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COVID answers in Scientific Journals all over the world

Publishing House: American Society for Microbiology

2351 Results       Page 1

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  original article Journal Date Title Authors All Authors
1 [GO] Microbiology Spectrum 2024―May―15 Analytical validation of a semi-automated methodology for quantitative measurement of SARS-CoV-2 RNA in wastewater collected in northern New England Ashlee A. Robbins, Torrey L. Gallagher, Diana M. Toledo, K. Chase Hershberger, Sabrina M. Salmela, Rachael E. Barney, et al. (+6)
2 [GO] Microbiology Spectrum 2024―May―15 Optimizing SARS-CoV-2 vaccine responses in kidney transplant recipients: an urgent need Yi-Ling Cheng, Shen-Shin Chang, Chiao-Hsuan Chao, Po-Ta Chen, Ya-Lan Lin, Guan-Da Syu, et al. (+5)
3 [GO] Antimicrobial Agents and Chemotherapy 2024―May―14 Inhibition of endocytic uptake of severe acute respiratory syndrome coronavirus 2 and endo-lysosomal acidification by diphenoxylate Jin Soo Shin, Yejin Jang, Dong-Su Kim, Eunhye Jung, Myoung Kyu Lee, Byungil Kim, et al. (+9)
4 [GO] Journal of Virology 2024―May―14 Optimization of quenched fluorescent peptide substrates of SARS-CoV-2 3CL pro main protease (Mpro) from proteomic identification of P6-P6' active site specificity Hugo Cesar Ramos de Jesus, Nestor Solis, Yoan Machado, Isabel Pablos, Peter A. Bell, Reinhild Kappelhoff, et al. (+5)
5 [GO] mBio 2024―May―10 Helminth alleviates COVID-19-related cytokine storm in an IL-9-dependent way Zengguo Cao, Jiaqi Wang, Xiaolei Liu, Yang Liu, Fangxu Li, Mingyuan Liu, et al. (+3)
6 [GO] Journal of Virology 2024―May―06 Human coronavirus OC43 nanobody neutralizes virus and protects mice from infection Amy Adair, Li Lynn Tan, Jackson Feng, Jason Girkin, Nathan Bryant, Mingyang Wang, et al. (+7)
7 [GO] Journal of Virology 2024―May―06 Multiple E3 ligases act as antiviral factors against SARS-CoV-2 via inducing the ubiquitination and degradation of ORF9b Miao Yu, Jie Li, Wenying Gao, Zhaolong Li, Wenyan Zhang, Kanta Subbarao
8 [GO] mSystems 2024―May―03 Association between gut microbiota dysbiosis and poor functional outcomes in acute ischemic stroke patients with COVID-19 infection Jiaying Chen, Xuxuan Gao, Jingru Liang, Qiheng Wu, Linlin Shen, Yifeng Zheng, et al. (+5)
9 [GO] Microbiology Spectrum 2024―Apr―30 SARS-CoV-2 cellular and humoral responses in vaccine-naive individuals during the first two waves of COVID-19 infections in the southern region of The Netherlands: a cross-sectional population-based study D. A. T. Hanssen, K. Arts, W. H. V. Nix, N. N. B. Sweelssen, T. T. J. Welbers, C. de Theije, et al. (+9)
10 [GO] Microbiology Spectrum 2024―Apr―30 Tocilizumab demonstrates superiority in decreasing C-reactive protein levels in hospitalized COVID-19 patients, compared to standard care treatment alone Carolina Calderón-Ochoa, Narek Plamenov-Donchev, Fernando Hernández-Quiñones, Olga Mendoza-López, Luis Carlos Hinojos-Gallardo, Asunción José Longino-Gómez, et al. (+4)
11 [GO] Microbiology Spectrum 2024―Apr―30 An enhanced IL17 and muted type I interferon nasal epithelial cell state characterizes severe COVID-19 with fungal coinfection Carly G. K. Ziegler, Anna H. Owings, Michelle Galeas-Pena, Samuel W. Kazer, Vincent N. Miao, Andrew W. Navia, et al. (+19)
12 [GO] Microbiology Spectrum 2024―Apr―29 Comparative evaluation of RT-PCR and antigen-based rapid diagnostic tests (Ag-RDTs) for SARS-CoV-2 detection: performance, variant specificity, and clinical implications Frank T. Aboagye, Lawrence Annison, Henry Kwadwo Hackman, Maame E. Acquah, Yvonne Ashong, Isaac Owusu-Frimpong, et al. (+5)
13 [GO] Microbiology Resource Announcements 2024―Apr―24 Coding-complete genomes of 18 SARS-CoV-2 Omicron JN.1, JN.1.4, and JN.1.11 sub-lineages in Bangladesh Anika Tahsin, Mahin Hasan, Saikt Rahman, Mohammad Jubair, Mokibul Hassan Afrad, Manjur Hossain Khan, et al. (+13)
14 [GO] Journal of Virology 2024―Apr―23 Harnessing the power of IFN for therapeutic approaches to COVID-19 Elise G. Viox, Steven E. Bosinger, Daniel C. Douek, Gideon Schreiber, Mirko Paiardini, David E. Levy
15 [GO] Journal of Virology 2024―Apr―23 The TRAF3-DYRK1A-RAD54L2 complex maintains ACE2 expression to promote SARS-CoV-2 infection Dexin Mao, Shufeng Liu, An Thanh Phan, Stephanie Renner, Yan Sun, Tony T. Wang, et al. (+2)
16 [GO] Microbiology Spectrum 2024―Apr―23 Spatiotemporal transmission of SARS-CoV-2 lineages during 2020-2021 in Pernambuco-Brazil Lais Ceschini Machado, Filipe Zimmer Dezordi, Gustavo Barbosa de Lima, Raul Emídio de Lima, Lilian Caroliny Amorim Silva, Leandro de Mattos Pereira, et al. (+23)
17 [GO] Microbiology Resource Announcements 2024―Apr―23 Emergence of SARS-CoV-2 Omicron sub-lineage JN.1 in Bangladesh Manjur Hossain Khan Jony, Ahmed Nawsher Alam, Md. Abdullah Omar Nasif, Sharmin Sultana, Rubaid Anwar, Mithun Rudra, et al. (+5)
18 [GO] Microbiology Spectrum 2024―Apr―22 Partial N-gene target failure in the Seegene Allplex SARS-CoV-2 Master Assay as a proxy of SARS-CoV-2 BA.2.86 Maria Beatrice Valli, Maria Letizia Schiavone, Martina Rueca, Giulia Berno, Pietro Giorgio Spezia, Cesare Ernesto Maria Gruber, et al. (+7)
19 [GO] Journal of Virology 2024―Apr―19 Identification of a membrane-associated element (MAE) in the C-terminal region of SARS-CoV-2 nsp6 that is essential for viral replication Yuying Han, Zhenghong Yuan, Zhigang Yi, Tom Gallagher
20 [GO] Journal of Virology 2024―Apr―16 Genes involved in the limited spread of SARS-CoV-2 in the lower respiratory airways of hamsters may be associated with adaptive evolution Kosuke Takada, Yasuko Orba, Yurie Kida, Jiaqi Wu, Chikako Ono, Yoshiharu Matsuura, et al. (+4)
21 [GO] Journal of Virology 2024―Apr―16 Epitopes of an antibody that neutralizes a wide range of SARS-CoV-2 variants in a conserved subdomain 1 of the spike protein Hanako Ishimaru, Mitsuhiro Nishimura, Hideki Shigematsu, Maria Istiqomah Marini, Natsumi Hasegawa, Rei Takamiya, et al. (+3)
22 [GO] mBio 2024―Apr―11 Outpatient treatment with concomitant vaccine-boosted convalescent plasma for patients with immunosuppression and COVID-19 Juan G. Ripoll, Sidna M. Tulledge-Scheitel, Anthony A. Stephenson, Shane Ford, Marsha L. Pike, Ellen K. Gorman, et al. (+19)
23 [GO] Journal of Virology 2024―Apr―09 Efficacy of host cell serine protease inhibitor MM3122 against SARS-CoV-2 for treatment and prevention of COVID-19 Adrianus C. M. Boon, Traci L. Bricker, Ethan J. Fritch, Sarah R. Leist, Kendra Gully, Ralph S. Baric, et al. (+5)
24 [GO] Journal of Virology 2024―Apr―09 Molecular basis of hippopotamus ACE2 binding to SARS-CoV-2 Ruirui Yang, Pu Han, Pengcheng Han, Dedong Li, Runchu Zhao, Sheng Niu, et al. (+5)
25 [GO] mBio 2024―Apr―09 Distinct patterns of SARS-CoV-2 BA.2.87.1 and JN.1 variants in immune evasion, antigenicity, and cell-cell fusion Pei Li, Yajie Liu, Julia N. Faraone, Cheng Chih Hsu, Michelle Chamblee, Yi-Min Zheng, et al. (+11)
26 [GO] mBio 2024―Apr―09 The potentiality of bacteria to drive SARS-CoV-2 mutation Xiangyu Zhang, Shun Li, Mengzhou Xue, Chunfu Zheng
27 [GO] mBio 2024―Apr―08 Inhibition of influenza A virus and SARS-CoV-2 infection or co-infection by griffithsin and griffithsin-based bivalent entry inhibitor Najing Cao, Yanxing Cai, Xin Huang, Hanxiao Jiang, Ziqi Huang, Lixiao Xing, et al. (+4)
28 [GO] Journal of Virology 2024―Apr―04 Inhibition of the RLR signaling pathway by SARS-CoV-2 ORF7b is mediated by MAVS and abrogated by ORF7b-homologous interfering peptide Xiao Xiao, Yanan Fu, Wanling You, Congcong Huang, Feng Zeng, Xinsheng Gu, et al. (+8)
29 [GO] Journal of Virology 2024―Apr―02 A measles-vectored vaccine candidate expressing prefusion-stabilized SARS-CoV-2 spike protein brought to phase I/II clinical trials: protection of African green monkeys from COVID-19 disease Sham Nambulli, Nicolas Escriou, Linda J. Rennick, Matthew J. Demers, Natasha L. Tilston-Lunel, Anita K. McElroy, et al. (+15)
30 [GO] Microbiology Spectrum 2024―Apr―02 Experimental and analytical pipeline for sub-genomic RNA landscape of coronavirus by Nanopore sequencer Bo-Jia Chen, Ching-Hung Lin, Hung-Yi Wu, James J. Cai, Day-Yu Chao, Biao He
31 [GO] mSystems 2024―Apr―02 A novel fast hybrid capture sequencing method for high-efficiency common human coronavirus whole-genome acquisition Zixinrong Meng, Shuo Wang, Liping Yu, Kangchen Zhao, Tao Wu, Xiaojuan Zhu, et al. (+7)
32 [GO] Journal of Virology 2024―Apr―02 A measles-vectored vaccine candidate expressing prefusion-stabilized SARS-CoV-2 spike protein brought to phase I/II clinical trials: candidate selection in a preclinical murine model Jérémy Brunet, Zaineb Choucha, Marion Gransagne, Houda Tabbal, Min-Wen Ku, Julian Buchrieser, et al. (+18)
33 [GO] Microbiology Spectrum 2024―Apr―02 Rapid emergence of transmissible SARS-CoV-2 variants in mild community cases Michael A. Crone, Seran Hakki, Joe Fenn, Jie Zhou, Carolina Rosadas de Oliveira, Kieran J. Madon, et al. (+16)
34 [GO] Microbiology Spectrum 2024―Apr―01 Metagenomic next-generation sequencing of nasopharyngeal microbiota in COVID-19 patients with different disease severities Waleed Aljabr, Iman Dandachi, Basma Abbas, Alaa Karkashan, Ahod Al-Amari, Dayel AlShahrani, Benjamin M. Liu
35 [GO] Antimicrobial Agents and Chemotherapy 2024―Mar―27 Accelerating therapeutics development during a pandemic: population pharmacokinetics of the long-acting antibody combination AZD7442 (tixagevimab/cilgavimab) in the prophylaxis and treatment of COVID-19 Lindsay E. Clegg, Oleg Stepanov, Henning Schmidt, Weifeng Tang, Huixia Zhang, Chris Webber, et al. (+4)
36 [GO] Microbiology Spectrum 2024―Mar―27 SARS-CoV-2 pandemic non-pharmacologic interventions temporally associated with reduced pediatric infections due to Mycoplasma pneumoniae and co-infecting respiratory viruses in Arkansas Bobby L. Boyanton, Rachel A. Frenner, Ashton Ingold, Lilliam Ambroggio, Joshua L. Kennedy, Cecilia M. Thompson
37 [GO] mBio 2024―Mar―26 The human microbiota is a beneficial reservoir for SARS-CoV-2 mutations Birong Cao, Xiaoxi Wang, Wanchao Yin, Zhaobing Gao, Bingqing Xia, Chunfu Zheng
38 [GO] Microbiology Resource Announcements 2024―Mar―25 Coding-complete genomic sequence of a rhinovirus C-32 in a human nasal swab sample that tested false positive in a SARS-CoV-2 antigen test Tracey L. Moquin, Kuttichantran Subramaniam, John A. Lednicky, John J. Dennehy
39 [GO] mBio 2024―Mar―21 Erratum for Karaba et al., “Endemic Human Coronavirus Antibody Levels Are Unchanged after Convalescent or Control Plasma Transfusion for Early Outpatient COVID-19 Treatment” Andrew H. Karaba, Trevor S. Johnston, Evan Beck, Oliver Laeyendecker, Andrea L. Cox, Sabra L. Klein, David J. Sullivan
40 [GO] Applied and Environmental Microbiology 2024―Mar―21 Persistence and free chlorine disinfection of human coronaviruses and their surrogates in water Mengyang Zhang, Michelle Wei Leong, William A. Mitch, Catherine A. Blish, Alexandria Boehm, Christopher A. Elkins
41 [GO] Microbiology Spectrum 2024―Mar―21 Isolation and pathogenicity comparison of two novel natural recombinant porcine reproductive and respiratory syndrome viruses with different recombination patterns in Southwest China Bingzhou Huang, Lishuang Deng, Tong Xu, Zhijie Jian, Siyuan Lai, Yanru Ai, et al. (+3)
42 [GO] Microbiology Resource Announcements 2024―Mar―19 Genome sequencing of severe acute respiratory syndrome COVID-19 EF.1 variant strain obtained from a Moroccan patient Lahcen Ouchari, Mouhssine Hemlali, Hamza Ghammaz, Taha Chouati, Marouane Melloul, Sanaâ Alaoui Amine, et al. (+6)
43 [GO] mBio 2024―Mar―19 ACE-2-like enzymatic activity is associated with immunoglobulin in COVID-19 patients Yufeng Song, Regan Myers, Frances Mehl, Lila Murphy, Bailey Brooks, Jeffrey M. Wilson, et al. (+4)
44 [GO] Journal of Virology 2024―Mar―19 Functional dissection of the spike glycoprotein S1 subunit and identification of cellular cofactors for regulation of swine acute diarrhea syndrome coronavirus entry Yong-Le Yang, Bin Wang, Wentao Li, Hou-Li Cai, Qian-Yu Qian, Yu Qin, et al. (+4)
45 [GO] Journal of Virology 2024―Mar―19 The varying extent of humoral and cellular immune responses to either vector- or RNA-based SARS-CoV-2 vaccines persists for at least 18 months and is independent of infection Franz Mai, Wendy Bergmann, Emil C. Reisinger, Brigitte Müller-Hilke, Mark T. Heise
46 [GO] mSphere 2024―Mar―19 Phylogenetic lineage dynamics of global parainfluenza virus type 3 post-COVID-19 pandemic Kihyun Lee, Kuenyoul Park, Heungsup Sung, Mi-Na Kim, Michael J. Imperiale
47 [GO] Microbiology Spectrum 2024―Mar―18 Application of MALDI-TOF MS and machine learning for the detection of SARS-CoV-2 and non-SARS-CoV-2 respiratory infections Sergey Yegorov, Irina Kadyrova, Ilya Korshukov, Aidana Sultanbekova, Yevgeniya Kolesnikova, Valentina Barkhanskaya, et al. (+14)
48 [GO] Microbiology Spectrum 2024―Mar―18 How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, et al. (+43)
49 [GO] Journal of Virology 2024―Mar―17 Oligomeric assembly of the C-terminal and transmembrane region of SARS-CoV-2 nsp3 Marion Babot, Yves Boulard, Samira Agouda, Laura Pieri, Sonia Fieulaine, Stéphane Bressanelli, et al. (+2)
50 [GO] Clinical Microbiology Reviews 2024―Mar―17 Testing for SARS-CoV-2: lessons learned and current use cases Elitza S. Theel, James E. Kirby, Nira R. Pollock, Ferric C. Fang
51 [GO] Journal of Virology 2024―Mar―17 Implementing governmental oversight of enhanced potential pandemic pathogen research Richard H. Ebright, Raina MacIntyre, Joseph P. Dudley, Colin D. Butler, Andre Goffinet, Edward Hammond, et al. (+14)
52 [GO] Journal of Virology 2024―Mar―17 Reply to Ebright et al., “Implementing governmental oversight of enhanced potential pandemic pathogen research” Angela L. Rasmussen, Gigi Gronvall, Anice C. Lowen, Felicia Goodrum, Stacey Schultz-Cherry
53 [GO] mSphere 2024―Mar―13 Immune imprinting of SARS-CoV-2 responses: changing first immune impressions J. Torresi, M. A. Edeling, Genevieve G. Fouda
54 [GO] mBio 2024―Mar―13 Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating Nikhila S. Tanneti, Anant K. Patel, Li Hui Tan, Andrew D. Marques, Ranawaka A. P. M. Perera, Scott Sherrill-Mix, et al. (+10)
55 [GO] Antimicrobial Agents and Chemotherapy 2024―Mar―12 Two-way pharmacodynamic modeling of drug combinations and its application to pairs of repurposed Ebola and SARS-CoV-2 agents Shuang Xu, Shadisadat Esmaeili, E. Fabian Cardozo-Ojeda, Ashish Goyal, Judith M. White, Stephen J. Polyak, et al. (+2)
56 [GO] Microbiology Spectrum 2024―Mar―11 Lung microbiota composition, respiratory mechanics, and outcomes in COVID-19-related ARDS Gennaro De Pascale, Brunella Posteraro, Flavio De Maio, Pia Clara Pafundi, Eloisa Sofia Tanzarella, Salvatore Lucio Cutuli, et al. (+8)
57 [GO] Microbiology Spectrum 2024―Mar―11 Determination of the cycle threshold value of the Xpert Xpress SARS-CoV-2/Flu/RSV test that corresponds to the presence of infectious SARS-CoV-2 in anterior nasal swabs Ryan F. Relich, Kayla Van Benten, Guang-Sheng Lei, Christopher M. Robinson, Mariel Carozza, Malaya K. Sahoo, et al. (+10)
58 [GO] mBio 2024―Mar―08 SARS-CoV-2 Omicron infection augments the magnitude and durability of systemic and mucosal immunity in triple-dose CoronaVac recipients Yuxin Chen, Tiantian Zhao, Lin Chen, Guozhi Jiang, Yu Geng, Wanting Li, et al. (+8)
59 [GO] Journal of Virology 2024―Mar―06 The PKA-CREB1 axis regulates coronavirus proliferation by viral helicase nsp13 association Tong Zheng, Beilei Shen, Yu Bai, Entao Li, Xun Zhang, Yong Hu, et al. (+10)
60 [GO] Antimicrobial Agents and Chemotherapy 2024―Mar―06 BPR3P0128, a non-nucleoside RNA-dependent RNA polymerase inhibitor, inhibits SARS-CoV-2 variants of concern and exerts synergistic antiviral activity in combination with remdesivir Wen-Fang Tang, Yu-Hsiu Chang, Cheng-Chin Lin, Jia-Rong Jheng, Chung-Fan Hsieh, Yuan-Fan Chin, et al. (+24)
61 [GO] Microbiology Spectrum 2024―Mar―05 The serological immunogenicity of the third and fourth doses of COVID-19 vaccine in patients with inflammatory rheumatic diseases on different biologic or targeted DMARDs: a Swedish nationwide study (COVID-19-REUMA) Martina Frodlund, Per Nived, Katerina Chatzidionysiou, Anna Södergren, Eva Klingberg, Monica Hansson, et al. (+6)
62 [GO] Microbiology Spectrum 2024―Mar―04 Sequence signatures within the genome of SARS-CoV-2 can be used to predict host source Josip Rudar, Peter Kruczkiewicz, Oksana Vernygora, G. Brian Golding, Mehrdad Hajibabaei, Oliver Lung, Luciana Jesus Costa
63 [GO] mSphere 2024―Mar―01 Reduced control of SARS-CoV-2 infection associates with lower mucosal antibody responses in pregnancy Laura A. St Clair, Raghda E. Eldesouki, Jaiprasath Sachithanandham, Anna Yin, Amary Fall, C. Paul Morris, et al. (+15)
64 [GO] Microbiology Spectrum 2024―Mar―01 A Dried Blood Spot protocol for high-throughput quantitative analysis of SARS-CoV-2 RBD serology based on the Roche Elecsys system Noemi Castelletti, Ivana Paunovic, Raquel Rubio-Acero, Jessica Beyerl, Michael Plank, Christina Reinkemeyer, et al. (+8)
65 [GO] Journal of Virology 2024―Feb―29 The SARS-CoV-2 Spike is a virulence determinant and plays a major role on the attenuated phenotype of Omicron virus in a feline model of infection Mathias Martins, Mohammed Nooruzzaman, Jessie Lee Cunningham, Chengjin Ye, Leonardo Cardia Caserta, Nathaniel Jackson, et al. (+4)
66 [GO] Journal of Clinical Microbiology 2024―Feb―28 Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale Sung Yong Park, Gina Faraci, Pamela Ward, Ha Youn Lee, Alexander Mellmann
67 [GO] Microbiology Spectrum 2024―Feb―28 Characterization of a neutralizing antibody that recognizes a loop region adjacent to the receptor-binding interface of the SARS-CoV-2 spike receptor-binding domain Itsuki Anzai, Junso Fujita, Chikako Ono, Yoichiro Kosaka, Yuki Miyamoto, Shintaro Shichinohe, et al. (+11)
68 [GO] Microbiology Spectrum 2024―Feb―28 Vero cell-adapted SARS-CoV-2 strain shows increased viral growth through furin-mediated efficient spike cleavage Shohei Minami, Tomohiro Kotaki, Yusuke Sakai, Shinya Okamura, Shiho Torii, Chikako Ono, et al. (+13)
69 [GO] Microbiology Resource Announcements 2024―Feb―27 Whole-genome sequencing of SARS-CoV-2 from the initial cases of domestic cat infections in Canada Asma Sultana, Dorothee Bienzle, Scott Weese, Brad Pickering, Peter Kruczkiewicz, Greg Smith, et al. (+3)
70 [GO] mBio 2024―Feb―27 Nsp1 facilitates SARS-CoV-2 replication through calcineurin-NFAT signaling Wai-Yin Lui, Chon Phin Ong, Pak-Hin Hinson Cheung, Zi-Wei Ye, Chi-Ping Chan, Kelvin Kai-Wang To, et al. (+3)
71 [GO] mBio 2024―Feb―27 Temperature impacts SARS-CoV-2 spike fusogenicity and evolution Jérémy Dufloo, Rafael Sanjuán, Vaughn S. Cooper, Christopher B. Brooke
72 [GO] mBio 2024―Feb―26 Finally neutralizing the threat? A novel SARS-CoV-2 vaccine platform that elicits enhanced neutralizing antibody responses Daniel J. Salamango, Rino Rappuoli
73 [GO] Journal of Clinical Microbiology 2024―Feb―21 Proceedings of the Clinical Microbiology Open 2022-assessing clinical laboratory and industry responses to COVID-19 pandemic testing capacity challenges (part 1) David R. Peaper, Christopher D. Doern, Susan Sharp, Romney M. Humphries
74 [GO] Microbiology Spectrum 2024―Feb―20 Inhibition of SARS-CoV-2 replication by a ssDNA aptamer targeting the nucleocapsid protein Yanping Huang, Congcong Huang, Junkai Chen, Siwei Chen, Bei Li, Jian Li, et al. (+7)
