Network (SeroNet) for COVID-19: Depth and Breadth of Serology Assays and Plans for Assay Harmonization Amy B. Karger, James D. Brien, Jayne M. Christen, Santosh Dhakal, Troy J. Kemp, Sabra L. Klein, et al. (+54)
78 [GO] Microbiology Spectrum 2022―Jun―15 Anti-Spike Antibody Response to Natural Infection with SARS-CoV-2 and Its Activity against Emerging Variants Cheng-Pin Chen, Kuan-Ying A. Huang, Shin-Ru Shih, Yi-Chun Lin, Chien-Yu Cheng, Yhu-Chering Huang, et al. (+3)
79 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―15 Dual Inhibition of Vacuolar-ATPase and TMPRSS2 Is Required for Complete Blockade of SARS-CoV-2 Entry into Cells Simoun Icho, Edurne Rujas, Krithika Muthuraman, John Tam, Huazhu Liang, Shelby Landreth, et al. (+4)
80 [GO] mSystems 2022―Jun―15 Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings Victor J. Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, et al. (+30)
81 [GO] mSystems 2022―Jun―15 Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings Victor J. Cantú, Pedro Belda-Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, William Jordan, et al. (+32)
82 [GO] Microbiology Spectrum 2022―Jun―14 Evaluation of Diagnostic Strategies for Identifying SARS-CoV-2 Infection in Clinical Practice: a Systematic Review and Compliance with the Standards for Reporting Diagnostic Accuracy Studies Guideline (STARD) Paula Cremades-Martínez, Lucy A. Parker, Elisa Chilet-Rosell, Blanca Lumbreras, Tulip A. Jhaveri
83 [GO] Microbiology Spectrum 2022―Jun―14 Susceptibility of SARS-CoV-2 Omicron Variants to Therapeutic Monoclonal Antibodies: Systematic Review and Meta-analysis Kaiming Tao, Philip L. Tzou, Sergei L. Kosakovsky Pond, John P. A. Ioannidis, Robert W. Shafer, Takamasa Ueno
84 [GO] Journal of Virology 2022―Jun―14 Induction of Broadly Cross-Reactive Antibody Responses to SARS-CoV-2 Variants by S1 Nanoparticle Vaccines Cong Sun, Run-Yu Yuan, Chu Xie, Jiu-Feng Sun, Xin-Yan Fang, Yi-Sha Hu, et al. (+5)
85 [GO] Journal of Virology 2022―Jun―14 Longitudinal Assessment of SARS-CoV-2-Specific T Cell Cytokine-Producing Responses for 1 Year Reveals Persistence of Multicytokine Proliferative Responses, with Greater Immunity Associated with Disease Severity Jonah Lin, Ryan Law, Chapin S. Korosec, Christine Zhou, Wan Hon Koh, Mohammad Sajjad Ghaemi, et al. (+17)
86 [GO] Microbiology Spectrum 2022―Jun―13 Rapid Detection of Bacterial and Fungal Pathogens Using the T2MR versus Blood Culture in Patients with Severe COVID-19 Tamara Seitz, Johannes Holbik, Julian Hind, Georg Gibas, Mario Karolyi, Erich Pawelka, et al. (+4)
87 [GO] mBio 2022―Jun―13 Potency of Fusion-Inhibitory Lipopeptides against SARS-CoV-2 Variants of Concern Katharina S. Schmitz, Daryl Geers, Rory D. de Vries, T. Francesca Bovier, Anna Z. Mykytyn, Corine H. Geurts van Kessel, et al. (+5)
88 [GO] Journal of Virology 2022―Jun―09 SARS-CoV-2 Spike Furin Cleavage Site and S2′ Basic Residues Modulate the Entry Process in a Host Cell-Dependent Manner Muriel Lavie, Jean Dubuisson, Sandrine Belouzard, Tom Gallagher
89 [GO] Microbiology Resource Announcements 2022―Jun―08 Gut Microbiome 16S rRNA Gene Amplicon Taxonomic Profiling of Hospitalized Moroccan COVID-19 Patients Sofia Sehli, Abdellah Idrissi Azami, Nouzha Dini, Nihal Habib, Bouchra Chaouni, Salsabil Hamdi, et al. (+6)
90 [GO] Journal of Virology 2022―Jun―08 A So-Far Overlooked Secondary Conformation State in the Binding Mode of SARS-CoV-2 Spike Protein to Human ACE2 and Its Conversion Rate Are Crucial for Estimating Infectivity Efficacy of the Underlying Virus Variant Marc Sevenich, Joop van den Heuvel, Ian Gering, Jeannine Mohrlüder, Dieter Willbold, Tom Gallagher
91 [GO] Applied and Environmental Microbiology 2022―Jun―07 Persistence of Coronavirus Surrogates on Meat and Fish Products during Long-Term Storage Emily S. Bailey, Marina Curcic, Mark D. Sobsey, Nicole R. Buan
92 [GO] Journal of Microbiology and Biology Education 2022―Jun―06 An Upper-Division, Remote Microbiology Laboratory That Blends Virtual and Hands-on Components to Promote Student Success during the COVID-19 Pandemic Candace Guzman-Cole, Marcos E. García-Ojeda, Jennifer Herzog
93 [GO] Journal of Clinical Microbiology 2022―Jun―06 The Hidden Crisis in the Times of COVID-19: Critical Shortages of Medical Laboratory Professionals in Clinical Microbiology Amy L. Leber, Ellena Peterson, Jennifer Dien Bard, Romney M. Humphries
94 [GO] Microbiology Spectrum 2022―Jun―06 Insertion-and-Deletion Mutations between the Genomes of SARS-CoV, SARS-CoV-2, and Bat Coronavirus RaTG13 Tetsuya Akaishi, Maria Grazia Cusi
95 [GO] Microbiology Spectrum 2022―Jun―06 Detection and Stability of SARS-CoV-2 in Three Self-Collected Specimen Types: Flocked Midturbinate Swab (MTS) in Viral Transport Media, Foam MTS, and Saliva Vic Veguilla, Ashley L. Fowlkes, Adam Bissonnette, Shawn Beitel, Manjusha Gaglani, Christina A. Porucznik, et al. (+22)
96 [GO] Journal of Virology 2022―Jun―06 Erratum for Essalmani et al., “Distinctive Roles of Furin and TMPRSS2 in SARS-CoV-2 Infectivity” Rachid Essalmani, Jaspreet Jain, Delia Susan-Resiga, Ursula Andréo, Alexandra Evagelidis, Rabeb Mouna Derbali, et al. (+12)
97 [GO] Journal of Clinical Microbiology 2022―Jun―06 Considerations regarding Interpretation of Positive SARS-CoV-2 Molecular Results with Late Cycle Threshold Values Stephanie L. Mitchell, Michael J. Loeffelholz, Romney M. Humphries
98 [GO] Clinical Microbiology Reviews 2022―Jun―06 Sensitivity to Vaccines, Therapeutic Antibodies, and Viral Entry Inhibitors and Advances To Counter the SARS-CoV-2 Omicron Variant Hao Zhou, Michelle Møhlenberg, Jigarji C. Thakor, Hardeep Singh Tuli, Pengfei Wang, Yehuda G. Assaraf, et al. (+2)
99 [GO] Microbiology Spectrum 2022―Jun―06 Trivalent NDV-HXP-S Vaccine Protects against Phylogenetically Distant SARS-CoV-2 Variants of Concern in Mice Irene González-Domínguez, Jose Luis Martínez, Stefan Slamanig, Nicholas Lemus, Yonghong Liu, Tsoi Ying Lai, et al. (+12)
100 [GO] Microbiology Spectrum 2022―Jun―02 Evaluation of the Panbio COVID-19 Antigen Rapid Diagnostic Test in Subjects Infected with Omicron Using Different Specimens Rafael Mello Galliez, Larissa Bomfim, Diana Mariani, Isabela de Carvalho Leitão, Anna Carla Pinto Castiñeiras, Cassia Cristina Alves Gonçalves, et al. (+13)
101 [GO] Microbiology Spectrum 2022―Jun―02 A Qualitative Comparison of the Abbott SARS-CoV-2 IgG II Quant Assay against Commonly Used Canadian SARS-CoV-2 Enzyme Immunoassays in Blood Donor Retention Specimens, April 2020 to March 2021 Kento T. Abe, Bhavisha Rathod, Karen Colwill, Anne-Claude Gingras, Ashleigh Tuite, Ninette F. Robbins, et al. (+7)
102 [GO] Journal of Virology 2022―Jun―02 SARS-CoV-2 N Protein Antagonizes Stress Granule Assembly and IFN Production by Interacting with G3BPs to Facilitate Viral Replication Hainan Liu, Yu Bai, Xun Zhang, Ting Gao, Yue Liu, Entao Li, et al. (+17)
103 [GO] Journal of Clinical Microbiology 2022―Jun―01 Bacterial Pneumonia and Respiratory Culture Utilization among Hospitalized Patients with and without COVID-19 in a New York City Hospital Maxwell D. Weidmann, Gregory J. Berry, Jason E. Zucker, Simian Huang, Magdalena E. Sobieszczyk, Daniel A. Green, Melissa B. Miller
104 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―01 Population Pharmacokinetics of Remdesivir and GS-441524 in Hospitalized COVID-19 Patients E. Leegwater, D. J. A. R. Moes, L. B. E. Bosma, T. H. Ottens, I. M. van der Meer, C. van Nieuwkoop, E. B. Wilms
105 [GO] Microbiology Spectrum 2022―Jun―01 Evaluation of a Multiplex Bead Assay against Single-Target Assays for Detection of IgG Antibodies to SARS-CoV-2 Kaitlin F. Mitchell, Christina M. Carlson, Douglas Nace, Brian S. Wakeman, Jan Drobeniuc, Glenn P. Niemeyer, et al. (+7)
106 [GO] Journal of Clinical Microbiology 2022―Jun―01 Development of a Rapid Live SARS-CoV-2 Neutralization Assay Based on a qPCR Readout Sabine Lichtenegger, Sabine Saiger, Melina Hardt, Susanne Kulnik, Gabriel E. Wagner, Barbara Kleinhappl, et al. (+8)
107 [GO] Microbiology Resource Announcements 2022―May―31 Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic Munira Jahan, M. Abdullah Omar Nasif, Raad Rahmat, SM Rashed Ul Islam, Saif Ullah Munshi, M. Sharfuddin Ahmed, Simon Roux
108 [GO] mSystems 2022―May―31 Obesity: Policy and Practice Recommendations for High-Risk Populations Influenced by the COVID-19 Pandemic Kathryn N. Robinson, Deborah A. Saber, Suzanne Lynn Ishaq
109 [GO] Microbiology Spectrum 2022―May―31 Utility of Serum 1,3-β- d -Glucan Testing for Diagnosis and Prognostication in COVID-19-Associated Pulmonary Aspergillosis Matthias Egger, Florian Prüller, Robert Krause, Juergen Prattes, Martin Hoenigl, Gustavo H. Goldman
110 [GO] Microbiology Spectrum 2022―May―31 A Look inside the Replication Dynamics of SARS-CoV-2 in Blyth’s Horseshoe Bat ( Rhinolophus lepidus ) Kidney Cells Heidi Auerswald, Dolyce H. W. Low, Jurre Y. Siegers, Teyputita Ou, Sonita Kol, Saraden In, et al. (+7)
111 [GO] Microbiology Spectrum 2022―May―31 Impact of the SARS-CoV-2 Pandemic on the Prevalence and Incidence of Gastrointestinal Viruses in Children up to Five Years Old: a Retrospective Cohort Study Alfredo Maldonado-Barrueco, Julio García-Rodríguez, Jorge Yániz-Ramirez, Irene Serrano-Vaquero, Juan Carlos Parra-Alonso, Carlos Vega-Nieto, et al. (+2)
112 [GO] Microbiology Spectrum 2022―May―31 Receptor-Binding-Motif-Targeted Sanger Sequencing: a Quick and Cost-Effective Strategy for Molecular Surveillance of SARS-CoV-2 Variants Sankar Prasad Chaki, Melissa M. Kahl-McDonagh, Benjamin W. Neuman, Kurt A. Zuelke, Prabagaran Narayanasamy
113 [GO] Microbiology Resource Announcements 2022―May―31 Metagenomics of Wastewater Influent from Wastewater Treatment Facilities across Ontario in the Era of Emerging SARS-CoV-2 Variants of Concern Opeyemi U. Lawal, Linkang Zhang, Valeria R. Parreira, R. Stephen Brown, Charles Chettleburgh, Nora Dannah, et al. (+16)
114 [GO] Microbiology Spectrum 2022―May―31 Effects of Spike Mutations in SARS-CoV-2 Variants of Concern on Human or Animal ACE2-Mediated Virus Entry and Neutralization Yunjeong Kim, Natasha N. Gaudreault, David A. Meekins, Krishani D. Perera, Dashzeveg Bold, Jessie D. Trujillo, et al. (+5)
115 [GO] mBio 2022―May―31 The Deubiquitinase USP29 Promotes SARS-CoV-2 Virulence by Preventing Proteasome Degradation of ORF9b Wenying Gao, Liuli Wang, Xiaohui Ju, Simin Zhao, Zhaolong Li, Manman Su, et al. (+6)
116 [GO] Microbiology Spectrum 2022―May―26 Evaluation of Four Point of Care (POC) Antigen Assays for the Detection of the SARS-CoV-2 Variant Omicron Justin Hardick, Nicholas Gallagher, Jaiprasath Sachithanandham, Amary Fall, Zishan Siddiqui, Andrew Pekosz, et al. (+3)
117 [GO] Microbiology Spectrum 2022―May―25 Development and Implementation of Dried Blood Spot-Based COVID-19 Serological Assays for Epidemiologic Studies Marcus P. Wong, Michelle A. Meas, Cameron Adams, Samantha Hernandez, Valerie Green, Magelda Montoya, et al. (+20)
118 [GO] Microbiology Spectrum 2022―May―23 Detectable Duration of Viable SARS-CoV-2, Total and Subgenomic SARS-CoV-2 RNA in Noncritically Ill COVID-19 Patients: a Prospective Cohort Study Angsana Phuphuakrat, Ekawat Pasomsub, Sirawat Srichatrapimuk, Suppachok Kirdlarp, Ampa Suksatu, Chanya Srisaowakarn, et al. (+11)
119 [GO] mBio 2022―May―23 The Translational Landscape of SARS-CoV-2-infected Cells Reveals Suppression of Innate Immune Genes Maritza Puray-Chavez, Nakyung Lee, Kasyap Tenneti, Yiqing Wang, Hung R. Vuong, Yating Liu, et al. (+10)
120 [GO] mBio 2022―May―19 Circulatory Exosomes from COVID-19 Patients Trigger NLRP3 Inflammasome in Endothelial Cells Subhayan Sur, Robert Steele, T. Scott Isbell, Ranjit Ray, Ratna B. Ray, Andrea L. Cox, Diane E. Griffin
121 [GO] mSphere 2022―May―19 PARIS and SPARTA: Finding the Achilles’ Heel of SARS-CoV-2 Viviana Simon, Vamsi Kota, Ryan F. Bloomquist, Hannah B. Hanley, David Forgacs, Savita Pahwa, et al. (+22)
122 [GO] mSphere 2022―May―19 Ethnoracial Disparities in SARS-CoV-2 Seroprevalence in a Large Cohort of Individuals in Central North Carolina from April to December 2020 Cesar A. Lopez, Clark H. Cunningham, Sierra Pugh, Katerina Brandt, Usaphea P. Vanna, Matthew J. Delacruz, et al. (+23)
123 [GO] Journal of Virology 2022―May―19 Effective Interferon Lambda Treatment Regimen To Control Lethal MERS-CoV Infection in Mice Ronald Dijkman, Abhishek Kumar Verma, Muneeswaran Selvaraj, Roshan Ghimire, Hans Henrik Gad, Rune Hartmann, et al. (+5)
124 [GO] Journal of Virology 2022―May―19 The 2009 Pandemic H1N1 Hemagglutinin Stalk Remained Antigenically Stable after Circulating in Humans for a Decade Shannon R. Christensen, Emily T. Martin, Joshua G. Petrie, Arnold S. Monto, Scott E. Hensley, Kanta Subbarao
125 [GO] mSystems 2022―May―18 Stability of SARS-CoV-2-Encoded Proteins and Their Antibody Levels Correlate with Interleukin 6 in COVID-19 Patients Wangyang Li, Georgios D. Kitsios, William Bain, Chenxiao Wang, Tiao Li, Kristen V. Fanning, et al. (+6)
126 [GO] Microbiology Spectrum 2022―May―18 Tracheal Aspirate and Bronchoalveolar Lavage as Potential Specimen Types for COVID-19 Testing Using the Cepheid Xpert Xpress SARS-CoV-2/Flu/RSV Sang Ho Kim, Fatimah AlMutawa, William Lainhart
127 [GO] mSystems 2022―May―18 Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants Yiyan Yang, Keith Dufault-Thompson, Rafaela Salgado Fontenele, Xiaofang Jiang, Sergio Baranzini
128 [GO] Microbiology Spectrum 2022―May―17 Evaluating the Ability to ID (COVID-19) NOW: a Large Real-World Prospective Evaluation of the Abbott ID NOW COVID-19 Assay K. R. Barker, L. N. Small, D. V. Thai, K. Y. Sohn, L. C. Rosella, Karen C. Carroll
129 [GO] Microbiology Spectrum 2022―May―17 Increased Abundance of Achromobacter xylosoxidans and Bacillus cereus in Upper Airway Transcriptionally Active Microbiome of COVID-19 Mortality Patients Indicates Role of Co-Infections in Disease Severity and Outcome Priti Devi, Ranjeet Maurya, Priyanka Mehta, Uzma Shamim, Aanchal Yadav, Partha Chattopadhyay, et al. (+11)
130 [GO] Microbiology Spectrum 2022―May―17 Super Dominant Pathobiontic Bacteria in the Nasopharyngeal Microbiota Cause Secondary Bacterial Infection in COVID-19 Patients Tian Qin, Yajie Wang, Jianping Deng, BaoHong Xu, Xiong Zhu, Jitao Wang, et al. (+20)
131 [GO] Journal of Microbiology and Biology Education 2022―May―16 A CURE for the COVID-19 Era: A Vaccine-Focused Online Immunology Laboratory Srishti Baid, P. Scott Hefty, Dyan E. Morgan, Veronica A. Segarra
132 [GO] mSystems 2022―May―16 SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp. Victor J. Cantú, Rodolfo A. Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, et al. (+35)
133 [GO] Microbiology Spectrum 2022―May―16 Viral RNA Load and Infectivity of SARS-CoV-2 in Paired Respiratory and Oral Specimens from Symptomatic, Asymptomatic, or Postsymptomatic Individuals Rebecca L. Tallmadge, Melissa Laverack, Brittany Cronk, Roopa Venugopalan, Mathias Martins, XiuLin Zhang, et al. (+4)
134 [GO] Microbiology Spectrum 2022―May―16 Evaluation of the Roche SARS-CoV-2 Rapid Antibody Test in Samples from Vaccinated Individuals Johannes Hayer, Eva Urlaub, Kileen L. Shier
135 [GO] Microbiology Spectrum 2022―May―12 Identifying SARS-CoV-2 Variants of Concern through Saliva-Based RT-qPCR by Targeting Recurrent Mutation Sites Rachel E. Ham, Austin R. Smothers, Rui Che, Keegan J. Sell, Congyue Annie Peng, Delphine Dean, Heba H. Mostafa
136 [GO] Microbiology Spectrum 2022―May―11 Emergence of SARS-CoV-2 Spike Mutations during Prolonged Infection in Immunocompromised Hosts Karrie K. K. Ko, Hatairat Yingtaweesittikul, Thuan Tong Tan, Limin Wijaya, Delphine Yanhong Cao, Sui Sin Goh, et al. (+9)
137 [GO] Journal of Virology 2022―May―11 SARS-CoV-2 Variants of Concern Hijack IFITM2 for Efficient Replication in Human Lung Cells Rayhane Nchioua, Annika Schundner, Dorota Kmiec, Caterina Prelli Bozzo, Fabian Zech, Lennart Koepke, et al. (+7)
138 [GO] mBio 2022―May―09 Serine Protease Inhibitors Restrict Host Susceptibility to SARS-CoV-2 Infections Ebba Rosendal, Ionut Sebastian Mihai, Miriam Becker, Debojyoti Das, Lars Frängsmyr, B. David Persson, et al. (+10)
139 [GO] Antimicrobial Agents and Chemotherapy 2022―May―09 Remdesivir and GS-441524 Retain Antiviral Activity against Delta, Omicron, and Other Emergent SARS-CoV-2 Variants Jared Pitts, Jiani Li, Jason K. Perry, Venice Du Pont, Nicholas Riola, Lauren Rodriguez, et al. (+12)
140 [GO] Microbiology Spectrum 2022―May―05 SARS-CoV-2 Infection of Microglia Elicits Proinflammatory Activation and Apoptotic Cell Death Gi Uk Jeong, Jaemyun Lyu, Kyun-Do Kim, Young Cheul Chung, Gun Young Yoon, Sumin Lee, et al. (+6)
141 [GO] Microbiology Spectrum 2022―May―04 Virucidal Properties of Photocatalytic Coating on Glass against a Model Human Coronavirus Ángel L. Álvarez, Kevin P. Dalton, Inés Nicieza, Fabio A. Abade Dos Santos, Pilar de la Peña, Pedro Domínguez, et al. (+3)
142 [GO] mSphere 2022―May―02 Analysis of SARS-CoV-2 in Nasopharyngeal Samples from Patients with COVID-19 Illustrates Population Variation and Diverse Phenotypes, Placing the Growth Properties of Variants of Concern in Context with Other Lineages Tessa Prince, Xiaofeng Dong, Rebekah Penrice-Randal, Nadine Randle, Catherine Hartley, Hannah Goldswain, et al. (+14)
143 [GO] Microbiology Spectrum 2022―May―02 A CLEIA Antigen Assay in Diagnosis and Follow-Up of SARS-CoV-2-Positive Subjects Salvatore Scarcella, Azzurra Rizzelli, Andrea Fontana, Chiara Zecca, Giancarlo Pasanisi, Katia Musio, et al. (+7)
144 [GO] Microbiology Spectrum 2022―Apr―28 Serological Follow-Up Study Indicates High Seasonal Coronavirus Infection and Reinfection Rates in Early Childhood Pekka Kolehmainen, Jemna Heroum, Pinja Jalkanen, Moona Huttunen, Laura Toivonen, Varpu Marjomäki, et al. (+7)
145 [GO] mBio 2022―Apr―27 Status of Humoral and Cellular Immune Responses within 12 Months following CoronaVac Vaccination against COVID-19 Wei Zhao, Weixin Chen, Juan Li, Meng Chen, Qin Li, Min Lv, et al. (+9)
146 [GO] mBio 2022―Apr―26 Gain-of-Signal Assays for Probing Inhibition of SARS-CoV-2 M pro /3CL pro in Living Cells Seyed Arad Moghadasi, Morgan A. Esler, Yuka Otsuka, Jordan T. Becker, Sofia N. Moraes, Constance B. Anderson, et al. (+12)
147 [GO] Microbiology Spectrum 2022―Apr―26 Screening of the Pandemic Response Box Reveals an Association between Antifungal Effects of MMV1593537 and the Cell Wall of Cryptococcus neoformans , Cryptococcus deuterogattii , and Candida auris Haroldo C. de Oliveira, Rafael F. Castelli, Flavia C. G. Reis, Kirandeep Samby, Joshua D. Nosanchuk, Lysangela R. Alves, et al. (+2)
148 [GO] Microbiology Spectrum 2022―Apr―25 Interepidemic Respiratory Syncytial Virus during the COVID-19 Pandemic ChunHong Huang, Malaya K. Sahoo, Michelle Verghese, Mamdouh Sibai, Daniel Solis, Kenji O. Mfuh, et al. (+5)
149 [GO] mBio 2022―Apr―25 Evidence for an ACE2-Independent Entry Pathway That Can Protect from Neutralization by an Antibody Used for COVID-19 Therapy Markus Hoffmann, Anzhalika Sidarovich, Prerna Arora, Nadine Krüger, Inga Nehlmeier, Amy Kempf, et al. (+9)
150 [GO] mBio 2022―Apr―25 Epidemiology and Genomic Characterization of Two Novel SARS-Related Coronaviruses in Horseshoe Bats from Guangdong, China Linmiao Li, Libiao Zhang, Jiabin Zhou, Xiangyang He, Yepin Yu, Ping Liu, et al. (+4)
151 [GO] mBio 2022―Apr―25 Structure of a Vaccine-Induced, Germline-Encoded Human Antibody Defines a Neutralizing Epitope on the SARS-CoV-2 Spike N-Terminal Domain Clara G. Altomare, Daniel C. Adelsberg, Juan Manuel Carreno, Iden A. Sapse, Fatima Amanat, Ali H. Ellebedy, et al. (+4)
152 [GO] mBio 2022―Apr―25 Porcine Reproductive and Respiratory Syndrome Virus Adapts Antiviral Innate Immunity via Manipulating MALT1 Han Gu, Suya Zheng, Guangwei Han, Haotian Yang, Zhuofan Deng, Zehui Liu, et al. (+2)
153 [GO] Journal of Clinical Microbiology 2022―Apr―25 Evaluation of a Rapid and Accessible Reverse Transcription-Quantitative PCR Approach for SARS-CoV-2 Variant of Concern Identification Priscilla S.-W. Yeung, Hannah Wang, Mamdouh Sibai, Daniel Solis, Fumiko Yamamoto, Naomi Iwai, et al. (+14)
154 [GO] Journal of Clinical Microbiology 2022―Apr―20 Limit of Detection for Rapid Antigen Testing of the SARS-CoV-2 Omicron and Delta Variants of Concern Using Live-Virus Culture Sydney Stanley, Donald J. Hamel, Ian D. Wolf, Stefan Riedel, Sanjucta Dutta, Elisa Contreras, et al. (+6)
155 [GO] Journal of Virology 2022―Apr―14 Single-Cell Landscape of Lungs Reveals Key Role of Neutrophil-Mediated Immunopathology during Lethal SARS-CoV-2 Infection Xiao-Shuang Zheng, Qi Wang, Juan Min, Xu-Rui Shen, Qian Li, Qiu-Chen Zhao, et al. (+14)
156 [GO] mBio 2022―Apr―14 Erratum for Vanderheiden et al., “CCR2 Signaling Restricts SARS-CoV-2 Infection” Abigail Vanderheiden, Jeronay Thomas, Allison L. Soung, Meredith E. Davis-Gardner, Katharine Floyd, Fengzhi Jin, et al. (+12)
157 [GO] Microbiology Resource Announcements 2022―Apr―14 Coding-Complete Sequence of a SARS-CoV-2 Strain from an Omicron (B.1.1.529+BA.1) Variant Detected in Morocco Taha Chouati, Mouhssine Hemlali, Marouane Melloul, Sanaa Alaoui-Amine, Safae Rhoulam, Hamza Ghamaz, et al. (+11)
158 [GO] mBio 2022―Apr―14 The Delta SARS-CoV-2 Variant of Concern Induces Distinct Pathogenic Patterns of Respiratory Disease in K18-hACE2 Transgenic Mice Compared to the Ancestral Strain from Wuhan Xiang Liu, Helen Mostafavi, Wern Hann Ng, Joseph R. Freitas, Nicholas J. C. King, Ali Zaid, et al. (+3)
159 [GO] Microbiology Resource Announcements 2022―Apr―13 Report of SARS-CoV-2 BA.1 Lineage in Morocco Safae El Mazouri, Houda Bendani, Nasma Boumajdi, Mhammed Chaoui Roqai, Tarik Aanniz, Myriam Seffar, et al. (+8)
160 [GO] Microbiology Spectrum 2022―Apr―12 Semi-Mechanistic Pharmacokinetic-Pharmacodynamic Model of Camostat Mesylate-Predicted Efficacy against SARS-CoV-2 in COVID-19 Yuri Kosinsky, Kirill Peskov, Donald R. Stanski, Diana Wetmore, Joseph Vinetz, Abimbola O. Kolawole
161 [GO] Journal of Microbiology and Biology Education 2022―Apr―12 Online and In-Person Learning Preferences during the COVID-19 Pandemic among Students Attending the City University of New York Diane Price Banks, Sasha M. Vergez
162 [GO] Microbiology Spectrum 2022―Apr―12 Differences in Transmission between SARS-CoV-2 Alpha (B.1.1.7) and Delta (B.1.617.2) Variants Camino Trobajo-Sanmartín, Iván Martínez-Baz, Ana Miqueleiz, Miguel Fernández-Huerta, Cristina Burgui, Itziar Casado, et al. (+5)
163 [GO] Microbiology Spectrum 2022―Apr―12 Clinical Evaluation of BD Veritor SARS-CoV-2 and Flu A+B Assay for Point-Of-Care System Katherine Christensen, Huimiao Ren, Shirley Chen, Charles K. Cooper, Stephen Young, Eleanor A. Powell
164 [GO] Microbiology Spectrum 2022―Apr―12 Changing Patterns of SARS-CoV-2 Seroprevalence among Canadian Blood Donors during the Vaccine Era Cassandra N. Reedman, Steven J. Drews, Qi-Long Yi, Chantale Pambrun, Sheila F. O’Brien, Susan Realegeno
165 [GO] Microbiology Spectrum 2022―Apr―12 Wastewater-Based SARS-CoV-2 Surveillance in Northern New England Diana M. Toledo, Ashlee A. Robbins, Torrey L. Gallagher, Kenneth Chase Hershberger, Rachael E. Barney, Sabrina M. Salmela, et al. (+9)
166 [GO] Journal of Virology 2022―Apr―12 Single Immunization with Recombinant ACAM2000 Vaccinia Viruses Expressing the Spike and the Nucleocapsid Proteins Protects Hamsters against SARS-CoV-2-Caused Clinical Disease Yvon Deschambault, Jessie Lynch, Bryce Warner, Kevin Tierney, Denise Huynh, Robert Vendramelli, et al. (+15)
167 [GO] Journal of Microbiology and Biology Education 2022―Apr―11 New Online Accommodations Are Not Enough: The Mismatch between Student Needs and Supports Given for Students with Disabilities during the COVID-19 Pandemic Logan E. Gin, Danielle C. Pais, Kristen D. Parrish, Sara E. Brownell, Katelyn M. Cooper
168 [GO] Journal of Virology 2022―Apr―07 The COVID-19 Humoral Immunological Status Induced by CoronaVac and AstraZeneca Vaccines Significantly Benefits from a Booster Shot with the Pfizer Vaccine Jessica Pires Farias, Patrícia de Souza da Silva, Mayanna Moreira Costa Fogaça, Itana Vivian Rocha Santana, Wilson Barros Luiz, Alexander Birbrair, et al. (+2)
169 [GO] Journal of Microbiology and Biology Education 2022―Apr―07 Microbiology Laboratory Simulations: From a Last-Minute Resource during the Covid-19 Pandemic to a Valuable Learning Tool to Retain-A Semester Microbiology Laboratory Curriculum That Uses Labster as Prelaboratory Activity Manuela Tripepi
170 [GO] Journal of Virology 2022―Apr―07 Structural Basis of the Main Proteases of Coronavirus Bound to Drug Candidate PF-07321332 Jian Li, Cheng Lin, Xuelan Zhou, Fanglin Zhong, Pei Zeng, Yang Yang, et al. (+9)
171 [GO] Journal of Virology 2022―Apr―07 SARS-CoV-2 nsp5 Exhibits Stronger Catalytic Activity and Interferon Antagonism than Its SARS-CoV Ortholog Jiyao Chen, Zhuang Li, Jiahui Guo, Shangen Xu, Junwei Zhou, Qian Chen, et al. (+6)
172 [GO] Microbiology Spectrum 2022―Apr―07 The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico Selene Zárate, Blanca Taboada, José Esteban Muñoz-Medina, Pavel Iša, Alejandro Sanchez-Flores, Celia Boukadida, et al. (+31)
173 [GO] Journal of Clinical Microbiology 2022―Apr―07 Multicenter Evaluation of the BioFire Respiratory Panel 2.1 (RP2.1) for Detection of SARS-CoV-2 in Nasopharyngeal Swab Samples Gregory J. Berry, Wei Zhen, Elizabeth Smith, Ryhana Manji, Suzane Silbert, Amorce Lima, et al. (+6)
174 [GO] Microbiology Spectrum 2022―Apr―07 Simultaneous Measurement of IgM and IgG Antibodies to SARS-CoV-2 Spike, RBD, and Nucleocapsid Multiplexed in a Single Assay on the xMAP INTELLIFLEX DR-SE Flow Analyzer Andrew Cameron, Jessica L. Bohrhunter, Claire A. Porterfield, Rupinder Mangat, Michael H. Karasick, Zachary Pearson, et al. (+3)
175 [GO] Microbiology Spectrum 2022―Apr―06 Longer Intervals before Vaccination Increase Spike Antibody Titers in Individuals Previously Infected with SARS-CoV-2 Xiuqiong Bi, Tomoko Takayama, Masaharu Tokoro, Tetsushi Mizuno, Akinori Hara, Hiroyuki Nakamura, et al. (+5)
176 [GO] Journal of Microbiology and Biology Education 2022―Apr―05 Why Did Students Report Lower Test Anxiety during the COVID-19 Pandemic? Sharday N. Ewell, Chloe C. Josefson, Cissy J. Ballen
177 [GO] Journal of Microbiology and Biology Education 2022―Apr―05 Education Racial and Gender Disparities in COVID-19 Worry, Stress, and Food Insecurities across Undergraduate Biology Students at a Southeastern University Kelly M. Correia, Shannon R. Bierma, Sophia D. Houston, Madison T. Nelson, Khushwant S. Pannu, Chase M. Tirman, et al. (+7)
178 [GO] Applied and Environmental Microbiology 2022―Apr―05 Detection of SARS-CoV-2 Variants Mu, Beta, Gamma, Lambda, Delta, Alpha, and Omicron in Wastewater Settled Solids Using Mutation-Specific Assays Is Associated with Regional Detection of Variants in Clinical Samples Marlene Wolfe, Bridgette Hughes, Dorothea Duong, Vikram Chan-Herur, Krista R. Wigginton, Bradley J. White, et al. (+2)
179 [GO] Journal of Microbiology and Biology Education 2022―Apr―04 We Can’t Fail Again: Arguments for Professional Development in the Wake of COVID-19 Lisa L. Walsh, Robert J. Bills, Stanley M. Lo, Emily M. Walter, Benjamin E. Weintraub, Michelle D. Withers
180 [GO] Microbiology Spectrum 2022―Apr―04 Analysis of Clinical Course and Vaccination Influence on Serological Response in COVID-19 Convalescents Justyna Adamczuk, Piotr Czupryna, Justyna Dunaj-Małyszko, Ewelina Kruszewska, Sławomir Pancewicz, Karol Kamiński, et al. (+4)
181 [GO] Journal of Clinical Microbiology 2022―Apr―04 SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time Fiona Ashford, Angus Best, Steven J. Dunn, Zahra Ahmed, Henna Siddiqui, Jordan Melville, et al. (+14)
182 [GO] Microbiology Spectrum 2022―Mar―31 Rapid Quantitative Point-Of-Care Diagnostic Test for Post COVID-19 Vaccination Antibody Monitoring Maria E. Moeller, Frederik N. Engsig, Melanie Bade, Jeppe Fock, Pearlyn Pah, Anna Louise Soerensen, et al. (+4)
183 [GO] mBio 2022―Mar―31 Are Unique Regional Factors the Missing Link in India’s COVID-19-Associated Mucormycosis Crisis? Jessy Skaria, Teny M. John, Shibu Varkey, Dimitrios P. Kontoyiannis, Tom Chiller
184 [GO] Microbiology Spectrum 2022―Mar―30 Effects of COVID-19 on Blood Culture Contamination at a Tertiary Care Academic Medical Center Brianna Sacchetti, Justin Travis, Lisa L. Steed, Ginny Webb, Eleanor A. Powell
185 [GO] mBio 2022―Mar―30 The Impact of Evolving SARS-CoV-2 Mutations and Variants on COVID-19 Vaccines Gary McLean, Jeremy Kamil, Benhur Lee, Penny Moore, Thomas F. Schulz, Alexander Muik, et al. (+4)
186 [GO] Microbiology Spectrum 2022―Mar―30 Update on SARS-CoV-2 Omicron Variant of Concern and Its Peculiar Mutational Profile Mohammad Alkhatib, Romina Salpini, Luca Carioti, Francesca Alessandra Ambrosio, Stefano D’Anna, Leonardo Duca, et al. (+9)
187 [GO] Journal of Virology 2022―Mar―30 Possible Cross-Reactivity of Feline and White-Tailed Deer Antibodies against the SARS-CoV-2 Receptor Binding Domain Trevor J. Hancock, Peyton Hickman, Niloo Kazerooni, Melissa Kennedy, Stephen A. Kania, Michelle Dennis, et al. (+7)
188 [GO] Microbiology Spectrum 2022―Mar―29 SARS-CoV-2 Point Mutation and Deletion Spectra and Their Association with Different Disease Outcomes Brenda Martínez-González, María Eugenia Soria, Lucía Vázquez-Sirvent, Cristina Ferrer-Orta, Rebeca Lobo-Vega, Pablo Mínguez, et al. (+21)
189 [GO] Microbiology Spectrum 2022―Mar―29 The Usefulness of Antigen Testing in Predicting Contagiousness in COVID-19 Tulio J. Lopera, Juan Carlos Alzate-Ángel, Francisco J. Díaz, María T. Rugeles, Wbeimar Aguilar-Jiménez, Eleanor A. Powell
190 [GO] Microbiology and Molecular Biology Reviews 2022―Mar―28 Molecular Virology of SARS-CoV-2 and Related Coronaviruses Yu-An Kung, Kuo-Ming Lee, Huan-Jung Chiang, Sheng-Yu Huang, Chung-Jung Wu, Shin-Ru Shih
191 [GO] Journal of Virology 2022―Mar―28 Inactivated SARS-CoV-2 Vaccine Shows Cross-Protection against Bat SARS-Related Coronaviruses in Human ACE2 Transgenic Mice Mei-Qin Liu, Ren-Di Jiang, Jing Guo, Ying Chen, Dong-Sheng Yang, Xi Wang, et al. (+8)
192 [GO] Journal of Virology 2022―Mar―28 Structural Basis for Human Receptor Recognition by SARS-CoV Omicron Variant BA.1 Qibin Geng, Ke Shi, Gang Ye, Wei Zhang, Hideki Aihara, Fang Li, Tom Gallagher