75 [GO] Microbiology Spectrum 2024―Feb―20 Bisbenzimide compounds inhibit the replication of prototype and pandemic potential poxviruses Jerzy Samolej, Diogo Correa Mendonca, Nicole Upfold, Marion McElwee, Mariann Landsberger, Artur Yakimovich, et al. (+4)
76 [GO] mBio 2024―Feb―16 SARS-CoV-2 evolution during prolonged infection in immunocompromised patients Andrew D. Marques, Jevon Graham-Wooten, Ayannah S. Fitzgerald, Ashley Sobel Leonard, Emma J. Cook, John K. Everett, et al. (+6)
77 [GO] Microbiology Spectrum 2024―Feb―16 SARS-CoV-2 infection in brown-headed spider monkeys ( Ateles fusciceps ) at a wildlife rescue center on the coast of Ecuador-South America Mateo Carvajal, Carolina Saenz, Nathalia Fuentes, Rommel Guevara, Erika Muñoz, Belen Prado-Vivar, et al. (+8)
78 [GO] Microbiology Spectrum 2024―Feb―16 Nanobody engineering for SARS-CoV-2 neutralization and detection Liina Hannula, Suvi Kuivanen, Jonathan Lasham, Ravi Kant, Lauri Kareinen, Mariia Bogacheva, et al. (+10)
79 [GO] Microbiology Spectrum 2024―Feb―14 Humoral and cellular immune responses against SARS-CoV-2 post-vaccination in immunocompetent and immunocompromised cancer populations Elizabeth Titova, Veronica W. Kan, Tara Lozy, Andrew Ip, Kileen Shier, Vittal P. Prakash, et al. (+12)
80 [GO] mBio 2024―Feb―13 Two complete 1918 influenza A/H1N1 pandemic virus genomes characterized by next-generation sequencing using RNA isolated from formalin-fixed, paraffin-embedded autopsy lung tissue samples along with evidence of secondary bacterial co-infection Yongli Xiao, Zong-Mei Sheng, Stephanie L. Williams, Jeffery K. Taubenberger, John A. Lednicky
81 [GO] mBio 2024―Feb―13 Calpain-2 mediates SARS-CoV-2 entry via regulating ACE2 levels Qiru Zeng, Avan Antia, Luis Alberto Casorla-Perez, Maritza Puray-Chavez, Sebla B. Kutluay, Matthew A. Ciorba, et al. (+2)
82 [GO] Microbiology Spectrum 2024―Feb―12 Effect of COVID-19 protective measures on the epidemiology characteristics of rotavirus, adenovirus, and coinfections among pediatric patients with acute gastroenteritis in Hangzhou, China Jianming Zhou, Yanhong Sun, Jie Wang
83 [GO] Journal of Virology 2024―Feb―09 Kidney organoids reveal redundancy in viral entry pathways during ACE2-dependent SARS-CoV-2 infection Jessica M. Vanslambrouck, Jessica A. Neil, Rajeev Rudraraju, Sophia Mah, Ker Sin Tan, Ella Groenewegen, et al. (+7)
84 [GO] Microbiology Spectrum 2024―Feb―09 Intranasal SARS-CoV-2 RBD decorated nanoparticle vaccine enhances viral clearance in the Syrian hamster model Devanshi R. Patel, Allen M. Minns, Derek G. Sim, Cassandra J. Field, Abigail E. Kerr, Talia A. Heinly, et al. (+9)
85 [GO] Microbiology Spectrum 2024―Feb―08 Influenza-like illness symptoms due to endemic human coronavirus reinfections are not influenced by the length of the interval separating reinfections Ferdyansyah Sechan, Arthur W. D. Edridge, Jacqueline van Rijswijk, Maarten F. Jebbink, Martin Deijs, Margreet Bakker, et al. (+4)
86 [GO] Microbiology Spectrum 2024―Feb―06 Increased antibody titers but induced T cell AICD and apoptosis response in COVID-19 convalescents by inactivated vaccine booster Jingmin Zhao, Han Zhang, Lina Jiang, Fang Cheng, Wei Li, Zihao Wang, et al. (+13)
87 [GO] Antimicrobial Agents and Chemotherapy 2024―Feb―06 Repurposing screen identifies novel candidates for broad-spectrum coronavirus antivirals and druggable host targets Sibylle Haid, Alina Matthaei, Melina Winkler, Svenja M. Sake, Antonia P. Gunesch, Vanessa Milke, et al. (+17)
88 [GO] Microbiology Spectrum 2024―Feb―06 A photocontrolled one-pot isothermal amplification and CRISPR-Cas12a assay for rapid detection of SARS-CoV-2 Omicron variants Qian Sun, Hongqing Lin, Yuan Li, Liping Yuan, Baisheng Li, Yunan Ma, et al. (+5)
89 [GO] Journal of Clinical Microbiology 2024―Feb―05 Rapid, high-throughput, cost-effective whole-genome sequencing of SARS-CoV-2 using a condensed library preparation of the Illumina DNA Prep kit Rebecca Hickman, Jason Nguyen, Tracy D. Lee, John R. Tyson, Robert Azana, Frankie Tsang, et al. (+3)
90 [GO] Microbiology Spectrum 2024―Feb―05 Spatiotemporal dynamics and epidemiological impact of SARS-CoV-2 XBB lineage dissemination in Brazil in 2023 Ighor Arantes, Marcelo Gomes, Kimihito Ito, Sharbilla Sarafim, Tiago Gräf, Fabio Miyajima, et al. (+8)
91 [GO] mBio 2024―Feb―02 NSP6 inhibits the production of ACE2-containing exosomes to promote SARS-CoV-2 infectivity Xi Lv, Ran Chen, Taizhen Liang, Haojie Peng, Qiannan Fang, Shiqi Xiao, et al. (+14)
92 [GO] Journal of Virology 2024―Feb―02 Structural basis and analysis of hamster ACE2 binding to different SARS-CoV-2 spike RBDs Sheng Niu, Zhennan Zhao, Zhimin Liu, Xiaoyu Rong, Yan Chai, Bin Bai, et al. (+10)
93 [GO] Microbiology Spectrum 2024―Feb―01 Respiratory virus coinfections during the COVID-19 pandemic: epidemiologic analysis and clinical outcomes from the Phase 2/3 molnupiravir trial (MOVe-OUT) Matthew G. Johnson, Julie M. Strizki, Erin Jensen, Jonathan Cohen, Christine Katlama, Roman Fishchuk, et al. (+14)
94 [GO] Journal of Virology 2024―Feb―01 Phospho-eIF4E stimulation regulates coronavirus entry by selective expression of cell membrane-residential factors Xiu-Zhong Zhang, Jing Wang, Wen-Jun Tian, Jing-Ling You, Xiao-Jing Chi, Xiao-Jia Wang, Shan-Lu Liu
95 [GO] Journal of Virology 2024―Feb―01 SARS-CoV-2 spike-FLIPr fusion protein plus lipidated FLIPr protects against various SARS-CoV-2 variants in hamsters Ming-Shu Hsieh, Chia-Wei Hsu, Hung-Chun Liao, Chang-Ling Lin, Chen-Yi Chiang, Mei-Yu Chen, et al. (+4)
96 [GO] Microbiology Spectrum 2024―Feb―01 Swine influenza A virus isolates containing the pandemic H1N1 origin matrix gene elicit greater disease in the murine model Shelly J. Curran, Emily F. Griffin, Lucas M. Ferreri, Constantinos S. Kyriakis, Elizabeth W. Howerth, Daniel R. Perez, et al. (+2)
97 [GO] Antimicrobial Agents and Chemotherapy 2024―Jan―31 Manidipine is not a potential inhibitor against SARS-CoV-2 main protease Rui Zhang, Jiahao Zhou, Haohao Yan, Xiaoping Liu, Chao Shang, Yunyu Chen, Miguel Angel Martinez
98 [GO] Antimicrobial Agents and Chemotherapy 2024―Jan―30 Effectiveness and safety of nirmatrelvir-ritonavir in kidney transplant recipients with severe kidney dysfunction infected with COVID-19 Hui Yang, Xin Yu, Wenjing Hou, Xiangduan Liu, Jiaojiao Chen, Ying Zhang, et al. (+6)
99 [GO] Journal of Virology 2024―Jan―30 Cleavage of HDAC6 to dampen its antiviral activity by nsp5 is a common strategy of swine enteric coronaviruses Zhuang Li, Wenwen Xiao, Zhixiang Yang, Jiahui Guo, Junwei Zhou, Shaobo Xiao, et al. (+3)
100 [GO] Microbiology Spectrum 2024―Jan―30 Development and evaluation of three automated media pooling and molecular diagnostic systems for the detection of SARS-CoV-2 Yasufumi Matsumura, Taro Noguchi, Koh Shinohara, Masaki Yamamoto, Miki Nagao, Paul M. Luethy
101 [GO] Journal of Virology 2024―Jan―30 SARS-CoV-2 and oncolytic EV-D68-encoded proteases differentially regulate pyroptosis Siyu Shen, Haoran Guo, Yan Li, Lili Zhang, Yubin Tang, Huili Li, et al. (+5)
102 [GO] Microbiology Spectrum 2024―Jan―30 Exploring nasopharyngeal microbiota profile in children affected by SARS-CoV-2 infection L. Romani, F. Del Chierico, S. Pane, M. V. Ristori, I. Pirona, V. Guarrasi, et al. (+26)
103 [GO] mBio 2024―Jan―26 The E3 ligase TRIM22 restricts SARS-CoV-2 replication by promoting proteasomal degradation of NSP8 Lujie Fan, Yuzheng Zhou, Xiafei Wei, Wei Feng, Huimin Guo, Yunfei Li, et al. (+9)
104 [GO] mBio 2024―Jan―25 Cross-protective HCoV immunity reduces symptom development during SARS-CoV-2 infection Irene A. Abela, Magdalena Schwarzmüller, Agne Ulyte, Thomas Radtke, Sarah R. Haile, Priska Ammann, et al. (+20)
105 [GO] mBio 2024―Jan―24 CRL4B E3 ligase recruited by PRPF19 inhibits SARS-CoV-2 infection by targeting ORF6 for ubiquitin-dependent degradation Linran Zhang, Pengfei Hao, Xiang Chen, Shuai Lv, Wenying Gao, Chang Li, et al. (+3)
106 [GO] Applied and Environmental Microbiology 2024―Jan―23 The role of ion dissolution in metal and metal oxide surface inactivation of SARS-CoV-2 Jane Hilton, Yoshiko Nanao, Machiel Flokstra, Meisam Askari, Terry K. Smith, Andrea Di Falco, et al. (+4)
107 [GO] Microbiology Spectrum 2024―Jan―22 Erratum for Sazed et al., “Direct Nasal Swab for Rapid Test and Saliva as an Alternative Biological Sample for RT-PCR in COVID-19 Diagnosis” Saiful Arefeen Sazed, Mohammad Golam Kibria, Md Fahad Zamil, Mohammad Sharif Hossain, Jeba Zaman Khan, Rifat Tasnim Juthi, et al. (+5)
108 [GO] Journal of Virology 2024―Jan―18 An RNA replicon system to investigate promising inhibitors of feline coronavirus Kimberly Schmied, Rosina Ehmann, Claudia Kristen-Burmann, Nadine Ebert, Güliz Tuba Barut, Lea Almeida, et al. (+7)
109 [GO] Microbiology Spectrum 2024―Jan―17 Risk factors for SARS-CoV-2 pneumonia among renal transplant recipients in Beijing Omicron wave Guangping Li, Jiangtao Wu, Ying Huang, Qi Wang, Tianying Xing, Tongwen Ou, Anna Moniuszko-Malinowska
110 [GO] Microbiology Spectrum 2024―Jan―17 ACE2 and TMPRSS2 distribution in the respiratory tract of different animal species and its correlation with SARS-CoV-2 tissue tropism Mariano Carossino, Sudeh Izadmehr, Jessie D. Trujillo, Natasha N. Gaudreault, Wellesley Dittmar, Igor Morozov, et al. (+5)
111 [GO] Microbiology Spectrum 2024―Jan―17 Creation of the HIV-1 antisense gene asp coincided with the emergence of the pandemic group M and is associated with faster disease progression Angelo Pavesi, Fabio Romerio, Oliver Laeyendecker
112 [GO] Microbiology Spectrum 2024―Jan―16 Antiviral action of a functionalized plastic surface against human coronaviruses Sailee Shroff, Marjo Haapakoski, Kosti Tapio, Mira Laajala, Miika Leppänen, Zlatka Plavec, et al. (+6)
113 [GO] Journal of Microbiology and Biology Education 2024―Jan―12 Incorporating art into a biology course: a student-curated art exhibition about COVID-19 David R. Wessner, Lia Rose Newman, Marisa J. Pascucci, Nella Tsudis, Laura J. MacDonald
114 [GO] Microbiology Spectrum 2024―Jan―12 Risk factors for recognized and unrecognized SARS-CoV-2 infection: a seroepidemiologic analysis of the Prospective Urban Rural Epidemiology (PURE) study Darryl P. Leong, Mark Loeb, Prem K. Mony, Sumathy Rangarajan, Maha Mushtaha, Matthew S. Miller, et al. (+18)
115 [GO] Journal of Virology 2024―Jan―11 Harnessing preexisting influenza virus-specific immunity increases antibody responses against SARS-CoV-2 Harrison Dulin, Ramya S. Barre, Duo Xu, Arrmund Neal, Edward Vizcarra, Jerald Chavez, et al. (+10)
116 [GO] Microbiology Spectrum 2024―Jan―11 Comparison of analytical performance and economic value of two biosurveillance methods for tracking SARS-COV-2 variants of concern Nicholas P. Pinkhover, Kerriann M. Pontbriand, Kelli P. Fletcher, Eduardo Sanchez, Kenneth Okello, Liam M. Garvey, et al. (+9)
117 [GO] Journal of Virology 2024―Jan―10 Gut microbiota-derived butyrate promotes coronavirus TGEV infection through impairing RIG-I-triggered local type I interferon responses via class I HDAC inhibition Lingdan Yin, Xiang Liu, Yao Yao, Mengqi Yuan, Yi Luo, Guozhong Zhang, et al. (+3)
118 [GO] Microbiology Spectrum 2024―Jan―10 Analysis of SARS-CoV-2 genome evolutionary patterns Shubhangi Gupta, Deepanshu Gupta, Sonika Bhatnagar, Cyprian C. Rossetto
119 [GO] Microbiology Spectrum 2024―Jan―10 SARS-CoV-2 viral dynamics in a placebo-controlled phase 2 study of patients infected with the SARS-CoV-2 Omicron variant and treated with pomotrelvir Katyna Borroto-Esoda, David Wilfret, Xiao Tong, Andrew Plummer, Brian Kearney, Ann D. Kwong, Anne Piantadosi
120 [GO] Microbiology Spectrum 2024―Jan―09 Effect of nasal carriage of Bacillus species on COVID-19 severity: a cross-sectional study Muinah A. Fowora, Adenike Aiyedogbon, Ibilola Omolopo, Ahmed O. Tajudeen, Abdul-Lateef Olanlege, Adefunke Abioye, et al. (+3)
121 [GO] Microbiology Spectrum 2024―Jan―09 Optimization of the STARlet workflow for semi-automatic SARS-CoV-2 screening of swabs and deep respiratory materials using the RealAccurate Quadruplex SARS-CoV-2 PCR kit and Allplex SARS-CoV-2 PCR kit Jacky Flipse, Angelino T. Tromp, Danique Thijssen, Nicole van Xanten-Jans-Beken, Roy Pauwelsen, Harmen J. van der Veer, et al. (+3)
122 [GO] mBio 2024―Jan―09 Surface-modified measles vaccines encoding oligomeric, prefusion-stabilized SARS-CoV-2 spike glycoproteins boost neutralizing antibody responses to Omicron and historical variants, independent of measles seropositivity Miguel Á. Muñoz-Alía, Rebecca A. Nace, Baskar Balakrishnan, Lianwen Zhang, Nandakumar Packiriswamy, Gagandeep Singh, et al. (+9)
123 [GO] mBio 2024―Jan―09 SARS-CoV-2 spike glycosylation affects function and neutralization sensitivity Fengwen Zhang, Fabian Schmidt, Frauke Muecksch, Zijun Wang, Anna Gazumyan, Michel C. Nussenzweig, et al. (+5)
124 [GO] Microbiology Spectrum 2024―Jan―08 Assessment of the clinical and analytical performance of three Seegene Allplex SARS-CoV-2 assays within the VALCOR framework Pui Yan Jenny Chung, Sharonjit K. Dhillon, Cindy Simoens, Lize Cuypers, Lies Laenen, Jesper Bonde, et al. (+7)
125 [GO] Microbiology Spectrum 2024―Jan―08 Recurrent SARS-CoV-2 mutations at Spike D796 evade antibodies from pre-Omicron convalescent and vaccinated subjects Evan A. Elko, Heather L. Mead, Georgia A. Nelson, John A. Zaia, Jason T. Ladner, John A. Altin, Luciana Jesus Costa
126 [GO] Microbiology Spectrum 2024―Jan―08 Genome-wide bioinformatics analysis of human protease capacity for proteolytic cleavage of the SARS-CoV-2 spike glycoprotein Evgenii V. Matveev, Gennady V. Ponomarev, Marat D. Kazanov, Takamasa Ueno
127 [GO] Microbiology Spectrum 2024―Jan―08 How do deer respiratory epithelial cells weather the initial storm of SARS-CoV-2 WA1/2020 strain? Kaitlyn M. Sarlo Davila, Rahul K. Nelli, Kruttika S. Phadke, Rachel M. Ruden, Yongming Sang, Bryan H. Bellaire, et al. (+3)
128 [GO] Journal of Virology 2024―Jan―05 Porcine reproductive and respiratory syndrome virus triggers Golgi apparatus fragmentation-mediated autophagy to facilitate viral self-replication Shuang-shuang Zhao, Qisheng Qian, Xin-xin Chen, Qingxia Lu, Guangxu Xing, Songlin Qiao, et al. (+3)
129 [GO] Journal of Virology 2024―Jan―04 Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection Mireille Farjo, Katia Koelle, Michael A. Martin, Laura L. Gibson, Kimberly K. O. Walden, Gloria Rendon, et al. (+11)
130 [GO] Journal of Virology 2024―Jan―03 Adaptation of SARS-CoV-2 to ACE2 H353K mice reveals new spike residues that drive mouse infection Kun Li, Abhishek Verma, Pengfei Li, Miguel E. Ortiz, Grant M. Hawkins, Nicholas J. Schnicker, et al. (+9)
131 [GO] Journal of Clinical Microbiology 2023―Dec―22 Retrospective evaluation of clinical decision support for within-laboratory optimization of SARS-CoV-2 NAAT workflow Thomas J. S. Durant, David R. Peaper, Alexander J. McAdam
132 [GO] Journal of Clinical Microbiology 2023―Dec―22 Tiny swabs: nasal swabs integrated into tube caps facilitate large-scale self-collected SARS-CoV-2 testing Brian Pfau, Jordan Opsahl, Ruben Crew, Sabrina Best, Peter D. Han, Sarah Heidl, et al. (+26)
133 [GO] mBio 2023―Dec―21 Potent 3CLpro inhibitors effective against SARS-CoV-2 and MERS-CoV in animal models by therapeutic treatment Pengfei Li, Yunjeong Kim, Chamandi S. Dampalla, Harry Nhat Nguyen, David K. Meyerholz, David K. Johnson, et al. (+6)
134 [GO] mBio 2023―Dec―19 Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency Kaiyuan Shi, Linjie Li, Chunliang Luo, Zepeng Xu, Baihan Huang, Sufang Ma, et al. (+4)
135 [GO] Antimicrobial Agents and Chemotherapy 2023―Dec―15 Phase I study, and dosing regimen selection for a pivotal COVID-19 trial of GST-HG171 Hong Zhang, Jing Zhou, Hong Chen, John Mao, Yanan Tang, Wenhao Yan, et al. (+8)
136 [GO] Journal of Virology 2023―Dec―15 DYRK1A is a multifunctional host factor that regulates coronavirus replication in a kinase-independent manner Zhen Fu, Yixin Xiang, Yanan Fu, Zhelin Su, Yubei Tan, Mengfang Yang, et al. (+7)
137 [GO] Clinical Microbiology Reviews 2023―Dec―14 Wastewater-based surveillance as a tool for public health action: SARS-CoV-2 and beyond Michael D. Parkins, Bonita E. Lee, Nicole Acosta, Maria Bautista, Casey R. J. Hubert, Steve E. Hrudey, et al. (+3)
138 [GO] mSystems 2023―Dec―14 The most exposed regions of SARS-CoV-2 structural proteins are subject to strong positive selection and gene overlap may locally modify this behavior Alejandro Rubio, Maria de Toro, Antonio J. Pérez-Pulido, Irina El Khoury
139 [GO] Microbiology Spectrum 2023―Dec―13 Lymphocyte and neutrophil count combined with intestinal bacteria abundance predict the severity of COVID-19 Liuying Chen, Zhongwei Yin, Dan Zhou, Xin Li, Cheng Yu, Chang Luo, et al. (+10)
140 [GO] Journal of Virology 2023―Dec―13 Evolutionary deletions within the SARS-CoV-2 genome as signature trends for virus fitness and adaptation Pedro Miguel Carneiro Jeronimo, Cleber Furtado Aksenen, Igor Oliveira Duarte, Roberto D. Lins, Fabio Miyajima, Suchetana Mukhopadhyay
141 [GO] Journal of Virology 2023―Dec―13 High fusion and cytopathy of SARS-CoV-2 variant B.1.640.1 William Bolland, Vincent Michel, Delphine Planas, Mathieu Hubert, Isabelle Staropoli, Florence Guivel-Benhassine, et al. (+15)
142 [GO] Microbiology Spectrum 2023―Dec―12 Targeted amplification and genetic sequencing of the severe acute respiratory syndrome coronavirus 2 surface glycoprotein Matthew W. Keller, Lisa M. Keong, Benjamin L. Rambo-Martin, Norman Hassell, Kristine A. Lacek, Malania M. Wilson, et al. (+10)
143 [GO] Journal of Virology 2023―Dec―12 A nanobody inhibiting porcine reproductive and respiratory syndrome virus replication via blocking self-interaction of viral nucleocapsid protein Hong Duan, Xu Chen, Ziwei Zhang, Zhijie Zhang, Zhihan Li, Xinjie Wang, et al. (+7)
144 [GO] mBio 2023―Dec―11 Endoplasmic reticulum-associated SARS-CoV-2 ORF3a elicits heightened cytopathic effects despite robust ER-associated degradation Jiantao Zhang, Ruth Cruz-Cosme, Chenyu Zhang, Dongxiao Liu, Qiyi Tang, Richard Y. Zhao, Diane E. Griffin
145 [GO] mBio 2023―Dec―11 The American Academy of Microbiology discusses gain-of-function research of concern (GOFROC) and enhanced potential pandemic pathogens (ePPP) Arturo Casadevall, Michael J. Imperiale, Nguyen K. Nguyen, Vanessa Sperandio
146 [GO] Microbiology Spectrum 2023―Dec―07 Erratum for Liu et al., “Ubiquitination of SARS-CoV-2 ORF7a Prevents Cell Death Induced by Recruiting BclXL To Activate ER Stress” Zhixin Liu, Yanan Fu, Yanping Huang, Feng Zeng, Jingjing Rao, Xiao Xiao, et al. (+6)
147 [GO] Microbiology Spectrum 2023―Dec―07 Genetic features of antimicrobial drug-susceptible extraintestinal pathogenic Escherichia coli pandemic sequence type 95 Yuan Hu Allegretti, Reina Yamaji, Sheila Adams-Sapper, Lee W. Riley, Neelam Taneja
148 [GO] mBio 2023―Dec―06 An in vitro experimental pipeline to characterize the epitope of a SARS-CoV-2 neutralizing antibody Kristina E. Atanasoff, Luca Brambilla, Daniel C. Adelsberg, Shreyas Kowdle, Christian S. Stevens, Stefan Slamanig, et al. (+11)
149 [GO] Journal of Virology 2023―Dec―05 SARS-CoV-2 exploits cellular RAD51 to promote viral propagation: implication of RAD51 inhibitor as a potential drug candidate against COVID-19 Thuy X. Pham, Trang T. X. Huynh, Jiwon Choi, Jae-Bong Lee, Seok-Chan Park, Bumseok Kim, et al. (+3)
150 [GO] Microbiology Spectrum 2023―Dec―05 Epidemiological characteristics of respiratory viruses in children during the COVID-19 epidemic in Chengdu, China Zheng-Xiang Gao, Ya Wang, Ling-Yi Yan, Ting Liu, Lei-Wen Peng, Tulip A. Jhaveri
151 [GO] Antimicrobial Agents and Chemotherapy 2023―Dec―04 Molnupiravir maintains antiviral activity against SARS-CoV-2 variants and exhibits a high barrier to the development of resistance Julie M. Strizki, John M. Gaspar, John A. Howe, Beth Hutchins, Hiroshi Mohri, Manoj S. Nair, et al. (+5)
152 [GO] mBio 2023―Dec―04 The glycoprotein 5 of porcine reproductive and respiratory syndrome virus stimulates mitochondrial ROS to facilitate viral replication Shuang Zhang, Lei Zeng, Bing-Qian Su, Guo-Yu Yang, Jiang Wang, Sheng-Li Ming, et al. (+2)
153 [GO] Journal of Virology 2023―Dec―01 A multi-epitope/CXCL11 prime/pull coronavirus mucosal vaccine boosts the frequency and the function of lung-resident memory CD4 + and CD8 + T cells and enhanced protection against COVID-19-like symptoms and death caused by SARS-CoV-2 infection Latifa Zayou, Swayam Prakash, Nisha Rajeswari Dhanushkodi, Afshana Quadiri, Izabela Coimbra Ibraim, Mahmoud Singer, et al. (+14)
154 [GO] Journal of Virology 2023―Dec―01 Amino acid substitution L232F in non-structural protein 6 identified as a possible human-adaptive mutation in clade B MERS coronaviruses Ray T. Y. So, Daniel K. W. Chu, Kenrie P. Y. Hui, Chris K. P. Mok, Marcus H. H. Shum, Sumana Sanyal, et al. (+11)
155 [GO] mBio 2023―Dec―01 Mucosal antibody responses to SARS-CoV-2 booster vaccination and breakthrough infection Disha Bhavsar, Gagandeep Singh, Kaori Sano, Charles Gleason, Komal Srivastava, Juan Manuel Carreno, et al. (+23)
156 [GO] mBio 2023―Nov―29 Diversity of short linear interaction motifs in SARS-CoV-2 nucleocapsid protein Peter Schuck, Huaying Zhao, Nihal Altan-Bonnet
157 [GO] Journal of Virology 2023―Nov―29 Cryptic-site-specific antibodies to the SARS-CoV-2 receptor binding domain can retain functional binding affinity to spike variants Kan Li, Richard H. C. Huntwork, Gillian Q. Horn, Milite Abraha, Kathryn M. Hastie, Haoyang Li, et al. (+14)
158 [GO] Microbiology Spectrum 2023―Nov―29 Comprehensive, comparative evaluation of 25 automated SARS-CoV-2 serology assays Wayne Dimech, Shannon Curley, Jing Jing Cai, Oliver Laeyendecker
159 [GO] Microbiology Spectrum 2023―Nov―28 SalivaDirect: an alternative to a conventional RNA extraction protocol for molecular detection of SARS-CoV-2 in a clinical setting Mohammad Khaja Mafij Uddin, Mohammad Enayet Hossain, Jenifar Quaiyum Ami, Rashedul Hasan, Md. Mahmudul Hasan, Ashabul Islam, et al. (+8)
160 [GO] Microbiology Spectrum 2023―Nov―27 COVID-19 convalescent plasma therapy decreases inflammatory cytokines: a randomized controlled trial Feben Habtehyimer, Xianming Zhu, Andrew D. Redd, Kelly A. Gebo, Alison G. Abraham, Eshan U. Patel, et al. (+42)
161 [GO] Microbiology Spectrum 2023―Nov―27 Establishment of a screening platform based on human coronavirus OC43 for the identification of microbial natural products with antiviral activity Blanca Martínez-Arribas, Frederick Annang, Rosario Díaz-González, Guiomar Pérez-Moreno, Jesús Martín, Thomas A. Mackenzie, et al. (+8)
162 [GO] Microbiology Spectrum 2023―Nov―27 Spatiotemporal analysis of SARS-CoV-2 infection reveals an expansive wave of monocyte-derived macrophages associated with vascular damage and virus clearance in hamster lungs Ola Bagato, Anne Balkema-Buschmann, Daniel Todt, Saskia Weber, André Gömer, Bingqian Qu, et al. (+8)
163 [GO] Journal of Virology 2023―Nov―21 Puzzles, challenges, and information reservoir of SARS-CoV-2 quasispecies Esteban Domingo, Brenda Martínez-González, Carlos García-Crespo, Pilar Somovilla, Ana Isabel de Ávila, María Eugenia Soria, et al. (+3)
164 [GO] Applied and Environmental Microbiology 2023―Nov―20 In vitro digestion of SARS-CoV-2 contaminated berries reveals high inactivation of infectious virus during gastrointestinal passage Malak A. Esseili, Christopher A. Elkins
165 [GO] Microbiology Spectrum 2023―Nov―20 Longitudinal monitoring of SARS-CoV-2 viral load in self-collected saliva from health care workers during breakthrough infections to spare working days Valeria Caneparo, Carmela Rinaldi, Daniela Ferrante, Paolo Ravanini, Irene Lo Cigno, Silvia Cavalieri, et al. (+3)
166 [GO] Microbiology Spectrum 2023―Nov―17 Efficacy of combined COVID-19 convalescent plasma with oral RNA-dependent RNA polymerase inhibitor treatment versus neutralizing monoclonal antibody therapy in COVID-19 outpatients: a multi-center, non-inferiority, open-label randomized controlled trial (PlasMab) Taweegrit Siripongboonsitti, Nuttakant Nontawong, Kriangkrai Tawinprai, Ornpreya Suptawiwat, Kamonwan Soonklang, Yong Poovorawan, et al. (+2)
167 [GO] Microbiology Spectrum 2023―Nov―17 The impact of the COVID-19 pandemic on blood culture practices and bloodstream infections Matt Driedger, Nick Daneman, Kevin Brown, Wayne L. Gold, Sarah C.J. Jorgensen, Colleen Maxwell, et al. (+7)
168 [GO] Journal of Virology 2023―Nov―17 Type I interferon signaling induces a delayed antiproliferative response in respiratory epithelial cells during SARS-CoV-2 infection Juliana Bragazzi Cunha, Kyle Leix, Emily J. Sherman, Carmen Mirabelli, Tristan Frum, Charles J. Zhang, et al. (+8)
169 [GO] Microbiology Spectrum 2023―Nov―16 Cytomegalovirus-vectored COVID-19 vaccines elicit neutralizing antibodies against the SARS-CoV-2 Omicron variant (BA.2) in mice Jian Liu, Dabbu Kumar Jaijyan, Yanling Chen, Changcan Feng, Shaomin Yang, Zhenglong Xu, et al. (+6)
170 [GO] Microbiology Spectrum 2023―Nov―15 Classification of patients with COVID-19 by blood RNA endotype: a prospective cohort study Jumpei Yoshimura, Yuki Togami, Takeshi Ebihara, Hisatake Matsumoto, Yumi Mitsuyama, Fuminori Sugihara, et al. (+4)
171 [GO] Journal of Microbiology and Biology Education 2023―Nov―15 Pete and the Missing Scissors: a primary literature-focused case study that highlights the impact of SARS-CoV-2 on splicing Meagan Harrington, April Lane, Caroline Yencha, Kiran Kelly-Rajan, Laura E. Ott, Nancy Maroushek Boury
172 [GO] Microbiology Spectrum 2023―Nov―15 Immune targets to stop future SARS-CoV-2 variants Milena Silva Souza, Jéssica Pires Farias, Wilson Barros Luiz, Alexander Birbrair, Ricardo Durães-Carvalho, Luís Carlos de Souza Ferreira, et al. (+2)
173 [GO] Microbiology Spectrum 2023―Nov―14 Real-world evaluation of the Lucira Check-It COVID-19 loop-mediated amplification (LAMP) test Elizabeth Simms, Gregory R. McCracken, Todd F. Hatchette, Shelly A. McNeil, Ian Davis, Noella Whelan, et al. (+4)
174 [GO] mBio 2023―Nov―10 Correction for Castaño-Rodriguez et al., “Role of Severe Acute Respiratory Syndrome Coronavirus Viroporins E, 3a, and 8a in Replication and Pathogenesis” Carlos Castaño-Rodríguez, Jose M. Honrubia, Javier Gutierrez-Álvarez, Marta L. DeDiego, Jose L. Nieto-Torres, Jose M. Jimenez-Guardeño, et al. (+9)
175 [GO] Microbiology Spectrum 2023―Nov―09 Evolution of SARS-CoV-2 Spikes shapes their binding affinities to animal ACE2 orthologs Weitong Yao, Yujun Li, Danting Ma, Xudong Hou, Haimin Wang, Xiaojuan Tang, et al. (+12)
176 [GO] Microbiology Spectrum 2023―Nov―09 Development and evaluation of the automated multipurpose molecular testing system PCRpack for high-throughput SARS-CoV-2 testing Yasufumi Matsumura, Tomofumi Nakazaki, Kanako Kitamori, Eiki Kure, Koh Shinohara, Yasuhiro Tsuchido, et al. (+5)
177 [GO] mBio 2023―Nov―08 Seasonality of endemic COVID-19 Jeffrey P. Townsend, Hayley B. Hassler, April D. Lamb, Pratha Sah, Aia Alvarez Nishio, Cameron Nguyen, et al. (+4)
178 [GO] mBio 2023―Nov―08 Factors associated with mortality among hospitalized patients with COVID-19 disease treated with convalescent plasma Armando M. Perichon, Andrea Acosta, Liliana Di Tulio, Maria José Munuce, Stella Pezzotto, Oscar Bottasso, et al. (+2)
179 [GO] Microbiology Spectrum 2023―Nov―08 Assessing airborne transmission risks in COVID-19 hospitals by systematically monitoring SARS-CoV-2 in the air Shanglin Li, Jiazhen Guo, Yin Gu, Yan Meng, Ming He, Shangzhi Yang, et al. (+7)
180 [GO] Microbiology Spectrum 2023―Nov―08 Spatiotemporal observations of host-pathogen interactions in mucosa during SARS-CoV-2 infection indicate a protective role of ILC2s Wei Hu, Lu Meng, Chao Wang, Wenhan Lu, Xiaoyu Tong, Rui Lin, et al. (+18)
181 [GO] Journal of Virology 2023―Nov―06 SARS-CoV-2 NSP12 associates with TRiC and the P323L substitution acts as a host adaption Muhannad Alruwaili, Stuart Armstrong, Tessa Prince, Maximillian Erdmann, David A. Matthews, Lisa Luu, et al. (+4)
182 [GO] Microbiology Spectrum 2023―Nov―01 Global genomic diversity and conservation of SARS-CoV-2 since the COVID-19 outbreak Heng Li, Liping Ding, Rui Liao, Nini Li, Xiaoping Hong, Zhenyou Jiang, et al. (+2)
183 [GO] Microbiology Spectrum 2023―Nov―01 The fourth COVID-19 vaccine dose increased the neutralizing antibody response against the SARS-CoV-2 Omicron (B.1.1.529) variant in a diverse Brazilian population Jéssica Pires Farias, Robert Andreata-Santos, Ruth Dalety da Silva Brito, Milena Silva Souza, Mayanna Moreira Costa Fogaça, Josilene Ramos Pinheiro, et al. (+12)
184 [GO] Microbiology Spectrum 2023―Nov―01 Performance evaluation of the cobas SARS-CoV-2 Duo, a novel qualitative and quantitative assay, for the detection of SARS-CoV-2 RNA Yang-Di Su, Chih-Cheng Lai, Tsai-Hsiu Lin, Wei-Cheng Chen, Po-Ren Hsueh, Ana Cabrera
185 [GO] Microbiology Spectrum 2023―Nov―01 Enhanced immunogenicity elicited by a novel DNA vaccine encoding the SARS-CoV-2 S1 protein fused to the optimized flagellin of Salmonella typhimurium in mice Li Song, Qiaoju Wang, Yaya Wen, Ruimeng Tan, Yaodan Cui, Dan Xiong, et al. (+3)
186 [GO] Microbiology Spectrum 2023―Oct―31 Upper respiratory tract microbiome profiles in SARS-CoV-2 Delta and Omicron infected patients exhibit variant specific patterns and robust prediction of disease groups Shankha Nath, Mousumi Sarkar, Ankita Maddheshiya, Debjit De, Shouvik Paul, Souradeep Dey, et al. (+9)
187 [GO] Journal of Virology 2023―Oct―31 Identification of host dependency factors involved in SARS-CoV-2 replication organelle formation through proteomics and ultrastructural analysis Felix Pahmeier, Teresa-Maria Lavacca, Sarah Goellner, Christopher J. Neufeldt, Vibhu Prasad, Berati Cerikan, et al. (+8)
188 [GO] Applied and Environmental Microbiology 2023―Oct―30 Persistence of SARS-CoV-2 and its surrogate, bacteriophage Phi6, on surfaces and in water Ana K. Pitol, Samiksha Venkatesan, Michael Hoptroff, Grant L. Hughes, Christopher A. Elkins
189 [GO] Journal of Clinical Microbiology 2023―Oct―30 Multi-center clinical evaluation of the Panther Fusion SARS-CoV-2/Flu A/B/RSV assay in nasopharyngeal swab specimens from symptomatic individuals Anjana Sasidharan, Rangaraj Selvarangan, Kennah Konrad, Matthew L. Faron, Salika M. Shakir, David Hillyard, et al. (+9)
190 [GO] Microbiology Spectrum 2023―Oct―26 Characteristics of respiratory viruses’ circulation through a six-year period (2016-2022) in a pediatric population in Normandy, France, and the impact of COVID-19 pandemic J. Dina, A. Moisan, P. Thibon, C. Creveuil, J. Adnet, A. Vabret, et al. (+3)
191 [GO] Microbiology Spectrum 2023―Oct―26 Design and validation of an exposure system for efficient inter-animal SARS-CoV-2 airborne transmission in Syrian hamsters Philip J. Kuehl, Justin Dearing, Adam Werts, Jason Cox, Hammad Irshad, Edward G. Barrett, et al. (+3)
192 [GO] mSphere 2023―Oct―26 Genomic epidemiology reveals the dominance of Hennepin County in the transmission of SARS-CoV-2 in Minnesota from 2020 to 2022 Matthew Scotch, Kimberly Lauer, Eric D. Wieben, Yesesri Cherukuri, Julie M. Cunningham, Eric W. Klee, et al. (+15)
193 [GO] mBio 2023―Oct―26 Contrasting roles of MERS-CoV and SARS-CoV-2 internal proteins in pathogenesis in mice Lok-Yin Roy Wong, Abby Odle, Emma Luhmann, Douglas C. Wu, Yiquan Wang, Qi Wen Teo, et al. (+10)
194 [GO] Microbiology Spectrum 2023―Oct―26 Erratum for Fernandez-Pittol et al., “Assessment of QuantuMDx Q-POC Assay for Rapid Detection of SARS-CoV-2 Using Middle Turbinate Swabs” Mariana Fernandez-Pittol, Juan Carlos Hurtado, Maryam Ali, Álvar Simarro, Fadiana Prodaño, Maria Sierra, Jordi Vila
195 [GO] mBio 2023―Oct―26 An account of American Academy of Microbiology reforms and pandemic operations Arturo Casadevall, Peggy A. Cotter, Lynn Enquist, Timothy J. Donohue, Stefano Bertuzzi, Nguyen K. Nguyen
196 [GO] Microbiology Spectrum 2023―Oct―25 A novel simian adenovirus-vectored COVID-19 vaccine elicits effective mucosal and systemic immunity in mice by intranasal and intramuscular vaccination regimens Panli Zhang, Shengxue Luo, Peng Zou, Qitao Deng, Cong Wang, Jinfeng Li, et al. (+5)
197 [GO] Journal of Microbiology and Biology Education 2023―Oct―25 Developing scientific literacy with a cyclic independent study assisted CURE detecting SARS-CoV-2 in wastewater Kristine Dye, Lourdes Norman-McKay
198 [GO] mSystems 2023―Oct―24 Methylprednisolone therapy induces differential metabolic trajectories in severe COVID-19 patients Victor I. Mwangi, Rebeca L. A. Netto, Mayla G. S. Borba, Gabriel F. Santos, Gesiane S. Lima, Lucas S. Machado, et al. (+15)
199 [GO] Microbiology Spectrum 2023―Oct―20 Swish and gargle saliva sampling is a patient-friendly and comparable alternative to nasopharyngeal swabs to detect SARS-CoV-2 in outpatient settings for adults and children Sandra Isabel, Justine Cohen-Silver, Hyejung Jung, Bridget Tam, Maya Lota, Marcia Sivilotti, et al. (+6)
200 [GO] Journal of Virology 2023―Oct―20 Mutations in S2 subunit of SARS-CoV-2 Omicron spike strongly influence its conformation, fusogenicity, and neutralization sensitivity Sahil Kumar, Rathina Delipan, Debajyoti Chakraborty, Kawkab Kanjo, Randhir Singh, Nittu Singh, et al. (+8)
201 [GO] Journal of Virology 2023―Oct―20 Blocking of doublecortin-like kinase 1-regulated SARS-CoV-2 replication cycle restores cell signaling network Ram Babu Undi, Nagib Ahsan, Jason L. Larabee, Nicole Darlene-Reuter, James Papin, Samrita Dogra, et al. (+6)
202 [GO] Journal of Virology 2023―Oct―19 Discovery of Nanosota-2, -3, and -4 as super potent and broad-spectrum therapeutic nanobody candidates against COVID-19 Gang Ye, Ruangang Pan, Fan Bu, Jian Zheng, Alise Mendoza, Wei Wen, et al. (+7)
203 [GO] Microbiology Spectrum 2023―Oct―19 Integrating SARS-CoV-2-specific interferon-γ release assay testing in the evaluation of patients hospitalized with COVID-19 Mar Masiá, Alba de la Rica, Marta Fernández-González, José Alberto García, Sergio Padilla, Javier García-Abellán, et al. (+4)
204 [GO] Journal of Virology 2023―Oct―17 Diet-induced obesity and diabetes enhance mortality and reduce vaccine efficacy for SARS-CoV-2 Robert M. Johnson, Jeremy Ardanuy, Holly Hammond, James Logue, Lian Jackson, Lauren Baracco, et al. (+6)
205 [GO] Journal of Virology 2023―Oct―16 DHA and EPA inhibit porcine coronavirus replication by alleviating ER stress Xiaoyi Suo, Jing Wang, Danping Wang, Guoqiang Fan, Mingjun Zhu, Baochao Fan, et al. (+3)
206 [GO] Journal of Virology 2023―Oct―16 Protection of the receptor binding domain (RBD) dimer against SARS-CoV-2 and its variants Yan Wu, Jian Shi, Xiaoxue He, Jia Lu, Xiao Gao, Xuerui Zhu, et al. (+9)
207 [GO] Journal of Virology 2023―Oct―16 Correction for Gao et al., “When Poly(A) Binding Proteins Meet Viral Infections, Including SARS-CoV-2” Jie Gao, Yan-Dong Tang, Wei Hu, Chunfu Zheng
208 [GO] Journal of Virology 2023―Oct―13 SARS-CoV-2 replicates in the human testis with slow kinetics and has no major deleterious effects ex vivo Dominique Mahé, Salomé Bourgeau, Janaina da Silva, Julie Schlederer, Anne-Pascale Satie, Nadège Kuassivi, et al. (+8)
209 [GO] mBio 2023―Oct―13 Tetravalent SARS-CoV-2 S1 subunit protein vaccination elicits robust humoral and cellular immune responses in SIV-infected rhesus macaque controllers Muhammad S. Khan, Eun Kim, Quentin Le Hingrat, Adam Kleinman, Alessandro Ferrari, Jose C. Sammartino, et al. (+10)
210 [GO] Journal of Virology 2023―Oct―13 Distinct motifs in the E protein are required for SARS-CoV-2 virus particle formation and lysosomal deacidification in host cells Koya Miura, Youichi Suzuki, Kotaro Ishida, Masashi Arakawa, Hong Wu, Yoshihiko Fujioka, et al. (+8)
211 [GO] Microbiology Spectrum 2023―Oct―13 Improved detection of infection with SARS-CoV-2 Omicron variants of concern in healthcare workers by a second-generation rapid antigen test Jochen M. Wettengel, Katharina Strehle, Catharina von Lucke, Hedwig Roggendorf, Samuel D. Jeske, Catharina Christa, et al. (+5)
212 [GO] Microbiology Spectrum 2023―Oct―11 Protective efficacy of a candidate live attenuated vaccine derived from the SD-R strain of lineage 1 porcine reproductive and respiratory syndrome virus against a lethal challenge with HP-PRRSV HuN4 in piglets Hongliang Zhang, Chao Li, Hu Xu, Bangjun Gong, Wansheng Li, Zhenyang Guo, et al. (+11)
213 [GO] Microbiology Spectrum 2023―Oct―10 Neglected SARS-CoV-2 variants and potential concerns for molecular diagnostics: a framework for nucleic acid amplification test target site quality assurance Gregory R. McCracken, Daniel Gaston, Janice Pettipas, Allana Loder, Anna Majer, Elsie Grudeski, et al. (+5)
214 [GO] Microbiology Spectrum 2023―Oct―09 The impact of early anti-SARS-CoV-2 antibody production on the length of hospitalization stay among COVID-19 patients Dalziza Victalina de Almeida, Priscila Alves Cezar, Thais Freitas Barreto Fernandes, Marcos Gustavo Araujo Schwarz, Leila Mendonça-Lima, Carmem Beatriz Wagner Giacoia-Gripp, et al. (+16)
215 [GO] Microbiology Spectrum 2023―Oct―09 Inference and forecasting phase shift regime of COVID-19 sub-lineages with a Markov-switching model Eul Noh, Jinwook Hong, Joonkyung Yoo, Jaehun Jung, Miguel Angel Martinez
216 [GO] Microbiology Spectrum 2023―Oct―09 Hundred-fold increase in SARS-CoV-2 spike antibody levels over three years in a hospital clinical laboratory Patrizio Caturegli, Oliver Laeyendecker, Aaron A. R. Tobian, David J. Sullivan, Bar-On Yotam
217 [GO] Microbiology Spectrum 2023―Oct―09 Integration of SARS-CoV-2 testing and genomic sequencing into influenza sentinel surveillance in Uganda, January to December 2022 John T. Kayiwa, Charity Nassuna, Sophia Mulei, Gladys Kiggundu, Joweria Nakaseegu, Maria Nabbuto, et al. (+17)
218 [GO] Antimicrobial Agents and Chemotherapy 2023―Oct―06 Evaluation of in vitro antiviral activity of SARS-CoV-2 M pro inhibitor pomotrelvir and cross-resistance to nirmatrelvir resistance substitutions Xiao Tong, Walter Keung, Lee D. Arnold, Laura J. Stevens, Andrea J. Pruijssers, Seunghyi Kook, et al. (+4)
219 [GO] Microbiology Spectrum 2023―Oct―06 Evolutionary and spatiotemporal analyses reveal multiple introductions and cryptic transmission of SARS-CoV-2 VOC/VOI in Malta Nidia S. Trovao, Vincent Pan, Chirag Goel, Pilar Gallego-García, Yunxi Liu, Christopher Barbara, et al. (+11)
220 [GO] Journal of Virology 2023―Oct―05 Multiple mutations of SARS-CoV-2 Omicron BA.2 variant orchestrate its virological characteristics Izumi Kimura, Daichi Yamasoba, Hesham Nasser, Hayato Ito, Jiri Zahradnik, Jiaqi Wu, et al. (+80)
221 [GO] Microbiology Spectrum 2023―Oct―04 Rapid and sensitive on-site detection of SARS-CoV-2 RNA from environmental surfaces using portable laboratory devices Kouichi Kitamura, Minami Kikuchi Ueno, Hiromu Yoshida, Rebekah M. Martin
222 [GO] Journal of Virology 2023―Sep―29 N-linked glycoproteins and host proteases are involved in swine acute diarrhea syndrome coronavirus entry Ying Chen, Xi Liu, Jiang-Nan Zheng, Li-Jun Yang, Yun Luo, Yu-Lin Yao, et al. (+9)
223 [GO] Journal of Virology 2023―Sep―29 EGR1 functions as a new host restriction factor for SARS-CoV-2 to inhibit virus replication through the E3 ubiquitin ligase MARCH8 Yinghua Zhao, Liyan Sui, Ping Wu, Letian Li, Li Liu, Baohua Ma, et al. (+13)