193 [GO] Journal of Virology 2022―Mar―28 Distinctive Roles of Furin and TMPRSS2 in SARS-CoV-2 Infectivity Rachid Essalmani, Jaspreet Jain, Delia Susan-Resiga, Ursula Andréo, Alexandra Evagelidis, Rabeb Mouna Derbali, et al. (+13)
194 [GO] mBio 2022―Mar―28 Viral Mimicry of Interleukin-17A by SARS-CoV-2 ORF8 Xin Wu, Tian Xia, Woo-Jin Shin, Kwang-Min Yu, Wooram Jung, Alexandra Herrmann, et al. (+11)
195 [GO] Microbiology Resource Announcements 2022―Mar―28 Genome Sequences of 408 SARS-CoV-2 Strains Obtained from Nasopharyngeal Swabs in La Araucanía Region, Southern Chile Michel Abanto Marin, Benjamín Leyton-Carcaman, Claudio Vázquez, Benjamín Durán-Vinet, Katterin Bobadilla, Claudio Rodriguez-Ruiz, et al. (+9)
196 [GO] Journal of Microbiology and Biology Education 2022―Mar―28 Increasing Student Engagement through Course Attributes, Community, and Classroom Technology: Lessons from the Pandemic Cristine Donham, Cathy Pohan, Erik Menke, Petra Kranzfelder
197 [GO] Journal of Clinical Microbiology 2022―Mar―28 The SARS-CoV-2 Omicron Variant Does Not Have Higher Nasal Viral Loads Compared to the Delta Variant in Symptomatic and Asymptomatic Individuals Andrew M. Laitman, Joshua A. Lieberman, Noah G. Hoffman, Pavitra Roychoudhury, Patrick C. Mathias, Alexander L. Greninger, Yi-Wei Tang
198 [GO] Journal of Clinical Microbiology 2022―Mar―28 Impact of SARS-CoV-2 Variants on the Analytical Sensitivity of rRT-PCR Assays Yuqing Chen, Yanxi Han, Jing Yang, Yu Ma, Jinming Li, Rui Zhang, Yi-Wei Tang
199 [GO] Journal of Clinical Microbiology 2022―Mar―25 Prognostic Impact of Bronchoalveolar Lavage Fluid Galactomannan and Aspergillus Culture Results on Survival in COVID-19 Intensive Care Unit Patients: a Post Hoc Analysis from the European Confederation of Medical Mycology (ECMM) COVID-19-Associated Pulmonary Aspergillosis Study Daniele Roberto Giacobbe, Juergen Prattes, Joost Wauters, Silvia Dettori, Alessio Signori, Jon Salmanton-García, et al. (+16)
200 [GO] Journal of Clinical Microbiology 2022―Mar―25 Performance of COVIDSeq and Swift Normalase Amplicon SARS-CoV-2 Panels for SARS-CoV-2 Genome Sequencing: Practical Guide and Combining FASTQ Strategy Hosoon Choi, Munok Hwang, Dhammika H. Navarathna, Jing Xu, Janell Lukey, Chetan Jinadatha, Angela M. Caliendo
201 [GO] Journal of Clinical Microbiology 2022―Mar―25 Highly Sensitive Lineage Discrimination of SARS-CoV-2 Variants through Allele-Specific Probe PCR Jeremy Ratcliff, Farah Al-Beidh, Sagida Bibi, David Bonsall, Sue Ann Costa Clemens, Lise Estcourt, et al. (+23)
202 [GO] Microbiology Resource Announcements 2022―Mar―24 Genome Sequences of 25 SARS-CoV-2 Sublineage B.1.1.529 Omicron Strains in Bangladesh Omar Hamza Bin Manjur, Mokibul Hassan Afrad, Manjur Hossain Khan, Mohabbat Hossain, Zannat Kawser, Ahmed Nawsher Alam, et al. (+16)
203 [GO] Journal of Microbiology and Biology Education 2022―Mar―23 Student Anxiety and Engagement with Online Instruction across Two Semesters of COVID-19 Disruptions Eric Pennino, Catherine Ishikawa, Sayonita Ghosh Hajra, Navneet Singh, Kelly McDonald
204 [GO] Microbiology Spectrum 2022―Mar―23 High Seroprevalence of SARS-CoV-2 in White-Tailed Deer (Odocoileus virginianus) at One of Three Captive Cervid Facilities in Texas Christopher M. Roundy, Chase M. Nunez, Logan F. Thomas, Lisa D. Auckland, Wendy Tang, Jack J. Richison, et al. (+8)
205 [GO] Journal of Virology 2022―Mar―23 Heparanase Blockade as a Novel Dual-Targeting Therapy for COVID-19 Jingyu Xiang, Mijia Lu, Min Shi, Xiaogang Cheng, Kristin A. Kwakwa, Jennifer L. Davis, et al. (+14)
206 [GO] Microbiology Spectrum 2022―Mar―23 Multiple Routes of Antibody-Dependent Enhancement of SARS-CoV-2 Infection Kosuke Okuya, Takanari Hattori, Takeshi Saito, Yoshihiro Takadate, Michihito Sasaki, Wakako Furuyama, et al. (+6)
207 [GO] Journal of Clinical Microbiology 2022―Mar―23 Implementation of a Streamlined SARS-CoV-2 Whole-Genome Sequencing Assay for Expeditious Surveillance during the Emergence of the Omicron Variant John A. Fissel, Javier Mestas, Pei Ying Chen, Jessica Flores-Vazquez, Thao T. Truong, Moiz Bootwalla, et al. (+4)
208 [GO] Microbiology Spectrum 2022―Mar―22 Longitudinal SARS-CoV-2 Testing among the Unvaccinated Is Punctuated by Intermittent Positivity and Variable Rates of Increasing Cycle Threshold Values Shawn E. Hawken, Subhashini A. Sellers, Jason R. Smedberg, Jeremy D. Ward, Avian M. Elliott, Herbert C. Whinna, et al. (+3)
209 [GO] Journal of Virology 2022―Mar―21 Coronavirus Porcine Deltacoronavirus Upregulates MHC Class I Expression through RIG-I/IRF1-Mediated NLRC5 Induction Xiang Liu, Lingdan Yin, Mei Xue, Jianfei Chen, Liang Li, Fang Fu, et al. (+3)
210 [GO] Microbiology Spectrum 2022―Mar―21 Comparison of Saliva and Midturbinate Swabs for Detection of SARS-CoV-2 Jianyu Lai, Jennifer German, Filbert Hong, S.-H. Sheldon Tai, Kathleen M. McPhaul, Donald K. Milton, Heba H. Mostafa
211 [GO] mSystems 2022―Mar―21 Mapping Data to Deep Understanding: Making the Most of the Deluge of SARS-CoV-2 Genome Sequences Bahrad A. Sokhansanj, Gail L. Rosen, Marta M. Gaglia
212 [GO] Microbiology Spectrum 2022―Mar―21 The Effect of Vaccine Type and SARS-CoV-2 Lineage on Commercial SARS-CoV-2 Serologic and Pseudotype Neutralization Assays in mRNA Vaccine Recipients Nicole V. Tolan, Amy C. Sherman, Guohai Zhou, Katherine G. Nabel, Michaël Desjardins, Stacy Melanson, et al. (+13)
213 [GO] Microbiology Spectrum 2022―Mar―21 SARS-CoV-2 Lineage Tracking, and Evolving Trends Seen during Three Consecutive Peaks of Infection in Delhi, India: a Clinico-Genomic Study Pramod Gautam, Diptanu Paul, Varun Suroliya, Rahul Garg, Reshu Agarwal, Santanu Das, et al. (+8)
214 [GO] Microbiology Spectrum 2022―Mar―21 Profiling of SARS-CoV-2 Subgenomic RNAs in Clinical Specimens Zigui Chen, Rita Way Yin Ng, Grace Lui, Lowell Ling, Chit Chow, Apple Chung Man Yeung, et al. (+7)
215 [GO] mBio 2022―Mar―17 Broad Neutralization of SARS-CoV-2 Variants, Including Omicron, following Breakthrough Infection with Delta in COVID-19-Vaccinated Individuals Thomas Lechmere, Luke B. Snell, Carl Graham, Jeffrey Seow, Zayed A. Shalim, Themoula Charalampous, et al. (+7)
216 [GO] mSphere 2022―Mar―17 A 265-Nanometer High-Power Deep-UV Light-Emitting Diode Rapidly Inactivates SARS-CoV-2 Aerosols Hiroshi Ueki, Mutsumi Ito, Yuri Furusawa, Seiya Yamayoshi, Shin-ichiro Inoue, Yoshihiro Kawaoka, Nicole M. Bouvier
217 [GO] Journal of Clinical Microbiology 2022―Mar―16 Clinical Laboratory Budgets during the COVID-19 Pandemic: a Micro-Comic Strip Alexander J. McAdam, Carey-Ann D. Burnham
218 [GO] Microbiology Spectrum 2022―Mar―16 Diagnostic Performance of Six Rapid Antigen Tests for SARS-CoV-2 Jessica Navero-Castillejos, Climent Casals-Pascual, Sofía Narváez, Genoveva Cuesta, Juan Carlos Hurtado, Mariana Fernandez, et al. (+9)
219 [GO] Journal of Virology 2022―Mar―16 When Poly(A) Binding Proteins Meet Viral Infections, Including SARS-CoV-2 Jie Gao, Yan-Dong Tang, Wei Hu, Chunfu Zheng, Rozanne M. Sandri-Goldin
220 [GO] Journal of Virology 2022―Mar―16 SARS-CoV-2 Evolution: On the Sudden Appearance of the Omicron Variant Ben Berkhout, Elena Herrera-Carrillo, Tom Gallagher
221 [GO] Microbiology Spectrum 2022―Mar―16 Neutralizing Monoclonal Antibodies Inhibit SARS-CoV-2 Infection through Blocking Membrane Fusion Chia-Jung Li, Tai-Ling Chao, Ting-Yu Chang, Chia-Chun Hsiao, De-Chao Lu, Yi-Wei Chiang, et al. (+8)
222 [GO] Journal of Virology 2022―Mar―16 Host Cells Actively Resist Porcine Reproductive and Respiratory Syndrome Virus Infection via the IRF8-MicroRNA-10a-SRP14 Regulatory Pathway Zifang Zheng, Xiali Fu, Xue Ling, Huanhuan Sun, Yang Li, Zhiqian Ma, et al. (+4)
223 [GO] mBio 2022―Mar―15 Epistasis at the SARS-CoV-2 Receptor-Binding Domain Interface and the Propitiously Boring Implications for Vaccine Escape Nash D. Rochman, Guilhem Faure, Yuri I. Wolf, Peter L. Freddolino, Feng Zhang, Eugene V. Koonin, Michael S. Diamond
224 [GO] Applied and Environmental Microbiology 2022―Mar―14 Data on Transfer of Human Coronavirus SARS-CoV-2 from Foods and Packaging Materials to Gloves Indicate That Fomite Transmission Is of Minor Importance S. Butot, S. Zuber, M. Moser, L. Baert, Christopher A. Elkins
225 [GO] mSphere 2022―Mar―14 Correlation of Immunogenicity and Reactogenicity of BNT162b2 and CoronaVac SARS-CoV-2 Vaccines Ruiqi Zhang, Ka-Yi Leung, Danlei Liu, Yujing Fan, Lu Lu, Pui-Chun Chan, et al. (+6)
226 [GO] Applied and Environmental Microbiology 2022―Mar―14 Design of SARS-CoV-2 Variant-Specific PCR Assays Considering Regional and Temporal Characteristics Chamteut Oh, Palash Sashittal, Aijia Zhou, Leyi Wang, Mohammed El-Kebir, Thanh H. Nguyen, Christopher A. Elkins
227 [GO] Microbiology Spectrum 2022―Mar―14 Specific Detection of SARS-CoV-2 Variants B.1.1.7 (Alpha) and B.1.617.2 (Delta) Using a One-Step Quantitative PCR Assay Oran Erster, Ella Mendelson, Areej Kabat, Virginia Levy, Batya Mannasse, Hadar Assraf, et al. (+12)
228 [GO] Microbiology Spectrum 2022―Mar―10 Performance of Immunoglobulin G Serology on Finger Prick Capillary Dried Blood Spot Samples to Detect a SARS-CoV-2 Antibody Response Aidan M. Nikiforuk, Brynn McMillan, Sofia R. Bartlett, Ana Citlali Márquez, Tamara Pidduck, Jesse Kustra, et al. (+11)
229 [GO] mBio 2022―Mar―10 Characterization of SARS-CoV-2 Variants B.1.617.1 (Kappa), B.1.617.2 (Delta), and B.1.618 by Cell Entry and Immune Evasion Wenlin Ren, Xiaohui Ju, Mingli Gong, Jun Lan, Yanying Yu, Quanxin Long, et al. (+11)
230 [GO] Clinical Microbiology Reviews 2022―Mar―09 COVID-19 Convalescent Plasma and Clinical Trials: Understanding Conflicting Outcomes Daniele Focosi, Massimo Franchini, Liise-anne Pirofski, Thierry Burnouf, Nigel Paneth, Michael J. Joyner, Arturo Casadevall
231 [GO] Microbiology Spectrum 2022―Mar―09 Vaccine-Induced Antibody Responses against SARS-CoV-2 Variants-Of-Concern Six Months after the BNT162b2 COVID-19 mRNA Vaccination Pinja Jalkanen, Pekka Kolehmainen, Anu Haveri, Moona Huttunen, Larissa Laine, Pamela Österlund, et al. (+13)
232 [GO] Journal of Virology 2022―Mar―09 Increased Sensitivity of SARS-CoV-2 to Type III Interferon in Human Intestinal Epithelial Cells Camila Metz-Zumaran, Carmon Kee, Patricio Doldan, Cuncai Guo, Megan L. Stanifer, Steeve Boulant, Kanta Subbarao
233 [GO] mBio 2022―Mar―08 Structural Dynamics and Molecular Evolution of the SARS-CoV-2 Spike Protein Kyle A. Wolf, Jason C. Kwan, Jeremy P. Kamil, Vinayaka R. Prasad
234 [GO] Clinical Microbiology Reviews 2022―Mar―08 Digital PCR Applications in the SARS-CoV-2/COVID-19 Era: a Roadmap for Future Outbreaks Raphael Nyaruaba, Caroline Mwaliko, David Dobnik, Pavel Neužil, Patrick Amoth, Matilu Mwau, et al. (+3)
235 [GO] mBio 2022―Mar―07 Nutritional Modulation of Gut Microbiota Alleviates Severe Gastrointestinal Symptoms in a Patient with Post-Acute COVID-19 Syndrome Ying Wang, Guojun Wu, Liping Zhao, Weizheng Wang, Vaughn S. Cooper
236 [GO] Infection and Immunity 2022―Mar―07 Bacillus -Based Direct-Fed Microbial Reduces the Pathogenic Synergy of a Coinfection with Salmonella enterica Serovar Choleraesuis and Porcine Reproductive and Respiratory Syndrome Virus Federico A. Zuckermann, Robert Husmann, WeiYu Chen, Patrick Roady, Janice Pfeiff, Kyle R. Leistikow, et al. (+5)
237 [GO] Microbiology Spectrum 2022―Mar―07 Correlation Analysis between Gut Microbiota Alterations and the Cytokine Response in Patients with Coronavirus Disease during Hospitalization Taketoshi Mizutani, Aya Ishizaka, Michiko Koga, Kazuhiko Ikeuchi, Makoto Saito, Eisuke Adachi, et al. (+10)
238 [GO] Journal of Clinical Microbiology 2022―Mar―07 Using Spike Gene Target Failure to Estimate Growth Rate of the Alpha and Omicron Variants of SARS-CoV-2 Benjamin F. Smith, Peter F. Graven, Doris Y. Yang, Siouxzanna M. Downs, Donna E. Hansel, Guang Fan, et al. (+2)
239 [GO] Microbiology Spectrum 2022―Mar―07 Conserved Pattern and Potential Role of Recurrent Deletions in SARS-CoV-2 Evolution Shenghui Weng, Hangyu Zhou, Chengyang Ji, Liang Li, Na Han, Rong Yang, et al. (+3)
240 [GO] Microbiology Spectrum 2022―Mar―07 Diagnostic Value of a SARS-CoV-2 Rapid Test Kit for Detection of Neutralizing Antibodies as a Point-of-Care Surveillance Test Michele Mun Hei Chan, Ka-Yi Leung, Ricky Rui Qi Zhang, Danlei Liu, Yujing Fan, Matthew Ka Wa Khong, et al. (+6)
241 [GO] Journal of Clinical Microbiology 2022―Mar―07 Immunity to SARS-CoV-2: What Do We Know and Should We Be Testing for It? Anisha Misra, Elitza S. Theel, Romney M. Humphries
242 [GO] mBio 2022―Mar―01 Minimal Crossover between Mutations Associated with Omicron Variant of SARS-CoV-2 and CD8 + T-Cell Epitopes Identified in COVID-19 Convalescent Individuals Andrew D. Redd, Alessandra Nardin, Hassen Kared, Evan M. Bloch, Brian Abel, Andrew Pekosz, et al. (+5)
243 [GO] mBio 2022―Mar―01 The FDA-Approved Drug Cobicistat Synergizes with Remdesivir To Inhibit SARS-CoV-2 Replication In Vitro and Decreases Viral Titers and Disease Progression in Syrian Hamsters Iart Luca Shytaj, Mohamed Fares, Lara Gallucci, Bojana Lucic, Mahmoud M. Tolba, Liv Zimmermann, et al. (+25)
244 [GO] mBio 2022―Mar―01 Contribution of Host miRNA-223-3p to SARS-CoV-Induced Lung Inflammatory Pathology Lucía Morales, Juan Carlos Oliveros, Luis Enjuanes, Isabel Sola, Xiang-Jin Meng
245 [GO] Journal of Virology 2022―Feb―28 Omicron: what makes the latest SARS-CoV-2 variant of concern so concerning? Christoph Jung, Dorota Kmiec, Lennart Koepke, Fabian Zech, Timo Jacob, Konstantin M. J. Sparrer, Frank Kirchhoff
246 [GO] mSphere 2022―Feb―28 Adenovirus 5 Vectors Expressing SARS-CoV-2 Proteins Scott Bachus, Nikolas Akkerman, Lauren Fulham, Drayson Graves, Caelan Stephanson, Harram Memon, et al. (+3)
247 [GO] Microbiology Spectrum 2022―Feb―23 Dynamic Changes of the Blood Chemistry in Syrian Hamsters Post-Acute COVID-19 Chi-Ju Hsu, Wen-Chin Lin, Yu-Ching Chou, Chuen-Mi Yang, Hsueh-Ling Wu, Yun-Hsiang Cheng, et al. (+5)
248 [GO] Microbiology Spectrum 2022―Feb―23 Evaluation of the Levels of Peripheral CD3 + , CD4 + , and CD8 + T Cells and IgG and IgM Antibodies in COVID-19 Patients at Different Stages of Infection Waleed Aljabr, Ahod Al-Amari, Basma Abbas, Alaa Karkashan, Saad Alamri, Mohammed Alnamnakani, et al. (+2)
249 [GO] Microbiology Spectrum 2022―Feb―23 Implementation and Extended Evaluation of the Euroimmun Anti-SARS-CoV-2 IgG Assay and Its Contribution to the United Kingdom’s COVID-19 Public Health Response Ashley David Otter, Abbie Bown, Silvia D’Arcangelo, Daniel Bailey, Amanda Semper, Jacqueline Hewson, et al. (+21)
250 [GO] Microbiology Spectrum 2022―Feb―23 Convalescent Plasma for Preventing Critical Illness in COVID-19: a Phase 2 Trial and Immune Profile Jeffrey M. Sturek, Tania A. Thomas, James D. Gorham, Chelsea A. Sheppard, Allison H. Raymond, Kristen Petros De Guex, et al. (+14)
251 [GO] Microbiology Spectrum 2022―Feb―23 Limited Recognition of Highly Conserved Regions of SARS-CoV-2 Srividhya Swaminathan, Katie E. Lineburg, George R. Ambalathingal, Pauline Crooks, Emma J. Grant, Sonali V. Mohan, et al. (+12)
252 [GO] Microbiology Spectrum 2022―Feb―23 The Comparability of Anti-Spike SARS-CoV-2 Antibody Tests is Time-Dependent: a Prospective Observational Study Thomas Perkmann, Patrick Mucher, Nicole Perkmann-Nagele, Astrid Radakovics, Manuela Repl, Thomas Koller, et al. (+8)
253 [GO] Microbiology Spectrum 2022―Feb―23 Spread of Gamma (P.1) Sub-Lineages Carrying Spike Mutations Close to the Furin Cleavage Site and Deletions in the N-Terminal Domain Drives Ongoing Transmission of SARS-CoV-2 in Amazonas, Brazil Felipe Gomes Naveca, Valdinete Nascimento, Victor Souza, André de Lima Corado, Fernanda Nascimento, George Silva, et al. (+37)
254 [GO] Microbiology Spectrum 2022―Feb―23 Evaluation of the Performance of a Multiplexed Serological Assay in the Detection of SARS-CoV-2 Infections in a Predominantly Vaccinated Population Michael Asamoah-Boaheng, David M. Goldfarb, Vilte Barakauskas, Tracy L. Kirkham, Paul A. Demers, Mohammad Ehsanul Karim, et al. (+7)
255 [GO] Microbiology Spectrum 2022―Feb―23 Estimating SARS-CoV-2 Seroprevalence in Canadian Blood Donors, April 2020 to March 2021: Improving Accuracy with Multiple Assays Ashleigh R. Tuite, David Fisman, Kento T. Abe, Bhavisha Rathod, Adrian Pasculescu, Karen Colwill, et al. (+5)
256 [GO] Microbiology Spectrum 2022―Feb―23 Emergency SARS-CoV-2 Variants of Concern: Novel Multiplex Real-Time RT-PCR Assay for Rapid Detection and Surveillance Hsing-Yi Chung, Ming-Jr Jian, Chih-Kai Chang, Jung-Chung Lin, Kuo-Ming Yeh, Chien-Wen Chen, et al. (+8)
257 [GO] Antimicrobial Agents and Chemotherapy 2022―Feb―22 Efficacy and Safety of SARS-CoV-2 Neutralizing Antibody JS016 in Hospitalized Chinese Patients with COVID-19: A Phase 2/3, Multicenter, Randomized, Open-label, Controlled Trial Run Dong, Li Jiang, Ting Yang, Changsong Wang, Yi Zhang, Xu Chen, et al. (+7)
258 [GO] Antimicrobial Agents and Chemotherapy 2022―Feb―22 Efficacy and Safety of SARS-CoV-2 Neutralizing Antibody JS016 in Hospitalized Chinese Patients with COVID-19: a Phase 2/3, Multicenter, Randomized, Open-Label, Controlled Trial Run Dong, Li Jiang, Ting Yang, Changsong Wang, Yi Zhang, Xu Chen, et al. (+7)
259 [GO] Microbiology Spectrum 2022―Feb―16 Bean Extract-Based Gargle for Efficient Diagnosis of Active COVID-19 Infection Using Rapid Antigen Tests Joseph Kwon, Euna Ko, Se-Young Cho, Young-Ho Lee, Sangmi Jun, Kyuhong Lee, et al. (+22)
260 [GO] Microbiology Spectrum 2022―Feb―16 Lipid and Nucleocapsid N-Protein Accumulation in COVID-19 Patient Lung and Infected Cells Anita E. Grootemaat, Sanne van der Niet, Edwin R. Scholl, Eva Roos, Bernadette Schurink, Marianna Bugiani, et al. (+6)
261 [GO] Microbiology Spectrum 2022―Feb―16 Accuracy of Real-Time Polymerase Chain Reaction in COVID-19 Patients Merlin Jayalal Lawrence Panchali, Hyeon Jeong Oh, You Mi Lee, Choon-Mee Kim, Misbah Tariq, Jun-Won Seo, et al. (+4)
262 [GO] Microbiology Spectrum 2022―Feb―16 Real-Time RT-PCR Allelic Discrimination Assay for Detection of N501Y Mutation in the Spike Protein of SARS-CoV-2 Associated with B.1.1.7 Variant of Concern Mariana Abdulnoor, AliReza Eshaghi, Stephen J. Perusini, George Broukhanski, Antoine Corbeil, Kirby Cronin, et al. (+16)
263 [GO] Microbiology Spectrum 2022―Feb―16 High-Titer Neutralizing Antibodies against the SARS-CoV-2 Delta Variant Induced by Alhydroxyquim-II-Adjuvanted Trimeric Spike Antigens Claudio Counoupas, Paco Pino, Alberto O. Stella, Caroline Ashley, Hannah Lukeman, Nayan D. Bhattacharyya, et al. (+16)
264 [GO] Microbiology Spectrum 2022―Feb―16 Elevated Cytokine Levels in Plasma of Patients with SARS-CoV-2 Do Not Contribute to Pulmonary Microvascular Endothelial Permeability Anita Kovacs-Kasa, Abdelrahman A. Zaied, Silvia Leanhart, Murat Koseoglu, Supriya Sridhar, Rudolf Lucas, et al. (+4)
265 [GO] Microbiology Spectrum 2022―Feb―16 Combined Prospective Seroconversion and PCR Data of Selected Cohorts Indicate a High Rate of Subclinical SARS-CoV-2 Infections-an Open Observational Study in Lower Saxony, Germany Rebecca Jonczyk, Nils Stanislawski, Lisa K. Seiler, Holger Blume, Stefanie Heiden, Henning Lucas, et al. (+11)
266 [GO] Microbiology Spectrum 2022―Feb―16 Genomic Surveillance of SARS-CoV-2 Lineages Indicates Early Circulation of P.1 (Gamma) Variant of Concern in Southern Brazil Priscila Lamb Wink, Rafaela Ramalho, Francielle Liz Monteiro, Fabiana Caroline Zempulski Volpato, Julia Biz Willig, Otávio von Ameln Lovison, et al. (+4)
267 [GO] Microbiology Spectrum 2022―Feb―16 Comparison between Nasal and Nasopharyngeal Swabs for SARS-CoV-2 Rapid Antigen Detection in an Asymptomatic Population, and Direct Confirmation by RT-PCR from the Residual Buffer Glenn Patriquin, Jason J. LeBlanc, Catherine Williams, Todd F. Hatchette, John Ross, Lisa Barrett, et al. (+2)
268 [GO] Microbiology Spectrum 2022―Feb―16 SARS-CoV-2 Virus-Like Particle Neutralizing Capacity in Blood Donors Depends on Serological Profile and Donor-Declared SARS-CoV-2 Vaccination History Steven J. Drews, Queenie Hu, Reuben Samson, Kento T. Abe, Bhavisha Rathod, Karen Colwill, et al. (+4)
269 [GO] mBio 2022―Feb―15 The Human Nose Organoid Respiratory Virus Model: an Ex Vivo Human Challenge Model To Study Respiratory Syncytial Virus (RSV) and Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Pathogenesis and Evaluate Therapeutics Anubama Rajan, Ashley Morgan Weaver, Gina Marie Aloisio, Joseph Jelinski, Hannah L. Johnson, Susan F. Venable, et al. (+16)
270 [GO] mBio 2022―Feb―15 Genome-Wide Characterization of SARS-CoV-2 Cytopathogenic Proteins in the Search of Antiviral Targets Jiantao Zhang, Qi Li, Ruth S. Cruz Cosme, Volodymyr Gerzanich, Qiyi Tang, J. Marc Simard, et al. (+2)
271 [GO] mBio 2022―Feb―15 Inhibition of Protein N- Glycosylation Blocks SARS-CoV-2 Infection Aitor Casas-Sanchez, Alessandra Romero-Ramirez, Eleanor Hargreaves, Cameron C. Ellis, Brian I. Grajeda, Igor L. Estevao, et al. (+6)
272 [GO] mBio 2022―Feb―15 SARS-CoV-2 Variants Increase Kinetic Stability of Open Spike Conformations as an Evolutionary Strategy Ziwei Yang, Yang Han, Shilei Ding, Wei Shi, Tongqing Zhou, Andrés Finzi, et al. (+4)
273 [GO] Microbiology Spectrum 2022―Feb―09 Mycoplasma pneumoniae among Chinese Outpatient Children with Mild Respiratory Tract Infections during the Coronavirus Disease 2019 Pandemic Jiande Chen, Jing Zhang, Zhiwei Lu, Yu Chen, Songsong Huang, Hengtao Li, et al. (+35)
274 [GO] Microbiology Spectrum 2022―Feb―09 TNF-α Levels in Respiratory Samples Are Associated with SARS-CoV-2 Infection Matias J. Pereson, Maria Noel Badano, Natalia Aloisi, Roberto Chuit, M. M. E. de Bracco, Patricia Bare, Daniel R. Perez
275 [GO] Microbiology Spectrum 2022―Feb―09 A Feasible Alternative Strategy Targeting Furin Disrupts SARS-CoV-2 Infection Cycle Tanmoy Mondal, Gururaj Shivange, Alaa Habieb, Jogender Tushir-Singh, Samuel K. Campos
276 [GO] Microbiology Spectrum 2022―Feb―09 Heat Shock Protein Member 8 (HSPA8) Is Involved in Porcine Reproductive and Respiratory Syndrome Virus Attachment and Internalization Lei Wang, Rui Li, Rui Geng, Longxiang Zhang, Xin-xin Chen, Songlin Qiao, et al. (+2)
277 [GO] mBio 2022―Feb―08 Subcellular Detection of SARS-CoV-2 RNA in Human Tissue Reveals Distinct Localization in Alveolar Type 2 Pneumocytes and Alveolar Macrophages Kofi K. Acheampong, Dylan L. Schaff, Benjamin L. Emert, Jonathan Lake, Sam Reffsin, Emily K. Shea, et al. (+10)
278 [GO] mBio 2022―Feb―08 SARS-CoV-2 Variants Associated with Vaccine Breakthrough in the Delaware Valley through Summer 2021 Andrew D. Marques, Scott Sherrill-Mix, John K. Everett, Shantan Reddy, Pascha Hokama, Aoife M. Roche, et al. (+33)
279 [GO] Microbiology Resource Announcements 2022―Feb―03 Coding-Complete Genome Sequences of a Delta Subvariant (AY.33) of SARS-CoV-2 Obtained from Moroccan COVID-19 Patients Mouhssine Hemlali, Taha Chouati, Hamza Ghammaz, Marouane Melloul, Sanaâ Alaoui Amine, Safaa Rhoulam, et al. (+7)
280 [GO] Microbiology Resource Announcements 2022―Feb―03 SARS-CoV-2 Genome Sequence Obtained from Ethiopia Molalegne Bitew, Getnet Hailu, Yakob Gebregziabher Tsegay, Keyru Tuki, Kominist Asmamaw, Kassahun Tesfaye, et al. (+6)
281 [GO] Microbiology Resource Announcements 2022―Feb―03 Identification of the First SARS-CoV-2 Lineage B.1.1.529 Virus Detected in Europe Bert Vanmechelen, Anne-Sophie Logist, Tony Wawina-Bokalanga, Jens Verlinden, Joan Martí-Carreras, Caspar Geenen, et al. (+6)
282 [GO] mSphere 2022―Feb―02 Quantifying Neutralizing Antibodies in Patients with COVID-19 by a Two-Variable Generalized Additive Model Kuan-Ting Liu, Yu-Nong Gong, Chung-Guei Huang, Peng-Nien Huang, Kar-Yee Yu, Hou-Chen Lee, et al. (+20)
283 [GO] Microbiology Spectrum 2022―Feb―02 Evaluation of the Alinity m Resp-4-Plex Assay for the Detection of Severe Acute Respiratory Syndrome Coronavirus 2, Influenza A Virus, Influenza B Virus, and Respiratory Syncytial Virus Wei Zhen, Ryhana Manji, Elizabeth Smith, Jeffrey Wuitschick, Danijela Lucic, Gregory J. Berry, Rebekah M. Martin
284 [GO] Journal of Virology 2022―Feb―02 Coinfection of SARS-CoV-2 and Influenza A virus increased disease severity, impaired neutralizing antibody, and CD4+ T cell responses Eun-Ha Kim, Thi-Quyen Nguyen, Mark Anthony B. Casel, Rare Rollon, Se-mi Kim, Young-Il Kim, et al. (+6)
285 [GO] Journal of Virology 2022―Feb―02 Host cellular RNA helicases regulate SARS-CoV-2 infection Yasuo Ariumi
286 [GO] Clinical Microbiology Reviews 2022―Feb―02 SARS-CoV-2 Infection and Lung Regeneration Fuxiaonan Zhao, Qingwen Ma, Qing Yue, Huaiyong Chen
287 [GO] Journal of Clinical Microbiology 2022―Feb―02 Development of the one-step qualitative RT-PCR assay to detect SARS-CoV-2 Omicron (B.1.1.529) variant in respiratory specimens Tung Phan, Stephanie Boes, Melissa McCullough, Jamie Gribschaw, Jane Marsh, Lee H. Harrison, Alan Wells
288 [GO] Microbiology Spectrum 2022―Feb―02 Sensitivity and Specificity of SARS-CoV-2 Rapid Antigen Detection Tests Using Oral, Anterior Nasal, and Nasopharyngeal Swabs: a Diagnostic Accuracy Study Michael Wölfl-Duchek, Felix Bergmann, Anselm Jorda, Maria Weber, Matthias Müller, Tamara Seitz, et al. (+8)
289 [GO] mBio 2022―Feb―01 Gasdermin D Inhibits Coronavirus Infection by Promoting the Noncanonical Secretion of Beta Interferon Liyuan Zhao, Liang Li, Mei Xue, Xiang Liu, Chengfan Jiang, Wenzhe Wang, et al. (+4)
290 [GO] mBio 2022―Feb―01 The E3 Ubiquitin Ligase RNF5 Facilitates SARS-CoV-2 Membrane Protein-Mediated Virion Release Zhen Yuan, Bing Hu, Hurong Xiao, Xuan Tan, Yan Li, Ke Tang, et al. (+4)
291 [GO] mBio 2022―Feb―01 Co-administration of Favipiravir and the Remdesivir Metabolite GS-441524 Effectively Reduces SARS-CoV-2 Replication in the Lungs of the Syrian Hamster Model Shiho Chiba, Maki Kiso, Noriko Nakajima, Shun Iida, Tadashi Maemura, Makoto Kuroda, et al. (+14)
292 [GO] Microbiology Resource Announcements 2022―Jan―27 Genome Sequencing of Wastewater Confirms the Arrival of the SARS-CoV-2 Omicron Variant at Frankfurt Airport but Limited Spread in the City of Frankfurt, Germany, in November 2021 Shelesh Agrawal, Laura Orschler, Simona Tavazzi, Robert Greither, Bernd Manfred Gawlik, Susanne Lackner, Simon Roux
293 [GO] Microbiology Resource Announcements 2022―Jan―27 Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India Ambica Rangaiah, Sathyanarayan Muthur Shankar, Shashiraja Padukone, Kusuma Gowdra Rangappa, Shantala Gowdara Basawarajappa, Jelle Matthijnssens
294 [GO] Journal of Virology 2022―Jan―26 Stable Cell Clones Harboring Self-Replicating SARS-CoV-2 RNAs for Drug Screen Shufeng Liu, Chao-Kai Chou, Wells W. Wu, Binquan Luan, Tony T. Wang
295 [GO] Journal of Virology 2022―Jan―26 Evaluating antibody mediated protection against Alpha, Beta, and Delta SARS-CoV-2 variants of concern in K18-hACE2 transgenic mice Ting Y. Wong, Alexander M. Horspool, Brynnan P. Russ, Chengjin Ye, Katherine S. Lee, Michael T. Winters, et al. (+15)
296 [GO] Microbiology Spectrum 2022―Jan―26 Limited Variation between SARS-CoV-2-Infected Individuals in Domain Specificity and Relative Potency of the Antibody Response against the Spike Glycoprotein Hanora A. Van Ert, Dana W. Bohan, Kai Rogers, Mohammad Fili, Roberth A. Rojas Chávez, Enya Qing, et al. (+16)
297 [GO] Journal of Virology 2022―Jan―26 Tumor Susceptibility Gene 101 (TSG101) Contributes to Virion Formation of Porcine Reproductive and Respiratory Syndrome Virus via Interaction with the Nucleocapsid (N) Protein along with the Early Secretory Pathway Longxiang Zhang, Rui Li, Rui Geng, Lei Wang, Xin-xin Chen, Songlin Qiao, Gaiping Zhang
298 [GO] mBio 2022―Jan―25 Great Expectations of COVID-19 Herd Immunity Luca T. Giurgea, David M. Morens, Jacob Yount
299 [GO] mBio 2022―Jan―25 N7-Methylation of the Coronavirus RNA Cap Is Required for Maximal Virulence by Preventing Innate Immune Recognition Ruangang Pan, Eveline Kindler, Liu Cao, Yu Zhou, Zhen Zhang, Qianyun Liu, et al. (+10)
300 [GO] mBio 2022―Jan―25 Hamsters Expressing Human Angiotensin-Converting Enzyme 2 Develop Severe Disease following Exposure to SARS-CoV-2 Joseph W. Golden, Rong Li, Curtis R. Cline, Xiankun Zeng, Eric M. Mucker, Amadeo J. Fuentes-Lao, et al. (+16)
301 [GO] mBio 2022―Jan―25 Longitudinal Study after Sputnik V Vaccination Shows Durable SARS-CoV-2 Neutralizing Antibodies and Reduced Viral Variant Escape to Neutralization over Time María M. Gonzalez Lopez Ledesma, Lautaro Sanchez, Diego S. Ojeda, Santiago Oviedo Rouco, Andrés H. Rossi, Augusto Varese, et al. (+51)
302 [GO] mBio 2022―Jan―25 Serological Markers of SARS-CoV-2 Reinfection Sameed M. Siddiqui, Kathryn A. Bowman, Alex L. Zhu, Stephanie Fischinger, Samuel Beger, Jenny S. Maron, et al. (+26)
303 [GO] mSystems 2022―Jan―25 Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure” Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+27)
304 [GO] Journal of Virology 2022―Jan―19 Identification of amino acids within non-structural proteins 10 and 14 of the avian coronavirus infectious bronchitis virus that result in attenuation in vivo and in ovo . Sarah Keep, Phoebe Stevenson-Leggett, Giulia Dowgier, Holly Everest, Graham Freimanis, Michael Oade, et al. (+7)
305 [GO] Microbiology Spectrum 2022―Jan―19 Antibody Responses to BNT162b2 Vaccination in Japan: Monitoring Vaccine Efficacy by Measuring IgG Antibodies against the Receptor-Binding Domain of SARS-CoV-2 Hidetsugu Fujigaki, Yasuko Yamamoto, Takenao Koseki, Sumi Banno, Tatsuya Ando, Hiroyasu Ito, et al. (+15)
306 [GO] Microbiology Spectrum 2022―Jan―19 Performance of Three Tests for SARS-CoV-2 on a University Campus Estimated Jointly with Bayesian Latent Class Modeling T. Alex Perkins, Melissa Stephens, Wendy Alvarez Barrios, Sean Cavany, Liz Rulli, Michael E. Pfrender, Jennifer Dien Bard
307 [GO] Journal of Clinical Microbiology 2022―Jan―19 Differentiation of SARS-CoV-2 previously infected and vaccinated individuals in an inner-city emergency department Evan J Beck, Yu-Hsiang Hsieh, Reinaldo E Fernandez, Gaby Dashler, Emily R Egbert, Shawn A Truelove, et al. (+14)
308 [GO] Journal of Virology 2022―Jan―19 The "LLQY" motif on SARS-CoV-2 spike protein affects S incorporation into virus particles Shouwen Du, Wang Xu, Yuhang Wang, Letian Li, Pengfei Hao, Mingyao Tian, et al. (+10)
309 [GO] Microbiology Spectrum 2022―Jan―19 SARS-CoV-2 Spike Protein Destabilizes Microvascular Homeostasis Soumya Panigrahi, Tamal Goswami, Brian Ferrari, Christopher J. Antonelli, Douglas A. Bazdar, Hannah Gilmore, et al. (+4)