224 [GO] Journal of Virology 2023―Sep―28 The REEP5/TRAM1 complex binds SARS-CoV-2 NSP3 and promotes virus replication Jie Li, Qi Gui, Feng-Xia Liang, Joseph Sall, Qingyue Zhang, Yatong Duan, et al. (+6)
225 [GO] Microbiology Spectrum 2023―Sep―26 Longitudinal kinetics of neutralizing antibodies against circulating SARS-CoV-2 variants and estimated level of group immunity of booster-vaccinated individuals during omicron-dominated COVID-19 outbreaks in the Republic of Korea, 2022 Young Jae Lee, Ju-yeon Choi, Jinyoung Yang, Jin Yang Baek, Hye-Jin Kim, Su-Hwan Kim, et al. (+14)
226 [GO] Microbiology Spectrum 2023―Sep―22 Tonsils are major sites of persistence of SARS-CoV-2 in children Thais Melquiades de Lima, Ronaldo Bragança Martins, Carolina Sponchiado Miura, Maria Vitória Oliveira Souza, Murilo Henrique Anzolini Cassiano, Tamara Silva Rodrigues, et al. (+19)
227 [GO] Microbiology Spectrum 2023―Sep―22 Distinguishing SARS-CoV-2 infection and vaccine responses up to 18 months post-infection using nucleocapsid protein and receptor-binding domain antibodies Ida Jarlhelt, Laura Pérez-Alós, Rafael Bayarri-Olmos, Cecilie Bo Hansen, Maria Skaalum Petersen, Pál Weihe, et al. (+9)
228 [GO] mSphere 2023―Sep―22 Cell-intrinsic and -extrinsic effects of SARS-CoV-2 RNA on pathogenesis: single-cell meta-analysis Mst Shamima Khatun, T. Parks Remcho, Xuebin Qin, Jay K. Kolls, Andrew Pekosz
229 [GO] Microbiology Spectrum 2023―Sep―22 Alternative molecular and genomic strategies to provide a rapid response to alerts concerning the introduction of new emerging SARS-CoV-2 variants: the Omicron alert Marta Herranz, Sergio Buenestado-Serrano, Javier Martín-Escolano, Andrea Molero-Salinas, Roberto Alonso, Pilar Catalán, et al. (+59)
230 [GO] Journal of Microbiology and Biology Education 2023―Sep―22 Supporting the democratization of science during a pandemic: genomics Course-based Undergraduate Research Experiences (CUREs) as an effective remote learning strategy David Lopatto, S. Catherine Silver Key, Melanie Van Stry, Jamie Siders, Wilson Leung, Katie M. Sandlin, et al. (+91)
231 [GO] Microbiology Spectrum 2023―Sep―20 Disentangling the interactions between nasopharyngeal and gut microbiome and their involvement in the modulation of COVID-19 infection Leonardo Mancabelli, Giuseppe Taurino, Andrea Ticinesi, Tecla Ciociola, Federica Vacondio, Christian Milani, et al. (+14)
232 [GO] Microbiology Spectrum 2023―Sep―20 Performance of the Cue COVID-19 point-of-care molecular test: insights from a multi-site clinic service model Anu Rebbapragada, Lane Cariazo, David Elchuk, Hossam Abdelrahman, Dang Pham, Jerusha Raveendraraj, et al. (+6)
233 [GO] Journal of Virology 2023―Sep―20 Functional comparisons of the virus sensor RIG-I from humans, the microbat Myotis daubentonii , and the megabat Rousettus aegyptiacus , and their response to SARS-CoV-2 infection Andreas Schoen, Martin Hölzer, Marcel A. Müller, Kai B. Wallerang, Christian Drosten, Manja Marz, et al. (+3)
234 [GO] Journal of Clinical Microbiology 2023―Sep―20 Sensitivity of rapid antigen tests against SARS-CoV-2 Omicron and Delta variants Anuradha Rao, Adrianna Westbrook, Leda Bassit, Richard Parsons, Eric Fitts, Morgan Greenleaf, et al. (+18)
235 [GO] Journal of Virology 2023―Sep―19 Determination of the factors responsible for the tropism of SARS-CoV-2-related bat coronaviruses to Rhinolophus bat ACE2 Shigeru Fujita, Yusuke Kosugi, Izumi Kimura, Kenzo Tokunaga, Jumpei Ito, Kei Sato, et al. (+75)
236 [GO] Microbiology Spectrum 2023―Sep―15 A disintegrin and metalloproteinase domain 9 facilitates SARS-CoV-2 entry into cells with low ACE2 expression Ivonne Melano, Wei-Chung Cheng, Li-Lan Kuo, Yuag-Meng Liu, Yu Chi Chou, Mien-Chie Hung, et al. (+4)
237 [GO] Microbiology Spectrum 2023―Sep―14 Canine respiratory coronavirus in Thailand undergoes mutation and evidences a potential putative parent for genetic recombination Panida Poonsin, Vorapun Wiwatvisawakorn, Jira Chansaenroj, Yong Poovorawan, Chutchai Piewbang, Somporn Techangamsuwan, Frederick S. B. Kibenge
238 [GO] Journal of Virology 2023―Sep―14 On a path toward a broad-spectrum anti-viral: inhibition of HIV-1 and coronavirus replication by SR kinase inhibitor harmine Subha Dahal, Kiera Clayton, Tyler Cabral, Ran Cheng, Shahrzad Jahanshahi, Choudhary Ahmed, et al. (+14)
239 [GO] Journal of Virology 2023―Sep―14 Broad-spectrum vaccine via combined immunization routes triggers potent immunity to SARS-CoV-2 and its variants Man Xing, Yihan Wang, Xinyu Wang, Jiaojiao Liu, Weiqian Dai, Gaowei Hu, et al. (+14)
240 [GO] Microbiology Spectrum 2023―Sep―12 Identifying featured indels associated with SARS-CoV-2 fitness Xiang Li, Hongliang Yan, Gary Wong, Wanli Ouyang, Jie Cui, Holly Ramage
241 [GO] Microbiology Spectrum 2023―Sep―11 Identification and characterization of novel alphacoronaviruses in Tadarida brasiliensis (Chiroptera, Molossidae) from Argentina: insights into recombination as a mechanism favoring bat coronavirus cross-species transmission Agustina Cerri, Elisa M. Bolatti, Tomaz M. Zorec, Maria E. Montani, Agustina Rimondi, Lea Hosnjak, et al. (+6)
242 [GO] Journal of Virology 2023―Sep―11 PARP12 is required to repress the replication of a Mac1 mutant coronavirus in a cell- and tissue-specific manner Catherine M. Kerr, Srivatsan Parthasarathy, Nancy Schwarting, Joseph J. O'Connor, Jessica J. Pfannenstiel, Emily Giri, et al. (+4)
243 [GO] mBio 2023―Sep―08 Predicting COVID-19 prognosis in hospitalized patients based on early status David Natanov, Byron Avihai, Erin McDonnell, Eileen Lee, Brennan Cook, Nicole Altomare, et al. (+9)
244 [GO] Journal of Virology 2023―Sep―07 Characterization of the SARS-CoV-2 BA.5.5 and BQ.1.1 Omicron variants in mice and hamsters James Brett Case, Suzanne M. Scheaffer, Tamarand L. Darling, Traci L. Bricker, Lucas J. Adams, Houda H. Harastani, et al. (+6)
245 [GO] Microbiology Spectrum 2023―Sep―07 Analysis of SARS-CoV-2 isolates, namely the Wuhan strain, Delta variant, and Omicron variant, identifies differential immune profiles Shima Shahbaz, Najmeh Bozorgmehr, Julia Lu, Mohammed Osman, Wendy Sligl, D. Lorne Tyrrell, et al. (+2)
246 [GO] Microbiology Spectrum 2023―Sep―07 Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single-cell RNA sequencing Phillip Cohen, Emma J. DeGrace, Oded Danziger, Roosheel S. Patel, Erika A. Barrall, Tesia Bobrowski, et al. (+6)
247 [GO] Microbiology Spectrum 2023―Sep―07 A tool for the cheap and rapid screening of SARS-CoV-2 variants of concern (VoCs) by Sanger sequencing Germán Burgos, Andrés Ambuludí, Diana Morales-Jadán, Miguel Angel Garcia-Bereguiain, Claire Muslin, Vinicio Armijos-Jaramillo, et al. (+12)
248 [GO] Journal of Virology 2023―Sep―07 Structural basis of white-tailed deer, Odocoileus virginianus , ACE2 recognizing all the SARS-CoV-2 variants of concern with high affinity Pu Han, Yumin Meng, Di Zhang, Zepeng Xu, Zhiyuan Li, Xiaoqian Pan, et al. (+7)
249 [GO] Microbiology Resource Announcements 2023―Sep―05 Coding-complete genomes of XBB.1.16, XBB.2.3, FL.4 (alias of XBB., and XBB.3 of SARS-CoV-2 Omicron isolated from Bangladesh Saikt Rahman, Mohammad Tanbir Habib, Mokibul Hassan Afrad, Mahin Hasan, Anika Tahsin, Mohammad Jubair, et al. (+8)
250 [GO] Microbiology Spectrum 2023―Aug―31 SARS-CoV-2 omicron spike simulations: broad antibody escape, weakened ACE2 binding, and modest furin cleavage M. Zaki Jawaid, A. Baidya, R. Mahboubi-Ardakani, Richard L. Davis, Daniel L. Cox, N. Esther Babady
251 [GO] mBio 2023―Aug―25 SARS-CoV-2 ORF8 accessory protein is a virulence factor M. Bello-Perez, J. Hurtado-Tamayo, A. Z. Mykytyn, M. M. Lamers, R. Requena-Platek, D. Schipper, et al. (+8)
252 [GO] Journal of Virology 2023―Aug―21 Characterization of a mouse-adapted strain of bat severe acute respiratory syndrome-related coronavirus Hao-Feng Lin, Mei-Qin Liu, Ren-Di Jiang, Qian-Chun Gong, Jia Su, Zi-Shuo Guo, et al. (+13)
253 [GO] Microbiology Spectrum 2023―Aug―21 SARS-CoV-2 infection severity and mortality is modulated by repeat-mediated regulation of alternative splicing Priyanka Mehta, Partha Chattopadhyay, Varsha Ravi, Bansidhar Tarai, Sandeep Budhiraja, Rajesh Pandey, Yun Young Go
254 [GO] mBio 2023―Aug―15 Pyronaridine tetraphosphate is an efficacious antiviral and anti-inflammatory active against multiple highly pathogenic coronaviruses Jeremy Ardanuy, Robert Johnson, Carly Dillen, Louis Taylor, Holly Hammond, Stuart Weston, et al. (+2)
255 [GO] Journal of Virology 2023―Aug―14 Structural evolution of SARS-CoV-2 omicron in human receptor recognition Wei Zhang, Ke Shi, Qibin Geng, Morgan Herbst, Michael Wang, Linfen Huang, et al. (+5)
256 [GO] Microbiology Spectrum 2023―Aug―11 Importance of genomic surveillance of SARS-CoV-2 in cats during reverse zoonosis events: potential viral evolution may occur Sandra Barroso-Arévalo, Marta Díaz-Frutos, Lucas Domínguez, José M. Sánchez-Vizcaíno, Clinton J. Jones
257 [GO] Journal of Virology 2023―Aug―09 Comparison of SARS-CoV-2 entry inhibitors based on ACE2 receptor or engineered Spike-binding peptides George N. Llewellyn, Hsu-Yu Chen, Geoffrey L. Rogers, Xiaoli Huang, Philip J. Sell, Jill E. Henley, et al. (+2)
258 [GO] Journal of Virology 2023―Aug―09 SARS-CoV-2 Omicron entry is type II transmembrane serine protease-mediated in human airway and intestinal organoid models Anna Z. Mykytyn, Tim I. Breugem, Maarten H. Geurts, Joep Beumer, Debby Schipper, Romy van Acker, et al. (+7)
259 [GO] Microbiology Spectrum 2023―Aug―08 Salivary antibodies induced by BA.4/BA.5-convalescence or bivalent booster Immunoglobulin vaccination protect against novel SARS-COV-2 variants of concern Gabriel Diem, Stefanie Dichtl, Viktoria Zaderer, Cornelia Lass-Flörl, Markus Reindl, Gaia Lupoli, et al. (+8)
260 [GO] mSystems 2023―Aug―07 The intestinal microbiota predicts COVID-19 severity and fatality regardless of hospital feeding method Vanni Bucci, Doyle V. Ward, Shakti Bhattarai, Mayra Rojas-Correa, Ayan Purkayastha, Devon Holler, et al. (+13)
261 [GO] mBio 2023―Aug―03 Tixagevimab/cilgavimab for preventing COVID-19 during the Omicron surge: retrospective analysis of National Veterans Health Administration electronic data Yinong Young-Xu, Lauren Epstein, Vincent C. Marconi, Victoria Davey, Caroline Korves, Gabrielle Zwain, et al. (+5)
262 [GO] mBio 2023―Aug―03 Anamnestic humoral correlates of immunity across SARS-CoV-2 variants of concern Ryan P. McNamara, Jenny S. Maron, Julie Boucau, Vicky Roy, Nicholas E. Webb, Harry L. Bertera, et al. (+16)
263 [GO] Journal of Virology 2023―Jul―28 Ifit2 restricts murine coronavirus spread to the spinal cord white matter and its associated myelin pathology Madhav Sharma, Debanjana Chakravarty, Afaq Hussain, Ajay Zalavadia, Amy Burrows, Patricia Rayman, et al. (+6)
264 [GO] mBio 2023―Jul―28 SARS-CoV-2 infection alters mitochondrial and cytoskeletal function in human respiratory epithelial cells mediated by expression of spike protein Bonnie H. Yeung-Luk, Gitanjali A. Narayanan, Baishakhi Ghosh, Ara Wally, Esther Lee, Michelle Mokaya, et al. (+13)
265 [GO] mSystems 2023―Jul―25 Bayesian sequential approach to monitor COVID-19 variants through test positivity rate from wastewater J. Cricelio Montesinos-López, Maria L. Daza-Torres, Yury E. García, César Herrera, C. Winston Bess, Heather N. Bischel, et al. (+2)
266 [GO] mBio 2023―Jul―21 SARS-CoV-2 nonstructural protein 6 from Alpha to Omicron: evolution of a transmembrane protein Shuchen Feng, Amornrat O'Brien, Da-Yuan Chen, Mohsan Saeed, Susan C. Baker, J. S. Malik Peiris
267 [GO] Journal of Clinical Microbiology 2023―Jul―19 Postpandemic Effects of COVID-19 Shelter-in-Place Orders on the Gastrointestinal Pathogen Landscape Philip L. Bulterys, Nicole Y. Leung, Atif Saleem, Indre Budvytiene, Benjamin A. Pinsky, Niaz Banaei, Randall Hayden
268 [GO] mBio 2023―Jul―13 SARS-CoV-2 main protease cleaves MAGED2 to antagonize host antiviral defense Xiaohui Ju, Ziqiao Wang, Pengcheng Wang, Wenlin Ren, Yanying Yu, Yin Yu, et al. (+10)
269 [GO] mBio 2023―Jul―12 Bidirectional interplay between SARS-CoV-2 and autophagy Hao Zhou, Zhiqiang Hu, Sergio Castro-Gonzalez, Vinayaka R. Prasad
270 [GO] mSystems 2023―Jul―11 Paired associated SARS-CoV-2 spike variable positions: a network analysis approach to emerging variants Yiannis Manoussopoulos, Cleo Anastassopoulou, John P. A. Ioannidis, Athanasios Tsakris, Ileana M. Cristea
271 [GO] Microbiology Spectrum 2023―Jul―11 Unveiling a New Perspective on Distinguishing Omicron Breakthrough Cases and Postimmune COVID-19-Naive Individuals: Insights from Antibody Profiles Shihan Zhang, Chen Dong, Qian Zhen, Chao Shi, Hua Tian, Chuchu Li, et al. (+13)
272 [GO] Microbiology Spectrum 2023―Jul―10 Breadth and Durability of SARS-CoV-2-Specific T Cell Responses following Long-Term Recovery from COVID-19 Thi Thu Thao Dang, Alitzel Anzurez, Kaori Nakayama-Hosoya, Shoji Miki, Kazuo Yamashita, Mark de Souza, et al. (+3)
273 [GO] Microbiology Spectrum 2023―Jul―10 Determining the Time of Booster Dose Based on the Half-Life and Neutralization Titers against SARS-CoV-2 Variants of Concern in Fully Vaccinated Individuals Yu-Ching Dai, Yen-Chia Lin, Lauren L. Ching, Jih-Jin Tsai, Kyle Ishikawa, Wen-Yang Tsai, et al. (+4)
274 [GO] Microbiology Spectrum 2023―Jul―06 Molecular Diversity of Human Respiratory Syncytial Virus before and during the COVID-19 Pandemic in Two Neighboring Japanese Cities Takashi Ono, Koichi Hashimoto, Yohei Kume, Mina Chishiki, Hisao Okabe, Masatoki Sato, et al. (+15)
275 [GO] mSphere 2023―Jul―06 Development of monoclonal antibody-based blocking ELISA for detecting SARS-CoV-2 exposure in animals Fangfeng Yuan, Chi Chen, Lina M. Covaleda, Mathias Martins, Jennifer M. Reinhart, Drew R. Sullivan, et al. (+3)
276 [GO] Applied and Environmental Microbiology 2023―Jul―05 Variability in Donor Lung Culture and Relative Humidity Impact the Stability of 2009 Pandemic H1N1 Influenza Virus on Nonporous Surfaces Zhihong Qian, Dylan H. Morris, Annika Avery, Karen A. Kormuth, Valerie Le Sage, Michael M. Myerburg, et al. (+4)
277 [GO] Journal of Clinical Microbiology 2023―Jul―03 Comparison of an ID NOW COVID-19 Assay Used at the Point of Care to Laboratory-Based Nucleic Acid Amplification Tests David Payne, Channyn Williams, Justin Jacob, Shelby Chastain-Potts, Michael Adjei, Berihun Taye, et al. (+4)
278 [GO] Journal of Clinical Microbiology 2023―Jul―03 RADx-UP Testing Core: Access to COVID-19 Diagnostics in Community-Engaged Research with Underserved Populations Shanti Narayanasamy, Timothy H. Veldman, Mark J. Lee, William A. Glover, L. Gayani Tillekeratne, Coralei E. Neighbors, et al. (+13)
279 [GO] Microbiology Spectrum 2023―Jul―03 Porcine Epidemic Diarrhea Virus, Surrogate for Coronavirus Decay Measurement in French Coastal Waters and Contribution to Coronavirus Risk Evaluation Maud Contrant, Lionel Bigault, Mathieu Andraud, Marion Desdouits, Sophie Rocq, Françoise S. Le Guyader, et al. (+2)
280 [GO] Microbiology Spectrum 2023―Jul―03 Broadly Effective ACE2 Decoy Proteins Protect Mice from Lethal SARS-CoV-2 Infection Mengjia Lu, Weitong Yao, Yujun Li, Danting Ma, Zhaoyong Zhang, Haimin Wang, et al. (+9)
281 [GO] mBio 2023―Jun―30 Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data A. E. Roder, K. E. E. Johnson, M. Knoll, M. Khalfan, B. Wang, S. Schultz-Cherry, et al. (+16)
282 [GO] mBio 2023―Jun―29 Restriction of SARS-CoV-2 replication by receptor transporter protein 4 (RTP4) Ramanjit Kaur, Takuya Tada, Nathaniel Roy Landau, Ronald Swanstrom
283 [GO] mBio 2023―Jun―29 Adaptive variations in SARS-CoV-2 spike proteins: effects on distinct virus-cell entry stages Enya Qing, Tom Gallagher, Kanta Subbarao
284 [GO] mBio 2023―Jun―28 mLST8 is essential for coronavirus replication and regulates its replication through the mTORC1 pathway Yanan Fu, Zhen Fu, Zhelin Su, Lisha Li, Yilin Yang, Yubei Tan, et al. (+7)
285 [GO] mBio 2023―Jun―28 SARS-CoV-2 ORF6 protein does not antagonize interferon signaling in respiratory epithelial Calu-3 cells during infection Minghua Li, Kasirajan Ayyanathan, Mark Dittmar, Jesse Miller, Iulia Tapescu, Jae Seung Lee, et al. (+7)
286 [GO] Microbiology Spectrum 2023―Jun―27 Rapid Establishment of a Biospecimen Resource To Study the Global Impact of COVID-19 Vaccines K. E. Berliner, T. Ezzelle, T. Klenk, G. Dunn, J. Sischo, D. Campbell, et al. (+2)
287 [GO] Journal of Virology 2023―Jun―27 Identification of a 1.4-kb-Long Sequence Located in the nsp12 and nsp13 Coding Regions of SARS-CoV-2 Genomic RNA That Mediates Efficient Viral RNA Packaging Kaori Terasaki, Krishna Narayanan, Shinji Makino, Tom Gallagher
288 [GO] Microbiology Spectrum 2023―Jun―27 Wnt-Independent SARS-CoV-2 Infection in Pulmonary Epithelial Cells Alexey Koval, Jiabin Xu, Nathalia Williams, Mirco Schmolke, Karl-Heinz Krause, Vladimir L. Katanaev, Alison Sinclair
289 [GO] Applied and Environmental Microbiology 2023―Jun―27 Efficacy of Peracetic Acid and Sodium Hypochlorite against SARS-CoV-2 on Contaminated Surfaces J. N. Morris, M. A. Esseili, Christopher A. Elkins
290 [GO] mBio 2023―Jun―23 SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication Christina A. Higgins, Benjamin E. Nilsson-Payant, Boris Bonaventure, Andrew P. Kurland, Chengjin Ye, Tomer M. Yaron, et al. (+11)
291 [GO] Journal of Virology 2023―Jun―23 SARS-CoV-2 nsp13 Restricts Episomal DNA Transcription without Affecting Chromosomal DNA Aixin Li, Bei Zhang, Kaitao Zhao, Zhinang Yin, Yan Teng, Lu Zhang, et al. (+5)
292 [GO] Microbiology Spectrum 2023―Jun―22 Evaluation of Ortho VITROS and Roche Elecsys S and NC Immunoassays for SARS-CoV-2 Serosurveillance Applications Hasan Sulaeman, Eduard Grebe, Honey Dave, Lily McCann, Clara Di Germanio, Aditi Sanghavi, et al. (+10)
293 [GO] Microbiology Spectrum 2023―Jun―20 A Phase 2 Randomized Trial Evaluating the Antiviral Activity and Safety of the Direct-Acting Antiviral Bemnifosbuvir in Ambulatory Patients with Mild or Moderate COVID-19 (MOONSONG Study) Marta Boffito, Eamon Dolan, Karishma Singh, William Holmes, Steffen Wildum, Arantxa Horga, et al. (+6)
294 [GO] mBio 2023―Jun―20 A mutation in the coronavirus nsp13-helicase impairs enzymatic activity and confers partial remdesivir resistance Samantha L. Grimes, Young J. Choi, Anoosha Banerjee, Gabriel Small, Jordan Anderson-Daniels, Jennifer Gribble, et al. (+8)
295 [GO] mSphere 2023―Jun―20 Longitudinal and quantitative fecal shedding dynamics of SARS-CoV-2, pepper mild mottle virus, and crAssphage Peter J. Arts, J. Daniel Kelly, Claire M. Midgley, Khamal Anglin, Scott Lu, Glen R. Abedi, et al. (+18)
296 [GO] Microbiology Spectrum 2023―Jun―15 Glycosylated, Lipid-Binding, CDR-Like Domains of SARS-CoV-2 ORF8 Indicate Unique Sites of Immune Regulation Fang Wu, Xin Chen, Yanhong Ma, Yuzhe Wu, Rui Li, Yuanwei Huang, et al. (+6)
297 [GO] Microbiology Spectrum 2023―Jun―14 Daily SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious People Due to Viral Load Differences among Specimen Types Alexander Viloria Winnett, Reid Akana, Natasha Shelby, Hannah Davich, Saharai Caldera, Taikun Yamada, et al. (+11)
298 [GO] mSystems 2023―Jun―14 High-sensitivity profiling of SARS-CoV-2 noncoding region-host protein interactome reveals the potential regulatory role of negative-sense viral RNA Liuyiqi Jiang, Mu Xiao, Qing-Qing Liao, Luqian Zheng, Chunyan Li, Yuemei Liu, et al. (+5)
299 [GO] mSystems 2023―Jun―13 Diversity, composition, and networking of saliva microbiota distinguish the severity of COVID-19 episodes as revealed by an analysis of 16S rRNA variable V1-V3 region sequences Violeta Larios Serrato, Beatriz Meza, Carolina Gonzalez-Torres, Javier Gaytan-Cervantes, Joaquín González Ibarra, Clara Esperanza Santacruz Tinoco, et al. (+14)
300 [GO] Applied and Environmental Microbiology 2023―Jun―13 Combined Infection Control Interventions Protect Essential Food Workers from Occupational Exposures to SARS-CoV-2 in the Agricultural Environment D. Kane Cooper, Julia S. Sobolik, Jovana Kovacevic, Channah M. Rock, Elizabeth T. Sajewski, Jodie L. Guest, et al. (+4)
301 [GO] Microbiology Resource Announcements 2023―Jun―13 Complete Coding Sequence of a Lineage AY.122 SARS-CoV-2 Virus Strain Detected in Kazakhstan Bekbolat Usserbayev, Yergali Abduraimov, Nurlan Kozhabergenov, Aibarys Melisbek, Meirzhan Shirinbekov, Manar Smagul, et al. (+4)
302 [GO] mBio 2023―Jun―12 The unfolded protein response components IRE1α and XBP1 promote human coronavirus infection Jessica M. Oda, Andreas B. den Hartigh, Shoen M. Jackson, Ana R. Tronco, Susan L. Fink, Sara Cherry, Matthew B. Frieman
303 [GO] Microbiology Spectrum 2023―Jun―12 Digital PCR Discriminates between SARS-CoV-2 Omicron Variants and Immune Escape Mutations Steven C. Holland, LaRinda A. Holland, Matthew F. Smith, Mihyun B. Lee, James C. Hu, Efrem S. Lim, Salika M. Shakir
304 [GO] Microbiology Spectrum 2023―Jun―12 A Novel Conserved Linear Neutralizing Epitope on the Receptor-Binding Domain of the SARS-CoV-2 Spike Protein Rong-Hong Hua, Shu-Jian Zhang, Bei Niu, Jin-Ying Ge, Ting Lan, Zhi-Gao Bu, Bo Zhang
305 [GO] Journal of Virology 2023―Jun―12 Erratum for Wang et al., “A Nanobody Targeting Viral Nonstructural Protein 9 Inhibits Porcine Reproductive and Respiratory Syndrome Virus Replication” Lizhen Wang, Lu Zhang, Baicheng Huang, Kuokuo Li, Gaopeng Hou, Qin Zhao, et al. (+7)
306 [GO] mBio 2023―Jun―09 Mild SARS-CoV-2 infection results in long-lasting microbiota instability Vaibhav Upadhyay, Rahul K. Suryawanshi, Preston Tasoff, Maria McCavitt-Malvido, Renuka G. Kumar, Victoria Wong Murray, et al. (+11)
307 [GO] Microbiology Spectrum 2023―Jun―08 A Saliva-Based Serological and Behavioral Analysis of SARS-CoV-2 Antibody Prevalence in Howard County, Maryland Alan C. Brown, Phillip T. Koshute, Hannah P. Cowley, Michael S. Robinette, Sarah R. Gravelyn, Shraddha V. Patel, et al. (+12)
308 [GO] Microbiology Spectrum 2023―Jun―08 Diminished Neutralization Capacity of SARS-CoV-2 Omicron BA.1 in Donor Plasma Collected from January to March 2021 Yi-Chan J. Lin, David H. Evans, Ninette F. Robbins, Guillermo Orjuela, Kento T. Abe, Bhavisha Rathod, et al. (+7)
309 [GO] Microbiology Spectrum 2023―Jun―07 Seroprevalence of COVID-19 in Oran: Cross-Sectional Study Abdessamad Dali-Ali, Dalia Kheira Derkaoui, Mohamed Zina, Asmaa Oukebdane, Rosemary C. She
310 [GO] Microbiology Spectrum 2023―Jun―06 Comparative Analysis of Antimicrobial Antibodies between Mild and Severe COVID-19 Ji Qiu, Anna Engelbrektson, Lusheng Song, Jin Park, Vel Murugan, Stacy Williams, et al. (+13)
311 [GO] Antimicrobial Agents and Chemotherapy 2023―Jun―06 Frequent Emergence of Resistance Mutations Following Complex Intra-Host Genomic Dynamics in SARS-CoV-2 Patients Receiving Sotrovimab Rosalía Palomino-Cabrera, Francisco Tejerina, Andrea Molero-Salinas, María Ferris, Cristina Veintimilla, Pilar Catalán, et al. (+61)
312 [GO] Microbiology Spectrum 2023―Jun―05 A Customized Novel Blocking ELISA for Detection of Bat-Origin Swine Acute Diarrhea Syndrome Coronavirus Infection Liyan Cao, Xiangyu Kong, Xiangtong Li, Xuepeng Suo, Yueyue Duan, Cong Yuan, et al. (+4)
313 [GO] mBio 2023―Jun―05 SARS-CoV-2 within-host diversity of human hosts and its implications for viral immune evasion Binbin Xi, Xi Zeng, Zixi Chen, Jiong Zeng, Lizhen Huang, Hongli Du, Chunfu Zheng
314 [GO] Journal of Microbiology and Biology Education 2023―Jun―01 Promoting RAPID Vaccine Science Education at the Onset of the COVID-19 Pandemic Davida S. Smyth, Trace Jordan, Robert Seiser, Meghan Moran, Ulla Hasager, Sheryl Sorby, et al. (+4)
315 [GO] Microbiology Spectrum 2023―Jun―01 SARS-CoV-2 Co-Infections and Recombinations Identified by Long-Read Single-Molecule Real-Time Sequencing Pauline Trémeaux, Justine Latour, Noémie Ranger, Vénicia Ferrer, Agnès Harter, Romain Carcenac, et al. (+6)
316 [GO] Journal of Virology 2023―May―31 Activation of the NLRP1 Inflammasome and Its Role in Transmissible Gastroenteritis Coronavirus Infection Haojie He, Wenzhe Wang, Liang Li, Xin Zhang, Hongyan Shi, Jianfei Chen, et al. (+4)
317 [GO] Clinical Microbiology Reviews 2023―May―30 Erratum for Nyaruaba et al., “Digital PCR Applications in the SARS-CoV-2/COVID-19 Era: a Roadmap for Future Outbreaks” Raphael Nyaruaba, Caroline Mwaliko, David Dobnik, Pavel Neužil, Patrick Amoth, Matilu Mwau, et al. (+3)
318 [GO] Microbiology Resource Announcements 2023―May―24 Coding-Complete Genome Sequences of an Omicron Subvariant (BA.5.2.20) of SARS-CoV-2 Zineb Rhazzar, Mouhssine Hemlali, Marouane Melloul, Maha Ouarab, Omar Nyabi, Mostafa Elouennass, et al. (+5)
319 [GO] Microbiology Spectrum 2023―May―24 Efficient Direct and Limited Environmental Transmission of SARS-CoV-2 Lineage B.1.22 in Domestic Cats Nora M. Gerhards, Jose L. Gonzales, Sandra Vreman, Lars Ravesloot, Judith M. A. van den Brand, Harmen P. Doekes, et al. (+6)
320 [GO] Microbiology Spectrum 2023―May―22 Multicenter Diagnostic Evaluation of OnSite COVID-19 Rapid Test (CTK Biotech) among Symptomatic Individuals in Brazil and the United Kingdom Caitlin R. Thompson, Pablo Muñoz Torres, Konstantina Kontogianni, Rachel L. Byrne, Saidy Vásconez Noguera, Alessandra Luna-Muschi, et al. (+51)
321 [GO] Microbiology Spectrum 2023―May―22 Honokiol Inhibits SARS-CoV-2 Replication in Cell Culture at a Post-Entry Step Clarisse Salgado-Benvindo, Anouk A. Leijs, Melissa Thaler, Ali Tas, Jack L. Arbiser, Eric J. Snijder, et al. (+2)
322 [GO] Microbiology Spectrum 2023―May―18 Spike-Independent Infection of Human Coronavirus 229E in Bat Cells Marcus G. Mah, Martin Linster, Dolyce H. W. Low, Yan Zhuang, Jayanthi Jayakumar, Firdaus Samsudin, et al. (+6)
323 [GO] Journal of Virology 2023―May―18 The Highly Conserved Stem-Loop II Motif Is Dispensable for SARS-CoV-2 Hongbing Jiang, Astha Joshi, Tianyu Gan, Andrew B. Janowski, Chika Fujii, Traci L. Bricker, et al. (+13)
324 [GO] Microbiology Spectrum 2023―May―18 SARS-CoV-2 Nucleocapsid Protein Is a Potential Therapeutic Target for Anticoronavirus Drug Discovery Austin Royster, Songyang Ren, Yutian Ma, Melissa Pintado, Eunice Kahng, Sean Rowan, et al. (+3)
325 [GO] Microbiology Spectrum 2023―May―18 The Influence of Adjuvant Type on the Immunogenicity of RBD/N Cocktail Antigens as a Vaccine Candidate against SARS-CoV-2 Virus Gabriela Brzuska, Marta Zimna, Klaudia Baranska, Boguslaw Szewczyk, Petra Strakova, Daniel Ruzek, et al. (+2)
326 [GO] Microbiology Spectrum 2023―May―16 Antibody Response to the BA.5 Bivalent Vaccine Shot: a Two-Year Follow-Up Study following Initial COVID-19 mRNA Vaccination Yosuke Hirotsu, Hiroki Sugiura, Mika Takatori, Hitoshi Mochizuki, Masao Omata, Takamasa Ueno
327 [GO] Microbiology Spectrum 2023―May―16 Molecular Characterization of the Convergent Carbapenem-Resistant and Hypervirulent Klebsiella pneumoniae Strain K1-ST23, Collected in Chile during the COVID-19 Pandemic Felipe Morales-León, Maximiliano Matus-Köhler, Pablo Araya-Vega, Felipe Aguilera, Ignacio Torres, Rodrigo Vera, et al. (+6)
328 [GO] Microbiology Spectrum 2023―May―16 Assay Harmonization Study To Measure Immune Response to SARS-CoV-2 Infection and Vaccines: a Serology Methods Study Troy J. Kemp, Heidi A. Hempel, Yuanji Pan, Daisy Roy, James Cherry, Douglas R. Lowy, et al. (+2)
329 [GO] Microbiology Spectrum 2023―May―16 The Principles of SARS-CoV-2 Intervariant Competition Are Exemplified in the Pre-Omicron Era of the Colombian Epidemic Gregory S. Orf, Lester J. Pérez, Karl Ciuoderis, Andrés Cardona, Simón Villegas, Juan P. Hernández-Ortiz, et al. (+6)
330 [GO] Microbiology Spectrum 2023―May―16 Serodominant SARS-CoV-2 Nucleocapsid Peptides Map to Unstructured Protein Regions Jacob P. Vandervaart, Nicole L. Inniss, Ted Ling-Hu, George Minasov, Grant Wiersum, Monica Rosas-Lemus, et al. (+6)
331 [GO] Microbiology Spectrum 2023―May―16 Immunization with Recombinant Accessory Protein-Deficient SARS-CoV-2 Protects against Lethal Challenge and Viral Transmission Chengjin Ye, Jun-Gyu Park, Kevin Chiem, Piyush Dravid, Anna Allué-Guardia, Andreu Garcia-Vilanova, et al. (+9)
332 [GO] Journal of Virology 2023―May―16 Identification and Analysis of Monoclonal Antibodies with Neutralizing Activity against Diverse SARS-CoV-2 Variants Hanako Ishimaru, Mitsuhiro Nishimura, Lidya Handayani Tjan, Silvia Sutandhio, Maria Istiqomah Marini, Gema Barlian Effendi, et al. (+16)
333 [GO] Microbiology Spectrum 2023―May―16 Rapid Detection of Predominant SARS-CoV-2 Variants Using Multiplex High-Resolution Melting Analysis Liying Sun, Liqin Wang, Chi Zhang, Yan Xiao, Lulu Zhang, Ziyuan Zhao, et al. (+3)
334 [GO] Applied and Environmental Microbiology 2023―May―15 Rapid Virucidal Activity of Japanese Saxifraga Species-Derived Condensed Tannins against SARS-CoV-2, Influenza A Virus, and Human Norovirus Surrogate Viruses Toshihiro Murata, Dulamjav Jamsransuren, Sachiko Matsuda, Haruko Ogawa, Yohei Takeda, Karyn N. Johnson
335 [GO] Microbiology Spectrum 2023―May―11 A Reagent and Virus Benchmarking Panel for a Uniform Analytical Performance Assessment of N Antigen-Based Diagnostic Tests for COVID-19 Allison Golden, Jason L. Cantera, Lorraine Lillis, Thanh T. Phan, Hannah Slater, Edwin J. Webb, et al. (+4)
336 [GO] Microbiology Spectrum 2023―May―11 Robust Vaccine-Induced as Well as Hybrid B- and T-Cell Immunity across SARS-CoV-2 Vaccine Platforms in People with HIV Myrthe L. Verburgh, Lisa van Pul, Marloes Grobben, Anders Boyd, Ferdinand W. N. M. Wit, Ad C. van Nuenen, et al. (+80)
337 [GO] Microbiology Spectrum 2023―May―10 SARS-CoV-2 S1 Subunit Booster Vaccination Elicits Robust Humoral Immune Responses in Aged Mice Eun Kim, Muhammad S. Khan, Alessandro Ferrari, Shaohua Huang, Josè C. Sammartino, Elena Percivalle, et al. (+5)
338 [GO] Microbiology Spectrum 2023―May―09 Comprehensive, Comparative Evaluation of 35 Manual SARS-CoV-2 Serological Assays Wayne Dimech, Shannon Curley, Lorenzo Subissi, Ute Ströher, Mark D. Perkins, Jane Cunningham, Oliver Laeyendecker
339 [GO] Microbiology Spectrum 2023―May―08 The Nucleocapsid Proteins of SARS-CoV-2 and Its Close Relative Bat Coronavirus RaTG13 Are Capable of Inhibiting PKR- and RNase L-Mediated Antiviral Pathways Kyle LeBlanc, Jessie Lynch, Christine Layne, Robert Vendramelli, Angela Sloan, Nikesh Tailor, et al. (+7)
340 [GO] Microbiology Spectrum 2023―May―08 Efficient SARS-CoV-2 Surveillance during the Pandemic-Endemic Transition Using PCR-Based Genotyping Assays Lianne Koets, Karin van Leeuwen, Maaike Derlagen, Jalenka van Wijk, Nadia Keijzer, Jelena D. M. Feenstra, et al. (+5)
341 [GO] Microbiology Spectrum 2023―May―04 A Multicenter Randomized Controlled Trial To Evaluate the Efficacy and Safety of Nelfinavir in Patients with Mild COVID-19 Taiga Miyazaki, Naoki Hosogaya, Yuri Fukushige, Sachiko Takemori, Shinpei Morimoto, Hiroshi Yamamoto, et al. (+34)
342 [GO] Microbiology Resource Announcements 2023―May―03 Complete Genome Sequence of a Bovine Coronavirus Isolated from a Goat in Pennsylvania, USA Shubhada K. Chothe, Maurice Byukusenge, Manoj K. Sekhwal, Lingling Li, Lindsey Cecelia LaBella, Padmaja Jakka, et al. (+9)
343 [GO] Journal of Virology 2023―May―03 Coronavirus Porcine Epidemic Diarrhea Virus Utilizes Chemokine Interleukin-8 to Facilitate Viral Replication by Regulating Ca 2+ Flux Xuyang Guo, Yingtong Feng, Xiaojing Zhao, Shuang Qiao, Zhiqian Ma, Zhiwei Li, et al. (+3)
344 [GO] Journal of Virology 2023―May―03 Single-Virus Fusion Measurements Reveal Multiple Mechanistically Equivalent Pathways for SARS-CoV-2 Entry Anjali Sengar, Marcos Cervantes, Sai T. Bondalapati, Tobin Hess, Peter M. Kasson, Kanta Subbarao
345 [GO] Microbiology Resource Announcements 2023―May―01 Erratum for Rondeau et al., “Accessible and Validated Processing of SARS-CoV-2 from Wastewater” Nicole C. Rondeau, Oliver J. Rose, Lina A. Ariyan, Brian J. Mailloux, JJ L. Miranda
346 [GO] Journal of Clinical Microbiology 2023―Apr―26 Role of Spillover and Spillback in SARS-CoV-2 Transmission and the Importance of One Health in Understanding the Dynamics of the COVID-19 Pandemic McKenzie N. Sparrer, Natasha F. Hodges, Tyler Sherman, Susan VandeWoude, Angela M. Bosco-Lauth, Christie E. Mayo, Romney M. Humphries
347 [GO] Microbiology Spectrum 2023―Apr―26 Carryover Contamination-Controlled Amplicon Sequencing Workflow for Accurate Qualitative and Quantitative Detection of Pathogens: a Case Study on SARS-CoV-2 Lifen Gao, Lun Li, Bin Fang, Zhiwei Fang, Yanghai Xiang, Min Zhang, et al. (+9)
348 [GO] Microbiology Spectrum 2023―Apr―25 COVID-19 Antigen Results Correlate with the Quantity of Replication-Competent SARS-CoV-2 in a Cross-Sectional Study of Ambulatory Adults during the Delta Wave Yuan-Po Tu, Christopher Green, Linhui Hao, Alexander L. Greninger, Jennifer F. Morton, Heather A. Sights, et al. (+3)
349 [GO] Journal of Virology 2023―Apr―25 Identification and Comparison of the Sialic Acid-Binding Domain Characteristics of Avian Coronavirus Infectious Bronchitis Virus Spike Protein Renrong You, Kangchengyin Liu, Min Huang, Lihua Tang, Xuehui Zhang, Yahui Huang, et al. (+5)
350 [GO] Microbiology Spectrum 2023―Apr―25 Optimization and Improvement of qPCR Detection Sensitivity of SARS-CoV-2 in Saliva Hui-Ying Ko, Yao-Tsun Li, Ya-Yuan Li, Ming-Tsai Chiang, Yi-Ling Lee, Wen-Chun Liu, et al. (+4)
351 [GO] Journal of Clinical Microbiology 2023―Apr―24 Prospective Performance Evaluation of the miDiagnostics COVID-19 PCR Test for Rapid SARS-CoV-2 Detection on Nasopharyngeal Swabs David A. G. Bos, Katrien Lagrou, Jan Y. Verbakel, Elitza S. Theel
352 [GO] Microbiology Spectrum 2023―Apr―24 Diagnostic Performance and Tolerability of Saliva and Nasopharyngeal Swab Specimens in the Detection of SARS-CoV-2 by RT-PCR Jaakko Ahti, Riikka Österback, Anniina Keskitalo, Kati Mokkala, Siina Vidbäck, Ville Veikkolainen, et al. (+6)
353 [GO] Microbiology Spectrum 2023―Apr―24 SARS-CoV-2 Outbreak Investigation Using Contact Tracing and Whole-Genome Sequencing in an Ontario Tertiary Care Hospital Kara K. Tsang, Shehryar Ahmad, Alanoud Aljarbou, Mohammed Al Salem, Sheridan J. C. Baker, Emily M. Panousis, et al. (+11)
354 [GO] Microbiology Spectrum 2023―Apr―24 The Environmental Stability of SARS-CoV-2 Variants Omicron BA.1 and BA.5 on the Surfaces of Widely Used Transport Packaging Materials Bei Wang, Lan Chen, Hongtao Sui, Xiaojing Dong, He Huang, Xinming Wang, et al. (+8)
355 [GO] Microbiology Spectrum 2023―Apr―20 MARCO Inhibits Porcine Reproductive and Respiratory Syndrome Virus Infection through Intensifying Viral GP5-Induced Apoptosis Xiaoxiao Zhang, Yongjie Chen, Songbei Li, Jinling Wang, Zhan He, Jiecong Yan, et al. (+3)
356 [GO] mBio 2023―Apr―19 Generation and Functional Analysis of Defective Viral Genomes during SARS-CoV-2 Infection Terry Zhou, Nora J. Gilliam, Sizhen Li, Simone Spandau, Raven M. Osborn, Sarah Connor, et al. (+9)
357 [GO] mBio 2023―Apr―19 Rational Discourse on Virology and Pandemics David Bahry
358 [GO] mSphere 2023―Apr―18 Longitudinal Follow-Up of the Immunity to SARS-CoV-2 in Health Care Workers in Argentina: Persistence of Humoral Response and Neutralizing Capacity after Sputnik V Vaccination Eliana F. Castro, Julián Acosta, Lucía Moriena, Mayra Rios Medrano, Malena Tejerina Cibello, Eduardo Codino, et al. (+4)
359 [GO] Journal of Clinical Microbiology 2023―Apr―18 Pandemic Demand for SARS-CoV-2 Testing Led to Critical Supply and Workforce Shortages in U.S. Clinical and Public Health Laboratories Nancy E. Cornish, Laura H. Bachmann, Daniel J. Diekema, L. Clifford McDonald, Peggy McNult, Jonathan Stevens-Garcia, et al. (+3)
360 [GO] mBio 2023―Apr―13 Deficient Phagocytosis in Circulating Monocytes from Patients with COVID-19-Associated Mucormycosis Bishnu Prasad Sinha, Priyanka Mehta, Md Asmaul Hoque, Purbita Bandopadhyay, Ayandip Nandi, Ipsita Saha, et al. (+8)
361 [GO] Microbiology Spectrum 2023―Apr―12 Isolation of Carbapenem and Colistin Resistant Gram-Negative Bacteria Colonizing Immunocompromised SARS-CoV-2 Patients Admitted to Some Libyan Hospitals Khouloud Slimene, Asrra A. Ali, Elhussan A. Mohamed, Allaaeddin El Salabi, Faraj S. Suliman, Agela A. Elbadri, et al. (+6)
362 [GO] mBio 2023―Apr―11 COVID-19 Serology Data Provide Guidance for Future Deployments of Convalescent Plasma David Sullivan, Arturo Casadevall
363 [GO] Journal of Virology 2023―Apr―11 SARS-CoV-2 Infection of Human Neurons Is TMPRSS2 Independent, Requires Endosomal Cell Entry, and Can Be Blocked by Inhibitors of Host Phosphoinositol-5 Kinase Pinja Kettunen, Angelina Lesnikova, Noora Räsänen, Ravi Ojha, Leena Palmunen, Markku Laakso, et al. (+10)
364 [GO] Journal of Virology 2023―Apr―11 The Papain-Like Protease of Porcine Reproductive and Respiratory Syndrome Virus Impedes STING Translocation from the Endoplasmic Reticulum to the Golgi Apparatus by Deubiquitinating STIM1 Feifei Diao, Juan Bai, Chenlong Jiang, Yangyang Sun, Yanni Gao, Hans Nauwynck, et al. (+3)
365 [GO] Microbiology Spectrum 2023―Apr―10 Persistence of Pneumococcal Carriage among Older Adults in the Community despite COVID-19 Mitigation Measures Anne L. Wyllie, Sidiya Mbodj, Darani A. Thammavongsa, Maikel S. Hislop, Devyn Yolda-Carr, Pari Waghela, et al. (+15)
366 [GO] mBio 2023―Apr―10 SARS-CoV-2 Variant Pathogenesis Following Primary Infection and Reinfection in Syrian Hamsters Jessica Plunkard, Kathleen Mulka, Ruifeng Zhou, Patrick Tarwater, William Zhong, Margaret Lowman, et al. (+5)
367 [GO] Microbiology Spectrum 2023―Apr―06 SARS-CoV-2 Inhibits NRF2-Mediated Antioxidant Responses in Airway Epithelial Cells and in the Lung of a Murine Model of Infection Yue Qu, Aline Haas de Mello, Dorothea R. Morris, Yava L. Jones-Hall, Teodora Ivanciuc, Rachel A. Sattler, et al. (+5)
368 [GO] Microbiology Spectrum 2023―Apr―06 Intertwined Dysregulation of Ribosomal Proteins and Immune Response Delineates SARS-CoV-2 Vaccination Breakthroughs Ranjeet Maurya, Uzma Shamim, Pallavi Mishra, Aparna Swaminathan, Aakarshan Raina, Bansidhar Tarai, et al. (+3)
369 [GO] Microbiology Spectrum 2023―Apr―03 Regional Evaluation of Two SARS-CoV-2 Antigen Rapid Diagnostic Tests in East Africa Muna Affara, Hakim Idris Lagu, Emmanuel Achol, Neema Omari, Grace Ochido, Eric Kezakarayagwa, et al. (+24)
370 [GO] mBio 2023―Apr―03 Evolution of Immune Evasion and Host Range Expansion by the SARS-CoV-2 B.1.1.529 (Omicron) Variant Wenlin Ren, Yu Zhang, Juhong Rao, Ziyi Wang, Jun Lan, Kunpeng Liu, et al. (+9)
371 [GO] Microbiology Spectrum 2023―Mar―30 Amuvatinib Blocks SARS-CoV-2 Infection at the Entry Step of the Viral Life Cycle Trang T. X. Huynh, Thuy X. Pham, Gun-Hee Lee, Jae-Bong Lee, Sung-Geun Lee, Dongseob Tark, et al. (+3)
372 [GO] Microbiology Spectrum 2023―Mar―28 Diagnostic Sensitivity of Saliva and Other Respiratory Tract Samples of SARS-CoV-2 Variants in Patients with COVID-19 Merlin Jayalal Lawrence Panchali, Choon-Mee Kim, Yu-Mi Lee, Jun-Won Seo, Da Young Kim, Na Ra Yun, et al. (+2)
373 [GO] Microbiology Spectrum 2023―Mar―28 Genomic Characterization of Carbapenem-Resistant Acinetobacter baumannii (CRAB) in Mechanically Ventilated COVID-19 Patients and Impact of Infection Control Measures on Reducing CRAB Circulation during the Second Wave of the SARS-CoV-2 Pandemic in Milan, Italy Davide Mangioni, Valeria Fox, Liliane Chatenoud, Matteo Bolis, Nicola Bottino, Lisa Cariani, et al. (+13)