310 [GO] mBio 2022―Jan―18 Vaccinating Children against COVID-19: Commentary and Mathematical Modeling Michael T. Hawkes, Michael F. Good, Melinda M. Pettigrew
311 [GO] mBio 2022―Jan―18 JIB-04 Has Broad-Spectrum Antiviral Activity and Inhibits SARS-CoV-2 Replication and Coronavirus Pathogenesis Juhee Son, Shimeng Huang, Qiru Zeng, Traci L. Bricker, James Brett Case, Jinzhu Zhou, et al. (+26)
312 [GO] mBio 2022―Jan―18 Human Nasal Epithelial Cells Sustain Persistent SARS-CoV-2 Infection In Vitro , despite Eliciting a Prolonged Antiviral Response Akshamal M. Gamage, Kai Sen Tan, Wharton O. Y. Chan, Zhe Zhang Ryan Lew, Jing Liu, Chee Wah Tan, et al. (+11)
313 [GO] Microbiology Spectrum 2022―Jan―12 Outbreak of NDM-1-Producing Escherichia coli in a Coronavirus Disease 2019 Intensive Care Unit in a Mexican Tertiary Care Center Oscar A. Fernández-García, María F. González-Lara, Marco Villanueva-Reza, Nereyda de-León-Cividanes, Luis F. Xancal-Salvador, Verónica Esteban-Kenel, et al. (+9)
314 [GO] Journal of Virology 2022―Jan―12 Rapid SARS-CoV-2 Adaptation to Available Cellular Proteases M. Zeeshan Chaudhry, Kathrin Eschke, Markus Hoffmann, Martina Grashoff, Leila Abassi, Yeonsu Kim, et al. (+6)
315 [GO] Journal of Clinical Microbiology 2022―Jan―12 A pilot study for the evaluation of an interferon-gamma release assay (IGRA) to measure T-cell immune responses after SARS-CoV-2 infection or vaccination in a unique cloistered cohort Pablo Barreiro, Juan Carlos Sanz, Jesús San Román, Marta Pérez-Abeledo, Mar Carretero, Gregoria Megías, et al. (+7)
316 [GO] Microbiology Spectrum 2022―Jan―12 Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico Celia Boukadida, Blanca Taboada, Marina Escalera-Zamudio, Pavel Isa, José Ernesto Ramírez-González, Joel Armando Vazquez-Perez, et al. (+16)
317 [GO] Microbiology Spectrum 2022―Jan―12 SARS-CoV-2 N Gene G29195T Point Mutation May Affect Diagnostic Reverse Transcription-PCR Detection Karrie K. K. Ko, Nurdyana Binte Abdul Rahman, Shireen Yan Ling Tan, Kenneth X. L. Chan, Sui Sin Goh, James Heng Chiak Sim, et al. (+7)
318 [GO] Microbiology Spectrum 2022―Jan―12 A Trans-Governmental Collaboration to Independently Evaluate SARS-CoV-2 Serology Assays Ligia A. Pinto, Ribhi M. Shawar, Brendan O’Leary, Troy J. Kemp, James Cherry, Natalie Thornburg, et al. (+14)
319 [GO] mBio 2022―Jan―11 Rapid Protection from COVID-19 in Nonhuman Primates Vaccinated Intramuscularly but Not Intranasally with a Single Dose of a Vesicular Stomatitis Virus-Based Vaccine Wakako Furuyama, Kyle Shifflett, Amanda N. Pinski, Amanda J. Griffin, Friederike Feldmann, Atsushi Okumura, et al. (+10)
320 [GO] mBio 2022―Jan―11 Coronaviruses Nsp5 Antagonizes Porcine Gasdermin D-Mediated Pyroptosis by Cleaving Pore-Forming p30 Fragment Fushan Shi, Qian Lv, Tingjun Wang, Jidong Xu, Wei Xu, Yuhua Shi, et al. (+9)
321 [GO] mBio 2022―Jan―11 Targeting the Fusion Process of SARS-CoV-2 Infection by Small Molecule Inhibitors Seung Bum Park, Parker Irvin, Zongyi Hu, Mohsin Khan, Xin Hu, Qiru Zeng, et al. (+9)
322 [GO] mBio 2022―Jan―11 Alpha-Soluble NSF Attachment Protein Prevents the Cleavage of the SARS-CoV-2 Spike Protein by Functioning as an Interferon-Upregulated Furin Inhibitor Jinliang Wang, Jie Luo, Zhiyuan Wen, Xinxin Wang, Lei Shuai, Gongxun Zhong, et al. (+9)
323 [GO] Journal of Clinical Microbiology 2022―Jan―05 Combination of mycological criteria: a better surrogate to identify COVID-19 associated pulmonary aspergillosis patients and evaluate prognosis? Sarah Dellière, Emmanuel Dudoignon, Sébastian Voicu, Magalie Collet, Sofiane Fodil, Benoit Plaud, et al. (+7)
324 [GO] Journal of Virology 2022―Jan―05 Activation of the MKK3-p38-MK2-ZFP36 axis by coronavirus infection restricts the upregulation of AU-rich element-containing transcripts in proinflammatory response Shumin Li, Siying Liu, Rui Ai Chen, Mei Huang, To Sing Fung, Ding Xiang Liu
325 [GO] Applied and Environmental Microbiology 2022―Jan―05 Nanobody-Functionalized Cellulose for Capturing SARS-CoV-2 Xin Sun, Shaobo Yang, Amal A. Al-Dossary, Shana Broitman, Yun Ni, Ming Guan, et al. (+2)
326 [GO] Applied and Environmental Microbiology 2022―Jan―05 A sensitive and rapid wastewater test for SARS-COV-2 and its use for the early detection of a cluster of cases in a remote community Jade Daigle, Kathleen Racher, Justin Hazenberg, Allan Yeoman, Heather Hannah, Diep Duong, et al. (+11)
327 [GO] Journal of Clinical Microbiology 2022―Jan―05 Collaboration between clinical and academic laboratories for sequencing SARS-CoV-2 genomes Jeremy Wang, Shawn E. Hawken, Corbin D. Jones, Robert S. Hagan, Frederic Bushman, John Everett, et al. (+2)
328 [GO] Microbiology Spectrum 2022―Jan―05 Nosocomial Transmission of SARS-CoV-2 Involving Vaccinated Health Care Workers Laura Pérez-Lago, Marina Machado, María de Mar Gómez-Ruiz, Pedro J. Sola-Campoy, Sergio Buenestado-Serrano, Victor Manuel de la Cueva-García, et al. (+10)
329 [GO] Microbiology Spectrum 2022―Jan―05 SARS-CoV-2 Variant of Concern B.1.1.7: Diagnostic Sensitivity of Three Antigen-Detecting Rapid Tests Andreas K. Lindner, Lisa J. Krüger, Olga Nikolai, Julian A. F. Klein, Heike Rössig, Paul Schnitzler, et al. (+10)
330 [GO] Microbiology Spectrum 2022―Jan―05 Cyclosporine A Inhibits Viral Infection and Release as Well as Cytokine Production in Lung Cells by Three SARS-CoV-2 Variants Claudio Fenizia, Silvia Galbiati, Claudia Vanetti, Riccardo Vago, Mario Clerici, Carlo Tacchetti, et al. (+2)
331 [GO] Microbiology Spectrum 2022―Jan―05 Developing an Amplification Refractory Mutation System-Quantitative Reverse Transcription-PCR Assay for Rapid and Sensitive Screening of SARS-CoV-2 Variants of Concern Dongyan Xiong, Xiaoxu Zhang, Mengjuan Shi, Nuo Wang, Ping He, Zhuo Dong, et al. (+6)
332 [GO] Applied and Environmental Microbiology 2022―Jan―05 A Sensitive and Rapid Wastewater Test for SARS-COV-2 and Its Use for the Early Detection of a Cluster of Cases in a Remote Community Jade Daigle, Kathleen Racher, Justin Hazenberg, Allan Yeoman, Heather Hannah, Diep Duong, et al. (+12)
333 [GO] Journal of Clinical Microbiology 2022―Jan―05 Combination of Mycological Criteria: a Better Surrogate to Identify COVID-19-Associated Pulmonary Aspergillosis Patients and Evaluate Prognosis? Sarah Dellière, Emmanuel Dudoignon, Sébastian Voicu, Magalie Collet, Sofiane Fodil, Benoit Plaud, et al. (+8)
334 [GO] Journal of Clinical Microbiology 2022―Jan―05 Collaboration between Clinical and Academic Laboratories for Sequencing SARS-CoV-2 Genomes Jeremy Wang, Shawn E. Hawken, Corbin D. Jones, Robert S. Hagan, Frederic Bushman, John Everett, et al. (+3)
335 [GO] mBio 2022―Jan―04 Pandemic Influenza Infection Promotes Streptococcus pneumoniae Infiltration, Necrotic Damage, and Proteomic Remodeling in the Heart Maryann P. Platt, Yi-Han Lin, Rosana Wiscovitch-Russo, Yanbao Yu, Norberto Gonzalez-Juarbe, Justin A. Thornton
336 [GO] Antimicrobial Agents and Chemotherapy 2022―Jan―03 Reply to Casalini et al., “Bacterial Coinfections in COVID-19 Patients without a Positive Microbiologic Result: a Word of Caution” Jonathan Baghdadi, Sarah Bejo, Anthony Harris
337 [GO] Antimicrobial Agents and Chemotherapy 2022―Jan―03 Bacterial Coinfections in COVID-19 Patients without a Positive Microbiologic Result: a Word of Caution Giacomo Casalini, Giacomo Pozza, Andrea Giacomelli, Spinello Antinori
338 [GO] Microbiology Spectrum 2021―Dec―22 Identification of HLA-A*24:02-Restricted CTL Candidate Epitopes Derived from the Nonstructural Polyprotein 1a of SARS-CoV-2 and Analysis of Their Conservation Using the Mutation Database of SARS-CoV-2 Variants Akira Takagi, Masanori Matsui, Yongjun Sui
339 [GO] Journal of Virology 2021―Dec―22 SARS-CoV-2 and Influenza A virus Co-infections in Ferrets Ying Huang, Amanda L. Skarlupka, Hyesun Jang, Uriel Blas-Machado, Nathan Holladay, R. Jeffrey Hogan, Ted M. Ross
340 [GO] Journal of Clinical Microbiology 2021―Dec―22 Assessment of the analytical sensitivity of ten lateral flow devices against the SARS-CoV-2 omicron variant Joshua Deerain, Julian Druce, Thomas Tran, Mitchell Batty, Yano Yoga, Michael Fennell, et al. (+3)
341 [GO] Journal of Virology 2021―Dec―22 Microglia do not restrict SARS-CoV-2 replication following infection of the central nervous system of K18-hACE2 transgenic mice Gema M. Olivarria, Yuting Cheng, Susana Furman, Collin Pachow, Lindsay A. Hohsfield, Charlene Smith-Geater, et al. (+12)
342 [GO] Journal of Virology 2021―Dec―22 A hybrid soluble gp130/spike-nanobody fusion protein simultaneously blocks IL-6 trans-signaling and cellular infection with SARS-CoV2 Julia Ettich, Julia Werner, Hendrik T. Weitz, Eva Mueller, Roland Schwarzer, Philipp A. Lang, et al. (+2)
343 [GO] Journal of Virology 2021―Dec―22 A Hybrid Soluble gp130/Spike-Nanobody Fusion Protein Simultaneously Blocks Interleukin-6 trans -Signaling and Cellular Infection with SARS-CoV-2 Julia Ettich, Julia Werner, Hendrik T. Weitz, Eva Mueller, Roland Schwarzer, Philipp A. Lang, et al. (+3)
344 [GO] Journal of Virology 2021―Dec―22 SARS-CoV-2 and Influenza A Virus Coinfections in Ferrets Ying Huang, Amanda L. Skarlupka, Hyesun Jang, Uriel Blas-Machado, Nathan Holladay, R. Jeffrey Hogan, et al. (+2)
345 [GO] mBio 2021―Dec―21 Drug Combinations as a First Line of Defense against Coronaviruses and Other Emerging Viruses Judith M. White, Joshua T. Schiffer, Rachel A. Bender Ignacio, Shuang Xu, Denis Kainov, Aleksandr Ianevski, et al. (+5)
346 [GO] Journal of Clinical Microbiology 2021―Dec―16 Quantitative SARS-CoV-2 viral-load curves in paired saliva and nasal swabs inform appropriate respiratory sampling site and analytical test sensitivity required for earliest viral detection Emily S. Savela, Alexander Winnett, Anna E. Romano, Michael K. Porter, Natasha Shelby, Reid Akana, et al. (+10)
347 [GO] Journal of Clinical Microbiology 2021―Dec―16 Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection Emily S. Savela, Alexander Viloria Winnett, Anna E. Romano, Michael K. Porter, Natasha Shelby, Reid Akana, et al. (+11)
348 [GO] Microbiology Spectrum 2021―Dec―15 Testing Denmark: a Danish Nationwide Surveillance Study of COVID-19 Kamille Fogh, Jarl E. Strange, Bibi F. S. S. Scharff, Alexandra R. R. Eriksen, Rasmus B. Hasselbalch, Henning Bundgaard, et al. (+29)
349 [GO] Journal of Virology 2021―Dec―15 A Single Vaccine Protects against SARS-CoV-2 and Influenza Virus in Mice Kangli Cao, Xiang Wang, Haoran Peng, Longfei Ding, Xiangwei Wang, Yangyang Hu, et al. (+12)
350 [GO] Microbiology Spectrum 2021―Dec―15 Serological Detection of SARS-CoV-2 IgG Using Commercially Available Enzyme Immunoassays on Dried Blood Spots Collected from Patients Gregory J. Walker, Rebecca Davis, Zin Naing, Brad McEntee, Yonghui Lu, Tatijana Denadija, et al. (+2)
351 [GO] Journal of Virology 2021―Dec―15 Comparison of experimental MERS-CoV infection acquired by three individual routes of infection in the common marmoset Michelle Nelson, Lyn M. O’Brien, Carwyn Davies, Emma Keyser, Wendy Butcher, Sophie J Smither, et al. (+3)
352 [GO] Journal of Virology 2021―Dec―15 Identification of a Novel Neutralizing Epitope on the N-Terminal Domain of the Human Coronavirus 229E Spike Protein Jiale Shi, Yuejun Shi, Ruixue Xiu, Gang Wang, Rui Liang, Yuzhou Jiao, et al. (+4)
353 [GO] Journal of Virology 2021―Dec―15 Comparison of Experimental Middle East Respiratory Syndrome Coronavirus Infection Acquired by Three Individual Routes of Infection in the Common Marmoset Michelle Nelson, Lyn M. O’Brien, Carwyn Davies, Emma Keyser, Wendy Butcher, Sophie J. Smither, et al. (+4)
354 [GO] Journal of Virology 2021―Dec―15 A Single Vaccine Protects against SARS-CoV-2 and Influenza Virus in Mice Kangli Cao, Xiang Wang, Haoran Peng, Longfei Ding, Xiangwei Wang, Yangyang Hu, et al. (+13)
355 [GO] Antimicrobial Agents and Chemotherapy 2021―Dec―13 Early Use of Sarilumab in Patients Hospitalised with COVID-19 Pneumonia and Features of Systemic Inflammation. Nicolás Merchante, Sheila Cárcel, José Carlos Garrido-Gracia, Marta Trigo-Rodríguez, María Ángeles Esteban Moreno, Rafael León-López, et al. (+14)
356 [GO] Antimicrobial Agents and Chemotherapy 2021―Dec―13 Early Use of Sarilumab in Patients Hospitalized with COVID-19 Pneumonia and Features of Systemic Inflammation: the SARICOR Randomized Clinical Trial Nicolás Merchante, Sheila Cárcel, José Carlos Garrido-Gracia, Marta Trigo-Rodríguez, María Ángeles Esteban Moreno, Rafael León-López, et al. (+14)
357 [GO] Microbiology Resource Announcements 2021―Dec―09 SARS-CoV-2 Genome Sequences, Including One with an ORF7a Deletion, Obtained from Patients in Bangladesh Mizanur Rahman, Rummana Rahim, Abu Hasan, Naoko Kawai, Lavel Chinyama Moonga, Tatsuki Sugi, et al. (+3)
358 [GO] Microbiology Spectrum 2021―Dec―08 COVID-19 Antibody Detection and Assay Performance Using Red Cell Agglutination Kshitij Srivastava, Kamille A. West, Valeria De Giorgi, Michael R. Holbrook, Nicolai V. Bovin, Stephen M. Henry, et al. (+2)
359 [GO] Microbiology Spectrum 2021―Dec―08 A Cold Chain-Independent Specimen Collection and Transport Medium Improves Diagnostic Sensitivity and Minimizes Biosafety Challenges of COVID-19 Molecular Diagnosis Vikram Saini, Priya Kalra, Manish Sharma, Chhavi Rai, Vikas Saini, Kamini Gautam, et al. (+5)
360 [GO] Microbiology Spectrum 2021―Dec―08 Amino Acid Metabolism is Significantly Altered at the Time of Admission in Hospital for Severe COVID-19 Patients: Findings from Longitudinal Targeted Metabolomics Analysis Laura Ansone, Monta Briviba, Ivars Silamikelis, Anna Terentjeva, Ingus Perkons, Liga Birzniece, et al. (+7)
361 [GO] Journal of Virology 2021―Dec―08 Analysis of B cell receptor repertoires reveals key signatures of systemic B cell response after SARS-CoV-2 infection Yudi Zhang, Qihong Yan, Kun Luo, Ping He, Ruitian Hou, Xinwei Zhao, et al. (+15)
362 [GO] Microbiology Spectrum 2021―Dec―08 Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein James J. Davis, S. Wesley Long, Paul A. Christensen, Randall J. Olsen, Robert Olson, Maulik Shukla, et al. (+4)
363 [GO] Journal of Virology 2021―Dec―08 Analysis of B Cell Receptor Repertoires Reveals Key Signatures of the Systemic B Cell Response after SARS-CoV-2 Infection Yudi Zhang, Qihong Yan, Kun Luo, Ping He, Ruitian Hou, Xinwei Zhao, et al. (+16)
364 [GO] mBio 2021―Dec―07 Previous Infection Combined with Vaccination Produces Neutralizing Antibodies with Potency against SARS-CoV-2 Variants F. Javier Ibarrondo, Christian Hofmann, Ayub Ali, Paul Ayoub, Donald B. Kohn, Otto O. Yang, et al. (+2)
365 [GO] Microbiology Resource Announcements 2021―Dec―02 Genome Sequencing of the SARS-CoV-2 Delta (B.1.617.2) Variant of Concern Detected in Bangladesh Tanjina Akhtar Banu, M. Murshed Hasan Sarkar, Shahina Akter, Barna Goswami, Iffat Jahan, Eshrar Osman, et al. (+10)
366 [GO] Microbiology Resource Announcements 2021―Dec―02 Coding-Complete Genome Sequences of Alpha and Delta SARS-CoV-2 Variants from Kamphaeng Phet Province, Thailand, from May to July 2021 Kanyarat Phutthasophit, Darunee Buddhari, Piyawan Chinnawirotpisan, Khajohn Joonlasak, Wudtichai Manasatienkij, Angkana Huang, et al. (+9)
367 [GO] Microbiology Spectrum 2021―Dec―01 Implementation and Accuracy of BinaxNOW Rapid Antigen COVID-19 Test in Asymptomatic and Symptomatic Populations in a High-Volume Self-Referred Testing Site Zishan K. Siddiqui, Mihir Chaudhary, Matthew L. Robinson, Anna B. McCall, Ria Peralta, Rogette Esteve, et al. (+8)
368 [GO] mSphere 2021―Dec―01 Metabolites with SARS-CoV-2 Inhibitory Activity Identified from Human Microbiome Commensals Frank J. Piscotta, Hans-Heinrich Hoffmann, Young Joo Choi, Gabriel I. Small, Alison W. Ashbrook, Bimal Koirala, et al. (+5)
369 [GO] Journal of Clinical Microbiology 2021―Dec―01 A Dual-Antigen SARS-CoV-2 Serological Assay Reflects Antibody Avidity Yu Nakagama, Yuko Nitahara, Natsuko Kaku, Evariste Tshibangu-Kabamba, Yasutoshi Kido
370 [GO] Microbiology Spectrum 2021―Dec―01 Age-Dependent Reduction in Neutralization against Alpha and Beta Variants of BNT162b2 SARS-CoV-2 Vaccine-Induced Immunity Hitoshi Kawasuji, Yoshitomo Morinaga, Hideki Tani, Yumiko Saga, Makito Kaneda, Yushi Murai, et al. (+9)
371 [GO] Journal of Virology 2021―Dec―01 Development of a Single-cycle Infectious SARS-CoV-2 Virus Replicon Particle System for use in BSL2 Laboratories Johnny Malicoat, Senthamizharasi Manivasagam, Sonia Zuñiga, Isabel Sola, Dianne McCabe, Lijun Rong, et al. (+3)
372 [GO] Journal of Virology 2021―Dec―01 Development of a Single-Cycle Infectious SARS-CoV-2 Virus Replicon Particle System for Use in Biosafety Level 2 Laboratories Johnny Malicoat, Senthamizharasi Manivasagam, Sonia Zuñiga, Isabel Sola, Dianne McCabe, Lijun Rong, et al. (+4)
373 [GO] Journal of Clinical Microbiology 2021―Dec―01 A Dual-Antigen SARS-CoV-2 Serological Assay Reflects Antibody Avidity Yu Nakagama, Yuko Nitahara, Natsuko Kaku, Evariste Tshibangu-Kabamba, Yasutoshi Kido, Alexander J. McAdam
374 [GO] Microbiology Spectrum 2021―Nov―24 Plasma gp96 is a Novel Predictive Biomarker for Severe COVID-19 Rongguo Wei, Biyan Zhou, Shaohua Li, Debin Zhong, Boan Li, Jianqiu Qin, et al. (+8)
375 [GO] Microbiology Spectrum 2021―Nov―24 Comparison of the Performance of the PanBio COVID-19 Antigen Test in SARS-CoV-2 B.1.1.7 (Alpha) Variants versus non-B.1.1.7 Variants M. L. van Ogtrop, T. J. W. van de Laar, D. Eggink, J. W. Vanhommerig, W. A. van der Reijden, S. Wesley Long
376 [GO] Microbiology Spectrum 2021―Nov―24 SARS-CoV-2 Infection of Rhesus Macaques Treated Early with Human COVID-19 Convalescent Plasma Jesse D. Deere, Timothy D. Carroll, Joseph Dutra, Linda Fritts, Rebecca Lee Sammak, JoAnn L. Yee, et al. (+22)
377 [GO] Journal of Virology 2021―Nov―24 Highly Neutralizing COVID-19 Convalescent Plasmas Potently Block SARS-CoV-2 Replication and Pneumonia in Syrian Hamsters Yuki Takamatsu, Masaki Imai, Kenji Maeda, Noriko Nakajima, Nobuyo Higashi-Kuwata, Kiyoko Iwatsuki-Horimoto, et al. (+8)
378 [GO] Journal of Virology 2021―Nov―24 Are COVID-19 Vaccine Boosters Needed? The Science behind Boosters Rachel M. Burckhardt, John J. Dennehy, Leo L. M. Poon, Linda J. Saif, Lynn W. Enquist
379 [GO] Journal of Virology 2021―Nov―24 The N-terminal Region of Middle East Respiratory Syndrome Coronavirus Accessory Protein 8b is Essential for Enhanced Virulence of an Attenuated Murine Coronavirus Yuming Li, Yingkang Jin, Lijun Kuang, Zhenhua Luo, Fang Li, Jing Sun, et al. (+9)
380 [GO] Microbiology Spectrum 2021―Nov―24 Usefulness of ELISA Using Total Antibody against Plant-Expressed Recombinant Nucleocapsid Protein of SARS-CoV-2 Misbah Tariq, Jian Hur, Jun-Won Seo, Da Young Kim, Na Ra Yun, You Mi Lee, et al. (+13)
381 [GO] Journal of Virology 2021―Nov―24 Age-related susceptibility of ferrets to SARS-CoV-2 infection Mathias Martins, Maureen H.V. Fernandes, Lok R. Joshi, Diego G. Diel
382 [GO] Microbiology Resource Announcements 2021―Nov―24 Whole-Genome Sequences of SARS-CoV-2 Isolates from the Dominican Republic R. Paulino-Ramirez, E. Riego, A. Vallejo-Degaudenzi, V. V. Calderon, L. Tapia, Patricia León, et al. (+6)
383 [GO] mSphere 2021―Nov―24 High SARS-CoV-2 Seroprevalence in Rural Peru, 2021: a Cross-Sectional Population-Based Study Andres Moreira-Soto, Johanna Maribel Pachamora Diaz, Lilian González-Auza, Xiomara Jeanleny Merino Merino, Alvaro Schwalb, Christian Drosten, et al. (+7)
384 [GO] Journal of Virology 2021―Nov―24 Glycosylation and disulfide bonding of wild-type SARS-CoV-2 spike glycoprotein Shijian Zhang, Eden P. Go, Haitao Ding, Saumya Anang, John C. Kappes, Heather Desaire, Joseph G. Sodroski
385 [GO] Microbiology Spectrum 2021―Nov―24 Evaluation of Humoral Immune Response after SARS-CoV-2 Vaccination Using Two Binding Antibody Assays and a Neutralizing Antibody Assay Minjeong Nam, Jong Do Seo, Hee-Won Moon, Hanah Kim, Mina Hur, Yeo-Min Yun, Smita S. Iyer
386 [GO] Microbiology Resource Announcements 2021―Nov―24 Coding-Complete Genome Sequence of a SARS-CoV-2 Variant Obtained from Raw Sewage at the University of Tennessee-Knoxville Campus K. T. Ash, I. Alamilla, Y. Li, D. C. Joyner, D. E. Williams, P. J. McKay, et al. (+7)
387 [GO] Journal of Virology 2021―Nov―24 Are COVID-19 Vaccine Boosters Needed? The Science behind Boosters Rachel M. Burckhardt, John J. Dennehy, Leo L. M. Poon, Linda J. Saif, Lynn W. Enquist, Rozanne M. Sandri-Goldin
388 [GO] Journal of Virology 2021―Nov―24 Age-Related Susceptibility of Ferrets to SARS-CoV-2 Infection Mathias Martins, Maureen H. V. Fernandes, Lok R. Joshi, Diego G. Diel, Tom Gallagher
389 [GO] Journal of Virology 2021―Nov―24 Analysis of Glycosylation and Disulfide Bonding of Wild-Type SARS-CoV-2 Spike Glycoprotein Shijian Zhang, Eden P. Go, Haitao Ding, Saumya Anang, John C. Kappes, Heather Desaire, et al. (+2)
390 [GO] Journal of Virology 2021―Nov―24 Highly Neutralizing COVID-19 Convalescent Plasmas Potently Block SARS-CoV-2 Replication and Pneumonia in Syrian Hamsters Yuki Takamatsu, Masaki Imai, Kenji Maeda, Noriko Nakajima, Nobuyo Higashi-Kuwata, Kiyoko Iwatsuki-Horimoto, et al. (+9)
391 [GO] mBio 2021―Nov―23 Golden Syrian Hamsters as a Model for Revisiting the Role of Biological Sex Differences in SARS-CoV-2 Infection Rafael Tomoya Michita, Indira U. Mysorekar
392 [GO] mSystems 2021―Nov―23 A Genetic Trap in Yeast for Inhibitors of SARS-CoV-2 Main Protease Hanna Alalam, Sunniva Sigurdardóttir, Catarina Bourgard, Ievgeniia Tiukova, Ross D. King, Morten Grøtli, et al. (+2)
393 [GO] Antimicrobial Agents and Chemotherapy 2021―Nov―22 A photoactivable natural product with broad antiviral activity against enveloped viruses including highly pathogenic coronaviruses Thomas Meunier, Lowiese Desmarets, Simon Bordage, Moussa Bamba, Kévin Hervouet, Yves Rouillé, et al. (+10)
394 [GO] Microbiology Spectrum 2021―Nov―17 Single-Point Mutations in the N Gene of SARS-CoV-2 Adversely Impact Detection by a Commercial Dual Target Diagnostic Assay Sharon Miller, Terence Lee, Adam Merritt, Todd Pryce, Avram Levy, David Speers, Yun Young Go
395 [GO] Microbiology Spectrum 2021―Nov―17 Postvaccination SARS-COV-2 among Health Care Workers in New Jersey: A Genomic Epidemiological Study Barun Mathema, Liang Chen, Kar Fai Chow, Yanan Zhao, Michael C. Zody, Jose R. Mediavilla, et al. (+18)
396 [GO] Microbiology Spectrum 2021―Nov―17 SARS-CoV-2 B.1.1.7 Decline Is Not Driven by the Introduction of a More Successful Variant Cristina Rodríguez-Grande, Sergio Buenestado-Serrano, Luis Alcalá, Pedro J. Sola-Campoy, Andrea Molero-Salinas, Álvaro Otero-Sobrino, et al. (+10)
397 [GO] Microbiology Spectrum 2021―Nov―17 Prolonged SARS-CoV-2 Positivity in Immunocompetent Patients: Virus Isolation, Genomic Integrity, and Transmission Risk Isabela de Carvalho Leitão, Pedro Telles Calil, Rafael Mello Galliez, Filipe Romero Rebello Moreira, Diana Mariani, Anna Carla Pinto Castiñeiras, et al. (+17)
398 [GO] Microbiology Spectrum 2021―Nov―17 A Highly Sensitive and Specific SARS-CoV-2 Spike- and Nucleoprotein-Based Fluorescent Multiplex Immunoassay (FMIA) to Measure IgG, IgA, and IgM Class Antibodies Anna Solastie, Camilla Virta, Anu Haveri, Nina Ekström, Anu Kantele, Simo Miettinen, et al. (+7)
399 [GO] Microbiology Spectrum 2021―Nov―17 SARS-CoV-2 Variants and Their Relevant Mutational Profiles: Update Summer 2021 Mohammad Alkhatib, Valentina Svicher, Romina Salpini, Francesca Alessandra Ambrosio, Maria Concetta Bellocchi, Luca Carioti, et al. (+8)
400 [GO] Microbiology Spectrum 2021―Nov―17 A Novel Strategy for the Detection of SARS-CoV-2 Variants Based on Multiplex PCR-Mass Spectrometry Minisequencing Technology Fei Zhao, Jinxing Lu, Bing Lu, Tian Qin, Xuemei Wang, Xuexin Hou, et al. (+10)
401 [GO] Microbiology Spectrum 2021―Nov―17 CRISPR-Cas12a-Based Detection for the Major SARS-CoV-2 Variants of Concern Yuanhao Liang, Hongqing Lin, Lirong Zou, Jianhui Zhao, Baisheng Li, Haiying Wang, et al. (+6)
402 [GO] Microbiology Spectrum 2021―Nov―17 Evaluating Humoral Immunity against SARS-CoV-2: Validation of a Plaque-Reduction Neutralization Test and a Multilaboratory Comparison of Conventional and Surrogate Neutralization Assays Emelissa J. Valcourt, Kathy Manguiat, Alyssia Robinson, Yi-Chan Lin, Kento T. Abe, Samira Mubareka, et al. (+25)
403 [GO] Journal of Virology 2021―Nov―17 The Antimalaria Drug Artesunate Inhibits Porcine Reproductive and Respiratory Syndrome Virus Replication via Activating AMPK and Nrf2/HO-1 Signaling Pathways Feixiang Long, Mingxin Zhang, Xia Yang, Xiaohuan Liang, Lizhan Su, Tongqing An, et al. (+5)
404 [GO] mBio 2021―Nov―16 A Previously Undiscovered Circular RNA, circTNFAIP3, and Its Role in Coronavirus Replication Liuyang Du, Xingbo Wang, Junli Liu, Jiarong Li, Shengnan Wang, Jing Lei, et al. (+3)
405 [GO] mBio 2021―Nov―16 Evolutionary and Phenotypic Characterization of Two Spike Mutations in European Lineage 20E of SARS-CoV-2 Paula Ruiz-Rodriguez, Clara Francés-Gómez, Álvaro Chiner-Oms, Mariana G. López, Santiago Jiménez-Serrano, Irving Cancino-Muñoz, et al. (+15)
406 [GO] mBio 2021―Nov―16 A Bacterial Cell-Based Assay To Study SARS-CoV-2 Protein-Protein Interactions Benjamin L. Springstein, Padraig Deighan, Grzegorz J. Grabe, Ann Hochschild, Jeff F. Miller
407 [GO] mBio 2021―Nov―16 Cross-Neutralization of Emerging SARS-CoV-2 Variants of Concern by Antibodies Targeting Distinct Epitopes on Spike Siriruk Changrob, Yanbin Fu, Jenna J. Guthmiller, Peter J. Halfmann, Lei Li, Christopher T. Stamper, et al. (+15)
408 [GO] Microbiology Spectrum 2021―Nov―10 High-Resolution Linear Epitope Mapping of the Receptor Binding Domain of SARS-CoV-2 Spike Protein in COVID-19 mRNA Vaccine Recipients Yuko Nitahara, Yu Nakagama, Natsuko Kaku, Katherine Candray, Yu Michimuko, Evariste Tshibangu-Kabamba, et al. (+7)
409 [GO] Microbiology Spectrum 2021―Nov―10 Diagnosis and Treatment of Bacterial Pneumonia in Critically Ill Patients with COVID-19 Using a Multiplex PCR Assay: A Large Italian Hospital’s Five-Month Experience Brunella Posteraro, Venere Cortazzo, Flora Marzia Liotti, Giulia Menchinelli, Chiara Ippoliti, Giulia De Angelis, et al. (+8)
410 [GO] Microbiology Spectrum 2021―Nov―10 Spike Antibody Titers Evaluation after a 2-Dose Regimen of BNT162b2 Vaccination in Healthcare Workers Previously Infected with SARS-CoV-2 Satoshi Kayukawa, Kengo Nanya, Makoto Morita, Kenji Ina, Yoshihiro Ota, Shinji Hasegawa, Yongjun Sui
411 [GO] Microbiology Spectrum 2021―Nov―10 Sequencing Using a Two-Step Strategy Reveals High Genetic Diversity in the S Gene of SARS-CoV-2 after a High-Transmission Period in Tunis, Tunisia Wasfi Fares, Kais Ghedira, Mariem Gdoura, Anissa Chouikha, Sondes Haddad-Boubaker, Marwa Khedhiri, et al. (+10)
412 [GO] Microbiology Spectrum 2021―Nov―10 Early Adoption of Longitudinal Surveillance for SARS-CoV-2 among Staff in Long-Term Care Facilities: Prevalence, Virologic and Sequence Analysis Emily N. Gallichotte, Kendra M. Quicke, Nicole R. Sexton, Emily Fitzmeyer, Michael C. Young, Ashley J. Janich, et al. (+7)
413 [GO] Microbiology Spectrum 2021―Nov―10 Evaluation of Sample Pooling for SARS-CoV-2 Detection in Nasopharyngeal Swab and Saliva Samples with the Idylla SARS-CoV-2 Test Paul Hofman, Maryline Allegra, Myriam Salah, Jonathan Benzaquen, Virginie Tanga, Olivier Bordone, et al. (+15)
414 [GO] Journal of Virology 2021―Nov―10 A structurally conserved RNA element within SARS-CoV-2 ORF1a RNA and S mRNA regulates translation in response to viral S protein-induced signaling in human lung cells. Abhijit Basu, Srinivasa Penumutchu, Kien Nguyen, Uri Mbonye, Blanton S. Tolbert, Jonathan Karn, et al. (+2)
415 [GO] Microbiology Spectrum 2021―Nov―10 Differences in IgG Antibody Responses following BNT162b2 and mRNA-1273 SARS-CoV-2 Vaccines José G. Montoya, Amy E. Adams, Valérie Bonetti, Sien Deng, Nan A. Link, Suzanne Pertsch, et al. (+5)
416 [GO] Journal of Clinical Microbiology 2021―Nov―10 External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories Fanny Wegner, Tim Roloff, Michael Huber, Samuel Cordey, Alban Ramette, Yannick Gerth, et al. (+46)
417 [GO] Journal of Virology 2021―Nov―10 MicroRNA-376b-3p Promotes Porcine Reproductive and Respiratory Syndrome Virus Replication by Targeting Viral Restriction Factor TRIM22 Jing Chen, Shijie Zhao, Zhiying Cui, Wen Li, Pengli Xu, Huimin Liu, et al. (+6)
418 [GO] mBio 2021―Nov―09 CCR2 Signaling Restricts SARS-CoV-2 Infection Abigail Vanderheiden, Jeronay Thomas, Allison L. Soung, Meredith E. Davis-Gardner, Katharine Floyd, Fengzhi Jin, et al. (+10)
419 [GO] Journal of Virology 2021―Nov―03 Genomic Surveillance Tracks the First Community Outbreak of the SARS-CoV-2 Delta (B.1.617.2) Variant in Brazil Alessandra P. Lamarca, Luiz G. P. de Almeida, Ronaldo da Silva Francisco Junior, Liliane Cavalcante, Douglas Terra Machado, Otávio Brustolini, et al. (+18)
420 [GO] Journal of Clinical Microbiology 2021―Nov―03 Clinical and Infection Prevention Applications of SARS-CoV-2 Genotyping: an IDSA/ASM Consensus Review Document Alexander L. Greninger, Jennifer Dien Bard, Robert C. Colgrove, Erin H. Graf, Kimberly E. Hanson, Mary K. Hayden, et al. (+7)
421 [GO] Microbiology Spectrum 2021―Nov―03 Diagnostic Performance of Self-Collected Saliva Versus Nasopharyngeal Swab for the Molecular Detection of SARS-CoV-2 in the Clinical Setting Mohammad Khaja Mafij Uddin, Tahmina Shirin, Mohammad Enayet Hossain, Ahmed Nawsher Alam, Jenifar Quaiyum Ami, Rashedul Hasan, et al. (+7)
422 [GO] Microbiology Spectrum 2021―Nov―03 Nasopharyngeal Expression of Angiotensin-Converting Enzyme 2 and Transmembrane Serine Protease 2 in Children within SARS-CoV-2-Infected Family Clusters Mohammad Rubayet Hasan, Muneera Naseer Ahmad, Soha Roger Dargham, Hatem Zayed, Alaa Al Hashemi, Nonhlanhla Ngwabi, et al. (+5)
423 [GO] mSystems 2021―Nov―02 Identification and Development of Therapeutics for COVID-19 Halie M. Rando, Nils Wellhausen, Soumita Ghosh, Alexandra J. Lee, Anna Ada Dattoli, Fengling Hu, et al. (+18)
424 [GO] mBio 2021―Nov―02 Interferon-Lambda Intranasal Protection and Differential Sex Pathology in a Murine Model of SARS-CoV-2 Infection Sook-Young Sohn, Janet Hearing, JoAnn Mugavero, Varvara Kirillov, Elena Gorbunova, Luke Helminiak, et al. (+6)
425 [GO] mSystems 2021―Nov―02 Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs Rodolfo A. Salido, Victor J. Cantú, Alex E. Clark, Sandra L. Leibel, Anahid Foroughishafiei, Anushka Saha, et al. (+38)