374 [GO] Antimicrobial Agents and Chemotherapy 2023―Mar―28 Inhibition of Human Coronaviruses by Combinations of Host-Targeted and Direct-Acting Antivirals Patricia de León, Rodrigo Cañas-Arranz, María José Bustos, Margarita Sáiz, Francisco Sobrino
375 [GO] Microbiology Spectrum 2023―Mar―28 Implementation and Evaluation of the Clear Dx Platform for Sequencing SARS-CoV-2 Genomes in a Public Health Laboratory Arunachalam Ramaiah, Manjeet Khubbar, Samantha Scott, Amy Bauer, Jennifer Lentz, Katherine Akinyemi, et al. (+5)
376 [GO] Microbiology Spectrum 2023―Mar―28 Building-Level Detection Threshold of SARS-CoV-2 in Wastewater Nicole C. Rondeau, Oliver J. Rose, Ellen R. Alt, Lina A. Ariyan, Annabelle B. Elikan, Jenna L. Everard, et al. (+9)
377 [GO] Applied and Environmental Microbiology 2023―Mar―28 Monitoring Enteroviruses and SARS-CoV-2 in Wastewater Using the Polio Environmental Surveillance System in Japan Kazuhiro Kitakawa, Kouichi Kitamura, Hiromu Yoshida, Nicole R. Buan
378 [GO] mBio 2023―Mar―28 BCG Vaccination of Health Care Workers Does Not Reduce SARS-CoV-2 Infections nor Infection Severity or Duration: a Randomized Placebo-Controlled Trial Juana Claus, Thijs ten Doesschate, Cheyenne Gumbs, Cornelis H. van Werkhoven, Thomas W. van der Vaart, Axel B. Janssen, et al. (+36)
379 [GO] Microbiology Spectrum 2023―Mar―28 Assessment of QuantuMDx Q-POC Assay for Rapid Detection of SARS-CoV-2 Using Middle Turbinate Swabs Mariana Fernandez-Pittol, Juan Carlos Hurtado, Maryam Ali, Álvar Simarro, Fadiana Proaño, Maria Sierra, et al. (+2)
380 [GO] Microbiology Spectrum 2023―Mar―23 The COVID-19 Pandemic Sparked Off a Large-Scale Outbreak of Carbapenem-Resistant Acinetobacter baumannii from the Endemic Strains at an Italian Hospital Greta Petazzoni, Greta Bellinzona, Cristina Merla, Marta Corbella, Vincenzina Monzillo, Ørjan Samuelsen, et al. (+5)
381 [GO] Microbiology Spectrum 2023―Mar―22 COVID-19-Associated Pulmonary Aspergillosis Isolates Are Genomically Diverse but Similar to Each Other in Their Responses to Infection-Relevant Stresses Matthew E. Mead, Patrícia Alves de Castro, Jacob L. Steenwyk, Jean-Pierre Gangneux, Martin Hoenigl, Juergen Prattes, et al. (+12)
382 [GO] Microbiology Spectrum 2023―Mar―22 Ancestral SARS-CoV-2-Driven Antibody Repertoire Diversity in an Unvaccinated Individual Correlates with Expanded Neutralization Breadth Suprit Deshpande, Mohammed Yousuf Ansari, Jyoti Sutar, Payel Das, Nitin Hingankar, Sohini Mukherjee, et al. (+24)
383 [GO] Microbiology Spectrum 2023―Mar―21 Comparison of Reverse Transcription (RT)-Quantitative PCR and RT-Droplet Digital PCR for Detection of Genomic and Subgenomic SARS-CoV-2 RNA Sara Morón-López, Eva Riveira-Muñoz, Victor Urrea, Lucia Gutiérrez-Chamorro, Carlos Ávila-Nieto, Marc Noguera-Julian, et al. (+7)
384 [GO] Microbiology Spectrum 2023―Mar―21 Discovery of Brassica Yellows Virus and Porcine Reproductive and Respiratory Syndrome Virus in Diaphorina citri and Changes in Virome Due to Infection with ‘ Ca . L. asiaticus’ Jinming Lu, Lixia Zeng, Paul Holford, George A. C. Beattie, Yanjing Wang, Daifeng Cheng
385 [GO] Journal of Virology 2023―Mar―21 PSMB4 Degrades the Porcine Reproductive and Respiratory Syndrome Virus Nsp1α Protein via the Autolysosome Pathway and Induces the Production of Type I Interferon Heyou Yi, Qiumei Wang, Lechen Lu, Ruirui Ye, Ermin Xie, Zhiqing Yu, et al. (+9)
386 [GO] Journal of Microbiology and Biology Education 2023―Mar―16 COVID-19 Scientific Literacy in Medical and Nursing Students Maria Cabreja-Castillo, Leislany Hernandez, Alicia Mustafa, Gregory Hungria, Maria T. Bertoli, Nicole C. Kelp
387 [GO] Microbiology Spectrum 2023―Mar―16 Development, Validation, and Utilization of a Luminex-Based SARS-CoV-2 Multiplex Serology Assay Daisy R. Roy, Troy J. Kemp, Katarzyna Haynesworth, Sarah A. Loftus, Ligia A. Pinto, Gemma Moncunill
388 [GO] Microbiology Spectrum 2023―Mar―14 Oral Administration of Universal Bacterium-Vectored Nucleocapsid-Expressing COVID-19 Vaccine is Efficacious in Hamsters Qingmei Jia, Helle Bielefeldt-Ohmann, Rachel M. Maison, Airn Hartwig, Saša Masleša-Galić, Richard A. Bowen, et al. (+2)
389 [GO] Microbiology Spectrum 2023―Mar―14 Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic Govind Prasad Sah, Grace Kovalick, Jessica Chopyk, Peiting Kuo, Lina Huang, Pooja Ghatbale, et al. (+6)
390 [GO] Microbiology Spectrum 2023―Mar―14 Transmission of SARS-CoV-2 Omicron Variant under a Dynamic Clearance Strategy in Shandong, China Yifei Xu, Ti Liu, Yan Li, Xuemin Wei, Zhaoguo Wang, Ming Fang, et al. (+15)
391 [GO] Microbiology Spectrum 2023―Mar―14 Impaired Humoral Immunity Identified in Inactivated SARS-CoV-2 Vaccine Recipients without Anti-Spike RBD Antibodies Ting Sun, Yuchen Wang, Xiaoyu Song, Ruili Li, Fanghua Mei, Mengliu Yang, et al. (+12)
392 [GO] Journal of Virology 2023―Mar―14 The Genetic Variation of Porcine Reproductive and Respiratory Syndrome Virus Replicase Protein nsp2 Modulates Viral Virulence and Persistence Can Kong, Dan Li, Yanxin Hu, Peng Gao, Yongning Zhang, Lei Zhou, et al. (+5)
393 [GO] Microbiology Spectrum 2023―Mar―13 A Synthetic SARS-CoV-2-Derived T-Cell and B-Cell Peptide Cocktail Elicits Full Protection against Lethal Omicron BA.1 Infection in H11-K18-hACE2 Mice Yang Song, Hongqiao Hu, Kang Xiao, Xinghu Huang, Hong Guo, Yuqing Shi, et al. (+10)
394 [GO] Journal of Virology 2023―Mar―10 A critical analysis of the evidence for the SARS-CoV-2 origin hypotheses James C. Alwine, Arturo Casadevall, Lynn W. Enquist, Felicia D. Goodrum, Michael J. Imperiale
395 [GO] mBio 2023―Mar―10 A critical analysis of the evidence for the SARS-CoV-2 origin hypotheses James C. Alwine, Arturo Casadevall, Lynn W. Enquist, Felicia D. Goodrum, Michael J. Imperiale
396 [GO] mSphere 2023―Mar―10 A critical analysis of the evidence for the SARS-CoV-2 origin hypotheses James C. Alwine, Arturo Casadevall, Lynn W. Enquist, Felicia D. Goodrum, Michael J. Imperiale
397 [GO] mBio 2023―Mar―09 SARS-CoV-2 Exposure in Norway Rats (Rattus norvegicus) from New York City Yang Wang, Julianna Lenoch, Dennis Kohler, Thomas J. DeLiberto, Cynthia Y. Tang, Tao Li, et al. (+7)
398 [GO] Journal of Virology 2023―Mar―06 Bat-Origin Swine Acute Diarrhea Syndrome Coronavirus Is Lethal to Neonatal Mice Yueyue Duan, Cong Yuan, Xuepeng Suo, Yanhua Li, Lei Shi, Liyan Cao, et al. (+5)
399 [GO] Microbiology Spectrum 2023―Mar―06 Short-Lived Antibody-Mediated Saliva Immunity against SARS-CoV-2 after Vaccination Johannes Roth Madsen, Bettina Eide Holm, Laura Pérez-Alós, Rafael Bayarri-Olmos, Anne Rosbjerg, Kamille Fogh, et al. (+13)
400 [GO] Microbiology Spectrum 2023―Mar―06 A Rapid Method for Generating Infectious SARS-CoV-2 and Variants Using Mutagenesis and Circular Polymerase Extension Cloning Beom Kyu Kim, Won-Suk Choi, Ju Hwan Jeong, Sol Oh, Ji-Hyun Park, Yu Soo Yun, et al. (+9)
401 [GO] Microbiology Spectrum 2023―Mar―06 Molecular Characterization of AZD7442 (Tixagevimab-Cilgavimab) Neutralization of SARS-CoV-2 Omicron Subvariants Tiffany L. Roe, Tyler Brady, Nicolette Schuko, Amy Nguyen, Jagadish Beloor, Johnathan D. Guest, et al. (+7)
402 [GO] Journal of Virology 2023―Mar―06 SARS-CoV-2 ORF8 Protein Induces Endoplasmic Reticulum Stress-like Responses and Facilitates Virus Replication by Triggering Calnexin: an Unbiased Study Xuefeng Wang, Wenqi Wang, Tiecheng Wang, Jianzhong Wang, Yuhang Jiang, Xue Wang, et al. (+9)
403 [GO] mSystems 2023―Mar―02 The Coming of Age of Nucleic Acid Vaccines during COVID-19 Halie M. Rando, Ronan Lordan, Likhitha Kolla, Elizabeth Sell, Alexandra J. Lee, Nils Wellhausen, et al. (+56)
404 [GO] Microbiology Spectrum 2023―Mar―02 A Randomized Clinical Trial Testing Hydroxychloroquine for Reduction of SARS-CoV-2 Viral Shedding and Hospitalization in Early Outpatient COVID-19 Infection Adam M. Spivak, Bradley J. Barney, Tom Greene, Richard Holubkov, Cody S. Olsen, Jordan Bridges, et al. (+8)
405 [GO] mSystems 2023―Mar―02 Application of Traditional Vaccine Development Strategies to SARS-CoV-2 Halie M. Rando, Ronan Lordan, Alexandra J. Lee, Amruta Naik, Nils Wellhausen, Elizabeth Sell, et al. (+56)
406 [GO] Applied and Environmental Microbiology 2023―Mar―01 Laboratory Evaluation of a Quaternary Ammonium Compound-Based Antimicrobial Coating Used in Public Transport during the COVID-19 Pandemic Paz Aranega-Bou, Natalie Brown, Abigail Stigling, Wilhemina D’Costa, Neville Q. Verlander, Thomas Pottage, et al. (+3)
407 [GO] Microbiology Spectrum 2023―Feb―28 Integrated Metabolic and Inflammatory Signatures Associated with Severity of, Fatality of, and Recovery from COVID-19 Luiz Gustavo Gardinassi, Carolina do Prado Servian, Gesiane da Silva Lima, Déborah Carolina Carvalho dos Anjos, Antonio Roberto Gomes Junior, Adriana Oliveira Guilarde, et al. (+21)
408 [GO] mSphere 2023―Feb―28 Unique Genomic Epidemiology of COVID-19 in the White Mountain Apache Tribe, April to August 2020, Arizona Jolene R. Bowers, Hayley D. Yaglom, Crystal M. Hepp, Ashlyn Pfeiffer, Daniel Jasso-Selles, Nicole Bratsch, et al. (+12)
409 [GO] Microbiology Spectrum 2023―Feb―28 Performance Evaluation of Four Qualitative RT-PCR Assays for the Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Riffat Munir, Lesley Erica Scott, Lara Dominique Noble, Kim Steegen, Lucia Hans, Wendy Susan Stevens, Clinton J. Jones
410 [GO] mBio 2023―Feb―28 SARS-CoV-2 SUD2 and Nsp5 Conspire to Boost Apoptosis of Respiratory Epithelial Cells via an Augmented Interaction with the G-Quadruplex of BclII Ying Li, Quanwei Yu, Ridong Huang, Hai Chen, Hequan Ren, Lingling Ma, et al. (+3)
411 [GO] Journal of Virology 2023―Feb―27 All Domains of SARS-CoV-2 nsp1 Determine Translational Shutoff and Cytotoxicity of the Protein Ilya Frolov, Tatiana Agback, Oksana Palchevska, Francisco Dominguez, Alexander Lomzov, Peter Agback, et al. (+2)
412 [GO] Microbiology Spectrum 2023―Feb―27 A Beta Strain-Based Spike Glycoprotein Vaccine Candidate Induces Broad Neutralization and Protection against SARS-CoV-2 Variants of Concern Lei Cao, Jinyuan Guo, Hai Li, Hu Ren, Kang Xiao, Yan Zhang, et al. (+16)
413 [GO] mBio 2023―Feb―23 Reduced Mortality among COVID-19 ICU Patients after Treatment with HemoClear Convalescent Plasma in Suriname R. Bihariesingh-Sanchit, R. Bansie, N. Ramdhani, R. Mangroo, D. Bustamente, E. Diaz, et al. (+8)
414 [GO] Applied and Environmental Microbiology 2023―Feb―23 Bioaccumulation Pattern of the SARS-CoV-2 Spike Proteins in Pacific Oyster Tissues Chenang Lyu, Ran An, Chu Liu, Zhentao Shi, Yanfei Wang, Guangda Luo, et al. (+3)
415 [GO] Microbiology Spectrum 2023―Feb―23 Porcine Reproductive and Respiratory Syndrome Virus nsp5 Induces Incomplete Autophagy by Impairing the Interaction of STX17 and SNAP29 Yanrong Zhou, Yang Li, Ran Tao, Jia Li, Liurong Fang, Shaobo Xiao, Biao He
416 [GO] Microbiology Spectrum 2023―Feb―22 Evaluation of Environmental Stability and Disinfectant Effectiveness for Human Coronavirus OC43 on Human Skin Surface Naoto Watanabe, Ryohei Hirose, Katsuma Yamauchi, Hajime Miyazaki, Risa Bandou, Takuma Yoshida, et al. (+12)
417 [GO] Journal of Clinical Microbiology 2023―Feb―21 Metagenomic Next-Generation Sequencing of Plasma for Diagnosis of COVID-19-Associated Pulmonary Aspergillosis Martin Hoenigl, Matthias Egger, Jessica Price, Robert Krause, Juergen Prattes, P. Lewis White, Kimberly E. Hanson
418 [GO] Microbiology Spectrum 2023―Feb―21 Trajectory of Humoral Responses to Two Doses of ChAdOx1 nCoV-19 Vaccination in Patients Receiving Maintenance Hemodialysis Tsai-Chieh Ling, Po-Lin Chen, Nan-Yao Li, Wen-Chien Ko, Chien-Yao Sun, Jo-Yen Chao, et al. (+8)
419 [GO] Microbiology Spectrum 2023―Feb―21 Antibodies to Nucleocapsid Are Not Diagnostic for Long COVID C. T. Brandt, L. Wiese, K. M. Christiansen, J. Agergaard, Holly Ramage
420 [GO] Journal of Virology 2023―Feb―15 Cytoplasmic Tail Truncation Stabilizes S1-S2 Association and Enhances S Protein Incorporation into SARS-CoV-2 Pseudovirions Lizhou Zhang, Nancy Hom, Amrita Ojha, Klaus N. Lovendahl, Huihui Mou, Kelly K. Lee, et al. (+2)
421 [GO] mBio 2023―Feb―14 Strategy To Assess Zoonotic Potential Reveals Low Risk Posed by SARS-Related Coronaviruses from Bat and Pangolin Yong Yang, Xu-Rui Shen, Yu-Lan Zhang, Ren-di Jiang, Xi Wang, Zhen-Qiong Guan, et al. (+12)
422 [GO] mBio 2023―Feb―14 High-Throughput Neutralization and Serology Assays Reveal Correlated but Highly Variable Humoral Immune Responses in a Large Population of Individuals Infected with SARS-CoV-2 in the US between March and August 2020 Shuting Zhang, Peijun Ma, Marek Orzechowski, Allison Lemmer, Kara Rzasa, Josephine Bagnall, et al. (+25)
423 [GO] mBio 2023―Feb―14 Intra-Host Evolution Provides for the Continuous Emergence of SARS-CoV-2 Variants Justin T. Landis, Razia Moorad, Linda J. Pluta, Carolina Caro-Vegas, Ryan P. McNamara, Anthony B. Eason, et al. (+9)
424 [GO] Microbiology Spectrum 2023―Feb―14 Emergence of Pandemic Clonal Lineage Sequence Types 131 and 69 of Extraintestinal Escherichia coli as a Cause of Meningitis: Is It Time To Revise Molecular Assays? Maria Antonia De Francesco, Anna Bertelli, Silvia Corbellini, Erika Scaltriti, Francesco Risso, Roberto Allegri, et al. (+4)
425 [GO] Microbiology Spectrum 2023―Feb―14 Reply to Brandt et al., “Antibodies to Nucleocapsid Are Not Diagnostic for Long COVID Kamille Fogh, Peter Garred, Cecilie B. Hansen, Kasper K. Iversen, Holly Ramage
426 [GO] Journal of Virology 2023―Feb―13 Immunity to Seasonal Coronavirus Spike Proteins Does Not Protect from SARS-CoV-2 Challenge in a Mouse Model but Has No Detrimental Effect on Protection Mediated by COVID-19 mRNA Vaccination Fatima Amanat, Jordan Clark, Juan Manuel Carreño, Shirin Strohmeier, Temima Yellin, Philip S. Meade, et al. (+7)
427 [GO] Microbiology Spectrum 2023―Feb―13 Differences in Immune Responses in Individuals of Indian and European Origin: Relevance for the COVID-19 Pandemic Büsra Geckin, Martijn Zoodsma, Gizem Kilic, Priya A. Debisarun, Srabanti Rakshit, Vasista Adiga, et al. (+11)
428 [GO] Journal of Virology 2023―Feb―13 Deletion of the s2m RNA Structure in the Avian Coronavirus Infectious Bronchitis Virus and Human Astrovirus Results in Sequence Insertions Sarah Keep, Giulia Dowgier, Valeria Lulla, Paul Britton, Michael Oade, Graham Freimanis, et al. (+5)
429 [GO] Microbiology Resource Announcements 2023―Feb―13 Severe Acute Respiratory Syndrome Coronavirus-2 Lambda Variant Collected from a Child from Arkansas and Sequenced Lori Wong, Christopher Randolph, Emily Kanwischer, Ashton Ingold, Bobby L. Boyanton, Jay Taylor, et al. (+12)
430 [GO] Journal of Virology 2023―Feb―13 Transferrin Receptor Protein 1 Cooperates with mGluR2 To Mediate the Internalization of Rabies Virus and SARS-CoV-2 Xinxin Wang, Zhiyuan Wen, Huizhen Cao, Jie Luo, Lei Shuai, Chong Wang, et al. (+5)
431 [GO] Microbiology Spectrum 2023―Feb―13 Performance of the GeneSoC Rapid PCR System in Detection of SARS-CoV-2 from Saliva Specimens Kenji Ota, Ryo Kurahara, Chie Tsukamoto, Yasuhide Kawamoto, Norihiko Akamatsu, Daisuke Sasaki, et al. (+9)
432 [GO] Microbiology Resource Announcements 2023―Feb―13 Coding-Complete Genome Sequences of 40 SARS-CoV-2 Omicron XBB, XBB.1, and XBB.2 Sublineage Strains in Bangladesh Mohammad Tanbir Habib, Mokibul Hassan Afrad, Saikt Rahman, Manjur Hossain Khan, Mohammad Moajjam Hossain, Farhana Khanam, et al. (+4)
433 [GO] Microbiology Spectrum 2023―Feb―08 Assessment of Level of Depression and Associated Factors among COVID-19-Recovered Patients: a Cross-Sectional Study Khadeza Khatun, Nasreen Farhana, Clinton J. Jones
434 [GO] Journal of Virology 2023―Feb―07 Erratum for Lin et al., “Longitudinal Assessment of SARS-CoV-2-Specific T Cell Cytokine-Producing Responses for 1 Year Reveals Persistence of Multicytokine Proliferative Responses, with Greater Immunity Associated with Disease Severity” Jonah Lin, Ryan Law, Chapin S. Korosec, Christine Zhou, Wan Hon Koh, Mohammad Sajjad Ghaemi, et al. (+16)
435 [GO] mBio 2023―Feb―06 Guild-Level Microbiome Signature Associated with COVID-19 Severity and Prognosis Mingquan Guo, Guojun Wu, Yun Tan, Yan Li, Xin Jin, Weiqiang Qi, et al. (+5)
436 [GO] Microbiology Spectrum 2023―Feb―06 Single Amino Acid Substitution in the Receptor Binding Domain of Spike Protein Is Sufficient To Convert the Neutralization Profile between Ethiopian and Middle Eastern Isolates of Middle East Respiratory Coronavirus Satoko Sugimoto, Masatoshi Kakizaki, Miyuki Kawase, Kengo Kawachi, Makoto Ujike, Wataru Kamitani, et al. (+3)
437 [GO] mBio 2023―Feb―02 Siglec-9 Restrains Antibody-Dependent Natural Killer Cell Cytotoxicity against SARS-CoV-2 Pratima Saini, Opeyemi S. Adeniji, Devivasha Bordoloi, Jennifer Kinslow, Jeff Martinson, Danielle M. Parent, et al. (+14)
438 [GO] mSphere 2023―Feb―02 Mouse-Adapted SARS-CoV-2 MA10 Strain Displays Differential Pulmonary Tropism and Accelerated Viral Replication, Neurodissemination, and Pulmonary Host Responses in K18-hACE2 Mice Côme J. Thieulent, Wellesley Dittmar, Udeni B. R. Balasuriya, Nicholas A. Crossland, Xue Wen, Juergen A. Richt, et al. (+2)
439 [GO] Microbiology Spectrum 2023―Feb―01 Respiratory Virus Infections during the COVID-19 Pandemic Revealed by Multiplex PCR Testing in Japan Sho Yamashita, Satoshi Ikegame, Keita Nakatomi, Yuko Sakurai, Hiroe Shuto, Noriko Sato, et al. (+6)
440 [GO] Microbiology Spectrum 2023―Feb―01 Beyond Costs: Pragmatic Considerations for Pooling of SARS-CoV-2 Test Samples for Nursing Home Surveillance Gabrielle M. Gussin, Raveena D. Singh, Delia F. Tifrea, Thomas Tjoa, Cassiana E. Bittencourt, Robert A. Edwards, et al. (+3)
441 [GO] Journal of Virology 2023―Feb―01 SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3 Craig Schindewolf, Kumari Lokugamage, Michelle N. Vu, Bryan A. Johnson, Dionna Scharton, Jessica A. Plante, et al. (+13)
442 [GO] Journal of Virology 2023―Jan―31 Trimeric, APC-Targeted Subunit Vaccines Protect Mice against Seasonal and Pandemic Influenza Elias Tjärnhage, Diamond Brown, Bjarne Bogen, Tor Kristian Andersen, Gunnveig Grødeland, Kanta Subbarao
443 [GO] Microbiology Spectrum 2023―Jan―25 mRNA Vaccine Mitigates SARS-CoV-2 Infections and COVID-19 Christina M. Kackos, Sherri L. Surman, Bart G. Jones, Robert E. Sealy, Trushar Jeevan, Christopher J. H. Davitt, et al. (+7)
444 [GO] mSphere 2023―Jan―25 Low Viral Diversity Limits the Effectiveness of Sequence-Based Transmission Inference for SARS-CoV-2 Mireille Farjo, Christopher B. Brooke
445 [GO] Microbiology Spectrum 2023―Jan―25 N-Acetyltransferase 9 Inhibits Porcine Reproductive and Respiratory Syndrome Virus Proliferation by N-Terminal Acetylation of the Structural Protein GP5 Xiaoyang Li, Ruiqi Sun, Yanyu Guo, Huixia Zhang, Ruyu Xie, Xubin Fu, et al. (+5)
446 [GO] Microbiology Spectrum 2023―Jan―23 Impact of COVID-19 on the Epidemiological Features of Mycoplasma pneumoniae Infection in Children with Community-Acquired Pneumonia in Henan, China Lifeng Li, Pengbo Guo, Jiayue Ma, Huiqing Sun, Shiyue Mei, Tulip A. Jhaveri
447 [GO] Microbiology Spectrum 2023―Jan―23 Quantification of Severe Acute Respiratory Syndrome Coronavirus 2 Binding Antibody Levels To Assess Infection and Vaccine-Induced Immunity Using WHO Standards Olivier Pernet, Steven Balog, Eric S. Kawaguchi, Chun Nok Lam, Patricia Anthony, Paul Simon, et al. (+5)
448 [GO] mSphere 2023―Jan―23 Dynamics of Different Classes and Subclasses of Antibody Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Variants after Coronavirus Disease 2019 and CoronaVac Vaccination in Thailand Prapassorn Poolchanuan, Wasin Matsee, Sineenart Sengyee, Tanaya Siripoon, Adul Dulsuk, Rungnapa Phunpang, et al. (+5)
449 [GO] Microbiology Spectrum 2023―Jan―23 Ancestral Lineage of SARS-CoV-2 Is More Stable in Human Biological Fluids than Alpha, Beta, and Omicron Variants of Concern Taeyong Kwon, Natasha N. Gaudreault, David A. Meekins, Chester D. McDowell, Konner Cool, Juergen A. Richt, Daniel R. Perez
450 [GO] Journal of Virology 2023―Jan―23 A SARS-CoV-2-Related Virus from Malayan Pangolin Causes Lung Infection without Severe Disease in Human ACE2-Transgenic Mice Mei-Qin Liu, Hao-Feng Lin, Jing Li, Ying Chen, Yun Luo, Wei Zhang, et al. (+13)
451 [GO] Microbiology Spectrum 2023―Jan―19 Stability of the COVID-19 At-Home Test after Exposure to Extreme Temperatures Erin Gick, Stephen McCune, Jamie P. Deeter, Heba H. Mostafa
452 [GO] Microbiology Spectrum 2023―Jan―19 Evaluation of the Rapid Antigen Detection Test for Diagnosing SARS-CoV-2 during the COVID-19 Pandemic: Experience from a Centralized Isolation Site in Shanghai, China Xu Zhong, Li Zhang, Di Ma, Yingying Shi, Jiayin Wu, Xiaosheng Xu, et al. (+9)
453 [GO] mSphere 2023―Jan―19 SARS-CoV-2 Antibody Prevalence among Industrial Livestock Operation Workers and Nearby Community Residents, North Carolina, 2021 to 2022 Carolyn Gigot, Nora Pisanic, Kate Kruczynski, Magdielis Gregory Rivera, Kristoffer Spicer, Kathleen M. Kurowski, et al. (+8)
454 [GO] Journal of Virology 2023―Jan―19 Mucosal Gene Expression in Response to SARS-CoV-2 Is Associated with Viral Load Seesandra V. Rajagopala, Britton A. Strickland, Suman B. Pakala, Kyle S. Kimura, Meghan H. Shilts, Christian Rosas-Salazar, et al. (+9)
455 [GO] Microbiology Spectrum 2023―Jan―18 Standardization of SARS-CoV-2 Cycle Threshold Values: Multisite Investigation Evaluating Viral Quantitation across Multiple Commercial COVID-19 Detection Platforms Kenneth Gavina, Lauren C. Franco, Christopher M. Robinson, Weston Hymas, Guang-Sheng Lei, Will Sinclair, et al. (+9)
456 [GO] Microbiology Spectrum 2023―Jan―18 Aptamer-Assisted Proximity Ligation Assay for Sensitive Detection of Infectious Bronchitis Coronavirus Issam Hmila, Boutheina Marnissi, Masood Kamali-Moghaddam, Abdeljelil Ghram, Daniel R. Perez
457 [GO] Journal of Virology 2023―Jan―18 A Heterologous Challenge Rescues the Attenuated Immunogenicity of SARS-CoV-2 Omicron BA.1 Variant in Syrian Hamster Model Jian Ma, Xuan Liu, Ming Zhou, Peiwen Chen, Rirong Chen, Jia Wang, et al. (+11)
458 [GO] mBio 2023―Jan―18 Do SARS-CoV-2 Variants Differ in Their Neuropathogenicity? Lisa Bauer, Debby van Riel
459 [GO] Microbiology Spectrum 2023―Jan―16 Impact of COVID-19 Nonpharmaceutical Interventions on Pneumococcal Carriage Prevalence and Density in Vietnam Monica Larissa Nation, Sam Manna, Hau Phuc Tran, Cattram Duong Nguyen, Le Thi Tuong Vy, Doan Y. Uyen, et al. (+13)
460 [GO] Microbiology Spectrum 2023―Jan―16 Trends in the Rates of Extended-Spectrum-β-Lactamase-Producing Enterobacterales Isolated from Urine Cultures during the COVID-19 Pandemic in Ontario, Canada Mohammad R. Hasan, Yasmeen M. Vincent, Daniela Leto, Huda Almohri, Sandeep Tamber
461 [GO] Journal of Virology 2023―Jan―12 Impact of Reinfection with SARS-CoV-2 Omicron Variants in Previously Infected Hamsters Nozomi Shiwa-Sudo, Yusuke Sakai, Naoko Iwata-Yoshikawa, Shinji Watanabe, Souichi Yamada, Yudai Kuroda, et al. (+12)
462 [GO] Microbiology Spectrum 2023―Jan―11 Rapid Assessment of SARS-CoV-2 Variant-Associated Mutations in Wastewater Using Real-Time RT-PCR Kata Farkas, Cameron Pellett, Rachel Williams, Natasha Alex-Sanders, Irene Bassano, Mathew R. Brown, et al. (+10)
463 [GO] mBio 2023―Jan―10 Endemic Human Coronavirus Antibody Levels Are Unchanged after Convalescent or Control Plasma Transfusion for Early Outpatient COVID-19 Treatment Andrew H. Karaba, Trevor S. Johnston, Evan Beck, Oliver Laeyendecker, Andrea L. Cox, Sabra L. Klein, et al. (+61)
464 [GO] mBio 2023―Jan―10 The Substitutions L50F, E166A, and L167F in SARS-CoV-2 3CLpro Are Selected by a Protease Inhibitor In Vitro and Confer Resistance To Nirmatrelvir Dirk Jochmans, Cheng Liu, Kim Donckers, Antitsa Stoycheva, Sandro Boland, Sarah K. Stevens, et al. (+20)
465 [GO] Microbiology Spectrum 2023―Jan―10 Rapid and Flexible RT-qPCR Surveillance Platforms To Detect SARS-CoV-2 Mutations Katja Spiess, Vithiagaran Gunalan, Ellinor Marving, Sofie Holdflod Nielsen, Michelle G. P. Jørgensen, Anna S. Fomsgaard, et al. (+13)
466 [GO] Microbiology Spectrum 2023―Jan―10 Cross-Canada Variability in Blood Donor SARS-CoV-2 Seroprevalence by Social Determinants of Health Sheila F. O’Brien, Niamh Caffrey, Qi-Long Yi, Shelly Bolotin, Naveed Z. Janjua, Mawuena Binka, et al. (+8)
467 [GO] mSphere 2023―Jan―10 SARS-CoV-2 Transmission from Virus-Infected Dead Hamsters Kiyoko Iwatsuki-Horimoto, Hiroshi Ueki, Mutsumi Ito, Sayaka Nagasawa, Yuichiro Hirata, Kenichiro Hashizume, et al. (+9)
468 [GO] Microbiology Spectrum 2023―Jan―10 Epitranscriptomic N 6 -Methyladenosine Profile of SARS-CoV-2-Infected Human Lung Epithelial Cells Stacia Phillips, Tarun Mishra, Shaubhagya Khadka, Dana Bohan, Constanza E. Espada, Wendy Maury, et al. (+2)
469 [GO] mBio 2023―Jan―10 SARS-CoV-2-Mediated Lung Edema and Replication Are Diminished by Cystic Fibrosis Transmembrane Conductance Regulator Modulators Jose M. Honrubia, Javier Gutierrez-Álvarez, Alejandro Sanz-Bravo, Ezequiel González-Miranda, Diego Muñoz-Santos, Carlos Castaño-Rodriguez, et al. (+12)
470 [GO] Microbiology Spectrum 2023―Jan―09 Use of Self-Collected Dried Blood Spots and a Multiplex Microsphere Immunoassay to Measure IgG Antibody Response to COVID-19 Vaccines Katherine L. Nemeth, Erica Yauney, Jean M. Rock, Rachel Bievenue, Monica M. Parker, Linda M. Styer, Tulip A. Jhaveri
471 [GO] Microbiology Spectrum 2023―Jan―09 SARS-CoV-2 Harnesses Host Translational Shutoff and Autophagy To Optimize Virus Yields: the Role of the Envelope (E) Protein Hope Waisner, Brandon Grieshaber, Rabina Saud, Wyatt Henke, Edward B. Stephens, Maria Kalamvoki, Saumitra Das
472 [GO] mBio 2023―Jan―09 Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA Matthew F. Smith, Steven C. Holland, Mihyun B. Lee, James C. Hu, Nghia C. Pham, Regan A. Sullins, et al. (+15)
473 [GO] Microbiology Spectrum 2023―Jan―09 Rapid and Visual Detection of SARS-CoV-2 RNA Based on Reverse Transcription-Recombinase Polymerase Amplification with Closed Vertical Flow Visualization Strip Assay Yumeng Song, Pei Huang, Mengtao Yu, Yuanguo Li, Hongli Jin, Jiazhang Qiu, et al. (+5)
474 [GO] Microbiology Spectrum 2023―Jan―09 Genomic Analysis of the Suspicious SARS-CoV-2 Sequences in the Public Sequencing Database Xiao Sun, Chuanwen Kan, Wentai Ma, Zhenglin Du, Mingkun Li, Feng Gao
475 [GO] Microbiology Spectrum 2023―Jan―09 Comprehensive Comparison of Seven SARS-CoV-2-Specific Surrogate Virus Neutralization and Anti-Spike IgG Antibody Assays Using a Live-Virus Neutralization Assay as a Reference Marianne Graninger, Claudia Maria Jani, Elisabeth Reuberger, Katja Prüger, Philipp Gaspar, David Niklas Springer, et al. (+10)
476 [GO] Microbiology Spectrum 2023―Jan―05 Human Endogenous Retrovirus (HERV) Transcriptome Is Dynamically Modulated during SARS-CoV-2 Infection and Allows Discrimination of COVID-19 Clinical Stages Nicole Grandi, Maria Chiara Erbì, Sante Scognamiglio, Enzo Tramontano, Takamasa Ueno
477 [GO] Microbiology Spectrum 2023―Jan―05 Longevity and Neutralizing Capacity of IgG Antibodies against SARS-CoV-2 Generated by the Application of BNT162b2, AZD1222, Convidecia, Sputnik V, and CoronaVac Vaccines: a Cohort Study in the Mexican Population Larissa Fernandes-Matano, Angel Gustavo Salas-Lais, Concepción Grajales-Muñiz, Mauricio Hernández-Ávila, Yonathan Omar Garfias-Becerra, Mario César Rodríguez-Sepúlveda, et al. (+10)
478 [GO] Microbiology Spectrum 2023―Jan―05 Validation and Establishment of the SARS-CoV-2 Lentivirus Surrogate Neutralization Assay as a Prescreening Tool for the Plaque Reduction Neutralization Test John Merluza, Johnny Ung, Kai Makowski, Alyssia Robinson, Kathy Manguiat, Nicole Mueller, et al. (+6)
479 [GO] Antimicrobial Agents and Chemotherapy 2023―Jan―05 Atypical Mutational Spectrum of SARS-CoV-2 Replicating in the Presence of Ribavirin Pilar Somovilla, Carlos García-Crespo, Brenda Martínez-González, María Eugenia Soria, Ana Isabel de Ávila, Isabel Gallego, et al. (+15)
480 [GO] Journal of Virology 2023―Jan―05 PSMB1 Inhibits the Replication of Porcine Reproductive and Respiratory Syndrome Virus by Recruiting NBR1 To Degrade Nonstructural Protein 12 by Autophagy Liwei Li, Yuanzhe Bai, Yanjun Zhou, Yifeng Jiang, Wu Tong, Guoxin Li, et al. (+4)
481 [GO] mSphere 2023―Jan―04 Experimental Infection of Mexican Free-Tailed Bats ( Tadarida brasiliensis ) with SARS-CoV-2 J. S. Hall, E. Hofmeister, H. S. Ip, S. W. Nashold, A. E. Leon, C. M. Malavé, et al. (+6)
482 [GO] Microbiology Spectrum 2022―Dec―22 A Cross-Sectional Study of SARS-CoV-2 Antibodies and Risk Factors for Seropositivity in Staff in Day Care Facilities and Preschools in Denmark Kamille Fogh, Alexandra R. R. Eriksen, Tine Graakjær Larsen, Rasmus B. Hasselbalch, Henning Bundgaard, Bibi F. S. S. Scharff, et al. (+31)
483 [GO] Antimicrobial Agents and Chemotherapy 2022―Dec―15 Prophylactic Administration of the Monoclonal Antibody Adintrevimab Protects against SARS-CoV-2 in Hamster and Non-Human Primate Models of COVID-19 Elizabeth E. Zumbrun, Chengzi I. Kaku, Lukas Dillinger, Samantha E. Zak, Ana I. Kuehne, Russel R. Bakken, et al. (+11)
484 [GO] Microbiology Spectrum 2022―Dec―15 Performance Evaluation of Five Rapid At-Home COVID-19 Antigen Tests against the Omicron Variant Victor A. Sugiharto, Stephanie K. Gatrell, Hua-Wei Chen, Gabrielle R. Blazek, Amanda M. Cherry, Megan Schilling, Tulip A. Jhaveri
485 [GO] Antimicrobial Agents and Chemotherapy 2022―Dec―14 A Double-Blind, Randomized, Placebo-Controlled, Phase II Clinical Study To Evaluate the Efficacy and Safety of Camostat Mesylate (DWJ1248) in Adult Patients with Mild to Moderate COVID-19 Yeon-Sook Kim, Seng-Ho Jeon, Junghee Kim, Jong Hoon Koh, Seung Won Ra, Ji Won Kim, et al. (+28)
486 [GO] Microbiology Spectrum 2022―Dec―14 Influx of Backyard Farming with Limited Biosecurity Due to the COVID-19 Pandemic Carries an Increased Risk of Zoonotic Spillover in Cambodia Sudipta Hyder, Benjamin L. Sievers, Claude Flamand, Damian TagoPacheco, Malen Chan, Filip Claes, et al. (+2)
487 [GO] Microbiology Spectrum 2022―Dec―13 Three Amino Acid Substitutions in the Spike Protein Enable the Coronavirus Porcine Epidemic Diarrhea Virus To Infect Vero Cells Bingqing Chen, Shijuan Dong, Li Yu, Fusheng Si, Chunhua Li, Chunfang Xie, et al. (+3)
488 [GO] Applied and Environmental Microbiology 2022―Dec―13 Virucidal Activities of Acidic Electrolyzed Water Solutions with Different pH Values against Multiple Strains of SARS-CoV-2 Yohei Takeda, Masaru Nikaido, Dulamjav Jamsransuren, Sachiko Matsuda, Haruko Ogawa, Nicole R. Buan
489 [GO] Microbiology Spectrum 2022―Dec―13 Novel Affibody Molecules Specifically Bind to SARS-CoV-2 Spike Protein and Efficiently Neutralize Delta and Omicron Variants Wangqi Du, Peipei Jiang, Qingfeng Li, He Wen, Maolin Zheng, Jing Zhang, et al. (+11)
490 [GO] mSystems 2022―Dec―12 A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants Jack Albright, Eran Mick, Estella Sanchez-Guerrero, Jack Kamm, Anthea Mitchell, Angela M. Detweiler, et al. (+10)
491 [GO] Microbiology Resource Announcements 2022―Dec―12 Genome Sequences of SARS-CoV-2 Strains from the Republic of Moldova Mariana Ulinici, Martín Soñora, Emanuele Orsini, Danilo Licastro, Simeone Dal Monego, Mihail Todiras, et al. (+4)
492 [GO] Microbiology Spectrum 2022―Dec―08 Sotrovimab in Hospitalized Patients with SARS-CoV-2 Omicron Variant Infection: a Propensity Score-Matched Retrospective Cohort Study Marcel S. Woo, Thomas Theo Brehm, Marlene Fischer, Andreas Heyer, Dominic Wichmann, Sabine Jordan, et al. (+8)
493 [GO] Microbiology Resource Announcements 2022―Dec―06 Genome Sequences of 23 SARS-CoV-2 Omicron-Lineage Strains from Bangladesh Mohabbat Hossain, Omar Hamza Bin Manjur, Lincon Hasda, Mohammad Tanbir Habib, Mokibul Hassan Afrad, Manjur Hossain Khan, et al. (+12)
494 [GO] mBio 2022―Dec―05 Correction for Zhou et al., “Neutralization Titers in Vaccinated Patients with SARS-CoV-2 Delta Breakthrough Infections” Jing Zou, Xuping Xie, Mingru Liu, Pei-Yong Shi, Ping Ren
495 [GO] Journal of Virology 2022―Dec―05 Sertraline Is an Effective SARS-CoV-2 Entry Inhibitor Targeting the Spike Protein Yuliu Chen, Yan Wu, Shaoying Chen, Qingping Zhan, Dingzhou Wu, Chan Yang, et al. (+17)
496 [GO] Microbiology Spectrum 2022―Dec―01 Direct Nasal Swab for Rapid Test and Saliva as an Alternative Biological Sample for RT-PCR in COVID-19 Diagnosis Saiful Arefeen Sazed, Mohammad Golam Kibria, Md Fahad Zamil, Mohammad Sharif Hossain, Jeba Zaman Khan, Rifat Tasnim Juthi, et al. (+6)
497 [GO] Microbiology Spectrum 2022―Dec―01 Clinical SARS-CoV-2 Kinetic Profiles Are Dependent on the Viral Strain and Host Vaccination Status Manjula Gunawardana, John M. Cortez, Jessica Breslin, Simon Webster, Nash D. Rochman, Peter A. Anton, et al. (+2)
498 [GO] Microbiology Spectrum 2022―Nov―30 Multicenter Diagnostic Evaluation of a Novel Coronavirus Antigen Lateral Flow Test among Symptomatic Individuals in Brazil and the United Kingdom Debora S. Faffe, Rachel L. Byrne, Richard Body, Terezinha Marta P. Castiñeiras, Anna P. Castiñeiras, Lorna S. Finch, et al. (+48)
499 [GO] Journal of Virology 2022―Nov―30 Different Mechanisms Are Utilized by Coronavirus Transmissible Gastroenteritis Virus To Regulate Interferon Lambda 1 and Interferon Lambda 3 Production Mei Xue, Wenzhe Wang, Haojie He, Liang Li, Xin Zhang, Hongyan Shi, et al. (+3)
500 [GO] Microbiology Resource Announcements 2022―Nov―30 Genome Sequence of a Recombinant SARS-CoV-2 Lineage XAM (BA.1.1/BA.2.9) Strain from a Clinical Sample in Santo Domingo, Dominican Republic Robert Paulino-Ramírez, Kien Pham, Mallery I. Breban, Armando Peguero, Maridania Jabier, Nelissa Sánchez, et al. (+5)
501 [GO] mSphere 2022―Nov―30 Epidemiological and Genomic Analysis of a Large SARS-CoV-2 Outbreak in a Long-Term Care Facility in Catalonia, Spain Antoni E. Bordoy, Xavier Vallès, Anna Not, Álvaro Chiner-Oms, Verónica Saludes, Judit Torres Cervós, et al. (+16)
502 [GO] Journal of Virology 2022―Nov―30 Neuromasts and Olfactory Organs of Zebrafish Larvae Represent Possible Sites of SARS-CoV-2 Pseudovirus Host Cell Entry Sheyne S. A. Choi, Ho Hin Chan, Ching Man Chan, Xiaoyang Wang, Sarah E. Webb, Ka Wing Leung, et al. (+3)
503 [GO] Journal of Virology 2022―Nov―30 Detection of Airborne Influenza A and SARS-CoV-2 Virus Shedding following Ocular Inoculation of Ferrets Jessica A. Belser, Xiangjie Sun, Troy J. Kieran, Nicole Brock, Joanna A. Pulit-Penaloza, Claudia Pappas, et al. (+7)
504 [GO] Microbiology Spectrum 2022―Nov―29 Development and Validation of a Novel COVID-19 nsp8 One-Tube RT-LAMP-CRISPR Assay for SARS-CoV-2 Diagnosis Cyril Chik-Yan Yip, Siddharth Sridhar, Wan-Mui Chan, Jonathan Daniel Ip, Allen Wing-Ho Chu, Kit-Hang Leung, et al. (+4)
505 [GO] Microbiology Spectrum 2022―Nov―29 Outbreak of Klebsiella pneumoniae ST11 Resistant To Ceftazidime-Avibactam Producing KPC-31 and the Novel Variant KPC-115 during COVID-19 Pandemic in Argentina Federico Nicola, Daniela Cejas, Francisco González-Espinosa, Silvia Relloso, Fabián Herrera, Pablo Bonvehí, et al. (+5)
506 [GO] Microbiology Spectrum 2022―Nov―29 Anti-Arbovirus Antibodies Cross-React With Severe Acute Respiratory Syndrome Coronavirus 2 Taweewun Hunsawong, Darunee Buddhari, Kamonthip Rungrojcharoenkit, Rungarun Suthangkornkul, Duangrat Mongkolsirichaikul, Jindarat Lohachanakul, et al. (+11)
507 [GO] Journal of Clinical Microbiology 2022―Nov―29 Sensitivity of Detection and Variant Typing of SARS-CoV-2 in European Laboratories Ramona Mögling, Carlo Fischer, Kamelia R. Stanoeva, Angeliki Melidou, Angélica C. Almeida Campos, Christian Drosten, et al. (+6)
508 [GO] Microbiology Spectrum 2022―Nov―29 Defective Interfering Particles with Broad-Acting Antiviral Activity for Dengue, Zika, Yellow Fever, Respiratory Syncytial and SARS-CoV-2 Virus Infection Min-Hsuan Lin, Dongsheng Li, Bing Tang, Li Li, Andreas Suhrbier, David Harrich, Tao Deng
509 [GO] Microbiology Spectrum 2022―Nov―23 Time Course Evaluation of Enzyme-Linked Immunosorbent Assays Based on Cell-Free Recombinant Proteins for Detection of Antibodies against Middle East Respiratory Syndrome Coronavirus Jun Won Kim, Woo-Jung Park, Sung Soon Kim, Joo-Yeon Lee, Jeong-Sun Yang, Susan Realegeno
510 [GO] Microbiology Spectrum 2022―Nov―23 Porcine Reproductive and Respiratory Syndrome Virus nsp1β Stabilizes HIF-1α to Enhance Viral Replication Yu Pang, Yanrong Zhou, Yuchen Wang, Zheng Sun, Jiao Liu, Chenyu Li, et al. (+3)
511 [GO] Microbiology Spectrum 2022―Nov―21 SARS-CoV-2 Anti-Spike IgG Antibody and ACE2 Receptor Binding Inhibition Levels among Breakthrough Stage Veteran Patients Stephen W. Chensue, Andrew F. Siler, Paul S. Kim, Derek E. Dimcheff, David J. Daghfal, John Prostko, et al. (+4)
512 [GO] Microbiology Spectrum 2022―Nov―21 Clinical Performance of Direct RT-PCR Testing of Raw Saliva for Detection of SARS-CoV-2 in Symptomatic and Asymptomatic Individuals Rosa Castillo-Bravo, Noel Lucca, Linyi Lai, Killian Marlborough, Galina Brychkova, Maryam Shideh Sakhteh, et al. (+13)
513 [GO] Journal of Microbiology and Biology Education 2022―Nov―21 Primer Design for Reverse Transcription-Quantitative PCR Simulation: an Online Lab Exercise Using a SARS-CoV-2 Model Gwantwa Mwakalundwa, Susan Bush Tripp, Cheryl Dvorak, Dawn Foster-Hartnett, Laura J. MacDonald
514 [GO] Microbiology Spectrum 2022―Nov―21 Tracing the First Days of the SARS-CoV-2 Pandemic in Greece and the Role of the First Imported Group of Travelers Maria Bousali, Vasiliki Pogka, Giannis Vatsellas, Theodoros Loupis, Emmanouil I. Athanasiadis, Katerina Zoi, et al. (+5)
515 [GO] Journal of Virology 2022―Nov―21 Erratum for Tan et al., “Dissecting Naturally Arising Amino Acid Substitutions at Position L452 of SARS-CoV-2 Spike” Toong Seng Tan, Mako Toyoda, Hirotaka Ode, Godfrey Barabona, Hiroshi Hamana, Mizuki Kitamatsu, et al. (+4)
516 [GO] Microbiology Spectrum 2022―Nov―21 Two-Period Study Results from a Large Italian Hospital Laboratory Attesting SARS-CoV-2 Variant PCR Assay Evolution Flora Marzia Liotti, Flavio De Maio, Chiara Ippoliti, Giulia Santarelli, Francesca Romana Monzo, Michela Sali, et al. (+5)
517 [GO] Microbiology Spectrum 2022―Nov―21 Global Phylogeny and F Virulence Plasmid Carriage in Pandemic Escherichia coli ST1193 Ethan R. Wyrsch, Rhys N. Bushell, Marc S. Marenda, Glenn F. Browning, Steven P. Djordjevic, Cheryl P. Andam
518 [GO] mBio 2022―Nov―16 Inactivated Vaccine-Induced SARS-CoV-2 Variant-Specific Immunity in Children Jorge A. Soto, Felipe Melo-González, Cristián Gutierrez-Vera, Bárbara M. Schultz, Roslye V. Berríos-Rojas, Daniela Rivera-Pérez, et al. (+131)
519 [GO] Microbiology Spectrum 2022―Nov―15 Selection of Ideal Reference Genes for Gene Expression Analysis in COVID-19 and Mucormycosis Sunil Kumar, Ayaan Ahmad, Namrata Kushwaha, Niti Shokeen, Sheetal Negi, Kamini Gautam, et al. (+9)
520 [GO] mSphere 2022―Nov―15 SARS-CoV-2 Genomic Diversity in Households Highlights the Challenges of Sequence-Based Transmission Inference Emily E. Bendall, Gabriela Paz-Bailey, Gilberto A. Santiago, Christina A. Porucznik, Joseph B. Stanford, Melissa S. Stockwell, et al. (+9)