426 [GO] mBio 2021―Nov―02 Erratum for Zeng et al., “Neutralization of SARS-CoV-2 Variants of Concern Harboring Q677H” Cong Zeng, John P. Evans, Julia N. Faraone, Panke Qu, Yi-Min Zheng, Linda Saif, et al. (+4)
427 [GO] Molecular and Cellular Biology 2021―Nov―01 The Activin/FLRG pathway associates with poor COVID-19 outcomes in hospitalized patients Megan McAleavy, Qian Zhang, Peter J. Ehmann, Jianing Xu, Matthew F. Wipperman, Dharani Ajithdoss, et al. (+11)
428 [GO] Journal of Microbiology and Biology Education 2021―Oct―29 Teaching during the COVID-19 Pandemic: Sharing Results and Data Obtained from the Ames Test Valentina Blanco, Marcos Davyt, Javier García-Alonso, Claudia Piccini, Pablo Zunino, Eliana Rodríguez
429 [GO] Microbiology Spectrum 2021―Oct―27 Mapping SARS-CoV-2 Antibody Epitopes in COVID-19 Patients with a Multi-Coronavirus Protein Microarray David Camerini, Arlo Z. Randall, Krista Trappl-Kimmons, Amit Oberai, Christopher Hung, Joshua Edgar, et al. (+18)
430 [GO] Microbiology Spectrum 2021―Oct―27 Viral Kinetics of Severe Acute Respiratory Syndrome Coronavirus 2 in Patients with Coronavirus Disease 2019 Da Young Kim, Eun Kyung Bae, Jun-Won Seo, Na Ra Yun, Choon-Mee Kim, Dong-Min Kim, Rosemary C. She
431 [GO] Journal of Virology 2021―Oct―27 Distinct Roles of Type I and Type III Interferons During a Native Murine β Coronavirus Lung Infection Lokesh Sharma, Xiaohua Peng, Hua Qing, Brandon K. Hilliard, Jooyoung Kim, Anush Swaminathan, et al. (+18)
432 [GO] Journal of Virology 2021―Oct―27 Reply to Grigoriev et al., “Sequences of SARS-CoV-2 “Hybrids” with the Human Genome: Signs 1 of Non-coding RNA?” Bingyu Yan, Srishti Chakravorty, Carmen Mirabelli, Luopin Wang, Jorge L. Trujillo-Ochoa, Daniel Chauss, et al. (+6)
433 [GO] Journal of Virology 2021―Oct―27 Sequences of SARS-CoV-2 “Hybrids” with the Human Genome: Signs of Non-coding RNA? Andrey Grigoriev, James J. Kelley, Lingyu Guan
434 [GO] Journal of Clinical Microbiology 2021―Oct―27 Performance characteristics of the Abbott BinaxNOW SARS-CoV-2 antigen test in comparison to real-time RT-PCR and viral culture in community testing sites during November 2020 Olivia Almendares, Jessica L. Prince-Guerra, Leisha D. Nolen, Jayleen K.L. Gunn, Ariella P. Dale, Sean A. Buono, et al. (+32)
435 [GO] Microbiology Spectrum 2021―Oct―27 An Assessment of Serological Assays for SARS-CoV-2 as Surrogates for Authentic Virus Neutralization Nicholas Wohlgemuth, Kendall Whitt, Sean Cherry, Ericka Kirkpatrick Roubidoux, Chun-Yang Lin, Kim J. Allison, et al. (+16)
436 [GO] Journal of Virology 2021―Oct―27 Protective Efficacy of Gastrointestinal SARS-CoV-2 Delivery Against Intranasal and Intratracheal SARS-CoV-2 Challenge in Rhesus Macaques Jingyou Yu, Natalie D. Collins, Noe B. Mercado, Katherine McMahan, Abishek Chandrashekar, Jinyan Liu, et al. (+25)
437 [GO] Microbiology Spectrum 2021―Oct―27 The Emergence of Sars-CoV-2 Variant Lambda (C.37) in South America Pedro E. Romero, Alejandra Dávila-Barclay, Guillermo Salvatierra, Luis González, Diego Cuicapuza, Luis Solís, et al. (+5)
438 [GO] mBio 2021―Oct―26 Identification of ZDHHC17 as a Potential Drug Target for Swine Acute Diarrhea Syndrome Coronavirus Infection Yun Luo, Chee Wah Tan, Shi-Zhe Xie, Ying Chen, Yu-Lin Yao, Kai Zhao, et al. (+7)
439 [GO] mBio 2021―Oct―26 Temporal-Geographical Dispersion of SARS-CoV-2 Spike Glycoprotein Variant Lineages and Their Functional Prediction Using in Silico Approach Siaw Shi Boon, Chichao Xia, Maggie Haitian Wang, Ka Lai Yip, Ho Yin Luk, Sile Li, et al. (+6)
440 [GO] mSystems 2021―Oct―26 Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+28)
441 [GO] mSystems 2021―Oct―26 Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+28)
442 [GO] Microbiology Spectrum 2021―Oct―25 Robust Evaluation of Ultraviolet-C Sensitivity for SARS-CoV-2 and Surrogate Coronaviruses S. J. Boegel, M. Gabriel, M. Sasges, B. Petri, M. R. D’Agostino, A. Zhang, et al. (+5)
443 [GO] Microbiology Spectrum 2021―Oct―25 Diagnostic Efficacy and Tolerability of Molded Plastic Nasopharyngeal Swab (FinSwab) Compared to Flocked Nylon Swab in Detection of SARS-CoV-2 and Other Respiratory Viruses Miia Laine, Jaakko Ahti, Ville Peltola, Piritta Peri, Antti J. Hakanen, Matti Waris, Heba H. Mostafa
444 [GO] Microbiology Spectrum 2021―Oct―25 SARS-CoV-2 Antibody Binding and Neutralization in Dried Blood Spot Eluates and Paired Plasma Hannah L. Itell, Haidyn Weight, Carolyn S. Fish, Jennifer K. Logue, Nicholas Franko, Caitlin R. Wolf, et al. (+6)
445 [GO] Microbiology Spectrum 2021―Oct―25 Generation of False-Positive SARS-CoV-2 Antigen Results with Testing Conditions outside Manufacturer Recommendations: A Scientific Approach to Pandemic Misinformation Glenn Patriquin, Ross J. Davidson, Todd F. Hatchette, Breanne M. Head, Edgard Mejia, Michael G. Becker, et al. (+8)
446 [GO] Microbiology Spectrum 2021―Oct―25 Respiratory Pathogen Coinfections in SARS-CoV-2-Positive Patients in Southeastern Wisconsin: A Retrospective Analysis Samantha J. Scott, Beth Pfotenhauer, Joshua J. Weiner, Jordan Hilleshiem, Manjeet Khubbar, Sanjib Bhattacharyya, S. Wesley Long
447 [GO] Microbiology Resource Announcements 2021―Oct―21 Complete Genome Sequence of Bovine Coronavirus in Blood Diarrhea from Adult Cattle That Died from Winter Dysentery in Japan Keisuke Nakagawa, Hitomi Kumano, Yuko Kitamura, Keisuke Kuwata, Eiji Tanaka, Hideto Fukushi, Jelle Matthijnssens
448 [GO] Microbiology Resource Announcements 2021―Oct―21 Genome Sequences of SARS-CoV-2 Sublineage B.1.617.2 Strains from 12 Children in Chattogram, Bangladesh Adnan Mannan, H. M. Hamidullah Mehedi, M. Abdur Rob, Sanjoy Kanti Biswas, Nahid Sultana, Rajdeep Biswas, et al. (+14)
449 [GO] Journal of Virology 2021―Oct―20 Key substitutions in the spike protein of SARS-CoV-2 variants can predict resistance to monoclonal antibodies, but other substitutions can modify the effects Sabrina Lusvarghi, Wei Wang, Rachel Herrup, Sabari Nath Neerukonda, Russell Vassell, Lisa Bentley, et al. (+3)
450 [GO] Journal of Virology 2021―Oct―20 SARS-CoV-2 causes lung infection without severe disease in human ACE2 knock-in mice Emma S. Winkler, Rita E. Chen, Fahmida Alam, Soner Yildiz, James Brett Case, Melissa B. Uccellini, et al. (+4)
451 [GO] Microbiology Spectrum 2021―Oct―20 COVID-19-Associated Pulmonary Aspergillosis, Fungemia, and Pneumocystosis in the Intensive Care Unit: a Retrospective Multicenter Observational Cohort during the First French Pandemic Wave Stéphane Bretagne, Karine Sitbon, Françoise Botterel, Sarah Dellière, Valérie Letscher-Bru, Taieb Chouaki, et al. (+30)
452 [GO] Microbiology Spectrum 2021―Oct―20 Multisite Clinical Validation of Isothermal Amplification-Based SARS-CoV-2 Detection Assays Using Different Sampling Strategies Kanan T. Desai, Karla Alfaro, Laura Mendoza, Matthew Faron, Brian Mesich, Mauricio Maza, et al. (+16)
453 [GO] Microbiology Spectrum 2021―Oct―20 Risk Factors for Being Seronegative following SARS-CoV-2 Infection in a Large Cohort of Health Care Workers in Denmark Caroline Klint Johannesen, Omid Rezahosseini, Mikkel Gybel-Brask, Jonas Henrik Kristensen, Rasmus Bo Hasselbalch, Mia Marie Pries-Heje, et al. (+26)
454 [GO] mSystems 2021―Oct―19 Assessing Multiplex Tiling PCR Sequencing Approaches for Detecting Genomic Variants of SARS-CoV-2 in Municipal Wastewater Xuan Lin, Melissa Glier, Kevin Kuchinski, Tenysha Ross-Van Mierlo, David McVea, John R. Tyson, et al. (+3)
455 [GO] mBio 2021―Oct―19 Infectious SARS-CoV-2 Is Emitted in Aerosol Particles Seth A. Hawks, Aaron J. Prussin, Sarah C. Kuchinsky, Jin Pan, Linsey C. Marr, Nisha K. Duggal, John A. Lednicky
456 [GO] mBio 2021―Oct―19 Rapid Proliferation of Pandemic Research: Implications for Dual-Use Risks Sriharshita Musunuri, Jonas B. Sandbrink, Joshua Teperowski Monrad, Megan J. Palmer, Gregory D. Koblentz, Paul Keim
457 [GO] Microbiology Spectrum 2021―Oct―13 Oral Microbiome Alterations and SARS-CoV-2 Saliva Viral Load in Patients with COVID-19 Emily Happy Miller, Medini K. Annavajhala, Alexander M. Chong, Heekuk Park, Yael R. Nobel, Ali Soroush, et al. (+9)
458 [GO] Journal of Clinical Microbiology 2021―Oct―13 Aspergillus Lateral Flow Assay with Digital Reader for the Diagnosis of COVID-19 Associated Pulmonary Aspergillosis (CAPA): A multicenter study Brice Autier, Juergen Prattes, P. Lewis White, Maricela Valerio, Marina Machado, Jessica Price, et al. (+3)
459 [GO] mSphere 2021―Oct―13 Early Prediction of Severe COVID-19 in Patients by a Novel Immune-Related Predictive Model Caiyu Sun, Mingshan Xue, Min Yang, Lihui Zhu, Yunxue Zhao, Xiaoting Lv, et al. (+9)
460 [GO] Microbiology Spectrum 2021―Oct―13 Shared Mutations in Emerging SARS-CoV-2 Circulating Variants May Lead to Reverse Transcription-PCR (RT-PCR)-Based Misidentification of B.1.351 and P.1 Variants of Concern Carmen Losada, Carla Rico-Luna, Álvaro Otero-Sobrino, Andrea Molero-Salinas, Sergio Buenestado-Serrano, Ana Candela, et al. (+5)
461 [GO] Microbiology Spectrum 2021―Oct―13 Comparative Performance of a New SARS-CoV-2 Rapid Detection System Gianni Gori Savellini, Gabriele Anichini, Chiara Terrosi, Shibily Prathyumnan, Claudia Gandolfo, Stefano Marini, et al. (+2)
462 [GO] Microbiology Spectrum 2021―Oct―13 Structural Basis of a Human Neutralizing Antibody Specific to the SARS-CoV-2 Spike Protein Receptor-Binding Domain Mei Yang, Jiaqi Li, Zhaoxia Huang, Heng Li, Yueming Wang, Xiaoli Wang, et al. (+22)
463 [GO] Microbiology Spectrum 2021―Oct―13 Routine, Cost-Effective SARS-CoV-2 Surveillance Testing Using Pooled Saliva Limits Viral Spread on a Residential College Campus Nicole A. Vander Schaaf, Anthony J. Fund, Brianna V. Munnich, Alexi L. Zastrow, Erin E. Fund, Tanner L. Senti, et al. (+7)
464 [GO] mBio 2021―Oct―12 A Vimentin-Targeting Oral Compound with Host-Directed Antiviral and Anti-Inflammatory Actions Addresses Multiple Features of COVID-19 and Related Diseases Zhizhen Li, Jianping Wu, Ji Zhou, Baoshi Yuan, Jiqiao Chen, Wanchen Wu, et al. (+14)
465 [GO] mBio 2021―Oct―12 A Low-Producing Haplotype of Interleukin-6 Disrupting CTCF Binding Is Protective against Severe COVID-19 Tao Chen, Yu-Xin Lin, Yan Zha, Ying Sun, Jinxiu Tian, Zhiying Yang, et al. (+19)
466 [GO] mBio 2021―Oct―12 Two-Component Nanoparticle Vaccine Displaying Glycosylated Spike S1 Domain Induces Neutralizing Antibody Response against SARS-CoV-2 Variants Linda van Oosten, Jort J. Altenburg, Cyrielle Fougeroux, Corinne Geertsema, Fred van den End, Wendy A. C. Evers, et al. (+24)
467 [GO] Antimicrobial Agents and Chemotherapy 2021―Oct―11 MOXIDECTIN AND IVERMECTIN INHIBIT SARS-COV-2 REPLICATION IN VERO E6 CELLS BUT NOT IN HUMAN PRIMARY AIRWAY EPITHELIUM CELLS Nilima Dinesh Kumar, Bram M. ter Ellen, Ellen M. Bouma, Berit Troost, Denise P. I. van de Pol, Heidi H. van der Ende-Metselaar, et al. (+8)
468 [GO] Microbiology Spectrum 2021―Oct―07 A Serological Snapshot of COVID-19 Initial Stages in Israel by a 6-Plex Antigen Array Morly Fisher, Haim Levy, Ella Fatelevich, Yafa Afrimov, Amir Ben-Shmuel, Ronit Rosenfeld, et al. (+12)
469 [GO] Microbiology Spectrum 2021―Oct―07 Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of COVID-19 Patients Konstantina Kitsou, Anastasia Kotanidou, Dimitrios Paraskevis, Timokratis Karamitros, Aris Katzourakis, Richard Tedder, et al. (+9)
470 [GO] Microbiology Spectrum 2021―Oct―07 PABPC4 Broadly Inhibits Coronavirus Replication by Degrading Nucleocapsid Protein through Selective Autophagy Yajuan Jiao, Ning Kong, Hua Wang, Dage Sun, Sujie Dong, Xiaoyong Chen, et al. (+13)
471 [GO] Microbiology Resource Announcements 2021―Oct―07 Genome Sequences of Community SARS-CoV-2 B.1.526 and P.1 Variants Circulating in the Dominican Republic Robert Paulino-Ramirez, Victor Virgilio Calderon, Alejandro Vallejo Degaudenzi, Simon Roux
472 [GO] Microbiology Spectrum 2021―Oct―07 Validation of Commercial SARS-CoV-2 Immunoassays in a Nigerian Population Fehintola Ige, Yohhei Hamada, Laura Steinhardt, Nnaemeka C. Iriemenam, Mabel Uwandu, Stacie Marta Greby, et al. (+6)
473 [GO] Microbiology Spectrum 2021―Oct―07 Averting an Outbreak of SARS-CoV-2 in a University Residence Hall through Wastewater Surveillance Ryland Corchis-Scott, Qiudi Geng, Rajesh Seth, Rajan Ray, Mohsan Beg, Nihar Biswas, et al. (+17)
474 [GO] Microbiology Spectrum 2021―Oct―07 Rapid and High-Throughput Reverse Transcriptase Quantitative PCR (RT-qPCR) Assay for Identification and Differentiation between SARS-CoV-2 Variants B.1.1.7 and B.1.351 Oran Erster, Ella Mendelson, Virginia Levy, Areej Kabat, Batya Mannasse, Hadar Asraf, et al. (+11)
475 [GO] Journal of Clinical Microbiology 2021―Oct―06 Comparing Five SARS-CoV-2 Antibody Assay Results Before and After the First and Second ChAdOx1 nCoV-19 Vaccination Among Health Care Workers: A Prospective Multicenter Study Seri Jeong, Nuri Lee, Su Kyung Lee, Eun-Jung Cho, Jungwon Hyun, Min-Jeong Park, et al. (+6)
476 [GO] Journal of Virology 2021―Oct―06 Highly efficient SARS-CoV-2 infection of human cardiomyocytes: spike protein-mediated cell fusion and its inhibition Chanakha K. Navaratnarajah, David R. Pease, Peter Halfmann, Biruhalem Taye, Alison Barkhymer, Kyle G. Howell, et al. (+5)
477 [GO] Applied and Environmental Microbiology 2021―Oct―06 Application of Copper Iodide Nanoparticle-doped Film and Fabric to Inactivate SARS-CoV-2 via the Virucidal Activity of Cuprous Ion (Cu + ) Yohei Takeda, Dulamjav Jamsransuren, Tomokazu Nagao, Yoko Fukui, Sachiko Matsuda, Haruko Ogawa
478 [GO] mBio 2021―Oct―05 A Combination of Receptor-Binding Domain and N-Terminal Domain Neutralizing Antibodies Limits the Generation of SARS-CoV-2 Spike Neutralization-Escape Mutants Denise Haslwanter, M. Eugenia Dieterle, Anna Z. Wec, Cecilia M. O’Brien, Mrunal Sakharkar, Catalina Florez, et al. (+25)
479 [GO] mBio 2021―Oct―05 Neutralization of SARS-CoV-2 Variants of Concern Harboring Q677H Cong Zeng, John P. Evans, Julia N. Faraone, Panke Qu, Yi-Min Zheng, Linda Saif, et al. (+5)
480 [GO] Microbiology Spectrum 2021―Sep―30 Kinetics of SARS-CoV-2 Specific and Neutralizing Antibodies over Seven Months after Symptom Onset in COVID-19 Patients Liguo Zhu, Xin Xu, Baoli Zhu, Xiling Guo, Ke Xu, Ci Song, et al. (+13)
481 [GO] Journal of Virology 2021―Sep―29 Genetic and Antigenic Characterization of an Influenza A(H3N2) Outbreak in Cambodia and the Greater Mekong Subregion during the COVID-19 Pandemic, 2020 Jurre Y. Siegers, Vijaykrishna Dhanasekaran, Ruopeng Xie, Yi-Mo Deng, Sarika Patel, Vanra Ieng, et al. (+14)
482 [GO] Journal of Virology 2021―Sep―29 Structure-based discovery and structural basis of a novel broad-spectrum natural product against main protease of coronavirus Yuting Zhang, Hongxia Gao, Xiaohui Hu, Qisheng Wang, Fanglin Zhong, Xuelan Zhou, et al. (+26)
483 [GO] Microbiology Spectrum 2021―Sep―29 Rapid and Quantitative Detection of Human Antibodies against the 2019 Novel Coronavirus SARS CoV2 and Its Variants as a Result of Vaccination and Infection Benjamin Taubner, Ruben Peredo-Wende, Ananthakrishnan Ramani, Gurpreet Singh, Klemen Strle, Nathaniel C. Cady, Tulip Jhaveri
484 [GO] Microbiology Spectrum 2021―Sep―29 Serological Assays for Assessing Postvaccination SARS-CoV-2 Antibody Response Sally A. Mahmoud, Subhashini Ganesan, Shivaraj Naik, Safaa Bissar, Isra Al Zamel, KN Warren, et al. (+3)
485 [GO] Microbiology Spectrum 2021―Sep―29 SARS-CoV-2 Antibody Testing in Health Care Workers: A Comparison of the Clinical Performance of Three Commercially Available Antibody Assays Niamh Allen, Melissa Brady, Antonio Isidro Carrion Martin, Lisa Domegan, Cathal Walsh, Elaine Houlihan, et al. (+22)
486 [GO] Journal of Clinical Microbiology 2021―Sep―29 Performance evaluation of the BD SARS-CoV-2 reagents for the BD MAX™ system Karen Yanson, William Laviers, Lori Neely, Elizabeth Lockamy, Luis Carlos Castillo-Hernandez, Christopher Oldfied, et al. (+8)
487 [GO] Journal of Clinical Microbiology 2021―Sep―29 SARS-CoV-2 supply shortages and TB diagnostics: Current issues requiring immediate solutions Derek T. Armstrong, Erin A. Tacheny, Gene Olinger, Ryan Howard, M. Megan Lemmon, Debanjana Dasgupta, et al. (+2)
488 [GO] mBio 2021―Sep―28 Mechanism of Microbial Metabolite Leupeptin in the Treatment of COVID-19 by Traditional Chinese Medicine Herbs Lifeng Fu, Shuai Shao, Yong Feng, Fei Ye, Xue Sun, Qingling Wang, et al. (+10)
489 [GO] mBio 2021―Sep―28 Antibody-Dependent Enhancement of SARS-CoV-2 Infection Is Mediated by the IgG Receptors FcγRIIA and FcγRIIIA but Does Not Contribute to Aberrant Cytokine Production by Macrophages Tadashi Maemura, Makoto Kuroda, Tammy Armbrust, Seiya Yamayoshi, Peter J. Halfmann, Yoshihiro Kawaoka, Stacey Schultz-Cherry
490 [GO] mBio 2021―Sep―28 Betacoronavirus Assembly: Clues and Perspectives for Elucidating SARS-CoV-2 Particle Formation and Egress David Bracquemond, Delphine Muriaux, Francois-Loic Cosset, Vinayaka R. Prasad
491 [GO] mBio 2021―Sep―28 Microbial Ecology and Evolution Are Essential for Understanding Pandemics Megan E. Frederickson, Aspen T. Reese
492 [GO] Microbiology Resource Announcements 2021―Sep―23 Whole-Genome Sequences of SARS-CoV-2 Isolates from Ethiopian Patients Dawit Hailu Alemayehu, Bethlehem Adnew, Fekadu Alemu, Dessalegn Abeje Tefera, Tamrayehu Seyoum, Getachew Tesfaye Beyene, et al. (+8)
493 [GO] Microbiology Spectrum 2021―Sep―22 Serological Testing Reveals the Hidden COVID-19 Burden among Health Care Workers Experiencing a SARS-CoV-2 Nosocomial Outbreak Yu Nakagama, Yuko Komase, Katherine Candray, Sachie Nakagama, Fumiaki Sano, Tomoya Tsuchida, et al. (+7)
494 [GO] Journal of Virology 2021―Sep―22 Discovery and evaluation of entry inhibitors for SARS-CoV-2 and its emerging variants Arpan Acharya, Kabita Pandey, Michellie Thurman, Elizabeth Klug, Jay Trivedi, Kalicharan Sharma, et al. (+3)
495 [GO] Microbiology Spectrum 2021―Sep―22 Comparison of Dried Blood Spots and Venous Blood for the Detection of SARS-CoV-2 Antibodies in a Population of Nursing Home Residents Eline Meyers, Stefan Heytens, Asangwing Formukong, Hanne Vercruysse, An De Sutter, Tom Geens, et al. (+7)
496 [GO] Microbiology Spectrum 2021―Sep―22 SARS-CoV-2 Antibody Rapid Tests: Valuable Epidemiological Tools in Challenging Settings Francesca Saluzzo, Paola Mantegani, Valeria Poletti De Chaurand, Virginia Quaresima, Federica Cugnata, Clelia Di Serio, et al. (+5)
497 [GO] Journal of Clinical Microbiology 2021―Sep―22 Finding the middle ground with the clinical laboratory’s role in SARS-CoV-2 genomic surveillance Erin H. Graf
498 [GO] Journal of Virology 2021―Sep―22 Direct activation of endothelial cells by SARS-CoV-2 nucleocapsid protein is blocked by Simvastatin Yisong Qian, Tianhua Lei, Parth S. Patel, Chi H Lee, Paula Monaghan-Nichols, Hong-Bo Xin, et al. (+2)
499 [GO] Journal of Virology 2021―Sep―22 Inhibition of autophagy suppresses SARS-CoV-2 replication and ameliorates pneumonia in hACE2 transgenic mice and xenografted human lung tissues Chao Shang, Xinyu Zhuang, He Zhang, Yiquan Li, Yilong Zhu, Jing Lu, et al. (+7)
500 [GO] Applied and Environmental Microbiology 2021―Sep―22 RNA viromics of Southern California wastewater and detection of SARS-CoV-2 single nucleotide variants. Jason A. Rothman, Theresa B. Loveless, Joseph Kapcia, Eric D. Adams, Joshua A. Steele, Amity G. Zimmer-Faust, et al. (+7)
501 [GO] Journal of Virology 2021―Sep―22 Serum Neutralizing Activity of mRNA-1273 Against SARS-CoV-2 Variants Angela Choi, Matthew Koch, Kai Wu, Groves Dixon, Judy Oestreicher, Holly Legault, et al. (+6)
502 [GO] Journal of Clinical Microbiology 2021―Sep―22 Whole Genome Sequencing of SARS-CoV-2: Assessment of the Ion Torrent AmpliSeq Panel and Comparison with the Illumina-MiSeq ARTIC Protocol Jonathan Plitnick, Sara Griesemer, Erica Lasek-Nesselquist, Navjot Singh, Daryl Lamson, Kirsten St. George
503 [GO] mBio 2021―Sep―21 SARS-CoV-2 Nsp5 Demonstrates Two Distinct Mechanisms Targeting RIG-I and MAVS To Evade the Innate Immune Response Yongzhen Liu, Chao Qin, Youliang Rao, Chau Ngo, Joshua J. Feng, Jun Zhao, et al. (+14)
504 [GO] mBio 2021―Sep―21 Safety and Immunogenicity of a Newcastle Disease Virus Vector-Based SARS-CoV-2 Vaccine Candidate, AVX/COVID-12-HEXAPRO (Patria), in Pigs Jesús Horacio Lara-Puente, Juan Manuel Carreño, Weina Sun, Alejandro Suárez-Martínez, Luis Ramírez-Martínez, Francisco Quezada-Monroy, et al. (+14)
505 [GO] Antimicrobial Agents and Chemotherapy 2021―Sep―20 The natural stilbenoid (-)-hopeaphenol inhibits cellular entry of SARS-CoV-2 USA-WA1/2020, B.1.1.7 and B.1.351 variants Ian Tietjen, Joel Cassel, Emery T. Register, Xiang Yang Zhou, Troy E. Messick, Frederick Keeney, et al. (+8)
506 [GO] Microbiology Resource Announcements 2021―Sep―16 Draft Genome Sequence of a Multidrug-Resistant Escherichia coli Sequence Type 1193 Pandemic Clone Isolated from Wastewater in Austria Adriana Cabal, Nadine Peischl, Gerhard Rab, Anna Stöger, Burkhard Springer, Jasmin Sucher, et al. (+3)
507 [GO] Journal of Clinical Microbiology 2021―Sep―15 Evaluation of the BinaxNOW COVID-19 rapid antigen test in an asymptomatic patient population undergoing pre-procedural screening Nadarra L. Stokes, Katelyn A. Reed, Elie F. Berbari, Sara Vetter, Matthew J. Binnicker
508 [GO] Journal of Virology 2021―Sep―15 Protective efficacy of rhesus adenovirus COVID-19 vaccines against mouse-adapted SARS-CoV-2 Lisa H. Tostanoski, Lisa E. Gralinski, David R. Martinez, Alexandra Schaefer, Shant H. Mahrokhian, Zhenfeng Li, et al. (+11)
509 [GO] Microbiology Spectrum 2021―Sep―15 Saliva SARS-CoV-2 Antibody Prevalence in Children Maya W. Keuning, Marloes Grobben, Anne-Elise C. de Groen, Eveline P. Berman-de Jong, Merijn W. Bijlsma, Sophie Cohen, et al. (+18)
510 [GO] Microbiology Spectrum 2021―Sep―15 A Multiplex Noninvasive Salivary Antibody Assay for SARS-CoV-2 Infection and Its Application in a Population-Based Survey by Mail Andrey I. Egorov, Shannon M. Griffin, Miyu Fuzawa, Jason Kobylanski, Rachel Grindstaff, William Padgett, et al. (+8)
511 [GO] Microbiology Spectrum 2021―Sep―15 Lower Incidence of Parvovirus-B19 Infections in Dutch Blood Donors during SARS-CoV-2 Pandemic M. W. Molenaar-de Backer, B. M. Hogema, M. H. Koppelman, T. J. van de Laar, E. Slot, H. L. Zaaijer, Rosemary C. She
512 [GO] Journal of Virology 2021―Sep―15 The NF-κB transcriptional footprint is essential for SARS-CoV-2 replication Benjamin E. Nilsson-Payant, Skyler Uhl, Adrien Grimont, Ashley S. Doane, Phillip Cohen, Roosheel S. Patel, et al. (+12)
513 [GO] Journal of Clinical Microbiology 2021―Sep―15 Development of a nanobody-based competitive ELISA for efficiently and specifically detecting antibodies against genotype 2 porcine reproductive and respiratory syndrome viruses Hong Duan, Xu Chen, Jiakai Zhao, Jiahong Zhu, Guixi Zhang, Mengnan Fan, et al. (+6)
514 [GO] mSystems 2021―Sep―14 High-Frequency, High-Throughput Quantification of SARS-CoV-2 RNA in Wastewater Settled Solids at Eight Publicly Owned Treatment Works in Northern California Shows Strong Association with COVID-19 Incidence Marlene K. Wolfe, Aaron Topol, Alisha Knudson, Adrian Simpson, Bradley White, Duc J. Vugia, et al. (+8)
515 [GO] mBio 2021―Sep―14 MOV10 Helicase Interacts with Coronavirus Nucleocapsid Protein and Has Antiviral Activity Li Wang, Isabel Sola, Luis Enjuanes, Sonia Zuñiga, Adam P. Geballe, Samuel I. Miller
516 [GO] mBio 2021―Sep―14 Neutralizing Monoclonal Antibodies That Target the Spike Receptor Binding Domain Confer Fc Receptor-Independent Protection against SARS-CoV-2 Infection in Syrian Hamsters Wen Su, Sin Fun Sia, Aaron J. Schmitz, Traci L. Bricker, Tyler N. Starr, Allison J. Greaney, et al. (+16)
517 [GO] Journal of Clinical Microbiology 2021―Sep―08 Aspergillus test profiles and mortality in critically-ill COVID-19 patients Mehmet Ergün, Roger J.M. Brüggemann, Alexandre Alanio, Sarah Dellière, Andreas van Arkel, Robbert G. Bentvelsen, et al. (+15)
518 [GO] Microbiology Spectrum 2021―Sep―08 The Reemergence of Seasonal Respiratory Viruses in Houston, Texas, after Relaxing COVID-19 Restrictions Parsa Hodjat, Paul A. Christensen, Sishir Subedi, David W. Bernard, Randall J. Olsen, S. Wesley Long, Heba H. Mostafa
519 [GO] Applied and Environmental Microbiology 2021―Sep―08 UV Inactivation of SARS-CoV-2 across the UVC spectrum: KrCl* excimer, mercury-vapor, and LED sources Ben Ma, Patricia M. Gundy, Charles P. Gerba, Mark D. Sobsey, Karl G. Linden
520 [GO] Microbiology Spectrum 2021―Sep―08 Evaluation of a SARS-CoV-2 Capture IgM Antibody Assay in Convalescent Sera Binh Ha, Samadhan Jadhao, Laila Hussaini, Theda Gibson, Kathy Stephens, Luis Salazar, et al. (+9)
521 [GO] mSphere 2021―Sep―08 Erratum for Markmann et al., “Sex Disparities and Neutralizing-Antibody Durability to SARS-CoV-2 Infection in Convalescent Individuals” Alena J. Markmann, Natasa Giallourou, D. Ryan Bhowmik, Yixuan J. Hou, Aaron Lerner, David R. Martinez, et al. (+18)
522 [GO] Microbiology Spectrum 2021―Sep―08 Analysis of the Role of N-Linked Glycosylation in Cell Surface Expression, Function, and Binding Properties of SARS-CoV-2 Receptor ACE2 Raymond Rowland, Alberto Brandariz-Nuñez, Ujjwal Neogi
523 [GO] mSphere 2021―Sep―08 Complete Analysis of the Epidemiological Scenario around a SARS-CoV-2 Reinfection: Previous Infection Events and Subsequent Transmission Laura Pérez Lago, Leire Pérez Latorre, Marta Herranz, Francisco Tejerina, Pedro J. Sola-Campoy, Jon Sicilia, et al. (+12)
524 [GO] Journal of Virology 2021―Sep―08 Cytoplasmic tail truncation of SARS-CoV-2 Spike protein enhances titer of pseudotyped vectors but masks the effect of the D614G mutation Hsu-Yu Chen, Chun Huang, Lu Tian, Xiaoli Huang, Chennan Zhang, George N. Llewellyn, et al. (+5)
525 [GO] Journal of Clinical Microbiology 2021―Sep―08 Emergence of SARS-CoV-2 variant B.1.575.2 containing the E484K mutation in the spike protein in Pamplona (Spain) May-June 2021 Camino Trobajo-Sanmartín, Ana Miqueleiz, María Eugenia Portillo, Miguel Fernández-Huerta, Ana Navascués, Pilar Sola Sara, et al. (+4)
526 [GO] Journal of Virology 2021―Sep―08 A bifluorescent-based assay for the identification of neutralizing antibodies against SARS-CoV-2 variants of concern in vitro and in vivo Kevin Chiem, Desarey Morales Vasquez, Jesus A. Silvas, Jun-Gyu Park, Michael S. Piepenbrink, Julien Sourimant, et al. (+9)
527 [GO] mBio 2021―Sep―07 Immunological Profiling of COVID-19 Patients with Pulmonary Sequelae Jianghua Wu, Lu Tang, Yanling Ma, Yu Li, Dongmei Zhang, Qian Li, et al. (+4)
528 [GO] Antimicrobial Agents and Chemotherapy 2021―Sep―07 Antibiotic Use and Bacterial Infection Among Inpatients in the First Wave of COVID-19: A Retrospective Cohort Study of 64,691 Patients Jonathan D. Baghdadi, KC Coffey, Timileyin Adediran, Katherine E. Goodman, Lisa Pineles, Larry S. Magder, et al. (+5)
529 [GO] mBio 2021―Sep―07 Differential Effects of Prostaglandin D 2 Signaling on Macrophages and Microglia in Murine Coronavirus Encephalomyelitis Abhishek Kumar Verma, Jian Zheng, Matthias Mack, Florent Ginhoux, Stanley Perlman, Diane E. Griffin
530 [GO] Antimicrobial Agents and Chemotherapy 2021―Sep―07 Safety, tolerability, pharmacokinetics and immunogenicity of a monoclonal antibody (SCTA01) targeting SARS-CoV-2 in healthy adults: A randomized, double-blind, placebo-controlled, phase I study Yinjuan Li, Lu Qi, Haihong Bai, Chunyun Sun, Shuping Xu, Yu Wang, et al. (+14)
531 [GO] Microbiology Resource Announcements 2021―Sep―02 Coding-Complete Sequence of a SARS-CoV-2 B.1.1.25 Lineage Obtained from an 8-Day-Old Deceased Neonate Muntasir Alam, M. Ishrat Jahan, Shafina Jahan, Dianna M. Blau, Afruna Rahman, Mohammed Ziaur Rahman, et al. (+5)
532 [GO] Microbiology Spectrum 2021―Sep―01 Distinct Metabolic Profile Associated with a Fatal Outcome in COVID-19 Patients during the Early Epidemic in Italy Elisa Saccon, Alessandra Bandera, Mariarita Sciumè, Flora Mikaeloff, Abid A. Lashari, Stefano Aliberti, et al. (+18)
533 [GO] Journal of Clinical Microbiology 2021―Sep―01 Routine antigen testing is not a substitute for healthcare worker vaccination against SARS-CoV-2 Mary Elizabeth Sexton, Colleen S. Kraft
534 [GO] Microbiology Spectrum 2021―Sep―01 Targeted Hybridization Capture of SARS-CoV-2 and Metagenomics Enables Genetic Variant Discovery and Nasal Microbiome Insights Dorottya Nagy-Szakal, Mara Couto-Rodriguez, Heather L. Wells, Joseph E. Barrows, Marilyne Debieu, Kristin Butcher, et al. (+9)
535 [GO] Journal of Clinical Microbiology 2021―Sep―01 A hemagglutination-based, semi-quantitative test for point-of-care determination of SARS-CoV-2 antibody levels Robert L. Kruse, Yuting Huang, Alyssa Lee, Xianming Zhu, Ruchee Shrestha, Oliver Laeyendecker, et al. (+5)
536 [GO] Microbiology Spectrum 2021―Sep―01 Mild SARS-CoV-2 Illness Is Not Associated with Reinfections and Provides Persistent Spike, Nucleocapsid, and Virus-Neutralizing Antibodies Charles F. Schuler, Carmen Gherasim, Kelly O’Shea, David M. Manthei, Jesse Chen, Cristyn Zettel, et al. (+8)
537 [GO] mBio 2021―Aug―31 Evolution, Mode of Transmission, and Mutational Landscape of Newly Emerging SARS-CoV-2 Variants Chiranjib Chakraborty, Ashish Ranjan Sharma, Manojit Bhattacharya, Govindasamy Agoramoorthy, Sang-Soo Lee, Stephen P. Goff
538 [GO] Journal of Virology 2021―Aug―25 A novel potentially recombinant rodent coronavirus with a polybasic cleavage site in the spike protein Xin Li, Liang Wang, Peipei Liu, Hongying Li, Shuting Huo, Kexin Zong, et al. (+10)
539 [GO] mSphere 2021―Aug―25 Emergence of Multiple SARS-CoV-2 Antibody Escape Variants in an Immunocompromised Host Undergoing Convalescent Plasma Treatment Liang Chen, Michael C. Zody, Clara Di Germanio, Rachel Martinelli, Jose R. Mediavilla, Marcus H. Cunningham, et al. (+18)
540 [GO] mSphere 2021―Aug―25 Sex Disparities and Neutralizing-Antibody Durability to SARS-CoV-2 Infection in Convalescent Individuals Alena J. Markmann, Natasa Giallourou, D. Ryan Bhowmik, Yixuan J. Hou, Aaron Lerner, David R. Martinez, et al. (+19)
541 [GO] Microbiology Spectrum 2021―Aug―25 Detection of SARS-CoV-2 Infection in Gargle, Spit, and Sputum Specimens Eero Poukka, Henna Mäkelä, Lotta Hagberg, Thuan Vo, Hanna Nohynek, Niina Ikonen, et al. (+5)
542 [GO] Microbiology Spectrum 2021―Aug―25 Comparison of SARS-CoV-2 PCR-Based Detection Using Saliva or Nasopharyngeal Swab Specimens in Asymptomatic Populations Guang Fan, Xuan Qin, Daniel N. Streblow, Cristina Magallanes Hoyos, Donna E. Hansel, William Lainhart
543 [GO] Journal of Clinical Microbiology 2021―Aug―25 Single-amplicon, multiplex real-time RT-PCR with tiled probes to detect SARS-CoV-2 spike mutations associated with variants of concern Ahmed Babiker, Katherine Immergluck, Samuel D. Stampfer, Anuradha Rao, Leda Bassit, Max Su, et al. (+13)
544 [GO] Microbiology Spectrum 2021―Aug―25 Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing Susan Realegeno, Sara Hash, Charlene Wong, Roland Liu, Jovan Shepherd, Robert T. Schooley, et al. (+5)
545 [GO] Microbiology Spectrum 2021―Aug―25 Identification of Novel Mutations in the N Gene of SARS-CoV-2 That Adversely Affect the Detection of the Virus by Reverse Transcription-Quantitative PCR Rashedul Hasan, Mohammad Enayet Hossain, Mojnu Miah, Md Mahmudul Hasan, Mustafizur Rahman, Mohammed Ziaur Rahman, S. Wesley Long
546 [GO] mBio 2021―Aug―24 SARS-CoV-2 Bearing a Mutation at the S1/S2 Cleavage Site Exhibits Attenuated Virulence and Confers Protective Immunity Michihito Sasaki, Shinsuke Toba, Yukari Itakura, Herman M. Chambaro, Mai Kishimoto, Koshiro Tabata, et al. (+9)
547 [GO] Microbiology Resource Announcements 2021―Aug―19 Phylogenetically Distinct Near-Complete Genome Sequences of Porcine Reproductive and Respiratory Syndrome Virus Type 2 Variants from Four Distinct Disease Outbreaks at U.S. Swine Farms over the Past 6 Years Declan C. Schroeder, Nkechi M. Odogwu, Jessica Kevill, My Yang, Venkatramana D. Krishna, Mariana Kikuti, et al. (+16)
548 [GO] Journal of Clinical Microbiology 2021―Aug―18 Closing the Brief Case: Ventilator-Associated Corynebacterium accolens Pneumonia in a Patient with Respiratory Failure Due to COVID-19 Benjamin M. Liu, Emily M. Beck, Mark A. Fisher, Carey-Ann D. Burnham
549 [GO] Journal of Clinical Microbiology 2021―Aug―18 The Brief Case: Ventilator-Associated Corynebacterium accolens Pneumonia in a Patient with Respiratory Failure Due to COVID-19 Benjamin M. Liu, Emily M. Beck, Mark A. Fisher, Carey-Ann D. Burnham
550 [GO] Microbiology Spectrum 2021―Aug―18 Pre-Vaccine Positivity of SARS-CoV-2 Antibodies in Alberta, Canada during the First Two Waves of the COVID-19 Pandemic Carmen L. Charlton, Leonard T. Nguyen, Ashley Bailey, Jayne Fenton, Sabrina S. Plitt, Carol Marohn, et al. (+10)
551 [GO] Microbiology Spectrum 2021―Aug―18 Comprehensive Characterization of COVID-19 Patients with Repeatedly Positive SARS-CoV-2 Tests Using a Large U.S. Electronic Health Record Database Xiao Dong, Yujia Zhou, Xiao-ou Shu, Elmer V. Bernstam, Rebecca Stern, David M. Aronoff, et al. (+3)
552 [GO] Journal of Clinical Microbiology 2021―Aug―18 Cooperation Under Pressure: Lessons from the COVID-19 Swab Crisis Ramy Arnaout
553 [GO] Journal of Virology 2021―Aug―18 Establishment of Full-length cDNA Clones and an Efficient Oral Infection Model for Feline Coronavirus in Cats Gang Wang, Guangli Hu, Rui Liang, Jiale Shi, Xiuxiu Qiu, Yiling Yang, et al. (+7)
554 [GO] Microbiology Spectrum 2021―Aug―18 Saliva is Comparable to Nasopharyngeal Swabs for Molecular Detection of SARS-CoV-2 Cody Callahan, Sarah Ditelberg, Sanjucta Dutta, Nancy Littlehale, Annie Cheng, Kristin Kupczewski, et al. (+5)
555 [GO] Journal of Virology 2021―Aug―18 Synergistic block of SARS-CoV-2 infection by combined drug inhibition of the host entry factors PIKfyve kinase and TMPRSS2 protease Alex J.B. Kreutzberger, Anwesha Sanyal, Ravi Ojha, Jesse D. Pyle, Olli Vapalahti, Giuseppe Balistreri, Tom Kirchhausen
556 [GO] Microbiology Spectrum 2021―Aug―18 Erratum for Zhao et al., “Structural Basis and Function of the N Terminus of SARS-CoV-2 Nonstructural Protein 1” Kaitao Zhao, Zunhui Ke, Hongbing Hu, Yahui Liu, Aixin Li, Rong Hua, et al. (+9)
557 [GO] Journal of Virology 2021―Aug―18 Natural isolate and recombinant SARS-CoV-2 rapidly evolve in vitro to higher infectivity through more efficient binding to heparan sulfate and reduced S1/S2 cleavage. Nikita Shiliaev, Tetyana Lukash, Oksana Palchevska, David K. Crossman, Todd J. Green, Michael R. Crowley, et al. (+2)
558 [GO] Journal of Clinical Microbiology 2021―Aug―18 SARS-CoV-2 Serologic Assays Dependent on Dual-Antigen Binding Demonstrate Diverging Kinetics Relative to Other Antibody Detection Methods Elitza S. Theel, Patrick W. Johnson, Katie L. Kunze, Liang Wu, Amy P. Gorsh, Dane Granger, et al. (+14)
559 [GO] Journal of Virology 2021―Aug―18 Deletion of A137R gene from the pandemic strain of African swine fever virus is attenuated and offers protection against virulent pandemic virus Douglas P. Gladue, Elizabeth Ramirez-Medina, Elizabeth Vuono, Ediane Silva, Ayushi Rai, Sarah Pruitt, et al. (+3)
560 [GO] mBio 2021―Aug―17 Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome Carter Merenstein, Guanxiang Liang, Samantha A. Whiteside, Ana G. Cobián-Güemes, Madeline S. Merlino, Louis J. Taylor, et al. (+16)
561 [GO] mBio 2021―Aug―17 Oral Bacteria Combined with an Intranasal Vaccine Protect from Influenza A Virus and SARS-CoV-2 Infection Minami Nagai, Miyu Moriyama, Takeshi Ichinohe, Diane E. Griffin
562 [GO] mBio 2021―Aug―17 Regulation of the Dimerization and Activity of SARS-CoV-2 Main Protease through Reversible Glutathionylation of Cysteine 300 David A. Davis, Haydar Bulut, Prabha Shrestha, Amulya Yaparla, Hannah K. Jaeger, Shin-ichiro Hattori, et al. (+5)
563 [GO] Microbiology Spectrum 2021―Aug―11 Performance Evaluation of the MatMaCorp COVID-19 2SF Assay for the Detection of SARS-CoV-2 from Nasopharyngeal Swabs Arryn Craney, Dustin Petrik, Ashley Suhku, Yuqing Qiu, Sabrina Racine-Brzostek, Hanna Rennert, et al. (+6)
564 [GO] Microbiology Spectrum 2021―Aug―11 TMPRSS2 and RNA-Dependent RNA Polymerase Are Effective Targets of Therapeutic Intervention for Treatment of COVID-19 Caused by SARS-CoV-2 Variants (B.1.1.7 and B.1.351) Jihye Lee, JinAh Lee, Hyeon Ju Kim, Meehyun Ko, Youngmee Jee, Seungtaek Kim, Cyprian C. Rossetto
565 [GO] Microbiology Spectrum 2021―Aug―11 Precision Response to the Rise of the SARS-CoV-2 B.1.1.7 Variant of Concern by Combining Novel PCR Assays and Genome Sequencing for Rapid Variant Detection and Surveillance Nathan Zelyas, Kanti Pabbaraju, Matthew A. Croxen, Tarah Lynch, Emily Buss, Stephanie A. Murphy, et al. (+5)
566 [GO] Journal of Clinical Microbiology 2021―Aug―11 Sars-CoV-2 Genome Sequencing Methods Differ In Their Ability To Detect Variants From Low Viral Load Samples C. Lam, K. Gray, M. Gall, R. Sadsad, A. Arnott, J. Johnson-Mackinnon, et al. (+6)
567 [GO] Journal of Virology 2021―Aug―11 A methyltransferase-defective VSV-based SARS-CoV-2 vaccine candidate provides complete protection against SARS-CoV-2 infection in hamsters Mijia Lu, Yuexiu Zhang, Piyush Dravid, Anzhong Li, Cong Zeng, Mahesh K. C., et al. (+16)
568 [GO] Microbiology Spectrum 2021―Aug―11 Mild and Severe SARS-CoV-2 Infection Induces Respiratory and Intestinal Microbiome Changes in the K18-hACE2 Transgenic Mouse Model Brittany Seibert, C. Joaquín Cáceres, Stivalis Cardenas-Garcia, Silvia Carnaccini, Ginger Geiger, Daniela S. Rajao, et al. (+3)
569 [GO] Microbiology Spectrum 2021―Aug―11 SARS-CoV-2 Isolates Show Impaired Replication in Human Immune Cells but Differential Ability to Replicate and Induce Innate Immunity in Lung Epithelial Cells Miao Jiang, Pekka Kolehmainen, Laura Kakkola, Sari Maljanen, Krister Melén, Teemu Smura, et al. (+3)
570 [GO] mSphere 2021―Aug―11 Human Basigin (CD147) Does Not Directly Interact with SARS-CoV-2 Spike Glycoprotein Robert J. Ragotte, David Pulido, Francesca R. Donnellan, Michelle L. Hill, Giacomo Gorini, Hannah Davies, et al. (+9)
571 [GO] Microbiology Spectrum 2021―Aug―11 Understanding the Barriers to Pooled SARS-CoV-2 Testing in the United States Eli P. Fenichel, R. Tobias Koch, Anna Gilbert, Gregg Gonsalves, Anne L. Wyllie, Rosemary C. She
572 [GO] Journal of Clinical Microbiology 2021―Aug―11 Acquisition of the L452R mutation in the ACE2-binding interface of Spike protein triggers recent massive expansion of SARS-CoV-2 variants Veronika Tchesnokova, Hemantha Kulasekara, Lydia Larson, Victoria Bowers, Elena Rechkina, Dagmara Kisiela, et al. (+11)
573 [GO] Journal of Clinical Microbiology 2021―Aug―11 The fall in antibody response to SARS-CoV-2: a longitudinal study of asymptomatic to critically ill patients up to 10 months after recovery Maddalena Peghin, Maria De Martino, Martina Fabris, Alvisa Palese, Erica Visintini, Elena Graziano, et al. (+11)
574 [GO] Journal of Virology 2021―Aug―11 Porcine reproductive and respiratory syndrome virus infection upregulates negative immune regulators and T-cell exhaustion markers Jayeshbhai Chaudhari, Chia-Sin Liew, Jean-Jack M. Riethoven, Sarah Sillman, Hiep L. X. Vu
575 [GO] mSystems 2021―Aug―10 Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus Smruthi Karthikeyan, Andrew Nguyen, Daniel McDonald, Yijian Zong, Nancy Ronquillo, Junting Ren, et al. (+11)
576 [GO] mBio 2021―Aug―10 Specificity and Mechanism of Coronavirus, Rotavirus, and Mammalian Two-Histidine Phosphoesterases That Antagonize Antiviral Innate Immunity Abhishek Asthana, Christina Gaughan, Beihua Dong, Susan R. Weiss, Robert H. Silverman, Nancy C. Reich
577 [GO] mBio 2021―Aug―10 Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury Amy C. Sims, Hugh D. Mitchell, Lisa E. Gralinski, Jennifer E. Kyle, Kristin E. Burnum-Johnson, Mariam Lam, et al. (+9)
578 [GO] Microbiology Resource Announcements 2021―Aug―05 Whole-Genome Sequences of SARS-CoV-2 Lineage B.1.525 Strains (Variant η) Detected from Patients in the Abruzzo Region (Central Italy) during Spring 2021 Emiliano Delli Compagni, Iolanda Mangone, Barbara Bonfini, Annapia Di Gennaro, Liana Teodori, Alessandra Leone, et al. (+10)
579 [GO] Microbiology Resource Announcements 2021―Aug―05 Near-Complete Genome Sequences of Nine SARS-CoV-2 Strains Harboring the D614G Mutation in Malaysia Ummu Afeera Zainulabid, Norhidayah Kamarudin, Ahmad Hafiz Zulkifly, Han Ming Gan, Darren Dean Tay, Shing Wei Siew, et al. (+7)
580 [GO] Microbiology Spectrum 2021―Aug―04 COVID-19 Cases from the First Local Outbreak of the SARS-CoV-2 B.1.1.7 Variant in China May Present More Serious Clinical Features: A Prospective, Comparative Cohort Study Yang Song, Ziruo Ge, Shuping Cui, Di Tian, Gang Wan, Shuangli Zhu, et al. (+14)
581 [GO] Journal of Clinical Microbiology 2021―Aug―04 Elevated Rates of Indeterminate Results on QuantiFERON®-TB Gold Plus in COVID-19 Patients Kileen L. Shier
582 [GO] Microbiology Spectrum 2021―Aug―04 Evaluation of the INDICAID COVID-19 Rapid Antigen Test in Symptomatic Populations and Asymptomatic Community Testing Ricky Y. T. Chiu, Noah Kojima, Garrett L. Mosley, Kwok Kin Cheng, David Y. Pereira, Matthew Brobeck, et al. (+22)
583 [GO] Microbiology Spectrum 2021―Aug―04 Differential Antibody Response to mRNA COVID-19 Vaccines in Healthy Subjects Sarah E. Wheeler, Galina V. Shurin, Mary Yost, Adam Anderson, Lisa Pinto, Alan Wells, et al. (+2)
584 [GO] Journal of Clinical Microbiology 2021―Aug―04 Can Testing Predict SARS-CoV-2 Infectivity? The Potential for Certain Methods to be a Surrogate for Replication-Competent Virus Matthew J. Binnicker
585 [GO] mSphere 2021―Aug―04 Overlapping of Independent SARS-CoV-2 Nosocomial Transmissions in a Complex Outbreak Laura Pérez-Lago, Helena Martínez-Lozano, Jose Antonio Pajares-Díaz, Arantxa Díaz-Gómez, Marina Machado, Pedro J. Sola-Campoy, et al. (+17)
586 [GO] Microbiology Spectrum 2021―Aug―04 Transformations, Lineage Comparisons, and Analysis of Down-to-Up Protomer States of Variants of the SARS-CoV-2 Prefusion Spike Protein, Including the UK Variant B.1.1.7 Michael H. Peters, Oscar Bastidas, Daniel S. Kokron, Christopher E. Henze, Soo Chan Lee
587 [GO] Microbiology Spectrum 2021―Aug―04 SARS-CoV-2 Quasispecies Provides an Advantage Mutation Pool for the Epidemic Variants Fengming Sun, Xiuhua Wang, Shun Tan, Yunjie Dan, Yanqiu Lu, Juan Zhang, et al. (+11)
588 [GO] Journal of Clinical Microbiology 2021―Aug―04 A Real-World Comparison of SARS-CoV-2 Rapid Antigen vs. Polymerase Chain Reaction Testing in Florida Lao-Tzu Allan-Blitz, Jeffrey D. Klausner
589 [GO] mSphere 2021―Aug―04 Progression of SARS-CoV-2 Seroprevalence in St. Louis, Missouri, through January 2021 Brittany K. Smith, Andrew B. Janowski, Arim C. Fremont, Lucas J. Adams, Ya-Nan Dai, Christopher W. Farnsworth, et al. (+5)
590 [GO] mBio 2021―Aug―03 The TMPRSS2 Inhibitor Nafamostat Reduces SARS-CoV-2 Pulmonary Infection in Mouse Models of COVID-19 Kun Li, David K. Meyerholz, Jennifer A. Bartlett, Paul B. McCray, Matthew B. Frieman, Diane E. Griffin
591 [GO] mSystems 2021―Aug―03 Catching SARS-CoV-2 by Sequence Hybridization: a Comparative Analysis Alexandra Rehn, Peter Braun, Mandy Knüpfer, Roman Wölfel, Markus H. Antwerpen, Mathias C. Walter, Rachel Mackelprang
592 [GO] mBio 2021―Aug―03 Dynamics of SARS-CoV-2 Spike Proteins in Cell Entry: Control Elements in the Amino-Terminal Domains Enya Qing, Tom Kicmal, Binod Kumar, Grant M. Hawkins, Emily Timm, Stanley Perlman, et al. (+2)
593 [GO] Antimicrobial Agents and Chemotherapy 2021―Aug―02 Candida auris Invasive Infections During a COVID-19 Case Surge Blake M. Hanson, An Q. Dinh, Truc T. Tran, Sebastian Arenas, Darryl Pronty, Hayley B. Gershengorn, et al. (+3)
594 [GO] mBio 2021―Aug―02 Can Science Help Resolve the Controversy on the Origins of the SARS-CoV-2 Pandemic? Arturo Casadevall, Susan R. Weiss, Michael J. Imperiale
595 [GO] Journal of Virology 2021―Jul―28 Kinetic multi-omic analysis of responses to SARS-CoV-2 infection in a model of severe COVID-19 Angelene M. Cantwell, Harinder Singh, Maryann Platt, Yanbao Yu, Yi-Han Lin, Yuji Ikeno, et al. (+4)
596 [GO] Journal of Clinical Microbiology 2021―Jul―28 Performance characteristics of the Roche Diagnostics cobas® Liat® PCR System as a COVID-19 screening tool for hospital admissions in a regional healthcare delivery system Douglas Blackall, Raymond Moreno, Justin Jin, Rachel Plotinsky, Ronald Dworkin, Margret Oethinger
597 [GO] Clinical Microbiology Reviews 2021―Jul―28 SARS-CoV-2 Antiviral Therapy Kaiming Tao, Philip L. Tzou, Janin Nouhin, Hector Bonilla, Prasanna Jagannathan, Robert W. Shafer
598 [GO] Journal of Clinical Microbiology 2021―Jul―28 Assessment of SARS-CoV-2 genome sequencing: quality criteria and low frequency variants Damien Jacot, Trestan Pillonel, Gilbert Greub, Claire Bertelli
599 [GO] Microbiology Spectrum 2021―Jul―28 High-Throughput Multiplex SARS-CoV-2 IgG Microsphere Immunoassay for Dried Blood Spots: A Public Health Strategy for Enhanced Serosurvey Capacity Linda M. Styer, Rebecca Hoen, Jean Rock, Erica Yauney, Katherine Nemeth, Rachel Bievenue, et al. (+2)
600 [GO] mSphere 2021―Jul―28 Long-Term Evolution of SARS-CoV-2 in an Immunocompromised Patient with Non-Hodgkin Lymphoma Vítor Borges, Joana Isidro, Mário Cunha, Daniela Cochicho, Luís Martins, Luís Banha, et al. (+19)
601 [GO] mBio 2021―Jul―27 Murine Monoclonal Antibodies against the Receptor Binding Domain of SARS-CoV-2 Neutralize Authentic Wild-Type SARS-CoV-2 as Well as B.1.1.7 and B.1.351 Viruses and Protect In Vivo in a Mouse Model in a Neutralization-Dependent Manner Fatima Amanat, Shirin Strohmeier, Wen-Hsin Lee, Sandhya Bangaru, Andrew B. Ward, Lynda Coughlan, et al. (+2)
602 [GO] mBio 2021―Jul―27 Recovery from Acute SARS-CoV-2 Infection and Development of Anamnestic Immune Responses in T Cell-Depleted Rhesus Macaques Kim J. Hasenkrug, Friederike Feldmann, Lara Myers, Mario L. Santiago, Kejun Guo, Bradley S. Barrett, et al. (+19)
603 [GO] mSystems 2021―Jul―27 Pathophysiology of SARS-CoV-2 Infection in the Upper Respiratory Tract and Its Relation to Breath Volatile Organic Compounds Moria Lichtenstein, Sondra Turjerman, Jayant M. Pinto, Orna Barash, Omry Koren, Jotham Suez
604 [GO] mBio 2021―Jul―27 D614G Substitution of SARS-CoV-2 Spike Protein Increases Syncytium Formation and Virus Titer via Enhanced Furin-Mediated Spike Cleavage Ya-Wen Cheng, Tai-Ling Chao, Chiao-Ling Li, Sheng-Han Wang, Han-Chieh Kao, Ya-Min Tsai, et al. (+7)
605 [GO] mBio 2021―Jul―27 B.1.526 SARS-CoV-2 Variants Identified in New York City are Neutralized by Vaccine-Elicited and Therapeutic Monoclonal Antibodies Hao Zhou, Belinda M. Dcosta, Marie I. Samanovic, Mark J. Mulligan, Nathaniel R. Landau, Takuya Tada, Vincent R. Racaniello
606 [GO] mSystems 2021―Jul―27 Teaching with Microbes: Lessons from Fermentation during a Pandemic Megan A. Carney, Suzanne Lynn Ishaq
607 [GO] Microbiology Resource Announcements 2021―Jul―22 Genomic Surveillance of SARS-CoV-2 Viruses Collected during the Ending Phase of the First Wave of the COVID-19 Pandemic in Bangladesh Munira Jahan, Arittra Bhattacharjee, Raad Rahmat, S. M. Rashedul Islam, Tahmina Akhter, Ishtiaque Ahammad, et al. (+4)
608 [GO] Journal of Clinical Microbiology 2021―Jul―22 Unbiased Pandemic Pathogen Detection and the Federal Register Alexander L. Greninger
609 [GO] Microbiology Spectrum 2021―Jul―21 Coinfections with Other Respiratory Pathogens among Patients with COVID-19 K. Sreenath, Priyam Batra, E. V. Vinayaraj, Ridhima Bhatia, KVP SaiKiran, Vishwajeet Singh, et al. (+9)
610 [GO] mSphere 2021―Jul―21 Amplicon and Metagenomic Analysis of Middle East Respiratory Syndrome (MERS) Coronavirus and the Microbiome in Patients with Severe MERS Waleed Aljabr, Muhannad Alruwaili, Rebekah Penrice-Randal, Abdulrahman Alrezaihi, Abbie Jasmine Harrison, Yan Ryan, et al. (+24)
611 [GO] Applied and Environmental Microbiology 2021―Jul―21 Assessment of antiviral coatings for high-touch surfaces using human coronaviruses HCoV-229E and SARS-CoV-2 S. Butot, L. Baert, S. Zuber
612 [GO] Applied and Environmental Microbiology 2021―Jul―21 Heat-treated virus inactivation rate depends strongly on treatment procedure: illustration with SARS-CoV-2 Amandine Gamble, Robert J. Fischer, Dylan H. Morris, Kwe Claude Yinda, Vincent J. Munster, James O. Lloyd-Smith
613 [GO] Journal of Clinical Microbiology 2021―Jul―21 Multicentre post-implementation assessment of the positive-predictive value of SARS-CoV-2 antigen-based point-of-care tests used for asymptomatic screening of continuing care staff Jamil N Kanji, Dustin T Proctor, William Stokes, Byron M Berenger, James Silvius, Graham Tipples, et al. (+2)
614 [GO] Microbiology Spectrum 2021―Jul―21 Inactivation of SARS-CoV-2 by Simulated Sunlight on Contaminated Surfaces Jérémy Raiteux, Marine Eschlimann, Audrey Marangon, Sophie Rogée, Maylis Dadvisard, Laurent Taysse, et al. (+2)
615 [GO] Journal of Clinical Microbiology 2021―Jul―21 Evaluation of cell-based and surrogate SARS-CoV-2 neutralization assays Anton M. Sholukh, Andrew Fiore-Gartland, Emily S. Ford, Maurine D. Miner, Yixuan J. Hou, Longping V. Tse, et al. (+24)
616 [GO] Microbiology Spectrum 2021―Jul―21 Durable Antibody Responses in Staff at Two Long-Term Care Facilities, during and Post SARS-CoV-2 Outbreaks Emily N. Gallichotte, Mary Nehring, Michael C. Young, Sierra Pugh, Nicole R. Sexton, Emily Fitzmeyer, et al. (+8)
617 [GO] Journal of Clinical Microbiology 2021―Jul―21 A Simple RT-PCR Melting temperature Assay to Rapidly Screen for Widely Circulating SARS-CoV-2 Variants. Padmapriya Banada, Raquel Green, Sukalyani Banik, Abby Chopoorian, Deanna Streck, Robert Jones, et al. (+2)
618 [GO] Journal of Virology 2021―Jul―21 Characterisation of a novel ACE2-based therapeutic with enhanced rather than reduced activity against SARS-CoV-2 variants. Mathieu Ferrari, Leila Mekkaoui, F. Tudor Ilca, Zulaikha Akbar, Reyisa Bughda, Katarina Lamb, et al. (+14)
619 [GO] mBio 2021―Jul―20 Tackling Antimicrobial Resistance in the Shadow of COVID-19 Ami Patel
620 [GO] mBio 2021―Jul―20 Evolutionary Tracking of SARS-CoV-2 Genetic Variants Highlights an Intricate Balance of Stabilizing and Destabilizing Mutations Jobin John Jacob, Karthick Vasudevan, Agila Kumari Pragasam, Karthik Gunasekaran, Balaji Veeraraghavan, Ankur Mutreja, et al. (+2)
621 [GO] Journal of Clinical Microbiology 2021―Jul―19 Closing the Brief Case: A Fatal Case of SARS-CoV-2 Coinfection with Coccidioides in Texas-Another Challenge We Face Marisa C. Nielsen, David Reynoso, Ping Ren, Carey-Ann D. Burnham
622 [GO] Journal of Clinical Microbiology 2021―Jul―19 The Brief Case: A Fatal Case of SARS-CoV-2 Coinfection with Coccidioides in Texas-Another Challenge We Face Marisa C. Nielsen, David Reynoso, Ping Ren, Carey-Ann D. Burnham
623 [GO] Microbiology Resource Announcements 2021―Jul―15 Coding-Complete Genome Sequences of 11 SARS-CoV-2 B.1.1.7 and B.1.351 Variants from Metro Manila, Philippines John Mark Velasco, Piyawan Chinnawirotpisan, Maria Theresa Valderama, Khajohn Joonlasak, Wudtichai Manasatienkij, Angkana Huang, et al. (+9)
624 [GO] Microbiology Resource Announcements 2021―Jul―15 Genome Sequences of 15 SARS-CoV-2 Sublineage B.1.617.2 Strains in Bangladesh Mokibul Hassan Afrad, Manjur Hossain Khan, Sadia Isfat Ara Rahman, Omar Hamza Bin Manjur, Mohabbat Hossain, Ahmed Nawsher Alam, et al. (+7)
625 [GO] Microbiology Spectrum 2021―Jul―14 Saliva Testing Is Accurate for Early-Stage and Presymptomatic COVID-19 Abigail J. Johnson, Shannon Zhou, Susan L. Hoops, Benjamin Hillmann, Matthew Schomaker, Robyn Kincaid, et al. (+7)
626 [GO] Journal of Clinical Microbiology 2021―Jul―14 Performance of the Abbott SARS-CoV-2 IgG II Quantitative antibody assay including the new Variants of Concern (VOC 202012/V1 (UK) and VOC 202012/V2 (South Africa)): And first steps towards global harmonization of COVID-19 antibody methods Emma English, Laura E Cook, Isabelle Piec, Samir Dervisevic, William D Fraser, W. Garry John
627 [GO] Journal of Clinical Microbiology 2021―Jul―14 EARLY LABORATORY DIAGNOSIS OF COVID-19 BY ANTIGEN DETECTION IN BLOOD SAMPLES OF THE SARS-COV-2 NUCLEOCAPSID PROTEIN Rebekka F. Thudium, Malene P. Stoico, Estrid Høgdall, Julie Høgh, Henrik B. Krarup, Margit A. H. Larsen, et al. (+6)
628 [GO] Clinical Microbiology Reviews 2021―Jul―14 Erratum for Ramasamy and Subbian, “Critical Determinants of Cytokine Storm and Type I Interferon Response in COVID-19 Pathogenesis” Santhamani Ramasamy, Selvakumar Subbian
629 [GO] Journal of Virology 2021―Jul―14 SARS-CoV-2 disrupts proximal elements in the JAK-STAT pathway Da-Yuan Chen, Nazimuddin Khan, Brianna J. Close, Raghuveera K. Goel, Benjamin Blum, Alexander H. Tavares, et al. (+13)
630 [GO] Microbiology Spectrum 2021―Jul―14 Self-Collected Gargle Lavage Allows Reliable Detection of SARS-CoV-2 in an Outpatient Setting Johannes Zander, Stephan Scholtes, Maximilian Ottinger, Marcel Kremer, Azadeh Kharazi, Vanessa Stadler, et al. (+5)
631 [GO] Journal of Clinical Microbiology 2021―Jul―14 Considerations from the College of American Pathologists for implementation of an assay for SARS-CoV-2 testing after a change in regulatory status David R. Peaper, Daniel D. Rhoads, Kaede V. Sullivan, Marc R. Couturier, Romney M. Humphries, Isabella W. Martin, et al. (+6)
632 [GO] mBio 2021―Jul―13 Sex Differences in Lung Imaging and SARS-CoV-2 Antibody Responses in a COVID-19 Golden Syrian Hamster Model Santosh Dhakal, Camilo A. Ruiz-Bedoya, Ruifeng Zhou, Patrick S. Creisher, Jason S. Villano, Kirsten Littlefield, et al. (+25)
633 [GO] mSystems 2021―Jul―13 RNA-Protein Interaction Analysis of SARS-CoV-2 5′ and 3′ Untranslated Regions Reveals a Role of Lysosome-Associated Membrane Protein-2a during Viral Infection Rohit Verma, Sandhini Saha, Shiv Kumar, Shailendra Mani, Tushar Kanti Maiti, Milan Surjit, Marta M. Gaglia
634 [GO] Antimicrobial Agents and Chemotherapy 2021―Jul―12 Why Remdesivir Failed: Preclinical Assumptions Overestimate the Clinical Efficacy of Remdesivir for COVID-19 and Ebola Victoria C. Yan, Florian L. Muller
635 [GO] Microbiology Resource Announcements 2021―Jul―08 Genome Sequences of Two Novel Coronavirus (SARS-CoV-2) Isolates from Dhaka, Bangladesh M. Abdul Matin, Abdullah Al Nahid, Bishajit Sarkar, M. Asad Ullah, Yusha Araf, Nihad Adnan, et al. (+3)
636 [GO] Microbiology Resource Announcements 2021―Jul―08 Genome Sequence of a SARS-CoV-2 P.1 Variant of Concern (20J/501Y.V3) from Bangladesh M. Murshed Hasan Sarkar, Mohammad Fazle Alam Rabbi, Shahina Akter, Tanjina Akhtar Banu, Barna Goswami, Iffat Jahan, et al. (+12)
637 [GO] Journal of Clinical Microbiology 2021―Jul―07 Indeterminate QuantiFERON Gold Plus results reveal deficient IFN-γ responses in severely ill COVID-19 patients Jeremy D. Ward, Caleb Cornaby, John Schmitz
638 [GO] mSphere 2021―Jul―07 Longitudinal COVID-19 Surveillance and Characterization in the Workplace with Public Health and Diagnostic Endpoints Manjula Gunawardana, Jessica Breslin, John M. Cortez, Sofia Rivera, Simon Webster, F. Javier Ibarrondo, et al. (+7)
639 [GO] mBio 2021―Jul―06 Methyltransferase-like 3 Modulates Severe Acute Respiratory Syndrome Coronavirus-2 RNA N6-Methyladenosine Modification and Replication Xueyan Zhang, Haojie Hao, Li Ma, Yecheng Zhang, Xiao Hu, Zhen Chen, et al. (+5)
640 [GO] mBio 2021―Jul―06 Replicative Fitness of a SARS-CoV-2 20I/501Y.V1 Variant from Lineage B.1.1.7 in Human Reconstituted Bronchial Epithelium Franck Touret, Léa Luciani, Cécile Baronti, Maxime Cochin, Jean-Sélim Driouich, Magali Gilles, et al. (+4)
641 [GO] Journal of Clinical Microbiology 2021―Jul―02 Evaluation of a rapid antigen test to detect SARS-CoV-2 infection and identify potentially infectious individuals Michael Korenkov, Nareshkumar Poopalasingam, Matthias Madler, Kanika Vanshylla, Ralf Eggeling, Maike Wirtz, et al. (+9)
642 [GO] Microbiology Resource Announcements 2021―Jul―01 New SARS-CoV-2 Variant from Jordan Lo’ai Alanagreh, Mustafa Ababneh, Abdel-Ellah Al-Shudifat, Mai Ajlouny, Hanan Abu-Shaikh, Foad Alzoughool, et al. (+4)
643 [GO] Journal of Clinical Microbiology 2021―Jun―30 Evaluation of the performance of the Associates of Cape Cod STAT™ assay for the diagnosis of invasive fungal disease in critical-care patients with COVID-19. P. Lewis White, Jessica S. Price, Matthijs Backx
644 [GO] Journal of Clinical Microbiology 2021―Jun―30 Increasing the efficiency of a national laboratory response to COVID-19; a nation-wide multicenter evaluation of 47 commercial SARS-CoV-2 immunoassays by 41 laboratories Maaike J. C. van den Beld, Jean-Luc Murk, Jan Kluytmans, Marion P. G. Koopmans, Johan Reimerink, Inge H. M. van Loo, et al. (+4)
645 [GO] Journal of Clinical Microbiology 2021―Jun―30 Comparing Results of Five SARS-CoV-2 Antibody Assays Before and After the First Dose of ChAdOx1 nCoV-19 Vaccine among Health Care Workers Seri Jeong, Nuri Lee, Su Kyung Lee, Eun-Jung Cho, Jungwon Hyun, Min-Jeong Park, et al. (+6)
646 [GO] Journal of Virology 2021―Jun―30 Construction of a non-infectious SARS-CoV-2 replicon for antiviral drug testing and gene function studies Hai Trong Nguyen, Darryl Falzarano, Volker Gerdts, Qiang Liu
647 [GO] Journal of Clinical Microbiology 2021―Jun―30 Implementation of SARS-CoV2 Screening in K-12 Schools using In-School Pooled Molecular Testing and Deconvolution by Rapid Antigen Test Nira R. Pollock, David Berlin, Sandra C. Smole, Lawrence C. Madoff, Catherine Brown, Kelsey Henderson, et al. (+5)
648 [GO] Journal of Clinical Microbiology 2021―Jun―30 Assessing the quality of serological testing in the CoViD-19 pandemic: results of a European external quality assessment (EQA) scheme for anti-SARS-CoV-2 antibody detection Volker Ast, Victor Costina, Romy Eichner, Anna Bode, Sihem Aida, Catharina Gerhards, et al. (+6)
649 [GO] Applied and Environmental Microbiology 2021―Jun―30 Biofilms and coronaviruses reservoirs: a perspective review Rafael Gomes Von Borowski, Danielle Silva Trentin
650 [GO] Microbiology Spectrum 2021―Jun―30 Anti-Spike Protein Assays to Determine SARS-CoV-2 Antibody Levels: a Head-to-Head Comparison of Five Quantitative Assays Thomas Perkmann, Nicole Perkmann-Nagele, Thomas Koller, Patrick Mucher, Astrid Radakovics, Rodrig Marculescu, et al. (+5)
651 [GO] mSphere 2021―Jun―30 Molecular Epidemiology of SARS-CoV-2 in Greece Reveals Low Rates of Onward Virus Transmission after Lifting of Travel Restrictions Based on Risk Assessment during Summer 2020 Evangelia Georgia Kostaki, Georgios A. Pavlopoulos, Kleio-Maria Verrou, Giannis Ampatziadis-Michailidis, Vaggelis Harokopos, Pantelis Hatzis, et al. (+27)
652 [GO] Journal of Clinical Microbiology 2021―Jun―30 Diagnostic accuracy of SARS-CoV-2 rapid antigen detection testing in symptomatic and asymptomatic children in the clinical setting Arnaud G. L’Huillier, Matthieu Lacour, Debora Sadiku, Mehdi A. Gadiri, Loraine De Siebenthal, Manuel Schibler, et al. (+7)
653 [GO] mBio 2021―Jun―29 Diverse Humoral Immune Responses in Younger and Older Adult COVID-19 Patients Jennifer M. Sasson, Joseph J. Campo, Rebecca M. Carpenter, Mary K. Young, Arlo Z. Randall, Krista Trappl-Kimmons, et al. (+10)
654 [GO] mBio 2021―Jun―29 Identification of a High-Frequency Intrahost SARS-CoV-2 Spike Variant with Enhanced Cytopathic and Fusogenic Effects Lynda Rocheleau, Geneviève Laroche, Kathy Fu, Corina M. Stewart, Abdulhamid O. Mohamud, Marceline Côté, et al. (+4)
655 [GO] Antimicrobial Agents and Chemotherapy 2021―Jun―28 Pharmacokinetics and safety of XAV-19, a swine glyco-humanized polyclonal anti-SARS-CoV-2 antibody, for COVID-19-related moderate pneumonia: a randomized, double-blind, placebo-controlled, phase IIa study Benjamin Gaborit, Eric Dailly, Bernard Vanhove, Régis Josien, Karine Lacombe, Vincent Dubee, et al. (+13)
656 [GO] Journal of Clinical Microbiology 2021―Jun―24 Anti-SARS-CoV-2 antibody levels measured by the Advise Dx SARS-CoV-2 assay are concordant with previously available serologic assays but are not fully predictive of sterilizing immunity Benjamin T. Bradley, Andrew Bryan, Susan L. Fink, Erin A. Goecker, Pavitra Roychoudhury, Meei-Li Huang, et al. (+16)
657 [GO] Journal of Virology 2021―Jun―23 SARS-CoV-2 spike protein induces paracrine senescence and leukocyte adhesion in endothelial cells Keith Meyer, Tapas Patra, Ranjit Ray
658 [GO] mSphere 2021―Jun―23 Replication Kinetics, Cell Tropism, and Associated Immune Responses in SARS-CoV-2- and H5N1 Virus-Infected Human Induced Pluripotent Stem Cell-Derived Neural Models Lisa Bauer, Bas Lendemeijer, Lonneke Leijten, Carmen W. E. Embregts, Barry Rockx, Steven A. Kushner, et al. (+3)
659 [GO] mBio 2021―Jun―22 Allosteric Activation of SARS-CoV-2 RNA-Dependent RNA Polymerase by Remdesivir Triphosphate and Other Phosphorylated Nucleotides Bing Wang, Vladimir Svetlov, Yuri I. Wolf, Eugene V. Koonin, Evgeny Nudler, Irina Artsimovitch, Richard Gerald Brennan
660 [GO] Antimicrobial Agents and Chemotherapy 2021―Jun―17 Erratum for Lu et al., “Development of a Simple In Vitro Assay To Identify and Evaluate Nucleotide Analogs against SARS-CoV-2 RNA-Dependent RNA Polymerase” Gaofei Lu, Xi Zhang, Weinan Zheng, Jialei Sun, Lan Hua, Lan Xu, et al. (+3)
661 [GO] Journal of Virology 2021―Jun―16 Contribution of SARS-CoV-2 accessory proteins to viral pathogenicity in K18 hACE2 transgenic mice Jesus A. Silvas, Desarey Morales Vasquez, Jun-Gyu Park, Kevin Chiem, Anna Allué-Guardia, Andreu Garcia-Vilanova, et al. (+11)
662 [GO] mSphere 2021―Jun―16 SARS-CoV-2 B.1.1.7 Infection of Syrian Hamster Does Not Cause More Severe Disease, and Naturally Acquired Immunity Confers Protection Ivette A. Nuñez, Christopher Z. Lien, Prabhuanand Selvaraj, Charles B. Stauft, Shufeng Liu, Matthew F. Starost, et al. (+2)
663 [GO] Microbiology Spectrum 2021―Jun―16 Structural Basis and Function of the N Terminus of SARS-CoV-2 Nonstructural Protein 1 Kaitao Zhao, Zunhui Ke, Hongbing Hu, Yahui Liu, Aixin Li, Rong Hua, et al. (+10)
664 [GO] Journal of Virology 2021―Jun―16 SARS-CoV-2 NSP12 protein is not an IFN-β antagonist Aixin Li, Kaitao Zhao, Bei Zhang, Rong Hua, Yujie Fang, Wuhui Jiang, et al. (+8)
665 [GO] Microbiology Spectrum 2021―Jun―16 Spike Protein Antibodies Mediate the Apparent Correlation between SARS-CoV-2 Nucleocapsid Antibodies and Neutralization Test Results Thomas Perkmann, Thomas Koller, Nicole Perkmann-Nagele, Miriam Klausberger, Mark Duerkop, Barbara Holzer, et al. (+8)
666 [GO] Journal of Clinical Microbiology 2021―Jun―16 Evaluation of Self-Collected Mid-Turbinate Nasal Swabs and Saliva for Detection of SARS-CoV-2 RNA Aimee C. Boerger, Seanne Buckwalter, Emily C. Fernholz, Paul J. Jannetto, Matthew J. Binnicker, Katelyn Reed, et al. (+4)
667 [GO] mSphere 2021―Jun―16 Liquid Chalk Is an Antiseptic against SARS-CoV-2 and Influenza A Respiratory Viruses Julie L. McAuley, Joshua M. Deerain, William Hammersla, Turgut E. Aktepe, Damian F. J. Purcell, Jason M. Mackenzie, Matthew B. Frieman
668 [GO] mSystems 2021―Jun―15 Rapid Increase of SARS-CoV-2 Variant B.1.1.7 Detected in Sewage Samples from England between October 2020 and January 2021 Thomas Wilton, Erika Bujaki, Dimitra Klapsa, Manasi Majumdar, Maria Zambon, Martin Fritzsche, et al. (+3)
669 [GO] Molecular and Cellular Biology 2021―Jun―14 Understanding individual SARS-CoV-2 proteins for targeted drug development against COVID-19 Joyce van de Leemput, Zhe Han
670 [GO] Microbiology Spectrum 2021―Jun―13 Genomic and Phenotypic Analysis of COVID-19-Associated Pulmonary Aspergillosis Isolates of Aspergillus fumigatus Jacob L. Steenwyk, Matthew E. Mead, Patrícia Alves de Castro, Clara Valero, André Damasio, Renato A. C. dos Santos, et al. (+12)
671 [GO] Journal of Virology 2021―Jun―13 Viral and host transcriptomes in SARS-CoV-2 infected human lung cells Xuefeng Wang, Yudong Zhao, Feihu Yan, Tiecheng Wang, Weiyang Sun, Na Feng, et al. (+6)
672 [GO] Journal of Virology 2021―Jun―13 N- (4-Hydroxyphenyl) retinamide suppresses SARS-CoV-2 spike protein-mediated cell-cell fusion by a dihydroceramide Δ4-desaturase 1-independent mechanism Yasuhiro Hayashi, Kiyoto Tsuchiya, Mizuki Yamamoto, Yoko Nemoto-Sasaki, Kazunari Tanigawa, Kotaro Hama, et al. (+6)
673 [GO] Journal of Virology 2021―Jun―13 V367F mutation in SARS-CoV-2 spike RBD emerging during the early transmission phase enhances viral infectivity through increased human ACE2 receptor binding affinity Junxian Ou, Zhonghua Zhou, Ruixue Dai, Jing Zhang, Shan Zhao, Xiaowei Wu, et al. (+10)
674 [GO] Antimicrobial Agents and Chemotherapy 2021―Jun―13 Hepatitis C Virus Protease Inhibitors Show Differential Efficacy and Interactions with Remdesivir for Treatment of SARS-CoV-2 in Vitro Karen A. Gammeltoft, Yuyong Zhou, Carlos R. Duarte Hernandez, Andrea Galli, Anna Offersgaard, Rui Costa, et al. (+7)
675 [GO] Journal of Clinical Microbiology 2021―Jun―11 At-home Specimen Self-Collection and Self-Testing for STI Screening Demand Accelerated by the COVID-19 Pandemic - A Review of Laboratory Implementation Issues Ellen N. Kersh, Mayur Shukla, Brian H. Raphael, Melissa Habel, Ina Park
676 [GO] mSphere 2021―Jun―11 Temporal Kinetics of RNAemia and Associated Systemic Cytokines in Hospitalized COVID-19 Patients Debby van Riel, Carmen W. E. Embregts, Gregorius J. Sips, Johannes P. C. van den Akker, Henrik Endeman, Els van Nood, et al. (+8)
677 [GO] mSphere 2021―Jun―11 Antibody Response against SARS-CoV-2 and Seasonal Coronaviruses in Nonhospitalized COVID-19 Patients Natalia Ruetalo, Ramona Businger, Karina Althaus, Simon Fink, Felix Ruoff, Michaela Pogoda, et al. (+8)
678 [GO] Journal of Clinical Microbiology 2021―Jun―11 Nasal Swab Performance by Collection Timing, Procedure, and Method of Transport for Patients with SARS-CoV-2 Cody Callahan, Rose A. Lee, Ghee Rye Lee, Kate Zulauf, James E. Kirby, Ramy Arnaout
679 [GO] Microbiology Resource Announcements 2021―Jun―11 Accessible and Validated Processing of SARS-CoV-2 from Wastewater Nicole C. Rondeau, Oliver J. Rose, Lina A. Ariyan, Brian J. Mailloux, JJ L. Miranda, Irene L. G. Newton
680 [GO] Microbiology Resource Announcements 2021―Jun―11 Genome Sequences of SARS-CoV-2 P.1 (Variant of Concern) and P.2 (Variant of Interest) Identified in Uruguay Yanina Panzera, Natalia Goñi, Lucía Calleros, Natalia Ramos, Sandra Frabasile, Ana Marandino, et al. (+15)
681 [GO] mBio 2021―Jun―11 Convalescent-Phase Sera and Vaccine-Elicited Antibodies Largely Maintain Neutralizing Titer against Global SARS-CoV-2 Variant Spikes Takuya Tada, Belinda M. Dcosta, Marie I. Samanovic, Ramin S. Herati, Amber Cornelius, Hao Zhou, et al. (+5)
682 [GO] mSphere 2021―Jun―11 IMMUNO-COV v2.0: Development and Validation of a High-Throughput Clinical Assay for Measuring SARS-CoV-2-Neutralizing Antibody Titers Rianna Vandergaast, Timothy Carey, Samantha Reiter, Chase Lathrum, Patrycja Lech, Clement Gnanadurai, et al. (+18)
683 [GO] Journal of Virology 2021―Jun―11 Identification of an intramolecular switch that controls the interaction of the helicase nsp10 with the membrane-associated nsp12 of porcine reproductive and respiratory syndrome virus Yunhao Hu, Purui Ke, Peng Gao, Yongning Zhang, Lei Zhou, Xinna Ge, et al. (+3)
684 [GO] Microbiology Resource Announcements 2021―Jun―11 Complete Coding Genome Sequence of a Novel Porcine Reproductive and Respiratory Syndrome Virus 2 Restriction Fragment Length Polymorphism 1-4-4 Lineage 1C Variant Identified in Iowa, USA Giovani Trevisan, Ganwu Li, Cesar A. A. Moura, Katie Coleman, Pete Thomas, Jianqiang Zhang, et al. (+4)
685 [GO] Microbiology Resource Announcements 2021―Jun―09 Metatranscriptomic Analysis Reveals SARS-CoV-2 Mutations in Wastewater of the Frankfurt Metropolitan Area in Southern Germany Shelesh Agrawal, Laura Orschler, Susanne Lackner, Simon Roux
686 [GO] Journal of Clinical Microbiology 2021―Jun―05 Multiplex SARS-CoV-2 Genotyping RT-PCR for Population-Level Variant Screening and Epidemiologic Surveillance Hannah Wang, Jacob A. Miller, Michelle Verghese, Mamdouh Sibai, Daniel Solis, Kenji O. Mfuh, et al. (+8)
687 [GO] Journal of Virology 2021―Jun―04 Coronavirus PEDV nucleocapsid protein interacts with p53 to induce cell cycle arrest in S-phase and promotes viral replication Mingjun Su, Da Shi, Xiaoxu Xing, Shanshan Qi, Dan Yang, Jiyu Zhang, et al. (+11)
688 [GO] Journal of Clinical Microbiology 2021―Jun―03 Plaque assay and improved yield of human coronaviruses in a human rhabdomyosarcoma cell line O W Schmidt, M K Cooney, G E Kenny
689 [GO] Journal of Microbiology and Biology Education 2021―May―31 Moving a Flipped Class Online To Teach Python to Biomedical Ph.D. Students during COVID-19 and Beyond Nathalie A. Vladis, Bradley I. Coleman
690 [GO] Microbiology Spectrum 2021―May―31 Pandemics and People Michael J. Imperiale, Patricia A Bradford
691 [GO] Microbiology Resource Announcements 2021―May―30 Genome Sequencing Identified a SARS-CoV-2 Lineage B.1.1.7 Strain with a High Number of Mutations from Dhaka, Bangladesh Razib Mazumder, Ahmed Abdullah, Mohammad Enayet Hossain, M. Mahfuzur Rahman, Omar Hamza Bin Manjur, Mustafizur Rahman, et al. (+2)
692 [GO] Journal of Clinical Microbiology 2021―May―29 Detection of neonatal calf diarrhea virus, infant reovirus-like diarrhea virus, and a coronavirus using the fluorescent virus precipitin test M W Peterson, R S Spendlove, R A Smart
693 [GO] Microbiology Resource Announcements 2021―May―28 Genome Sequence of a SARS-CoV-2 VUI 202012/01 Strain Identified from a Patient Returning from London, England, to the Apulia Region of Italy Daniela Loconsole, Anna Sallustio, Marisa Accogli, Francesca Centrone, Loredana Capozzi, Laura Del Sambro, et al. (+3)
694 [GO] Journal of Clinical Microbiology 2021―May―26 Quantitation of Antibody to Non-Hemagglutinating Viruses by Single Radial Hemolysis: Serological Test for Human Coronaviruses John C. Hierholzer, Gregory A. Tannock
695 [GO] mSphere 2021―May―25 Shedding of Viable Virus in Asymptomatic SARS-CoV-2 Carriers Takayuki Murata, Aki Sakurai, Masahiro Suzuki, Satoshi Komoto, Tomihiko Ide, Takuma Ishihara, et al. (+2)
696 [GO] Journal of Clinical Microbiology 2021―May―20 Mutation-specific SARS-CoV-2 PCR Screen: Rapid and Accurate Detection of Variants of Concern and the Identification of a Newly Emerging Variant with Spike L452R Mutation Huanyu Wang, Sophonie Jean, Richard Eltringham, John Madison, Pamela Snyder, Huolin Tu, et al. (+2)
697 [GO] Journal of Virology 2021―May―19 Structural analysis of the OC43 coronavirus 2′-O-RNA methyltransferase Pavel Dostalik, Petra Krafcikova, Jan Silhan, Jan Kozic, Dominika Chalupska, Karel Chalupsky, Evzen Boura
698 [GO] Journal of Virology 2021―May―19 Unique mutations in the MHV macrodomain differentially attenuate virus replication, indicating multiple roles for the macrodomain in coronavirus replication Lynden S. Voth, Joseph J. O’Connor, Catherine M. Kerr, Ethan Doerger, Nancy Schwarting, Parker Sperstad, et al. (+2)
699 [GO] Microbiology Resource Announcements 2021―May―19 Complete Genome Sequence of a SARS-CoV-2 Strain Sampled in Morocco in May 2020, Obtained Using Sanger Sequencing Abderrazak Rfaki, Nadia Touil, Mouhssine Hemlali, Sanaâ Alaoui Amine, Marouane Melloul, Moulay Abdelaziz El Alaoui, et al. (+6)
700 [GO] mSphere 2021―May―18 High-Surety Isothermal Amplification and Detection of SARS-CoV-2 Sanchita Bhadra, Timothy E. Riedel, Simren Lakhotia, Nicholas D. Tran, Andrew D. Ellington, Angela L. Rasmussen
701 [GO] Antimicrobial Agents and Chemotherapy 2021―May―17 Nodosome inhibition as a novel broad-spectrum antiviral strategy against arboviruses, enteroviruses and SARS-CoV-2 Daniel Limonta, Lovely Dyna-Dagman, William Branton, Valeria Mancinelli, Tadashi Makio, Richard W. Wozniak, et al. (+2)
702 [GO] Journal of Virology 2021―May―13 Host-virus chimeric events in SARS-CoV2 infected cells are infrequent and artifactual Bingyu Yan, Srishti Chakravorty, Carmen Mirabelli, Luopin Wang, Jorge L. Trujillo-Ochoa, Daniel Chauss, et al. (+6)
703 [GO] mSphere 2021―May―12 Leptin Deficiency, Caused by Malnutrition, Makes You Susceptible to SARS-CoV-2 Infection but Could Offer Protection from Severe COVID-19 Dewald Schoeman, Burtram C. Fielding, Marcela F. Pasetti
704 [GO] mSphere 2021―May―12 Antibody (Serology) Tests for COVID-19: a Case Study Rachel M. West, Amanda Kobokovich, Nancy Connell, Gigi Kwik Gronvall, Michael J. Imperiale
705 [GO] Clinical Microbiology Reviews 2021―May―11 Critical Determinants of Cytokine Storm and Type I Interferon Response in COVID-19 Pathogenesis Santhamani Ramasamy, Selvakumar Subbian
706 [GO] Clinical Microbiology Reviews 2021―May―11 Tools and Techniques for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/COVID-19 Detection Seyed Hamid Safiabadi Tali, Jason J. LeBlanc, Zubi Sadiq, Oyejide Damilola Oyewunmi, Carolina Camargo, Bahareh Nikpour, et al. (+3)
707 [GO] mSphere 2021―May―11 Temporal Dynamics and Evolution of SARS-CoV-2 Demonstrate the Necessity of Ongoing Viral Genome Sequencing in Ontario, Canada Calvin P. Sjaarda, Jennifer L. Guthrie, Samira Mubareka, Jared T. Simpson, Bettina Hamelin, Henry Wong, et al. (+15)
708 [GO] Antimicrobial Agents and Chemotherapy 2021―May―11 Tolerability, Safety, Pharmacokinetics, and Immunogenicity of a Novel SARS-CoV-2 Neutralizing Antibody, Etesevimab in Chinese Healthy Adults: A Randomized, Double-Blind, Placebo-Controlled, First-In-Human Phase 1 Study Xiaojie Wu, Nanyang Li, Guoqin Wang, Wei Liu, Jicheng Yu, Guoying Cao, et al. (+15)
709 [GO] Journal of Clinical Microbiology 2021―May―11 Estimating the false positive rate of highly automated SARS-CoV-2 nucleic acid amplification testing Christopher M. Chandler, Lori Bourassa, Patrick C. Mathias, Alexander L. Greninger
710 [GO] Journal of Clinical Microbiology 2021―May―11 Endemic SARS-CoV-2 polymorphisms can cause a higher diagnostic target failure rate than estimated by aggregate global sequencing data Daniel D. Rhoads, David Plunkett, Joy Nakitandwe, Andrew Dempsey, Zheng Jin Tu, Gary W. Procop, et al. (+4)
711 [GO] mSystems 2021―May―10 Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment Ronan Lordan, Halie M. Rando, Casey S. Greene, Jack A. Gilbert
712 [GO] Journal of Clinical Microbiology 2021―May―10 Performance of three SARS-CoV-2 immunoassays, three rapid lateral flow tests and a novel bead-based affinity surrogate test for the detection of SARS-CoV-2 antibodies in human serum Manuel Krone, Julia Gütling, Johannes Wagener, Thiên-Trí Lâm, Christoph Schoen, Ulrich Vogel, et al. (+11)
713 [GO] mBio 2021―May―10 The SARS-CoV-2 Transcriptome and the Dynamics of the S Gene Furin Cleavage Site in Primary Human Airway Epithelia Wei Zou, Min Xiong, Siyuan Hao, Elizabeth Yan Zhang, Nathalie Baumlin, Michael D. Kim, et al. (+4)
714 [GO] mBio 2021―May―10 An Engineered Receptor-Binding Domain Improves the Immunogenicity of Multivalent SARS-CoV-2 Vaccines Yan Guo, Wenhui He, Huihui Mou, Lizhou Zhang, Jing Chang, Shoujiao Peng, et al. (+10)
715 [GO] Applied and Environmental Microbiology 2021―May―10 Persistence of SARS-CoV-2 virus and viral RNA in relation to surface type and contamination concentration Susan Paton, Antony Spencer, Isobel Garratt, Katy-Anne Thompson, Ikshitaa Dinesh, Paz Aranega-Bou, et al. (+5)
716 [GO] mBio 2021―May―10 Analysis of the Evolution of Pandemic Influenza A(H1N1) Virus Neuraminidase Reveals Entanglement of Different Phenotypic Characteristics Meiling Dai, Wenjuan Du, Carles Martínez-Romero, Tim Leenders, Tom Wennekes, Guus F. Rimmelzwaan, et al. (+6)
717 [GO] mSphere 2021―May―07 The Stability of Model Human Coronaviruses on Textiles in the Environment and during Health Care Laundering Lucy Owen, Maitreyi Shivkumar, Katie Laird, Anice C. Lowen
718 [GO] Journal of Clinical Microbiology 2021―May―06 Genomic elucidation of a COVID-19 resurgence and local transmission of SARS-CoV-2 in Guangzhou, China Hong-Ling Jia, Peng Li, Hong-Jie Liu, Jia-Yong Zhong, Peng-Zhe Qin, Wen-Zhe Su, et al. (+18)
719 [GO] Journal of Virology 2021―May―06 ILRUN downregulates ACE2 expression and blocks infection of human cells by SARS-CoV-2 Leon Tribolet, Marina R. Alexander, Aaron M. Brice, Petrus Jansen van Vuren, Christina L. Rootes, Kostlend Mara, et al. (+7)
720 [GO] Journal of Clinical Microbiology 2021―May―06 Laboratory worker self-contamination with non-infectious SARS-CoV-2 DNA can result in false positive RT-PCR-based surveillance testing Theresa L. Montgomery, Michelle Paavola, Emily A. Bruce, Jason W. Botten, Jessica W. Crothers, Dimitry N. Krementsov
721 [GO] Journal of Virology 2021―May―06 Targeting the conserved stem loop 2 motif in the SARS-CoV-2 genome Valeria Lulla, Michal P. Wandel, Katarzyna J. Bandyra, Rachel Ulferts, Mary Wu, Tom Dendooven, et al. (+12)
722 [GO] Journal of Virology 2021―May―06 SARS-CoV-2 spike protein stabilized in the closed state induces potent neutralizing responses. George W. Carnell, Katarzyna A. Ciazynska, David A. Wells, Xiaoli Xiong, Ernest T. Aguinam, Stephen H. McLaughlin, et al. (+10)
723 [GO] Journal of Clinical Microbiology 2021―May―06 Identification of a SARS-CoV-2 Variant with L452R and E484Q Neutralization Resistance Mutations Michelle Verghese, Becky Jiang, Naomi Iwai, Marilyn Mar, Malaya K. Sahoo, Fumiko Yamamoto, et al. (+5)
724 [GO] Microbiology Resource Announcements 2021―May―05 Detection and Genome Sequencing of SARS-CoV-2 Variants Belonging to the B.1.1.7 Lineage in the Philippines Francis A. Tablizo, Cynthia P. Saloma, Marc Jerrone R. Castro, Kenneth M. Kim, Maria Sofia L. Yangzon, Carlo M. Lapid, et al. (+27)
725 [GO] Journal of Virology 2021―May―05 A cell culture-adapted vaccine virus against the current pandemic African swine fever virus strain M. V. Borca, A. Rai, E. Ramirez-Medina, E. Silva, L. Velazquez-Salinas, E. Vuono, et al. (+3)
726 [GO] mBio 2021―May―03 Galectin-9, a Player in Cytokine Release Syndrome and a Surrogate Diagnostic Biomarker in SARS-CoV-2 Infection Najmeh Bozorgmehr, Siavash Mashhouri, Eliana Perez Rosero, Lai Xu, Shima Shahbaz, Wendy Sligl, et al. (+6)
727 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 The Challenges of Teaching Anatomy and Physiology Laboratory Online in the Time of COVID-19 Claudette P. Davis, Tommy Pinedo
728 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 A Crucial Role for Antimicrobial Stewardship in the Midst of COVID-19 Bindu S. Mayi, Manda Mainville, Rida Altaf, Michelle Lanspa, Sheel Vaniawala, Thomas A. Ollerhead, Aarti Raja
729 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Using Virtual Simulations in Online Laboratory Instruction and Active Learning Exercises as a Response to Instructional Challenges during COVID-19 Kanwal S. Alvarez
730 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Maintaining Student Engagement during an Abrupt Instructional Transition: Lessons Learned from COVID-19 Siena Senn, David R. Wessner
731 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 CURE in Antibiotic Discovery Using a Combination of In-Person, Hands-On Laboratory Activities and Remote, Mentor-Type Experiences during COVID-19 † Mary Ann V. Smith
732 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Motivational Resilience during COVID-19 across At-Risk Undergraduates Jennifer Cromley, Andrea Kunze
733 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Analysis of a COVID-19 Clinical Trial to Emphasize Experimental Design and Quantitative Reasoning in an Introductory Biology Course † Melinda R. Grosser, Rebecca E. Hale
734 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Negative Impacts of the Current COVID-19 Crisis on Science Education in Kenya: How Certain Can We Be About the Efficacy of the Science Learning Framework Online? † Wasonga Michael Opere
735 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Impact of COVID-19 Curricular Shifts on Learning Gains on the Microbiology for Health Sciences Concept Inventory Heather Seitz, Andrea Rediske
736 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Impacts of a COVID-19 E-Service-Learning Module in a Non-Major Biology Course † Sarah Adkins-Jablonsky, Ryleigh Fleming, Marco Esteban, Diana Bucio, J. Jeffrey Morris, Samiksha Raut
737 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Bacterial Unknown Project in the COVID-19 Era: Transition from In-Person Lab Experience to Online Environment ‡ Jennifer Amrein, Zoe Dimond, Julie Reboullet, Eileen Hotze
738 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 The Virtual Streptococcal Seminar Series and Trainee Symposium: Adaptations of a Research Community during the COVID-19 Pandemic Brady L. Spencer, Kelly S. Doran, Lindsey R. Burcham
739 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 The Editors’ Perspectives on Adjusting STEM Education to the “New Normal” during the COVID-19 Pandemic Loretta Brancaccio-Taras, Mary V. Mawn, Josh Premo, Roshini Ramachandran
740 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Fostering Student-Student Interactions in a First-Year Experience Course Taught Online during the COVID-19 Pandemic † Ania A. Majewska, Ethell Vereen
741 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 COVID-360: A Collaborative Effort to Develop a Multidisciplinary Set of Online Resources for Engaging Teaching on the COVID-19 Pandemic † Victoria Del Gaizo Moore, Lisa Z. Scheifele, Joseph W. Chihade, Joseph J. Provost, Jennifer A. Roecklein-Canfield, Nikolaos Tsotakos, Michael J. Wolyniak
742 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Pandemic-Related Instructor Talk: How New Instructors Supported Students at the Onset of the COVID-19 Pandemic † Yee Mey Seah, Ana M. Chang, Smritee Dabee, Brittney Davidge, Jami R. Erickson, Ayokunle O. Olanrewaju, Rebecca M. Price
743 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Teaching during COVID-19 Times: A Community College Perspective † Clay Mazur, Catherine Creech, Jan Just, Cleo Rolle, Sehoya Cotner, James Hewlett
744 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Teaching Interrupted: How COVID-19 Turned Thoughts into Practice † Megan C. Deutschman, Audrey Rose Hyson, Laura C. Seithers, Murray Jensen
745 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Student Engagement Declines in STEM Undergraduates during COVID-19-Driven Remote Learning † Emma R. Wester, Lisa L. Walsh, Sandra Arango-Caro, Kristine L. Callis-Duehl
746 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Undergraduate Research in the Time of COVID-19: A Remote Imaging Protocol for Physically Distanced Students Studying Wildlife † Manuela Tripepi, Tobias Landberg
747 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Exploring the Effects on Student Learning and Engagement of COVID-19: an Innovative and Interdisciplinary Approach Bwalya Lungu, Maria Lungu
748 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Teaching in the Time of COVID-19: Creation of a Digital Internship to Develop Scientific Thinking Skills and Create Science Literacy Exercises for Use in Remote Classrooms † Nancy Boury, Kanwal S. Alvarez, Amaya Garcia Costas, Gwendowlyn S. Knapp, Rebecca L. Seipelt-Thiemann
749 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Disparities in Remote Learning Faced by First-Generation and Underrepresented Minority Students during COVID-19: Insights and Opportunities from a Remote Research Experience Paul H. Barber, Casey Shapiro, Molly S. Jacobs, Leslie Avilez, Katherine I. Brenner, Carmen Cabral, et al. (+15)
750 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Instructional Communities of Practice during COVID-19: Social Networks and Their Implications for Resilience † Daniel Z. Grunspan, Emily A. Holt, Susan M. Keenan
751 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Isn’t It Ironic? Adapting an Elective on Quarantine and Isolation for Online Delivery Due to a Pandemic † Stefanie L. Iverson-Cabral
752 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Development of the Organonitrogen Biodegradation Database: Teaching Bioinformatics and Collaborative Skills to Undergraduates during a Pandemic † Serina L. Robinson, Troy Biernath, Caleb Rosenthal, Dean Young, Lawrence P. Wackett, Betsy M. Martinez-Vaz
753 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Leveraging Virtual Experiences for International Professional Development Opportunities during the Pandemic and Beyond Christina N. Morra, Sarah J. Adkins-Jablonsky, Samiksha A. Raut
754 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Development of Gamified, Interactive, Low-Cost, Flexible Virtual Microbiology Labs That Promote Higher-Order Thinking during Pandemic Instruction † Wendy A. Dustman, Sharon King-Keller, Rolando J. Marquez
755 [GO] Journal of Microbiology and Biology Education 2021―Apr―30 Going Online in Pandemic Time: A DivulgaMicro Workshop Experience † Laura Maria Andrade de Oliveira, Eric Cordeiro-Spinetti, Felipe Piedade Gonçalves Neves, Patricia Sanae Sujii, Rachel Leite Ribeiro, Sidcley Silva de Lyra, et al. (+2)
756 [GO] Antimicrobial Agents and Chemotherapy 2021―Apr―28 Luminore CopperTouch™ surface coating effectively inactivates SARS-CoV-2, Ebola and Marburg in vitro Emily K. Mantlo, Slobodan Paessler, Alexey Seregin, Alfred Mitchell
757 [GO] Antimicrobial Agents and Chemotherapy 2021―Apr―28 Overcoming culture restriction for SARS-CoV-2 in human cells facilitates the screening of compounds inhibiting viral replication Santseharay Ramirez, Carlota Fernandez-Antunez, Andrea Galli, Alexander Underwood, Long V. Pham, Line A. Ryberg, et al. (+10)
758 [GO] Journal of Virology 2021―Apr―28 Inhibitors of coronavirus 3CL proteases protect cells from protease-mediated cytotoxicity Samuel J. Resnick, Sho Iketani, Seo Jung Hong, Arie Zask, Hengrui Liu, Sungsoo Kim, et al. (+12)
759 [GO] mSphere 2021―Apr―27 Predicting COVID-19 Severity with a Specific Nucleocapsid Antibody plus Disease Risk Factor Score Sanjana R. Sen, Emily C. Sanders, Kristin N. Gabriel, Brian M. Miller, Hariny M. Isoda, Gabriela S. Salcedo, et al. (+14)
760 [GO] Journal of Clinical Microbiology 2021―Apr―27 SARS-CoV-2 E gene variant alters analytical sensitivity characteristics of viral detection using a commercial RT-PCR assay Stephen Tahan, Bijal A. Parikh, Lindsay Droit, Meghan A. Wallace, Carey-Ann D. Burnham, David Wang
761 [GO] Journal of Clinical Microbiology 2021―Apr―27 SARS-Cov2 Infection Detection by Polymerase Chain Reaction and Serologic Testing in Clinical Practice Douglas Murad, Sukantha Chandrasekaran, Ajaya Pallai, Omai B. Garner, Christopher T. Denny
762 [GO] Journal of Clinical Microbiology 2021―Apr―27 Differential Performance of CoronaCHEK SARS-CoV-2 Lateral Flow Antibody Assay by Geographic Origin of Samples Owen R. Baker, M. Kate Grabowski, Ronald M. Galiwango, Aminah Nalumansi, Jennifer Serwanga, William Clarke, et al. (+10)
763 [GO] mBio 2021―Apr―26 Analysis of the Long-Term Impact on Cellular Immunity in COVID-19-Recovered Individuals Reveals a Profound NKT Cell Impairment Jia Liu, Xuecheng Yang, Hua Wang, Ziwei Li, Hui Deng, Jing Liu, et al. (+21)
764 [GO] Journal of Virology 2021―Apr―26 Human nasal and lung tissues infected ex vivo with SARS-CoV-2 provide insights into differential tissue-specific and virus-specific innate immune responses in the upper and lower respiratory tract Or Alfi, Arkadi Yakirevitch, Ori Wald, Ori Wandel, Uzi Izhar, Esther Oiknine-Djian, et al. (+15)
765 [GO] Journal of Virology 2021―Apr―26 Correlates of Neutralization Against SARS-CoV-2 Variants of Concern by Early Pandemic Sera Samuel J. Vidal, Ai-ris Y. Collier, Jingyou Yu, Katherine McMahan, Lisa H. Tostanoski, John D. Ventura, et al. (+11)
766 [GO] mBio 2021―Apr―26 ColdZyme Maintains Integrity in SARS-CoV-2-Infected Airway Epithelia W. Posch, J. Vosper, V. Zaderer, A. Noureen, S. Constant, R. Bellmann-Weiler, et al. (+3)
767 [GO] mSystems 2021―Apr―24 COVID-19 Pandemic in Lebanon: One Year Later, What Have We Learnt? Jad Koweyes, Tamara Salloum, Siwar Haidar, Georgi Merhi, Sima Tokajian, Suleyman Yildirim
768 [GO] Microbiology Resource Announcements 2021―Apr―21 Report of SARS-CoV-2 B1.1.7 Lineage in Morocco Mouna Ouadghiri, Tarik Aanniz, Abdelomunim Essabbar, Myriam Seffar, Hakima Kabbaj, Ghizlane El Amin, et al. (+5)
769 [GO] mSphere 2021―Apr―20 Single-Dilution COVID-19 Antibody Test with Qualitative and Quantitative Readouts Robert H. Bortz, Catalina Florez, Ethan Laudermilch, Ariel S. Wirchnianski, Gorka Lasso, Ryan J. Malonis, et al. (+36)
770 [GO] mSphere 2021―Apr―20 Term Human Placental Trophoblasts Express SARS-CoV-2 Entry Factors ACE2, TMPRSS2, and Furin Yingshi Ouyang, Tarique Bagalkot, Wendy Fitzgerald, Elena Sadovsky, Tianjiao Chu, Ana Martínez-Marchal, et al. (+6)
771 [GO] mSphere 2021―Apr―20 SARS-CoV-2 Antibody Seroprevalence in Wuhan, China, from 23 April to 24 May 2020 Huan Han, Junzhu Yi, Gongbo Cheng, Wuhui Jiang, Grzegorz M. Brożek, Yingan Jiang, et al. (+3)
772 [GO] Journal of Virology 2021―Apr―20 SARS-CoV-2 non-structural protein 1 inhibits the interferon response by causing depletion of key host signaling factors. Anil Kumar, Ray Ishida, Tania Strilets, Jamie Cole, Joaquin Lopez-Orozco, Nawell Fayad, et al. (+8)
773 [GO] mSystems 2021―Apr―19 Indoor Dust as a Matrix for Surveillance of COVID-19 Nicole Renninger, Nicholas Nastasi, Ashleigh Bope, Samuel J. Cochran, Sarah R. Haines, Neeraja Balasubrahmaniam, et al. (+6)
774 [GO] mBio 2021―Apr―19 COVID-19 Severity Is Associated with Differential Antibody Fc-Mediated Innate Immune Functions Opeyemi S. Adeniji, Leila B. Giron, Mansi Purwar, Netanel F. Zilberstein, Abhijeet J. Kulkarni, Maliha W. Shaikh, et al. (+11)
775 [GO] mBio 2021―Apr―19 Markers of Polyfunctional SARS-CoV-2 Antibodies in Convalescent Plasma Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, et al. (+17)
776 [GO] mBio 2021―Apr―19 Infectious Clones Produce SARS-CoV-2 That Causes Severe Pulmonary Disease in Infected K18-Human ACE2 Mice Xiang Liu, Ali Zaid, Joseph R. Freitas, Nigel A. McMillan, Suresh Mahalingam, Adam Taylor, Diane E. Griffin
777 [GO] Applied and Environmental Microbiology 2021―Apr―16 Development of wastewater pooled surveillance of SARS-CoV-2 from congregate living settings Lisa M. Colosi, Katie E. Barry, Shireen M. Kotay, Michael D. Porter, Melinda D. Poulter, Cameron Ratliff, et al. (+6)
778 [GO] Journal of Clinical Microbiology 2021―Apr―15 Cross-reactivity of two SARS-CoV-2 serological assays in a malaria-endemic setting Laura C. Steinhardt, Fehintola Ige, Nnaemeka C. Iriemenam, Stacie M. Greby, Yohhei Hamada, Mabel Uwandu, et al. (+17)
779 [GO] Journal of Clinical Microbiology 2021―Apr―14 Comparison of the quantitative DiaSorin Liaison antigen test to RT-PCR for the diagnosis of COVID-19 in symptomatic and asymptomatic outpatients Stefanie Lefever, Christophe Indevuyst, Lize Cuypers, Klaas Dewaele, Nicolas Yin, Frédéric Cotton, et al. (+8)
780 [GO] Microbiology Resource Announcements 2021―Apr―14 Whole-Genome Sequence of Avian coronavirus from a 15-Year-Old Sample Confirms Evidence of GA08-like Strain Circulation 4 Years Prior to Its First Reported Outbreak Iryna V. Goraichuk, James F. Davis, Arun B. Kulkarni, Claudio L. Afonso, David L. Suarez, Jelle Matthijnssens
781 [GO] Microbiology Resource Announcements 2021―Apr―14 Genome Sequences of Three SARS-CoV-2 ORF7a Deletion Variants Obtained from Patients in Hong Kong Herman Tse, Sally Cheuk-Ying Wong, Ka-Fai Ip, Vincent Chi-Chung Cheng, Kelvin Kai-Wang To, David Christopher Lung, et al. (+2)
782 [GO] Microbiology Resource Announcements 2021―Apr―14 Genome Sequences of Five SARS-CoV-2 Variants from Mumbai, India, Obtained by Nanopore Sequencing Kayzad Nilgiriwala, Ayan Mandal, Grishma Patel, Tejal Mestry, Smriti Vaswani, Ambreen Shaikh, et al. (+7)
783 [GO] Journal of Clinical Microbiology 2021―Apr―13 Impact of COVID-19 shelter-in-place order on transmission of gastrointestinal pathogens in Northern California Philip L. Bulterys, Nicole Y. Leung, Atif Saleem, Indre Budvytiene, Niaz Banaei
784 [GO] mBio 2021―Apr―12 SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98 Amin Addetia, Nicole A. P. Lieberman, Quynh Phung, Tien-Ying Hsiang, Hong Xie, Pavitra Roychoudhury, et al. (+8)
785 [GO] Journal of Clinical Microbiology 2021―Apr―08 A SARS-CoV-2 Label-Free Surrogate Virus Neutralization Test and a Longitudinal Study of Antibody Characteristics in COVID-19 Patients Yiqi Ruben Luo, Cassandra Yun, Indrani Chakraborty, Alan H.B. Wu, Kara L. Lynch
786 [GO] Journal of Clinical Microbiology 2021―Apr―08 Clinical evaluation of the Abbott Alinity SARS-CoV-2 spike-specific quantitative IgG and IgM assays among infected, recovered, and vaccinated groups Madhusudhanan Narasimhan, Lenin Mahimainathan, Ellen Araj, Andrew E. Clark, John Markantonis, Allen Green, et al. (+14)
787 [GO] Journal of Virology 2021―Apr―08 Transmission and protection against re-infection in the ferret model with the SARS-CoV-2 USA-WA1/2020 reference isolate Devanshi R. Patel, Cassandra J. Field, Kayla M. Septer, Derek G. Sim, Matthew J. Jones, Talia A. Heinly, et al. (+3)
788 [GO] mBio 2021―Apr―05 Multidisciplinary Approaches Identify Compounds that Bind to Human ACE2 or SARS-CoV-2 Spike Protein as Candidates to Block SARS-CoV-2-ACE2 Receptor Interactions Christopher J. Day, Benjamin Bailly, Patrice Guillon, Larissa Dirr, Freda E.-C. Jen, Belinda L. Spillings, et al. (+6)
789 [GO] Journal of Clinical Microbiology 2021―Apr―02 Development and validation of a multiplex microsphere immunoassay using dried blood spots for SARS-CoV-2 seroprevalence: application in first responders in Colorado, USA Jonathan S. Schultz, Mary K. McCarthy, Cody Rester, Katherine R. Sabourin, Kyle Annen, Melkon DomBourian, et al. (+7)
790 [GO] Journal of Virology 2021―Apr―01 Activation of STING signaling pathway effectively blocks human coronavirus infection Wei Liu, Hanako M. Reyes, June F. Yang, Yize Li, Kathleen M. Stewart, Maria C. Basil, et al. (+5)
791 [GO] Microbiology Resource Announcements 2021―Mar―31 Genome Sequence of a SARS-CoV-2 Strain from a COVID-19 Clinical Sample from the Khagrachari District of Bangladesh M. Imranul Hoq, Robiul Hasan Bhuiyan, M. Khondakar Raziur Rahman, Imam Hossen, Sajib Rudra, M. Arif Hossain, et al. (+5)
792 [GO] Journal of Virology 2021―Mar―31 The physiological TMPRSS2 inhibitor HAI-2 alleviates SARS-CoV-2 infection Yuriko Tomita, Shutoku Matsuyama, Hideo Fukuhara, Katsumi Maenaka, Hiroaki Kataoka, Takao Hashiguchi, Makoto Takeda
793 [GO] mSphere 2021―Mar―31 Stability of SARS-CoV-2 Spike G614 Variant Surpasses That of the D614 Variant after Cold Storage Sheng-Yu Huang, Yu-An Kung, Peng-Nien Huang, Sheng-Yun Chang, Yu-Nong Gong, Yi-Ju Han, et al. (+8)
794 [GO] Microbiology Resource Announcements 2021―Mar―31 Coding-Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Gilgit, Pakistan Aneela Javed, Saifullah Khan Niazi, Eijaz Ghani, Maham Yamin, Muhammad Saqib, Hussnain A. Janjua, et al. (+2)
795 [GO] Journal of Clinical Microbiology 2021―Mar―30 Diagnosis of SARS-CoV-2 infection with LamPORE, a high-throughput platform combining loop-mediated isothermal amplification and nanopore sequencing Leon Peto, Gillian Rodger, Daniel P Carter, Karen L Osman, Mehmet Yavuz, Katie Johnson, et al. (+16)
796 [GO] mBio 2021―Mar―27 Dynamic Dissection of the Endocytosis of Porcine Epidemic Diarrhea Coronavirus Cooperatively Mediated by Clathrin and Caveolae as Visualized by Single-Virus Tracking Yangyang Li, Jian Wang, Wei Hou, Yanke Shan, Shouyu Wang, Fei Liu, Anne Moscona
797 [GO] Microbiology Resource Announcements 2021―Mar―24 Genome Sequences of Three SARS-CoV-2 P.1 Strains Identified from Patients Returning from Brazil to Italy Emiliano Delli Compagni, Lucija Jurisic, Marialuigia Caporale, Federico Bacà, Silvia Scialabba, Sara Fanì, et al. (+19)
798 [GO] Journal of Clinical Microbiology 2021―Mar―24 Evaluations of SARS-CoV-2 serological assays performance need inclusion of long-term samples Julien Favresse, Jonathan Douxfils
799 [GO] Microbiology Resource Announcements 2021―Mar―24 Near-Complete Genome Sequence of a SARS-CoV-2 VOC 202012/01 Strain in Peru C. Padilla-Rojas, L. Barcena-Flores, K. Vega-Chozo, M. Galarza-Perez, H. Bailon-Calderon, P. Lope-Pari, et al. (+5)
800 [GO] Journal of Microbiology and Biology Education 2021―Mar―23 Genome Analysis of SARS-CoV-2 Case Study: An Undergraduate Online Learning Activity To Introduce Bioinformatics, BLAST, and the Power of Genome Databases † J. Jordan Steel
801 [GO] Journal of Clinical Microbiology 2021―Mar―18 Deep Learning Analysis Improves Specificity of SARS-CoV-2 Real Time PCR David J. Alouani, Roshani R.P. Rajapaksha, Mehul Jani, Daniel D. Rhoads, Navid Sadri
802 [GO] Journal of Virology 2021―Mar―17 The furin-S2’ site in avian coronavirus plays a key role in central nervous system damage progression Jinlong Cheng, Ye Zhao, Yanxin Hu, Jing Zhao, Jia Xue, Guozhong Zhang
803 [GO] Microbiology Resource Announcements 2021―Mar―17 First Report of a SARS-CoV-2 Genome Sequence with a Spike His69-Val70 Deletion and an Asn439Lys Mutation in Morocco Tarik Aanniz, Mouna Ouadghiri, Mohammed Amine Bendahou, Mohammed Walid Chemao-Elfihri, Mohamed Chenaoui, Hanae Dakka, et al. (+8)
804 [GO] Journal of Virology 2021―Mar―17 Deletion of the SARS-CoV-2 Spike Cytoplasmic Tail Increases Infectivity in Pseudovirus Neutralization Assays Jingyou Yu, Zhenfeng Li, Xuan He, Makda S. Gebre, Esther A. Bondzie, Huahua Wan, et al. (+5)
805 [GO] mBio 2021―Mar―15 Critical ACE2 Determinants of SARS-CoV-2 and Group 2B Coronavirus Infection and Replication Lily E. Adams, Kenneth H. Dinnon, Yixuan J. Hou, Timothy P. Sheahan, Mark T. Heise, Ralph S. Baric, Diane E. Griffin
806 [GO] Journal of Virology 2021―Mar―11 Cryo-EM structure of S-Trimer, a subunit vaccine candidate for COVID-19 Jiahao Ma, Danmei Su, Yinyan Sun, Xueqin Huang, Ying Liang, Linqiang Fang, et al. (+4)
807 [GO] Journal of Virology 2021―Mar―11 Coronavirus-Specific Antibody Cross Reactivity in Rhesus Macaques Following SARS-CoV-2 Vaccination and Infection Catherine Jacob-Dolan, Jared Feldman, Katherine McMahan, Jingyou Yu, Roland Zahn, Frank Wegmann, et al. (+3)
808 [GO] Journal of Virology 2021―Mar―11 The PRRA insert at the S1/S2 site modulates cellular tropism of SARS-CoV-2 and ACE2 usage by the closely related Bat RaTG13 Shufeng Liu, Prabhuanand Selvaraj, Christopher Z. Lien, Ivette A. Nunez, Wells W. Wu, Chao-Kai Chou, Tony T. Wang
809 [GO] Microbiology Resource Announcements 2021―Mar―10 Coding-Complete Genome Sequences and Mutation Profiles of Nine SARS-CoV-2 Strains Detected from COVID-19 Patients in Bangladesh Nihad Adnan, Mohib Ullah Khondoker, M. Shaminur Rahman, M. Firoz Ahmed, Shahana Sharmin, Nadim Sharif, et al. (+15)
810 [GO] Journal of Virology 2021―Mar―10 Susceptibility of white-tailed deer (Odocoileus virginianus) to SARS-CoV-2 Mitchell V. Palmer, Mathias Martins, Shollie Falkenberg, Alexandra Buckley, Leonardo C. Caserta, Patrick K. Mitchell, et al. (+8)
811 [GO] Journal of Virology 2021―Mar―10 SARS-CoV-2 rapidly adapts in aged BALB/c mice and induces typical pneumonia Yufei Zhang, Kun Huang, Ting Wang, Fei Deng, Wenxiao Gong, Xianfeng Hui, et al. (+13)
812 [GO] Microbiology Resource Announcements 2021―Mar―10 Coding-Complete Genome Sequence and Phylogenetic Relatedness of a SARS-CoV-2 Strain Detected in March 2020 in Cameroon Richard Njouom, Serge Alain Sadeuh-Mba, Jules Tchatchueng, Moussa Moïse Diagne, Ndongo Dia, Paul Alain Ngoupo Tagnouokam, et al. (+10)
813 [GO] mSphere 2021―Mar―09 Original Antigenic Sin: the Downside of Immunological Memory and Implications for COVID-19 Eric L. Brown, Heather T. Essigmann, David W. Pascual
814 [GO] mBio 2021―Mar―08 The Principles of Antibody Therapy for Infectious Diseases with Relevance for COVID-19 Arturo Casadevall, Liise-anne Pirofski, Michael J. Joyner, Danielle A. Garsin
815 [GO] mSystems 2021―Mar―08 High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County Smruthi Karthikeyan, Nancy Ronquillo, Pedro Belda-Ferre, Destiny Alvarado, Tara Javidi, Christopher A. Longhurst, et al. (+2)
816 [GO] Journal of Clinical Microbiology 2021―Mar―08 Evaluation of specimen types and saliva stabilization solutions for SARS-CoV-2 testing Sara B Griesemer, Greta Van Slyke, Dylan Ehrbar, Klemen Strle, Tugba Yildirim, Dominick A Centurioni, et al. (+4)
817 [GO] Journal of Clinical Microbiology 2021―Mar―05 Portable RT-PCR system: A Rapid and Scalable Diagnostic Tool for COVID-19 Testing Hosam M Zowawi, Thamer H Alenazi, Waleed S AlOmaim, Ahmad Wazzan, Abdullah Alsufayan, Rihab A Hasanain, et al. (+9)
818 [GO] Journal of Virology 2021―Mar―04 Potent Neutralization of SARS-CoV-2 by Hetero-bivalent Alpaca Nanobodies Targeting the Spike Receptor-Binding Domain Huan Ma, Weihong Zeng, Xiangzhi Meng, Xiaoxue Huang, Yunru Yang, Dan Zhao, et al. (+9)
819 [GO] Antimicrobial Agents and Chemotherapy 2021―Mar―03 Human Safety, Tolerability, and Pharmacokinetics of Molnupiravir, a Novel Broad-Spectrum Oral Antiviral Agent with Activity Against SARS-CoV-2 Wendy P. Painter, Wayne Holman, Jim A. Bush, Firas Almazedi, Hamzah Malik, Nicola C. J. E. Eraut, et al. (+3)
820 [GO] Journal of Clinical Microbiology 2021―Mar―03 Rapid High Throughput Whole Genome Sequencing of SARS-CoV-2 by using One-step RT-PCR Amplification with Integrated Microfluidic System and Next-Gen Sequencing Tao Li, Hye Kyung Chung, Papa K. Pireku, Brett F. Beitzel, Mark A. Sanborn, Cynthia Y. Tang, et al. (+5)
821 [GO] Antimicrobial Agents and Chemotherapy 2021―Mar―03 The anti-influenza virus drug favipiravir has little effect on replication of SARS-CoV-2 in cultured cells Yuriko Tomita, Makoto Takeda, Shutoku Matsuyama
822 [GO] Microbiology Resource Announcements 2021―Mar―03 Identification of a SARS-CoV-2 Lineage B1.1.7 Virus in New York following Return Travel from the United Kingdom Leonardo C. Caserta, Patrick K. Mitchell, Elizabeth Plocharczyk, Diego G. Diel, John J. Dennehy
823 [GO] Journal of Clinical Microbiology 2021―Mar―01 Evaluation of Performance of the BD Veritor SARS-CoV-2 Chromatographic Immunoassay Test in COVID-19 Symptomatic Patients Abdullah Kilic, Brian Hiestand, Elizabeth Palavecino
824 [GO] mBio 2021―Mar―01 Genetically Engineered Live-Attenuated Middle East Respiratory Syndrome Coronavirus Viruses Confer Full Protection against Lethal Infection Javier Gutiérrez-Álvarez, José M. Honrubia, Raúl Fernández-Delgado, Li Wang, Carlos Castaño-Rodríguez, Sonia Zúñiga, et al. (+3)
825 [GO] mBio 2021―Mar―01 Development of Spike Receptor-Binding Domain Nanoparticles as a Vaccine Candidate against SARS-CoV-2 Infection in Ferrets Young-Il Kim, Dokyun Kim, Kwang-Min Yu, Hogyu David Seo, Shin-Ae Lee, Mark Anthony B. Casel, et al. (+7)
826 [GO] Journal of Virology 2021―Mar―01 Genomic characterization of a novel SARS-CoV-2 lineage from Rio de Janeiro, Brazil Carolina M. Voloch, Ronaldo da Silva Francisco, Luiz G. P. de Almeida, Cynthia C. Cardoso, Otavio J. Brustolini, Alexandra L. Gerber, et al. (+12)
827 [GO] mBio 2021―Mar―01 Introduction of Two Prolines and Removal of the Polybasic Cleavage Site Lead to Higher Efficacy of a Recombinant Spike-Based SARS-CoV-2 Vaccine in the Mouse Model Fatima Amanat, Shirin Strohmeier, Raveen Rathnasinghe, Michael Schotsaert, Lynda Coughlan, Adolfo García-Sastre, et al. (+2)
828 [GO] Journal of Virology 2021―Feb―26 SARS-CoV-2 causes severe epithelial inflammation and barrier dysfunction Stefanie Deinhardt-Emmer, Sarah Böttcher, Clio Häring, Liane Giebeler, Andreas Henke, Roland Zell, et al. (+14)
829 [GO] Journal of Virology 2021―Feb―25 Potential differences in cleavage of the S protein and type-1 interferon together control human coronavirus infection, propagation, and neuropathology within the central nervous system Alain Le Coupanec, Marc Desforges, Benedikt Kaufer, Philippe Dubeau, Marceline Côté, Pierre J. Talbot
830 [GO] Journal of Virology 2021―Feb―24 A comparative analysis of SARS-CoV-2 antivirals characterizes 3CLpro inhibitor PF-00835231 as a potential new treatment for COVID-19 Maren de Vries, Adil S. Mohamed, Rachel A. Prescott, Ana M. Valero-Jimenez, Ludovic Desvignes, Rebecca O’Connor, et al. (+11)
831 [GO] Microbiology Resource Announcements 2021―Feb―24 In-Frame 12-Nucleotide Deletion within Open Reading Frame 3a in a SARS-CoV-2 Strain Isolated from a Patient Hospitalized with COVID-19 John A. Lednicky, Kartikeya Cherabuddi, Massimiliano S. Tagliamonte, Maha A. Elbadry, Kuttichantran Subramaniam, Thomas B. Waltzek, et al. (+2)
832 [GO] Microbiology Resource Announcements 2021―Feb―24 Genome Sequence of a SARS-CoV-2 Strain from Bangladesh That Is Nearly Identical to United Kingdom SARS-CoV-2 Variant B.1.1.7 Mohammad Enayet Hossain, M. Mahfuzur Rahman, M. Shaheen Alam, Yeasir Karim, Ananya Ferdous Hoque, Sezanur Rahman, et al. (+3)
833 [GO] mSphere 2021―Feb―23 Tuberculosis under the Influence of COVID-19 Lockdowns: Lessons from Tehran, Iran Mansour Kargarpour Kamakoli, Shima Hadifar, Sharareh Khanipour, Ghazaleh Farmanfarmaei, Abolfazl Fateh, Shayan Mostafaei, et al. (+3)
834 [GO] mSystems 2021―Feb―23 Comparative Genomics and Integrated Network Approach Unveiled Undirected Phylogeny Patterns, Co-mutational Hot Spots, Functional Cross Talk, and Regulatory Interactions in SARS-CoV-2 Vipin Gupta, Shazia Haider, Mansi Verma, Nirjara Singhvi, Kalaisaran Ponnusamy, Md. Zubbair Malik, et al. (+8)
835 [GO] Journal of Virology 2021―Feb―19 SARS-CoV-2 and SARS-CoV spike-mediated cell-cell fusion differ in the requirements for receptor expression and proteolytic activation Bojan F. Hörnich, Anna K. Großkopf, Sarah Schlagowski, Matthias Tenbusch, Hannah Kleine-Weber, Frank Neipel, et al. (+2)
836 [GO] Journal of Clinical Microbiology 2021―Feb―19 Assessment of S1, S2 and NCP-specific IgM, IgA, and IgG antibody kinetics in acute SARS-CoV-2 infection by a microarray and twelve other immunoassays Georg Semmler, Marianna Theresia Traugott, Marianne Graninger, Wolfgang Hoepler, Tamara Seitz, Hasan Kelani, et al. (+9)
837 [GO] Journal of Clinical Microbiology 2021―Feb―17 Analytical Sensitivity of the Abbott BinaxNOW COVID-19 Ag Card Garrett A. Perchetti, Meei-Li Huang, Margaret G. Mills, Keith R. Jerome, Alexander L. Greninger, Michael J. Loeffelholz
838 [GO] mSphere 2021―Feb―16 Molecular Evolution of Human Coronavirus 229E in Hong Kong and a Fatal COVID-19 Case Involving Coinfection with a Novel Human Coronavirus 229E Genogroup Susanna K. P. Lau, David C. Lung, Emily Y. M. Wong, Kam Leng Aw-Yong, Antonio C. P. Wong, Hayes K. H. Luk, et al. (+12)
839 [GO] mSphere 2021―Feb―16 Seroprevalence of SARS-CoV-2 Antibodies in Children and Adults in St. Louis, Missouri, USA Brittany K. Smith, Andrew B. Janowski, Jonathan E. Danis, Ian B. Harvey, Haiyan Zhao, Ya-Nan Dai, et al. (+6)
840 [GO] Journal of Clinical Microbiology 2021―Feb―15 Copan eNAT Transport System to Address Challenges in COVID-19 Diagnostics in Regions with Limited Testing Access Melissa Richard-Greenblatt, Courtney E. Comar, Laurence Flevaud, Marina Berti, Rebecca M. Harris, Susan R. Weiss, Laurel Glaser
841 [GO] mBio 2021―Feb―15 The Balance of Neutrophil Extracellular Trap Formation and Nuclease Degradation: an Unknown Role of Bacterial Coinfections in COVID-19 Patients? Nicole de Buhr, Maren von Köckritz-Blickwede, Scot P. Ouellette
842 [GO] mBio 2021―Feb―15 Quantifying Absolute Neutralization Titers against SARS-CoV-2 by a Standardized Virus Neutralization Assay Allows for Cross-Cohort Comparisons of COVID-19 Sera Kasopefoluwa Y. Oguntuyo, Christian S. Stevens, Chuan Tien Hung, Satoshi Ikegame, Joshua A. Acklin, Shreyas S. Kowdle, et al. (+26)
843 [GO] Journal of Clinical Microbiology 2021―Feb―12 Comparison of sixteen serological SARS-CoV-2 immunoassays in sixteen clinical laboratories Lene H. Harritshøj, Mikkel Gybel-Brask, Shoaib Afzal, Pia R. Kamstrup, Charlotte S. Jørgensen, Marianne Kragh Thomsen, et al. (+32)
844 [GO] Journal of Clinical Microbiology 2021―Feb―11 Verification and Validation of SARS-CoV-2 Assay Performance on the Abbott m2000 and Alinity m Systems Julie W. Hirschhorn, April Kegl, Tanisha Dickerson, W. Bailey Glen, Gang Xu, Jay Alden, Frederick S. Nolte
845 [GO] Microbiology Resource Announcements 2021―Feb―10 Coding-Complete Genome Sequences of NITMA1086 and NITMA1139, Two SARS-CoV-2 Isolates from Belagavi District, Karnataka State, India, Harboring the D614G Mutation Ishwar Singh, Umashankar Vetrivel, D. R. Harish, Debprasad Chattophadhyay, John J. Dennehy
846 [GO] Journal of Virology 2021―Feb―10 The polybasic cleavage site in the SARS-CoV-2 spike modulates viral sensitivity to Type I interferon and IFITM2 Helena Winstone, Maria Jose Lista, Alisha C Reid, Clement Bouton, Suzanne Pickering, Rui Pedro Galao, et al. (+4)
847 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 Considering personalized Interferon-β therapy for COVID-19 Karim Dorgham, Avidan U. Neumann, Maxens Decavele, Charles-Edouard Luyt, Hans Yssel, Guy Gorochov
848 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 Plitidepsin: a repurposed drug for the treatment of COVID-19 Miguel Angel Martinez
849 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 AT-527, a double prodrug of a guanosine nucleotide analog, is a potent inhibitor of SARS-CoV-2 in vitro and a promising oral antiviral for treatment of COVID-19 Steven S. Good, Jonna Westover, Kie Hoon Jung, Xiao-Jian Zhou, Adel Moussa, Paolo La Colla, et al. (+3)
850 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 Reply to letter “Considering personalized Interferon-β therapy for COVID-19” Effat Davoudi-Monfared, Hossein Khalili
851 [GO] Antimicrobial Agents and Chemotherapy 2021―Feb―09 Remdesivir for COVID-19: Why Not Dose Higher? Victoria C. Yan, Florian L. Muller
852 [GO] mBio 2021―Feb―08 Characterization of SARS-CoV-2 RNA, Antibodies, and Neutralizing Capacity in Milk Produced by Women with COVID-19 Ryan M. Pace, Janet E. Williams, Kirsi M. Järvinen, Mandy B. Belfort, Christina D. W. Pace, Kimberly A. Lackey, et al. (+16)
853 [GO] mBio 2021―Feb―08 Comorbidities in SARS-CoV-2 Patients: a Systematic Review and Meta-Analysis Wern Hann Ng, Thomas Tipih, Nigel A. Makoah, Jan-G Vermeulen, Dominique Goedhals, Joseph B. Sempa, et al. (+4)
854 [GO] Journal of Clinical Microbiology 2021―Feb―01 Self-collected Saline Gargle Samples as an Alternative to Healthcare Worker Collected Nasopharyngeal Swabs for COVID-19 Diagnosis in Outpatients David M. Goldfarb, Peter Tilley, Ghada N. Al-Rawahi, Jocelyn A. Srigley, Geoffrey Ford, Heather Pedersen, et al. (+7)
855 [GO] mBio 2021―Feb―01 Reply to Marakasova and Baranova, “MMR Vaccine and COVID-19: Measles Protein Homology May Contribute to Cross-Reactivity or to Complement Activation Protection” Jeffrey E. Gold, David J. Hurley, Balázs Rada, William H. Baumgartl, Larry P. Tilley, Warren E. Licht, Liise-anne Pirofski
856 [GO] mBio 2021―Feb―01 MMR Vaccine and COVID-19: Measles Protein Homology May Contribute to Cross-Reactivity or to Complement Activation Protection Ekaterina Marakasova, Ancha Baranova, Liise-anne Pirofski
857 [GO] Journal of Clinical Microbiology 2021―Jan―29 Performance Characteristics of BinaxNOW COVID-19 Antigen Card for Screening Asymptomatic Individuals in a University Setting Nkemakonam C Okoye, Adam P Barker, Kenneth Curtis, Richard R Orlandi, Emily A Snavely, Cameron Wright, et al. (+2)
858 [GO] Antimicrobial Agents and Chemotherapy 2021―Jan―29 Kinetic characterization and inhibitor screening for the proteases leading to identification of drugs against SARS-CoV-2 Chih-Jung Kuo, Tai-Ling Chao, Han-Chieh Kao, Ya-Min Tsai, Yi-Kai Liu, Lily Hui-Ching Wang, et al. (+3)
859 [GO] Journal of Virology 2021―Jan―29 SARS-CoV-2 triggers an MDA-5-dependent interferon response which is unable to control replication in lung epithelial cells Antoine Rebendenne, Ana Luiza Chaves Valadão, Marine Tauziet, Ghizlane Maarifi, Boris Bonaventure, Joe McKellar, et al. (+5)
860 [GO] Journal of Clinical Microbiology 2021―Jan―28 Performance of Saliva, Oropharyngeal Swabs, and Nasal Swabs for SARS-CoV-2 Molecular Detection: A Systematic Review and Meta-analysis Rose A. Lee, Joshua C. Herigon, Andrea Benedetti, Nira R. Pollock, Claudia M. Denkinger
861 [GO] Journal of Clinical Microbiology 2021―Jan―27 Pooling of Nasopharyngeal (NP) Swab Samples to Overcome Global Shortage of rRT-PCR COVID-19 Test Kits Sunil More, Sai Narayanan, Girish Patil, Parna Ghosh, Samuel Pushparaj, Emily Cooper, et al. (+4)
862 [GO] Antimicrobial Agents and Chemotherapy 2021―Jan―27 Limited Utility of Procalcitonin in Identifying Community-Associated Bacterial Infections in Patients Presenting with Coronavirus Disease 2019 Michael May, Michelle Chang, Donald Dietz, Sherif Shoucri, Justin Laracy, Magdalena E. Sobieszczyk, et al. (+3)
863 [GO] Microbiology Resource Announcements 2021―Jan―27 Genome Sequencing of a Novel Coronavirus SARS-CoV-2 Isolate from Iraq Nihad A. M. Al-Rashedi, Danilo Licastro, Sreejith Rajasekharan, Simeone Dal Monego, Alessandro Marcello, Murad G. Munahi, et al. (+9)
864 [GO] Microbiology Resource Announcements 2021―Jan―27 Genome Sequences of 10 SARS-CoV-2 Viral Strains Obtained by Nanopore Sequencing of Nasopharyngeal Swabs in Malta Manuele Biazzo, Silvia Madeddu, Elfath Elnifro, Tessabella Sultana, Josie Muscat, Christian A. Scerri, et al. (+3)
865 [GO] Journal of Clinical Microbiology 2021―Jan―27 Is the patient infected with SARS-CoV-2? Jeffrey D Klausner, Noah Kojima, Susan M. Butler-Wu
866 [GO] Applied and Environmental Microbiology 2021―Jan―25 Time-evolution of SARS-CoV-2 in wastewater during the first pandemic wave of COVID-19 in the metropolitan area of Barcelona. Gemma Chavarria-Miró, Eduard Anfruns-Estrada, Adán Martínez-Velázquez, Mario Vázquez-Portero, Susana Guix, Miquel Paraira, et al. (+4)
867 [GO] Journal of Clinical Microbiology 2021―Jan―22 Lessons in public (mis)communication about the laboratory from the COVID-19 pandemic Benjamin L. Mazer
868 [GO] Journal of Clinical Microbiology 2021―Jan―22 A Scalable, Easy-to-Deploy, Protocol for Cas13-Based Detection of SARS-CoV-2 Genetic Material Jennifer N. Rauch, Eric Valois, Sabrina C. Solley, Friederike Braig, Ryan S. Lach, Morgane Audouard, et al. (+7)
869 [GO] Journal of Virology 2021―Jan―21 The time for COVID-19 vaccination Esteban Domingo, Celia Perales
870 [GO] Journal of Virology 2021―Jan―21 Comparison of Subgenomic and Total RNA in SARS-CoV-2 Challenged Rhesus Macaques Gabriel Dagotto, Noe B. Mercado, David R. Martinez, Yixuan J. Hou, Joseph P. Nkolola, Robert H. Carnahan, et al. (+3)
871 [GO] Journal of Clinical Microbiology 2021―Jan―21 A novel point mutation in the N gene of SARS-CoV-2 may affect the detection of the virus by RT-qPCR Mohammad Rubayet Hasan, Sathyavathi Sundararaju, Chidambaram Manickam, Faheem Mirza, Hamad Al-Hail, Stephan Lorenz, Patrick Tang
872 [GO] Journal of Clinical Microbiology 2021―Jan―20 Comparison of Antibody Class Specific SARS-CoV-2 Serology for the Diagnosis of Acute COVID-19 Hans Verkerke, Michael Horwath, Bejan Saeedi, Darra Boyer, Jerry W. Allen, Joshua Owens, et al. (+29)
873 [GO] Microbiology Resource Announcements 2021―Jan―20 Expression of Concern for Sah et al., “Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal”
874 [GO] Journal of Clinical Microbiology 2021―Jan―20 Assessment of sample pooling for clinical SARS-CoV-2 testing Sara B Griesemer, Greta Van Slyke, Kirsten St. George
875 [GO] mSphere 2021―Jan―19 Interplay of Antibody and Cytokine Production Reveals CXCL13 as a Potential Novel Biomarker of Lethal SARS-CoV-2 Infection Alexander M. Horspool, Theodore Kieffer, Brynnan P. Russ, Megan A. DeJong, M. Allison Wolf, Jacqueline M. Karakiozis, et al. (+9)
876 [GO] mSphere 2021―Jan―19 An Observational Laboratory-Based Assessment of SARS-CoV-2 Molecular Diagnostics in Benin, Western Africa Anna-Lena Sander, Anges Yadouleton, Andres Moreira-Soto, Carine Tchibozo, Gildas Hounkanrin, Yvette Badou, et al. (+13)
877 [GO] Microbiology Resource Announcements 2021―Jan―19 Genomic Sequences and Analysis of Five SARS-CoV-2 Variants Obtained from Patients in Lambayeque, Peru Franklin Rómulo Aguilar-Gamboa, Luis Alberto Salcedo-Mejía, Luis Miguel Serquén-López, Marco Enrique Mechan-Llontop, Percy Omar Tullume-Vergara, Juan José Bonifacio-Briceño, et al. (+4)
878 [GO] mBio 2021―Jan―18 Coronaviruses Associated with the Superfamily Musteloidea Alison E. Stout, Qinghua Guo, Jean K. Millet, Ricardo de Matos, Gary R. Whittaker, Vinayaka R. Prasad
879 [GO] mBio 2021―Jan―18 Stenoparib, an Inhibitor of Cellular Poly(ADP-Ribose) Polymerase, Blocks Replication of the SARS-CoV-2 and HCoV-NL63 Human Coronaviruses In Vitro Nathan E. Stone, Sierra A. Jaramillo, Ashley N. Jones, Adam J. Vazquez, Madison Martz, Lora M. Versluis, et al. (+12)
880 [GO] mBio 2021―Jan―18 SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia John Everett, Pascha Hokama, Aoife M. Roche, Shantan Reddy, Young Hwang, Lyanna Kessler, et al. (+13)
881 [GO] mBio 2021―Jan―18 SARS-CoV-2 Infection Severity Is Linked to Superior Humoral Immunity against the Spike Jenna J. Guthmiller, Olivia Stovicek, Jiaolong Wang, Siriruk Changrob, Lei Li, Peter Halfmann, et al. (+20)
882 [GO] mBio 2021―Jan―18 Engineering a Reliable and Convenient SARS-CoV-2 Replicon System for Analysis of Viral RNA Synthesis and Screening of Antiviral Inhibitors Yuewen Luo, Fei Yu, Mo Zhou, Yang Liu, Baijin Xia, Xiantao Zhang, et al. (+11)
883 [GO] mBio 2021―Jan―18 Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants Alexander Crits-Christoph, Rose S. Kantor, Matthew R. Olm, Oscar N. Whitney, Basem Al-Shayeb, Yue Clare Lou, et al. (+14)
884 [GO] mBio 2021―Jan―18 Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion Russell Y. Neches, Nikos C. Kyrpides, Christos A. Ouzounis, Diane E. Griffin
885 [GO] Journal of Clinical Microbiology 2021―Jan―15 Precision pandemic preparedness-Improving diagnostics with metagenomics Kumeren N. Govender
886 [GO] Journal of Virology 2021―Jan―14 Non-steroidal anti-inflammatory drugs dampen the cytokine and antibody response to SARS-CoV-2 infection Jennifer S. Chen, Mia Madel Alfajaro, Ryan D. Chow, Jin Wei, Renata B. Filler, Stephanie C. Eisenbarth, Craig B. Wilen
887 [GO] Journal of Clinical Microbiology 2021―Jan―14 Correlation of SARS-CoV-2 nucleocapsid antigen and RNA concentrations in nasopharyngeal samples from children and adults using an ultrasensitive and quantitative antigen assay Nira R. Pollock, Timothy J. Savage, Hanna Wardell, Rose A. Lee, Anu Mathew, Martin Stengelin, George B. Sigal
888 [GO] Journal of Clinical Microbiology 2021―Jan―13 Evaluation of the Xpert Xpress SARS-CoV-2/Flu/RSV assay for simultaneous detection of SARS-CoV-2, Influenza A/B and Respiratory Syncytial Viruses in nasopharyngeal specimens Eddie Chi-man Leung, Viola Chi-ying Chow, May Kin-ping Lee, Kevin Pui-san Tang, Daniel Kwok-cheung Li, Raymond Wai-man Lai
889 [GO] Clinical Microbiology Reviews 2021―Jan―12 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2): a Systemic Infection Aleksandra Synowiec, Artur Szczepański, Emilia Barreto-Duran, Laurensius Kevin Lie, Krzysztof Pyrc
890 [GO] Journal of Virology 2021―Jan―12 Generation and Characterization of recombinant SARS-CoV-2 expressing reporter genes Kevin Chiem, Desarey Morales Vasquez, Jun-Gyu Park, Roy Neal Platt, Tim Anderson, Mark R. Walter, et al. (+3)
891 [GO] mBio 2021―Jan―11 Do an Altered Gut Microbiota and an Associated Leaky Gut Affect COVID-19 Severity? Heenam Stanley Kim, Maria Gloria Dominguez Bello
892 [GO] mBio 2021―Jan―11 Pneumococcal Conjugate Vaccine Protection against Coronavirus-Associated Pneumonia Hospitalization in Children Living with and without HIV Marta C. Nunes, Clare L. Cutland, Keith P. Klugman, Shabir A. Madhi, Julian Parkhill
893 [GO] Journal of Clinical Microbiology 2021―Jan―11 Performance characteristics of the VIDAS® SARS-COV-2 IgM and IgG serological assays Nathalie Renard, Soizic Daniel, Nadège Cayet, Matthieu Pecquet, Frédérique Raymond, Sylvie Pons, et al. (+9)
894 [GO] Journal of Clinical Microbiology 2021―Jan―11 Performance of saliva specimens for the molecular detection of SARS-CoV-2 in the community setting: does sample collection method matter? Marta Fernández-González, Vanesa Agulló, Alba de la Rica, Ana Infante, Mar Carvajal, José Alberto García, et al. (+7)
895 [GO] Journal of Virology 2021―Jan―07 COVID-19 vaccine candidates based on modified vaccinia virus Ankara expressing the SARS-CoV-2 spike induce robust T- and B-cell immune responses and full efficacy in mice Juan García-Arriaza, Urtzi Garaigorta, Patricia Pérez, Adrián Lázaro-Frías, Carmen Zamora, Pablo Gastaminza, et al. (+5)
896 [GO] Microbiology Resource Announcements 2021―Jan―06 Genome Sequences of Two GH Clade SARS-CoV-2 Strains Isolated from Patients with COVID-19 in South Korea Minwoo Kim, Youn-Jung Lee, Jae Sun Yoon, Jin Young Ahn, Jung Ho Kim, Jun Yong Choi, et al. (+2)
897 [GO] Microbiology Resource Announcements 2021―Jan―06 Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing Piroon Jenjaroenpun, Visanu Wanchai, Kikumi D. Ono-Moore, Jennifer Laudadio, Laura P. James, Sean H. Adams, et al. (+5)
898 [GO] Microbiology Resource Announcements 2021―Jan―06 Mutation Profile of SARS-CoV-2 Genome Sequences Originating from Eight Israeli Patient Isolates Galia Zaide, Inbar Cohen-Gihon, Ofir Israeli, Dana Stein, Ohad Shifman, Shay Weiss, et al. (+5)
899 [GO] mSphere 2021―Jan―05 Monitoring COVID-19 Transmission Risks by Quantitative Real-Time PCR Tracing of Droplets in Hospital and Living Environments Andrea Piana, Maria Eugenia Colucci, Federica Valeriani, Adriano Marcolongo, Giovanni Sotgiu, Cesira Pasquarella, et al. (+14)
900 [GO] Journal of Clinical Microbiology 2020―Dec―24 The Importance and Challenges of Identifying SARS-CoV-2 Reinfections Ahmed Babiker, Charles Marvil, Jesse J. Waggoner, Matthew Collins, Anne Piantadosi
901 [GO] Journal of Virology 2020―Dec―22 Coronavirus Endoribonuclease Ensures Efficient Viral Replication and Prevents Protein Kinase R Activation Jing Zhao, Lu Sun, Ye Zhao, Delan Feng, Jinlong Cheng, Guozhong Zhang
902 [GO] Journal of Virology 2020―Dec―22 Identification of SARS-CoV-2 Nucleocapsid and Spike T-cell Epitopes for Assessing T-cell Immunity Eunok Lee, Kerrie Sandgren, Gabriel Duette, Vicki V. Stylianou, Rajiv Khanna, John-Sebastian Eden, et al. (+4)
903 [GO] mBio 2020―Dec―21 Designing the Next Generation of Vaccines: Relevance for Future Pandemics Jorge Domínguez-Andrés, Reinout van Crevel, Maziar Divangahi, Mihai G. Netea, Vinayaka R. Prasad
904 [GO] Journal of Clinical Microbiology 2020―Dec―15 Immunologic testing for SARS-CoV-2 infection from the antigen perspective Dandan Li, Jinming Li
905 [GO] Journal of Virology 2020―Dec―14 Spike glycoprotein and host cell determinants of SARS-CoV-2 entry and cytopathic effects Hanh T. Nguyen, Shijian Zhang, Qian Wang, Saumya Anang, Jia Wang, Haitao Ding, et al. (+2)
906 [GO] mBio 2020―Dec―14 Stapled Peptides Based on Human Angiotensin-Converting Enzyme 2 (ACE2) Potently Inhibit SARS-CoV-2 Infection In Vitro Francesca Curreli, Sofia M. B. Victor, Shahad Ahmed, Aleksandra Drelich, Xiaohe Tong, Chien-Te K. Tseng, et al. (+3)
907 [GO] mBio 2020―Dec―14 Recombinant ACE2 Expression Is Required for SARS-CoV-2 To Infect Primary Human Endothelial Cells and Induce Inflammatory and Procoagulative Responses Jonas Nascimento Conde, William R. Schutt, Elena E. Gorbunova, Erich R. Mackow, John T. Patton
908 [GO] Journal of Clinical Microbiology 2020―Dec―10 Variable sensitivity in molecular detection of SARS-CoV-2 in European Expert Laboratories: External Quality Assessment, June - July 2020 Carlo Fischer, Ramona Mögling, Angeliki Melidou, Arne Kühne, Edmilson F. Oliveira-Filho, Thorsten Wolff, et al. (+6)
909 [GO] Journal of Clinical Microbiology 2020―Dec―10 Multi-center Evaluation of the Cepheid Xpert® Xpress SARS-CoV-2/Flu/RSV Test Heba H. Mostafa, Karen C. Carroll, Rachel Hicken, Gregory J. Berry, Ryhana Manji, Elizabeth Smith, et al. (+10)
910 [GO] Journal of Clinical Microbiology 2020―Dec―09 A Fast and Accessible Method for the Isolation of RNA, DNA, and Protein to Facilitate the Detection of SARS-CoV-2 Jose Carlos Ponce-Rojas, Michael S. Costello, Duncan A. Proctor, Kenneth S. Kosik, Maxwell Z. Wilson, Carolina Arias, Diego Acosta-Alvear
911 [GO] Antimicrobial Agents and Chemotherapy 2020―Dec―08 Favipiravir and the Need for Early Ambulatory Treatment of COVID-19 Tony M. Korman
912 [GO] Antimicrobial Agents and Chemotherapy 2020―Dec―08 Evidence-Based Guidelines Should Be Used to Inform COVID-19 Management Thomas L. Holland
913 [GO] Journal of Clinical Microbiology 2020―Dec―07 Frequency of Positive Aspergillus Tests in COVID-19 Patients in Comparison to Other Patients with Pulmonary Infections Admitted to the ICU Erlangga Yusuf, Alieke Vonk, Johannes P.C. van den Akker, Lonneke Bode, Gregorius J. Sips, Bart J. A. Rijnders, et al. (+5)
914 [GO] Applied Microbiology 2020―Dec―05 Detection of Coronavirus 229E Antibody by Indirect Hemagglutination Harold S. Kaye, Suat Bee Ong, Walter R. Dowdle
915 [GO] Applied Microbiology 2020―Dec―05 Detection of Coronavirus 229E Antibody by Indirect Hemagglutination Harold S. Kaye, Suat Bee Ong, Walter R. Dowdle
916 [GO] Journal of Virology 2020―Dec―03 Identification of HLA-A*02:01-restricted candidate epitopes derived from the non-structural polyprotein 1a of SARS-CoV-2 that may be natural targets of CD8+ T cell recognition in vivo Akira Takagi, Masanori Matsui
917 [GO] Journal of Clinical Microbiology 2020―Dec―03 Comparison of ZMAC and MARC-145 Cell Lines for Improving Porcine Reproductive and Respiratory Syndrome Virus Isolation from Clinical Samples Wannarat Yim-im, Haiyan Huang, Jie Park, Chong Wang, Gabriela Calzada, Phillip Gauger, et al. (+3)
918 [GO] Journal of Virology 2020―Dec―02 The global and local distribution of RNA structure throughout the SARS-CoV-2 genome Rafael de Cesaris Araujo Tavares, Gandhar Mahadeshwar, Han Wan, Nicholas C. Huston, Anna Marie Pyle
919 [GO] Journal of Clinical Microbiology 2020―Dec―02 Pooled Saliva Specimens for SARS-CoV-2 Testing Bidisha Barat, Sanchita Das, Valeria De Giorgi, David K. Henderson, Stacy Kopka, Anna F. Lau, et al. (+9)
920 [GO] Journal of Virology 2020―Dec―01 A Versatile Reporter System to Monitor Virus Infected Cells and Its Application to Dengue Virus and SARS-CoV-2 Felix Pahmeier, Christopher J. Neufeldt, Berati Cerikan, Vibhu Prasad, Costantin Pape, Vibor Laketa, et al. (+3)
921 [GO] mSphere 2020―Dec―01 Conserved Genomic Terminals of SARS-CoV-2 as Coevolving Functional Elements and Potential Therapeutic Targets Agnes P. Chan, Yongwook Choi, Nicholas J. Schork, Benhur Lee
922 [GO] mSystems 2020―Dec―01 Coordinating and Assisting Research at the SARS-CoV-2/Microbiome Nexus
923 [GO] Journal of Virology 2020―Dec―01 Vaccines That Reduce Viral Shedding Do Not Prevent Transmission of H1N1 Pandemic 2009 Swine Influenza a Virus Infection to Unvaccinated Pigs Helen E. Everett, Pauline M. van Diemen, Mario Aramouni, Andrew Ramsay, Vivien J. Coward, Vincent Pavot, et al. (+9)
924 [GO] Journal of Clinical Microbiology 2020―Nov―26 Comparison of Quidel Sofia SARS FIA Test to Hologic Aptima SARS-CoV-2 TMA Test for Diagnosis of COVID-19 in Symptomatic Outpatients Eric T. Beck, Wendy Paar, Lara Fojut, Jordan Serwe, Renee R. Jahnke
925 [GO] Journal of Clinical Microbiology 2020―Nov―26 Inference of Active Viral Replication in Cases with Sustained Positive RT-PCRs for SARS-CoV-2 Cristina Rodríguez-Grande, Javier Adán-Jiménez, Pilar Catalán, Luis Alcalá, Agustín Estévez, Patricia Muñoz, et al. (+2)
926 [GO] Journal of Clinical Microbiology 2020―Nov―26 Clinical performance of the point-of-care cobas Liat for detection of SARS-CoV-2 in 20 minutes: A multicenter study Glen Hansen, Jamie Marino, Zi-Xuan Wang, Kathleen G. Beavis, John Rodrigo, Kylie Labog, et al. (+8)
927 [GO] Journal of Clinical Microbiology 2020―Nov―26 Saliva is a Promising Alternative Specimen for the Detection of SARS-CoV-2 in Children and Adults Rebecca Yee, Thao Truong, Pia S. Pannaraj, Natalie Eubanks, Emily Gai, Jaycee Jumarang, et al. (+4)
928 [GO] Journal of Clinical Microbiology 2020―Nov―26 Evaluating Ten Commercially-Available SARS-CoV-2 Rapid Serological Tests Using the STARD (Standards for Reporting of Diagnostic Accuracy Studies) Method. Laurent Dortet, Jean-Baptiste Ronat, Christelle Vauloup-Fellous, Céline Langendorf, David-Alexis Mendels, Cécile Emeraud, et al. (+12)
929 [GO] Journal of Clinical Microbiology 2020―Nov―25 Detection of SARS-CoV-2 antibodies in oral fluid obtained using a rapid collection device Melanie A. MacMullan, Prithivi Chellamuthu, Aubree Mades, Sudipta Das, Fred Turner, Vladimir I. Slepnev, Albina Ibrayeva
930 [GO] Journal of Virology 2020―Nov―24 Structure of nonstructural protein 1 from SARS-CoV-2. Lauren K. Clark, Todd J. Green, Chad M. Petit
931 [GO] mBio 2020―Nov―23 Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients Heba H. Mostafa, John A. Fissel, Brian Fanelli, Yehudit Bergman, Victoria Gniazdowski, Manoj Dadlani, et al. (+5)
932 [GO] mBio 2020―Nov―23 Analysis of Measles-Mumps-Rubella (MMR) Titers of Recovered COVID-19 Patients Jeffrey E. Gold, William H. Baumgartl, Ramazan A. Okyay, Warren E. Licht, Paul L. Fidel, Mairi C. Noverr, et al. (+5)
933 [GO] Journal of Clinical Microbiology 2020―Nov―23 Performance of the COVID-19 SEROSpeed IgM/IgG Rapid Test, an immunochromatographic assay for the diagnosis of SARS-CoV-2 infection: a multicenter European study. Mario Plebani, Marijo Parčina, Issam Bechri, Gianguglielmo Zehender, Vedrana Terkeš, Balqis Abdel Hafith, et al. (+10)
934 [GO] mBio 2020―Nov―23 After COVID-19 We Will Need a New Research System. We Need To Start Planning Now Stefano Bertuzzi, Victor J. DiRita
935 [GO] Journal of Microbiology and Biology Education 2020―Nov―20 COVID-19 and the Central Dogma: an Activity To Improve Student Learning and Engagement † Carli Roush, Alita R. Burmeister
936 [GO] Journal of Virology 2020―Nov―20 HTCC as a Polymeric Inhibitor of SARS-CoV-2 and MERS-CoV Aleksandra Milewska, Ying Chi, Artur Szczepanski, Emilia Barreto-Duran, Agnieszka Dabrowska, Pawel Botwina, et al. (+14)
937 [GO] Journal of Clinical Microbiology 2020―Nov―19 Evaluation of Serological SARS-CoV-2 Lateral Flow Assays for Rapid Point of Care Testing Steven E. Conklin, Kathryn Martin, Yukari C Manabe, Haley A Schmidt, Jernelle Miller, Morgan Keruly, et al. (+16)
938 [GO] mBio 2020―Nov―16 Defensive Properties of Mucin Glycoproteins during Respiratory Infections-Relevance for SARS-CoV-2 Maitrayee Chatterjee, Jos P. M. van Putten, Karin Strijbis, Danielle A. Garsin
939 [GO] Journal of Clinical Microbiology 2020―Nov―13 Extraction-free methods for the detection of SARS-CoV-2 by RT-PCR: a comparison with the Cepheid Xpert Xpress SARS-CoV-2 assay across two medical centers Andrew Cameron, Nicole Pecora, Matthew Pettengill
940 [GO] Journal of Clinical Microbiology 2020―Nov―12 Too slow, less dough for SARS-CoV-2 tests? A Micro-Comic Strip Alexander J. McAdam
941 [GO] Journal of Virology 2020―Nov―11 Effective Inhibition of SARS-CoV-2 Entry by Heparin and Enoxaparin Derivatives Ritesh Tandon, Joshua S. Sharp, Fuming Zhang, Vitor H. Pomin, Nicole M. Ashpole, Dipanwita Mitra, et al. (+5)
942 [GO] mSphere 2020―Nov―10 Daily Viral Kinetics and Innate and Adaptive Immune Response Assessment in COVID-19: a Case Series Pauline Vetter, Christiane S. Eberhardt, Benjamin Meyer, Paola Andrea Martinez Murillo, Giulia Torriani, Fiona Pigny, et al. (+13)
943 [GO] mSphere 2020―Nov―10 A Genome Epidemiological Study of SARS-CoV-2 Introduction into Japan Tsuyoshi Sekizuka, Kentaro Itokawa, Masanori Hashino, Tetsuro Kawano-Sugaya, Rina Tanaka, Koji Yatsu, et al. (+20)
944 [GO] mBio 2020―Nov―09 Erratum for Westmeier et al., “Impaired Cytotoxic CD8+ T Cell Response in Elderly COVID-19 Patients” Jaana Westmeier, Krystallenia Paniskaki, Zehra Karaköse, Tanja Werner, Kathrin Sutter, Sebastian Dolff, et al. (+14)
945 [GO] Journal of Virology 2020―Nov―09 The SARS-CoV-2 conserved macrodomain is a mono-ADP-ribosylhydrolase Yousef M.O. Alhammad, Maithri M. Kashipathy, Anuradha Roy, Jean-Philippe Gagné, Peter McDonald, Philip Gao, et al. (+7)
946 [GO] mBio 2020―Nov―09 Long-Term Modeling of SARS-CoV-2 Infection of In Vitro Cultured Polarized Human Airway Epithelium Siyuan Hao, Kang Ning, Cagla Aksu Kuz, Kai Vorhies, Ziying Yan, Jianming Qiu, Xiang-Jin Meng
947 [GO] Applied and Environmental Microbiology 2020―Nov―09 Airborne disinfection by dry fogging efficiently inactivates SARS-CoV-2, mycobacteria and bacterial spores and shows the limits of commercial spore carriers for process control Jan Schinköthe, Hendrik A. Scheinemann, Sandra Diederich, Holger Freese, Michael Eschbaumer, Jens P. Teifke, Sven Reiche
948 [GO] Antimicrobial Agents and Chemotherapy 2020―Nov―03 New Perspectives on Antimicrobial Agents: Remdesivir Treatment for COVID-19 Muneerah M. Aleissa, Emily A. Silverman, Luisa M. Paredes Acosta, Cameron T. Nutt, Aaron G. Richterman, Francisco M. Marty
949 [GO] Journal of Clinical Microbiology 2020―Nov―03 Evaluation of the Panbio Covid-19 rapid antigen detection test device for the screening of patients with Covid-19 Florence Fenollar, Amar Bouam, Mehdi Ballouche, Léa Fuster, Elsa Prudent, Philippe Colson, et al. (+5)
950 [GO] Journal of Virology 2020―Nov―03 Middle East Respiratory Syndrome Coronavirus Gene 5 Modulates Pathogenesis in Mice Javier Gutierrez-Alvarez, Li Wang, Raul Fernandez-Delgado, Kun Li, Paul B. McCray, Stanley Perlman, et al. (+3)
951 [GO] Journal of Virology 2020―Nov―03 The Decision to Publish Gutierrez-Alvarez et al., “Middle East Respiratory Syndrome Coronavirus Gene 5 Modulates Pathogenesis in Mice” Mark Heise, Terence S. Dermody, Arturo Casadevall, Rozanne M Sandri-Goldin, Patrick D. Schloss
952 [GO] Journal of Clinical Microbiology 2020―Nov―03 Comparative performance of five commercially available serologic assays to detect antibodies to SARS-CoV-2 and identify individuals with high neutralizing titers Eshan U. Patel, Evan M. Bloch, William Clarke, Yu-Hsiang Hsieh, Denali Boon, Yolanda Eby, et al. (+20)
953 [GO] Journal of Virology 2020―Nov―03 Changes in SARS-CoV-2 Spike versus Nucleoprotein Antibody Responses Impact the Estimates of Infections in Population-Based Seroprevalence Studies Craig Fenwick, Antony Croxatto, Alix T. Coste, Florence Pojer, Cyril André, Céline Pellaton, et al. (+11)
954 [GO] Journal of Clinical Microbiology 2020―Nov―03 Evaluation of a SARS-CoV-2 surrogate virus neutralization test for detection of antibody in human, canine, cat and hamster sera. Ranawaka A. P. M. Perera, Ronald Ko, Owen T. Y. Tsang, David S. C. Hui, Mike Y. M. Kwan, Christopher J Brackman, et al. (+13)
955 [GO] Journal of Clinical Microbiology 2020―Nov―03 Approach to assessment of new swabs and viral transport media for SARS-CoV-2 testing Kerstin Locher, Billie Velapatino, Mélissa Caza, Lisa Li, Charlene Porter, Marthe Charles
956 [GO] Journal of Clinical Microbiology 2020―Nov―03 A multiplex microsphere IgG assay for SARS-CoV-2 using ACE2-mediated inhibition as a surrogate for neutralization Andrew Cameron, Claire A. Porterfield, Larry D. Byron, Jiong Wang, Zachary Pearson, Jessica L. Bohrhunter, et al. (+8)
957 [GO] mSystems 2020―Nov―02 Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients Rodolfo A. Salido, Sydney C. Morgan, Maria I. Rojas, Celestine G. Magallanes, Clarisse Marotz, Peter DeHoff, et al. (+9)
958 [GO] mBio 2020―Nov―02 Pervasive RNA Secondary Structure in the Genomes of SARS-CoV-2 and Other Coronaviruses P. Simmonds, Diane E. Griffin
959 [GO] Journal of Clinical Microbiology 2020―Nov―02 Highly sensitive and specific multiplex antibody assays to quantify immunoglobulins M, A and G against SARS-CoV-2 antigens Carlota Dobaño, Marta Vidal, Rebeca Santano, Alfons Jiménez, Jordi Chi, Diana Barrios, et al. (+14)
960 [GO] mBio 2020―Nov―02 Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area S. Wesley Long, Randall J. Olsen, Paul A. Christensen, David W. Bernard, James J. Davis, Maulik Shukla, et al. (+20)
961 [GO] Antimicrobial Agents and Chemotherapy 2020―Oct―30 Repurposing Nucleoside Analogs for Human Coronaviruses Keivan Zandi, Franck Amblard, Katie Musall, Jessica Downs-Bowen, Ruby Kleinbard, Adrian Oo, et al. (+7)
962 [GO] Journal of Virology 2020―Oct―30 A FOUNDER EFFECT LED EARLY SARS-COV-2 TRANSMISSION IN SPAIN Francisco Díez-Fuertes, María Iglesias-Caballero, Javier García Pérez, Sara Monzón, Pilar Jiménez, Sarai Varona, et al. (+9)
963 [GO] Antimicrobial Agents and Chemotherapy 2020―Oct―29 Development of a simple in vitro assay to identify and evaluate nucleotide analogs against SARS-CoV-2 RNA-dependent RNA polymerase Gaofei Lu, Xi Zhang, Weinan Zheng, Jialei Sun, Lan Hua, Lan Xu, et al. (+3)
964 [GO] Journal of Virology 2020―Oct―29 Detection and Characterization of Swine-origin Influenza A(H1N1) Pandemic 2009 Viruses in Humans Following Zoonotic Transmission Peter W. Cook, Thomas Stark, Joyce Jones, Rebecca Kondor, Natosha Zanders, Jeffrey Benfer, et al. (+16)
965 [GO] Clinical Microbiology Reviews 2020―Oct―27 SARS-CoV-2 and Health Care Worker Protection in Low-Risk Settings: a Review of Modes of Transmission and a Novel Airborne Model Involving Inhalable Particles X. Sophie Zhang, Caroline Duchaine
966 [GO] Journal of Clinical Microbiology 2020―Oct―27 Comparison of the Clinical Performance of the Abbott Alinity IgG, Abbott Architect IgM, and Roche Elecsys Total SARS-CoV-2 Antibody Assays Kellisha Harley, Ian Gunsolus
967 [GO] mBio 2020―Oct―26 The Interaction of Natural and Vaccine-Induced Immunity with Social Distancing Predicts the Evolution of the COVID-19 Pandemic Michael F. Good, Michael T. Hawkes, Alan Sher
968 [GO] Journal of Clinical Microbiology 2020―Oct―23 Comparison of upper respiratory viral load distributions in asymptomatic and symptomatic children diagnosed with SARS-CoV-2 infection in pediatric hospital testing programs Larry K. Kociolek, William J. Muller, Rebecca Yee, Jennifer Dien Bard, Cameron A. Brown, Paula Revell, et al. (+18)
969 [GO] Journal of Clinical Microbiology 2020―Oct―22 COVID-19 associated invasive aspergillosis: data from the UK National Mycology Reference Laboratory Andrew M. Borman, Michael D. Palmer, Mark Fraser, Zoe Patterson, Ciara Mann, Debra Oliver, et al. (+8)
970 [GO] Journal of Clinical Microbiology 2020―Oct―22 Combined Self-collected Anterior Nasal and Oropharyngeal Specimens versus Provider-collected Nasopharyngeal Swabs for the Detection of SARS-CoV-2 S. M. Shakir, A. P. Barker, D. R. Hillyard, N Gilmore, J. W. Barrett, R. R. Orlandi, K. E. Hanson
971 [GO] Microbiology Resource Announcements 2020―Oct―21 Coding-Complete Genome Sequences of 23 SARS-CoV-2 Samples from the Philippines John Mark Velasco, Piyawan Chinnawirotpisan, Khajohn Joonlasak, Wudtichai Manasatienkij, Angkana Huang, Maria Theresa Valderama, et al. (+11)
972 [GO] mSphere 2020―Oct―20 Effectiveness of Face Masks in Preventing Airborne Transmission of SARS-CoV-2 Hiroshi Ueki, Yuri Furusawa, Kiyoko Iwatsuki-Horimoto, Masaki Imai, Hiroki Kabata, Hidekazu Nishimura, et al. (+2)
973 [GO] Journal of Clinical Microbiology 2020―Oct―19 Metagenomic sequencing to detect respiratory viruses in persons under investigation for COVID-19 Ahmed Babiker, Heath L. Bradley, Victoria D. Stittleburg, Jessica M. Ingersoll, Autum Key, Colleen S. Kraft, et al. (+2)
974 [GO] mBio 2020―Oct―19 Accurate Diagnosis of COVID-19 by a Novel Immunogenic Secreted SARS-CoV-2 orf8 Protein Xiaohui Wang, Joy-Yan Lam, Wan-Man Wong, Chun-Kit Yuen, Jian-Piao Cai, Shannon Wing-Ngor Au, et al. (+5)
975 [GO] Journal of Clinical Microbiology 2020―Oct―19 COVID-19 serology at population scale: SARS-CoV-2-specific antibody responses in saliva Nora Pisanic, Pranay R. Randad, Kate Kruczynski, Yukari C. Manabe, David L. Thomas, Andrew Pekosz, et al. (+15)
976 [GO] mBio 2020―Oct―19 Inhibition of Coronavirus Entry In Vitro and Ex Vivo by a Lipid-Conjugated Peptide Derived from the SARS-CoV-2 Spike Glycoprotein HRC Domain Victor K. Outlaw, Francesca T. Bovier, Megan C. Mears, Maria N. Cajimat, Yun Zhu, Michelle J. Lin, et al. (+11)
977 [GO] mBio 2020―Oct―19 SARS-CoV-2 Is Restricted by Zinc Finger Antiviral Protein despite Preadaptation to the Low-CpG Environment in Humans Rayhane Nchioua, Dorota Kmiec, Janis A. Müller, Carina Conzelmann, Rüdiger Groß, Chad M. Swanson, et al. (+8)
978 [GO] mBio 2020―Oct―19 Decline of Humoral Responses against SARS-CoV-2 Spike in Convalescent Individuals Guillaume Beaudoin-Bussières, Annemarie Laumaea, Sai Priya Anand, Jérémie Prévost, Romain Gasser, Guillaume Goyette, et al. (+15)
979 [GO] Journal of Clinical Microbiology 2020―Oct―19 Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by RT-PCR. Manu Vanaerschot, Sabrina A. Mann, James T. Webber, Jack Kamm, Sidney M. Bell, John Bell, et al. (+21)
980 [GO] Journal of Virology 2020―Oct―19 Country-level diversity of the HIV-1 pandemic between 1990 and 2015. Joris Hemelaar, Shanghavie Loganathan, Ramyiadarsini Elangovan, Jason Yun, Leslie Dickson-Tetteh, Shona Kirtley
981 [GO] Journal of Virology 2020―Oct―15 The inhaled steroid ciclesonide blocks SARS-CoV-2 RNA replication by targeting the viral replication-transcription complex in cultured cells Shutoku Matsuyama, Miyuki Kawase, Naganori Nao, Kazuya Shirato, Makoto Ujike, Wataru Kamitani, et al. (+2)
982 [GO] Journal of Clinical Microbiology 2020―Oct―14 Performance evaluation of the SAMBA II SARS-CoV-2 Test for point-of-care detection of SARS-CoV-2 Sonny M Assennato, Allyson V Ritchie, Cesar Nadala, Neha Goel, Cuijuan Tie, Lourdes M Nadala, et al. (+5)
983 [GO] Clinical Microbiology Reviews 2020―Oct―13 Remdesivir against COVID-19 and Other Viral Diseases Jakob J. Malin, Isabelle Suárez, Vanessa Priesner, Gerd Fätkenheuer, Jan Rybniker
984 [GO] mSphere 2020―Oct―13 Descriptive, Retrospective Study of the Clinical Characteristics of Asymptomatic COVID-19 Patients Huan Han, Zaichao Xu, Xiaoming Cheng, Youquan Zhong, Li Yuan, Fubing Wang, et al. (+6)
985 [GO] Clinical Microbiology Reviews 2020―Oct―13 Immunopathogenesis of Coronavirus-Induced Acute Respiratory Distress Syndrome (ARDS): Potential Infection-Associated Hemophagocytic Lymphohistiocytosis Chao Quan, Caiyan Li, Han Ma, Yisha Li, Huali Zhang
986 [GO] Journal of Clinical Microbiology 2020―Oct―13 Sensitive recovery of complete SARS-CoV-2 genomes from clinical samples using Swift Biosciences' SARS-CoV-2 multiplex amplicon sequencing panel Amin Addetia, Michelle J. Lin, Vikas Peddu, Pavitra Roychoudhury, Keith R. Jerome, Alexander L. Greninger
987 [GO] mBio 2020―Oct―12 From People to Panthera: Natural SARS-CoV-2 Infection in Tigers and Lions at the Bronx Zoo Denise McAloose, Melissa Laverack, Leyi Wang, Mary Lea Killian, Leonardo C. Caserta, Fangfeng Yuan, et al. (+32)
988 [GO] mBio 2020―Oct―12 Pandemic Legion History More Complex than Previously Thought Jean-Nicolas Tournier, Vinayaka R. Prasad
989 [GO] Microbiology Resource Announcements 2020―Oct―07 Metagenomics of Wastewater Influent from Southern California Wastewater Treatment Facilities in the Era of COVID-19 Jason A. Rothman, Theresa B. Loveless, Madison L. Griffith, Joshua A. Steele, John F. Griffith, Katrine L. Whiteson, Simon Roux
990 [GO] Microbiology Resource Announcements 2020―Oct―07 Metagenome of a Bronchoalveolar Lavage Fluid Sample from a Confirmed COVID-19 Case in Quito, Ecuador, Obtained Using Oxford Nanopore MinION Technology Sully Márquez, Belén Prado-Vivar, Juan José Guadalupe, Bernardo Gutierrez, Mónica Becerra-Wong, Manuel Jibaja, et al. (+8)
991 [GO] Journal of Clinical Microbiology 2020―Oct―07 When Should Asymptomatic Persons Be Tested for COVID-19? Audrey N. Schuetz, Peera Hemarajata, Ninad Mehta, Sheldon Campbell, Stephanie Mitchell, Elizabeth Palavecino, et al. (+2)
992 [GO] Journal of Clinical Microbiology 2020―Oct―07 Clinical evaluation of BD Veritor SARS-CoV-2 point-of-care test performance compared to PCR-based testing and versus the Sofia 2 SARS Antigen point-of-care test. Stephen Young, Stephanie N. Taylor, Catherine L. Cammarata, Katey G. Varnado, Celine Roger-Dalbert, Amanda Montano, et al. (+9)
993 [GO] mSphere 2020―Oct―06 Epidemiological Investigation and Prevention Control Analysis of the Longitudinal Distribution of COVID-19 in Henan Province, China Xianguang Yang, Xuelin Chen, Cuihong Ding, Zhibo Bai, Jingyi Zhu, Gege Sun, et al. (+2)
994 [GO] mSystems 2020―Oct―06 End-to-End Protocol for the Detection of SARS-CoV-2 from Built Environments Ceth W. Parker, Nitin Singh, Scott Tighe, Adriana Blachowicz, Jason M. Wood, Arman Seuylemezian, et al. (+12)
995 [GO] Journal of Clinical Microbiology 2020―Oct―06 Evaluation of Three Commercial SARS-CoV-2 Serologic Assays and their Performance in Two-Test Algorithms Sarah E. Turbett, Melis Anahtar, Anand S. Dighe, Wilfredo Garcia Beltran, Tyler Miller, Hannah Scott, et al. (+8)
996 [GO] Journal of Clinical Microbiology 2020―Oct―06 Application, Verification and Implementation of SARS-CoV-2 Serologic Assays with Emergency Use Authorization Elitza S. Theel, Marc Roger Couturier, Laura Filkins, Elizabeth Palavecino, Stephanie Mitchell, Sheldon Campbell, et al. (+6)
997 [GO] Journal of Virology 2020―Oct―01 Single-cell RNA sequencing reveals the diversity of the immunological landscape following CNS infection by a murine coronavirus Amber R. Syage, H. Atakan Ekiz, Dominic D. Skinner, Colleen Stone, Ryan M. O'Connell, Thomas E. Lane
998 [GO] Journal of Virology 2020―Sep―30 Interferon-induced transmembrane protein 3 is a virus-associated protein which suppresses porcine reproductive and respiratory syndrome virus replication by blocking viral membrane fusion Angke Zhang, Hong Duan, Huijun Zhao, Huancheng Liao, Yongkun Du, Liangliang Li, et al. (+6)
999 [GO] mBio 2020―Sep―28 Antiviral Drug Discovery To Address the COVID-19 Pandemic Douglas D. Richman, Michael S. Diamond
1000 [GO] Journal of Virology 2020―Sep―28 Correction for Hu et al., “The Severe Acute Respiratory Syndrome Coronavirus Nucleocapsid Inhibits Type I Interferon Production by Interfering with TRIM25-Mediated RIG-I Ubiquitination” Yong Hu, Wei Li, Ting Gao, Yan Cui, Yanwen Jin, Ping Li, et al. (+3)
1001 [GO] mBio 2020―Sep―28 Rescue of SARS-CoV-2 from a Single Bacterial Artificial Chromosome Chengjin Ye, Kevin Chiem, Jun-Gyu Park, Fatai Oladunni, Roy Nelson Platt, Tim Anderson, et al. (+4)
1002 [GO] mBio 2020―Sep―28 S Protein-Reactive IgG and Memory B Cell Production after Human SARS-CoV-2 Infection Includes Broad Reactivity to the S2 Subunit Phuong Nguyen-Contant, A. Karim Embong, Preshetha Kanagaiah, Francisco A. Chaves, Hongmei Yang, Angela R. Branche, et al. (+4)
1003 [GO] mBio 2020―Sep―28 SARS-CoV-2 Seroprevalence among a Southern U.S. Population Indicates Limited Asymptomatic Spread under Physical Distancing Measures Amir Barzin, John L. Schmitz, Samuel Rosin, Rameet Sirpal, Martha Almond, Carole Robinette, et al. (+21)
1004 [GO] Antimicrobial Agents and Chemotherapy 2020―Sep―23 Favipiravir and the Need for Early Ambulatory Treatment of SARS-CoV2 Infection (COVID-19) Peter A. McCullough
1005 [GO] Microbiology Resource Announcements 2020―Sep―23 Whole-Genome Sequence of SARS-CoV-2 Isolate Siena-1/2020 Maria Grazia Cusi, David Pinzauti, Claudia Gandolfo, Gabriele Anichini, Gianni Pozzi, Francesco Santoro, Simon Roux
1006 [GO] Microbiology Resource Announcements 2020―Sep―23 Coding-Complete Genome Sequences of Three SARS-CoV-2 Strains from Bangladesh Shahina Akter, Tanjina Akhtar Banu, Barna Goswami, Eshrar Osman, Mohammad Samir Uzzaman, M. Ahashan Habib, et al. (+15)
1007 [GO] Journal of Virology 2020―Sep―23 Cross-Protection against MERS-CoV by Prime-Boost Vaccination Using Viral Spike DNA and Protein Jung-ah Choi, Junghyun Goo, Eunji Yang, Dae-Im Jung, Sena Lee, Semi Rho, et al. (+11)
1008 [GO] Antimicrobial Agents and Chemotherapy 2020―Sep―22 A prospective, randomized, open-label trial of early versus late favipiravir in hospitalized patients with COVID-19 Yohei Doi, Masaya Hibino, Ryota Hase, Michiko Yamamoto, Yu Kasamatsu, Masahiro Hirose, et al. (+39)
1009 [GO] mBio 2020―Sep―21 Impaired Cytotoxic CD8+ T Cell Response in Elderly COVID-19 Patients Jaana Westmeier, Krystallenia Paniskaki, Zehra Karaköse, Tanja Werner, Kathrin Sutter, Sebastian Dolff, et al. (+15)
1010 [GO] mBio 2020―Sep―21 Measles-Mumps-Rubella Vaccine and COVID-19 Relationship Öner Özdemir, Richard E. Lloyd, Michael S. Gilmore
1011 [GO] mBio 2020―Sep―21 Reply to Özdemir, “Measles-Mumps-Rubella Vaccine and COVID-19 Relationship” Paul L. Fidel, Mairi C. Noverr, Michael S. Gilmore
1012 [GO] Journal of Clinical Microbiology 2020―Sep―21 Evaluation and Comparison of the Hologic Aptima SARS-CoV-2 and the CDC 2019 nCoV real-time RT-PCR Diagnostic Panel using a Four-Sample Pooling Approach Stephanie L. Mitchell, Samantha E. Ventura
1013 [GO] mSystems 2020―Sep―21 In Silico Structure-Based Repositioning of Approved Drugs for Spike Glycoprotein S2 Domain Fusion Peptide of SARS-CoV-2: Rationale from Molecular Dynamics and Binding Free Energy Calculations Nishant Shekhar, Phulen Sarma, Manisha Prajapat, Pramod Avti, Hardeep Kaur, Anupam Raja, et al. (+7)
1014 [GO] Journal of Virology 2020―Sep―16 The enzymatic activity of the nsp14 exoribonuclease is critical for replication of MERS-CoV and SARS-CoV-2 Natacha S. Ogando, Jessika C. Zevenhoven-Dobbe, Yvonne van der Meer, Peter J. Bredenbeek, Clara C. Posthuma, Eric J. Snijder
1015 [GO] mSphere 2020―Sep―16 Competitive SARS-CoV-2 Serology Reveals Most Antibodies Targeting the Spike Receptor-Binding Domain Compete for ACE2 Binding James R. Byrnes, Xin X. Zhou, Irene Lui, Susanna K. Elledge, Jeff E. Glasgow, Shion A. Lim, et al. (+7)
1016 [GO] mSphere 2020―Sep―15 The Social Distancing Imposed To Contain COVID-19 Can Affect Our Microbiome: a Double-Edged Sword in Human Health Célia P. F. Domingues, João S. Rebelo, Francisco Dionisio, Ana Botelho, Teresa Nogueira, Susannah Green Tringe
1017 [GO] Journal of Virology 2020―Sep―14 Type I interferon susceptibility distinguishes SARS-CoV-2 from SARS-CoV. Kumari G. Lokugamage, Adam Hage, Maren de Vries, Ana M. Valero-Jimenez, Craig Schindewolf, Meike Dittmann, et al. (+2)
1018 [GO] mBio 2020―Sep―14 Antiviral Activity of Type I, II, and III Interferons Counterbalances ACE2 Inducibility and Restricts SARS-CoV-2 Idoia Busnadiego, Sonja Fernbach, Marie O. Pohl, Umut Karakus, Michael Huber, Alexandra Trkola, et al. (+3)
1019 [GO] Microbiology Resource Announcements 2020―Sep―14 Four SARS-CoV-2 Genome Sequences from Late April in Stockholm, Sweden, Reveal a Rare Mutation in the Spike Protein Tatiany Aparecida Teixeira Soratto, Hamid Darban, Annelie Bjerkner, Maarten Coorens, Jan Albert, Tobias Allander, et al. (+2)
1020 [GO] Journal of Clinical Microbiology 2020―Sep―11 Serological Assays Estimate Highly Variable SARS-CoV-2 Neutralizing Antibody Activity in Recovered COVID19 Patients Larry L. Luchsinger, Brett Ransegnola, Daniel Jin, Frauke Muecksch, Yiska Weisblum, Weili Bao, et al. (+14)
1021 [GO] Journal of Virology 2020―Sep―09 Disruption of Adaptive Immunity Enhances Disease in SARS-CoV-2 Infected Syrian Hamsters Rebecca L. Brocato, Lucia M. Principe, Robert K. Kim, Xiankun Zeng, Janice A. Williams, Yanan Liu, et al. (+8)
1022 [GO] mBio 2020―Sep―07 An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona Jason T. Ladner, Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts, et al. (+18)
1023 [GO] Journal of Clinical Microbiology 2020―Sep―04 A Direct Comparison of Enhanced Saliva to Nasopharyngeal Swab for the Detection of SARS-CoV-2 in Symptomatic Patients Gary W. Procop, Nabin K. Shrestha, Sherilynn Vogel, Kelly Van Sickle, Susan Harrington, Daniel D. Rhoads, et al. (+2)
1024 [GO] mSystems 2020―Sep―01 Low Baseline Pulmonary Levels of Cytotoxic Lymphocytes as a Predisposing Risk Factor for Severe COVID-19 Pascal H. G. Duijf, Paola Flórez de Sessions
1025 [GO] Antimicrobial Agents and Chemotherapy 2020―Sep―01 Removal of remdesivir's metabolite GS-441524 by hemodialysis in a double lung transplant recipient with COVID-19 Minh Patrick Lê, Quentin Le Hingrat, Pierre Jaquet, Paul-Henri Wicky, Vincent Bunel, Laurent Massias, et al. (+6)
1026 [GO] mSphere 2020―Sep―01