521 [GO] Antimicrobial Agents and Chemotherapy 2022―Nov―14 Lancemaside A from Codonopsis lanceolata: Studies on Antiviral Activity and Mechanism of Action against SARS-CoV-2 and Its Variants of Concern Tai Young Kim, Sangeun Jeon, Meehyun Ko, Young Eun Du, So-Ri Son, Dae Sik Jang, et al. (+2)
522 [GO] Microbiology Spectrum 2022―Nov―14 Serum Fc-Mediated Monocyte Phagocytosis Activity Is Stable for Several Months after SARS-CoV-2 Asymptomatic and Mildly Symptomatic Infection Sindhu Vangeti, Sivakumar Periasamy, Peifang Sun, Corey A. Balinsky, Avinash S. Mahajan, Natalia A. Kuzmina, et al. (+22)
523 [GO] Microbiology Resource Announcements 2022―Nov―14 Coding Complete Genome Sequence of the SARS-CoV-2 Virus Strain, Variant B.1.1, Sampled from Kazakhstan Yerbol Burashev, Bekbolat Usserbayev, Lespek Kutumbetov, Yergali Abduraimov, Markhabat Kassenov, Aslan Kerimbayev, et al. (+6)
524 [GO] Microbiology Spectrum 2022―Nov―10 Genetic Study of SARS-CoV-2 Non Structural Protein 12 in COVID-19 Patients Non Responders to Remdesivir Marta Santos Bravo, Rodrigo Alonso, Dafne Soria, Sonsoles Sánchez Palomino, Ángela Sanzo Machuca, Cristina Rodríguez, et al. (+20)
525 [GO] Microbiology Spectrum 2022―Nov―10 Molecular Characteristics and Pathogenicity of a Novel Recombinant Porcine Reproductive and Respiratory Syndrome Virus Strain from NADC30-, NADC34-, and JXA1-Like Strains That Emerged in China Jiankui Liu, Chen Liu, Ye Xu, Yuan Yang, Jiarui Li, Ailing Dai, et al. (+4)
526 [GO] Microbiology Spectrum 2022―Nov―09 Self-Reported Long COVID and Its Association with the Presence of SARS-CoV-2 Antibodies in a Danish Cohort up to 12 Months after Infection Kamille Fogh, Tine Graakjær Larsen, Cecilie B. Hansen, Rasmus B. Hasselbalch, Alexandra R. R. Eriksen, Henning Bundgaard, et al. (+8)
527 [GO] Journal of Virology 2022―Nov―09 The P681H Mutation in the Spike Glycoprotein of the Alpha Variant of SARS-CoV-2 Escapes IFITM Restriction and Is Necessary for Type I Interferon Resistance Maria Jose Lista, Helena Winstone, Harry D. Wilson, Adam Dyer, Suzanne Pickering, Rui Pedro Galao, et al. (+12)
528 [GO] Microbiology Spectrum 2022―Nov―09 Limited Impact of SARS-CoV-2 on the Human Naso-Oropharyngeal Microbiota in Hospitalized Patients Christopher K. C. Lai, Man Kit Cheung, Grace C. Y. Lui, Lowell Ling, Jason Y. K. Chan, Rita W. Y. Ng, et al. (+7)
529 [GO] Microbiology Spectrum 2022―Nov―08 Detection of SARS-CoV-2 in Saliva and Nasopharyngeal Swabs According to Viral Variants Maud Salmona, Marie-Laure Chaix, Linda Feghoul, Nadia Mahjoub, Sarah Maylin, Nathalie Schnepf, et al. (+12)
530 [GO] Microbiology Spectrum 2022―Nov―08 Comparison of Nasopharyngeal and Saliva Swab Nucleic Acid Amplification and Rapid Antigen Testing To Detect Omicron SARS-CoV-2 Variant of Concern: a Prospective Clinical Trial (OMICRON) Antonios Kritikos, Giorgia Caruana, Catherine Lazor-Blanchet, Michael Currat, Jean-Daniel Chiche, Peter Vollenweider, et al. (+4)
531 [GO] Microbiology Spectrum 2022―Nov―07 Use of a Bacterial Artificial Chromosome to Generate Recombinant SARS-CoV-2 Expressing Robust Levels of Reporter Genes Chengjin Ye, Luis Martinez-Sobrido, Daniel R. Perez
532 [GO] Journal of Virology 2022―Nov―07 Analysis of the Prevalence of Binding and Neutralizing Antibodies against 39 Human Adenovirus Types in Student Cohorts Reveals Low-Prevalence Types and a Decline in Binding Antibody Levels during the SARS-CoV-2 Pandemic Xiaoyan Wang, Leonie Kerkmann, Mario Hetzel, Sonja Windmann, Mirko Trilling, Wenli Zhang, et al. (+3)
533 [GO] Microbiology Spectrum 2022―Nov―07 Rapid SARS-CoV-2 Variants Enzymatic Detection (SAVED) by CRISPR-Cas12a Jun Yang, Nilakshi Barua, Md Nannur Rahman, Carmen Li, Norman Lo, Kai Yan Yeong, et al. (+9)
534 [GO] mBio 2022―Nov―03 Inhalation of Low Molecular Weight Heparins as Prophylaxis against SARS-CoV-2 Julia Eder, Marta Bermejo-Jambrina, Killian E. Vlaming, Tanja M. Kaptein, Viktoria Zaderer, E. Marleen Kemper, et al. (+6)
535 [GO] Microbiology Spectrum 2022―Nov―03 Ubiquitination of SARS-CoV-2 ORF7a Prevents Cell Death Induced by Recruiting BclXL To Activate ER Stress Zhixin Liu, Yanan Fu, Yanping Huang, Feng Zeng, Jingjing Rao, Xiao Xiao, et al. (+7)
536 [GO] mSphere 2022―Nov―02 Mucosal and Systemic Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination Determined by Severity of Primary Infection Mohammad M. Sajadi, Amber Myers, James Logue, Saman Saadat, Narjes Shokatpour, James Quinn, et al. (+12)
537 [GO] Microbiology Spectrum 2022―Nov―01 Kappa Values in Testing the Concordance: Comments on a Recent Article about Nasopharyngeal Swabs for SARS-CoV-2 Detection Ming Li, Chi Zhang, Tianfei Yu, Eleanor A. Powell
538 [GO] Microbiology Spectrum 2022―Nov―01 Reply to Li et al., “Kappa Values in Testing the Concordance: Comments on a Recent Article about Nasopharyngeal Swabs for SARS-CoV-2 Detection” Cody Callahan, Sarah Ditelberg, Sanjucta Dutta, Nancy Littlehale, Annie Cheng, Kristin Kupczewski, et al. (+5)
539 [GO] Microbiology Spectrum 2022―Nov―01 Omicron Wave SARS-CoV-2 Diagnosis: Evaluation of Saliva, Anterior Nasal, and Nasopharyngeal Swab Samples Marion Migueres, Jean-Michel Mansuy, Sandrine Vasseur, Nicolas Claverie, Catherine Lougarre, Françoise Soulier, et al. (+3)
540 [GO] Microbiology Spectrum 2022―Nov―01 Characterization and Function of Glycans on the Spike Proteins of SARS-CoV-2 Variants of Concern Luping Zheng, Ke Wang, Minghai Chen, Fujun Qin, Chuang Yan, Xian-En Zhang, Holly Ramage
541 [GO] Microbiology Spectrum 2022―Nov―01 Antigenic Characterization and Pandemic Risk Assessment of North American H1 Influenza A Viruses Circulating in Swine Divya Venkatesh, Tavis K. Anderson, J. Brian Kimble, Jennifer Chang, Sara Lopes, Carine K. Souza, et al. (+7)
542 [GO] Microbiology Spectrum 2022―Oct―31 Serum Proteomic Analysis for New Types of Long-Term Persistent COVID-19 Patients in Wuhan Cuidan Li, Liya Yue, Yingjiao Ju, Jie Wang, Mengfan Chen, Hao Lu, et al. (+11)
543 [GO] Microbiology Spectrum 2022―Oct―31 Impact of Sex and Age on mRNA COVID-19 Vaccine-Related Side Effects in Japan Masahiko Mori, Aiko Yokoyama, Ayami Shichida, Kimiko Sasuga, Takafumi Maekawa, Tadayoshi Moriyama, Daniela S. Rajao
544 [GO] Microbiology Spectrum 2022―Oct―31 Generation of Angiotensin-Converting Enzyme 2/Transmembrane Protease Serine 2-Double-Positive Human Induced Pluripotent Stem Cell-Derived Spheroids for Anti-Severe Acute Respiratory Syndrome Coronavirus 2 Drug Evaluation Nobuyo Higashi-Kuwata, Shigeharu G. Yabe, Satsuki Fukuda, Junko Nishida, Miwa Tamura-Nakano, Shin-ichiro Hattori, et al. (+3)
545 [GO] Journal of Virology 2022―Oct―31 Retraction for Siu et al., “Middle East Respiratory Syndrome Coronavirus 4a Protein Is a Double-Stranded RNA-Binding Protein That Suppresses PACT-Induced Activation of RIG-I and MDA5 in the Innate Antiviral Response” Kam-Leung Siu, Man Lung Yeung, Kin-Hang Kok, Kit-San Yuen, Chun Kew, Pak-Yin Lui, et al. (+5)
546 [GO] Journal of Virology 2022―Oct―31 Retraction for Lau et al., “Coexistence of Different Genotypes in the Same Bat and Serological Characterization of Rousettus Bat Coronavirus HKU9 Belonging to a Novel Betacoronavirus Subgroup” Susanna K. P. Lau, Rosana W. S. Poon, Beatrice H. L. Wong, Ming Wang, Yi Huang, Huifang Xu, et al. (+7)
547 [GO] Journal of Virology 2022―Oct―31 Retraction for Woo et al., “Discovery of a Novel Bottlenose Dolphin Coronavirus Reveals a Distinct Species of Marine Mammal Coronavirus in Gammacoronavirus Patrick C. Y. Woo, Susanna K. P. Lau, Carol S. F. Lam, Alan K. L. Tsang, Suk-Wai Hui, Rachel Y. Y. Fan, et al. (+2)
548 [GO] mBio 2022―Oct―31 Commentary on “Outcomes of Convalescent Plasma with Defined High versus Lower Neutralizing Antibody Titers against SARS-CoV-2 among Hospitalized Patients: CoronaVirus Inactivating Plasma (CoVIP) Study” Michael J. Joyner, Nigel Paneth
549 [GO] Journal of Clinical Microbiology 2022―Oct―31 Retraction for Woo et al., “False-Positive Results in a Recombinant Severe Acute Respiratory Syndrome-Associated Coronavirus (SARS-CoV) Nucleocapsid Enzyme-Linked Immunosorbent Assay Due to HCoV-OC43 and HCoV-229E Rectified by Western Blotting with Recombinant SARS-CoV Spike Polypeptide” Patrick C. Y. Woo, Susanna K. P. Lau, Beatrice H. L. Wong, Kwok-Hung Chan, Wai-Ting Hui, Grace S. W. Kwan, et al. (+3)
550 [GO] mBio 2022―Oct―31 Neuropilin-1 Mediates SARS-CoV-2 Infection of Astrocytes in Brain Organoids, Inducing Inflammation Leading to Dysfunction and Death of Neurons Weili Kong, Mauricio Montano, Michael J. Corley, Ekram Helmy, Hirofumi Kobayashi, Martin Kinisu, et al. (+8)
551 [GO] Microbiology Spectrum 2022―Oct―31 HCV Infection Increases the Expression of ACE2 Receptor, Leading to Enhanced Entry of Both HCV and SARS-CoV-2 into Hepatocytes and a Coinfection State Tom Domovitz, Samer Ayoub, Michal Werbner, Joel Alter, Lee Izhaki Tavor, Yfat Yahalom-Ronen, et al. (+8)
552 [GO] Journal of Clinical Microbiology 2022―Oct―31 Analytical Sensitivity of Lateral Flow Devices against SARS-CoV-2 Omicron Subvariants BA.4, BA.5, and BA.2.75 Charlene Mackenzie, Mitchell Batty, Georgina Papadakis, Laura Stevens, Yano Yoga, George Taiaroa, et al. (+9)
553 [GO] Journal of Clinical Microbiology 2022―Oct―31 SARS-CoV-2 Transmission from Human to Pet and Suspected Transmission from Pet to Human, Thailand Chutchai Piewbang, Panida Poonsin, Pattiya Lohavicharn, Sabrina Wahyu Wardhani, Wichan Dankaona, Jiratchaya Puenpa, et al. (+3)
554 [GO] Microbiology Spectrum 2022―Oct―31 SARS-CoV-2: Challenges in Reconverting Diagnostic Laboratories to Combat the Pandemic Hugo Alberto Barrera Saldaña, Carolina Rivera Santiago, Raúl Rodríguez Palacios, Tulip A. Jhaveri
555 [GO] Microbiology Spectrum 2022―Oct―27 Secondary Bacterial Infections in Mucormycosis-COVID-19 Cases: Experience during the Second COVID-19 Wave in India Neha Sharad, Smriti Srivastava, Parul Singh, Mamta Puraswani, Sharad Srivastav, Rajesh Malhotra, et al. (+3)
556 [GO] Microbiology Spectrum 2022―Oct―27 Influenza Infection in Ferrets with SARS-CoV-2 Infection History Caroline Vilas Boas de Melo, Florence Peters, Harry van Dijken, Stefanie Lenz, Koen van de Ven, Lisa Wijsman, et al. (+6)
557 [GO] Microbiology Spectrum 2022―Oct―27 Screening of the Medicines for Malaria Venture Pandemic Response Box for Discovery of Antivirulent Drug against Pseudomonas aeruginosa Markéta Macho, Subhasish Saha, Grzegorz Konert, Avik Banerjee, Daniela Ewe, Pavel Hrouzek, et al. (+3)
558 [GO] Antimicrobial Agents and Chemotherapy 2022―Oct―26 Pharmacokinetics of Nirmatrelvir and Ritonavir in COVID-19 Patients with End-Stage Renal Disease on Intermittent Hemodialysis Tilman Lingscheid, Martina Kinzig, Anne Krüger, Nils Müller, Georg Bölke, Pinkus Tober-Lau, et al. (+6)
559 [GO] Applied and Environmental Microbiology 2022―Oct―26 MixviR: an R Package for Exploring Variation Associated with Genomic Sequence Data from Environmental SARS-CoV-2 and Other Mixed Microbial Samples Michael G. Sovic, Francesca Savona, Zuzana Bohrerova, Seth A. Faith, Nicole R. Buan
560 [GO] Microbiology Spectrum 2022―Oct―26 Evaluation of Four Strategies for SARS-CoV-2 Detection: Characteristics and Prospects Yuqing Chen, Yu Ma, Yanxi Han, Zhenli Diao, Lu Chang, Jinming Li, et al. (+2)
561 [GO] Microbiology Spectrum 2022―Oct―26 Morning SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher Viral Loads in Saliva and Nasal Swabs upon Waking Alexander Viloria Winnett, Michael K. Porter, Anna E. Romano, Emily S. Savela, Reid Akana, Natasha Shelby, et al. (+11)
562 [GO] Microbiology Resource Announcements 2022―Oct―19 Genome Sequence of Bovine Coronavirus Variants from the Nasal Virome of Irish Beef Suckler and Pre-weaned Dairy Calves Clinically Diagnosed with Bovine Respiratory Disease Kerrie Ní Dhufaigh, Matthew McCabe, Paul Cormican, Inmaculada Cuevas-Gomez, Mark McGee, Tara McDaneld, et al. (+2)
563 [GO] mBio 2022―Oct―18 Casirivimab and Imdevimab Treatment Reduces Viral Load and Improves Clinical Outcomes in Seropositive Hospitalized COVID-19 Patients with Nonneutralizing or Borderline Neutralizing Antibodies Andrea T. Hooper, Selin Somersan-Karakaya, Shane E. McCarthy, Eleftherios Mylonakis, Shazia Ali, Jingning Mei, et al. (+9)
564 [GO] Microbiology Spectrum 2022―Oct―18 Design and Implementation of Improved SARS-CoV-2 Diagnostic Assays To Mitigate the Impact of Genomic Mutations on Target Failure: the Xpert Xpress SARS-CoV-2 Experience Bethany L. Burns, Domonique Moody, Zheng Jin Tu, Joy Nakitandwe, Jay E. Brock, David Bosler, et al. (+4)
565 [GO] Microbiology Spectrum 2022―Oct―18 Comparison of BinaxNOW and SARS-CoV-2 qRT-PCR Detection of the Omicron Variant from Matched Anterior Nares Swabs Lena Landaverde, Jacquelyn Turcinovic, Lynn Doucette-Stamm, Kevin Gonzales, Judy Platt, John H. Connor, et al. (+2)
566 [GO] Microbiology Spectrum 2022―Oct―17 Using a 29-mRNA Host Response Classifier To Detect Bacterial Coinfections and Predict Outcomes in COVID-19 Patients Presenting to the Emergency Department Nikhil Ram-Mohan, Angela J. Rogers, Catherine A. Blish, Kari C. Nadeau, Elizabeth J. Zudock, David Kim, et al. (+53)
567 [GO] Microbiology Resource Announcements 2022―Oct―17 Genome Sequence of an Early Imported Case of SARS-CoV-2 Delta Variant (B.1.617.2 AY.122) in Iraq in April 2021 Nihad A. M. Al-Rashedi, Hussein Alburkat, Murad G. Munahi, Ali H. Jasim, Batool Kadham Salman, Basel Saber Oda, et al. (+6)
568 [GO] Microbiology Spectrum 2022―Oct―17 Estimation of SARS-CoV-2 Neutralizing Activity and Protective Immunity in Different Vaccine Types Using Three Surrogate Virus Neutralization Test Assays and Two Semiquantitative Binding Assays Targeting the Receptor-Binding Domain Beomki Lee, Jae-Hoon Ko, Kyoung Hwa Lee, Yong Chan Kim, Young Goo Song, Yoon Soo Park, et al. (+18)
569 [GO] Microbiology Spectrum 2022―Oct―13 Persistent Nonviral Plasmid Vector in Nasal Tissues Causes False-Positive SARS-CoV-2 Diagnostic Nucleic Acid Tests Ingrid A. Beck, Sheila Styrchak, Leslie Miller, Fred Mast, Vladimir Vigdorovich, Winnie Yeung, et al. (+15)
570 [GO] Journal of Microbiology and Biology Education 2022―Oct―13 A Lesson from the Pandemic: Utilizing Digital Tools To Support Student Engagement during Instructional Assistant-Led Sessions Christina N. Morra, Robert Fultz, Samiksha A. Raut, Pamela Ann Marshall
571 [GO] Microbiology Spectrum 2022―Oct―12 One-Year Follow-Up of COVID-19 Patients Indicates Substantial Assay-Dependent Differences in the Kinetics of SARS-CoV-2 Antibodies Alexander E. Egger, Sabina Sahanic, Andreas Gleiss, Franz Ratzinger, Barbara Holzer, Christian Irsara, et al. (+14)
572 [GO] mSphere 2022―Oct―11 SARS-CoV-2 RNA Is Readily Detectable at Least 8 Months after Shedding in an Isolation Facility David A. Coil, Randi Pechacek, Mo Kaze, Rogelio Zuniga-Montanez, Roque G. Guerrero, Jonathan A. Eisen, et al. (+3)
573 [GO] Microbiology Spectrum 2022―Oct―11 SARS-CoV-2-Neutralizing Humoral IgA Response Occurs Earlier but Is Modest and Diminishes Faster than IgG Response Yuki Takamatsu, Kazumi Omata, Yosuke Shimizu, Noriko Kinoshita-Iwamoto, Mari Terada, Tetsuya Suzuki, et al. (+6)
574 [GO] Microbiology Spectrum 2022―Oct―11 Attenuated Porcine Reproductive and Respiratory Syndrome Virus Regains Its Fatal Virulence by Serial Passaging in Pigs or Porcine Alveolar Macrophages To Increase Its Adaptation to Target Cells Jingjing Wang, Mengsi Zhang, Xiaochun Cui, Xiang Gao, Weifeng Sun, Xinna Ge, et al. (+6)
575 [GO] Microbiology Spectrum 2022―Oct―10 Erratum for Nikiforuk et al., “Performance of Immunoglobulin G Serology on Finger Prick Capillary Dried Blood Spot Samples to Detect a SARS-CoV-2 Antibody Response” Aidan M. Nikiforuk, Brynn McMillan, Sofia R. Bartlett, Ana Citlali Márquez, Tamara Pidduck, Jesse Kustra, et al. (+10)
576 [GO] Journal of Virology 2022―Oct―10 Dissecting Naturally Arising Amino Acid Substitutions at Position L452 of SARS-CoV-2 Spike Toong Seng Tan, Mako Toyoda, Hirotaka Ode, Godfrey Barabona, Hiroshi Hamana, Mizuki Kitamatsu, et al. (+5)
577 [GO] Microbiology Spectrum 2022―Oct―06 Superinfection with SARS-CoV-2 Has Deleterious Effects on Mycobacterium bovis BCG Immunity and Promotes Dissemination of Mycobacterium tuberculosis Rachel E. Hildebrand, Shaswath Sekar Chandrasekar, Mariah Riel, B뫊rr J. B. Touray, Sophie A. Aschenbroich, Adel M. Talaat, G. Marcela Rodriguez
578 [GO] mBio 2022―Oct―05 The Integral Membrane Protein ZMPSTE24 Protects Cells from SARS-CoV-2 Spike-Mediated Pseudovirus Infection and Syncytia Formation Khurts Shilagardi, Eric D. Spear, Rachy Abraham, Diane E. Griffin, Susan Michaelis, Michael S. Diamond
579 [GO] mBio 2022―Oct―03 Correction for Zhao et al., “Gasdermin D Inhibits Coronavirus Infection by Promoting the Noncanonical Secretion of Beta Interferon” Liyuan Zhao, Liang Li, Mei Xue, Xiang Liu, Chengfan Jiang, Wenzhe Wang, et al. (+3)
580 [GO] Microbiology Spectrum 2022―Oct―03 Combinations of Host- and Virus-Targeting Antiviral Drugs Confer Synergistic Suppression of SARS-CoV-2 Jessica Wagoner, Shawn Herring, Tien-Ying Hsiang, Aleksandr Ianevski, Scott B. Biering, Shuang Xu, et al. (+8)
581 [GO] Microbiology Spectrum 2022―Oct―03 Neutralizing SARS-CoV-2 Spike Antibodies against Omicron in Paired Samples after Two or Three Doses of mRNA Vaccine Amanda K. Debes, Shaoming Xiao, Emily R. Egbert, Patrizio Caturegli, Avinash Gadala, Elizabeth Colantuoni, et al. (+4)
582 [GO] mSphere 2022―Sep―29 Concordance of SARS-CoV-2 Antibody Results during a Period of Low Prevalence Cheryl N. Miller, Keri N. Althoff, David J. Schlueter, Hoda Anton-Culver, Qingxia Chen, Shawn Garbett, et al. (+14)
583 [GO] Microbiology Spectrum 2022―Sep―29 Interaction of HDAC2 with SARS-CoV-2 NSP5 and IRF3 Is Not Required for NSP5-Mediated Inhibition of Type I Interferon Signaling Pathway Nenavath Gopal Naik, See-Chi Lee, Beatriz H. S. Veronese, Zhe Ma, Zsolt Toth, Clinton J. Jones
584 [GO] Microbiology Spectrum 2022―Sep―28 Reverse Transcription-Loop-Mediated Isothermal Amplification-CRISPR-Cas13a Technology as a Promising Diagnostic Tool for SARS-CoV-2 Concha Ortiz-Cartagena, Laura Fernández-García, Lucia Blasco, Olga Pacios, Inés Bleriot, María López, et al. (+3)
585 [GO] Microbiology Spectrum 2022―Sep―28 Neutralization of SARS-CoV-2 Omicron and Delta Variants in Relation to Vaccine-Induced Antibody Levels in Kidney Transplant Recipients and Healthy Controls Rune M. Pedersen, Line L. Bang, Ditte S. Tornby, Helene Kierkegaard, Anna C. Nilsson, Isik S. Johansen, et al. (+9)
586 [GO] Microbiology Spectrum 2022―Sep―27 Infection and Transmission of SARS-CoV-2 B.1.617.2 Lineage (Delta Variant) among Fully Vaccinated Individuals Leonardo C. Caserta, Mathias Martins, Brittany Cronk, Renee Anderson, Harry Eldridge, Deidre Gallow, et al. (+4)
587 [GO] Microbiology Spectrum 2022―Sep―26 Randomized, Double-Blind, Placebo-Controlled Trial of a Throat Spray with Selected Lactobacilli in COVID-19 Outpatients Ilke De Boeck, Eline Cauwenberghs, Irina Spacova, Thies Gehrmann, Tom Eilers, Lize Delanghe, et al. (+18)
588 [GO] Microbiology Spectrum 2022―Sep―26 Multiplex PCR Detection of Respiratory Tract Infections in SARS-CoV-2-Negative Patients Admitted to the Emergency Department: an International Multicenter Study during the COVID-19 Pandemic Maelys Duclos, Benjamin Hommel, Florence Allantaz, Michaela Powell, Brunella Posteraro, Maurizio Sanguinetti, Maria Grazia Cusi
589 [GO] mBio 2022―Sep―22 Comparative Assessment of Severe Acute Respiratory Syndrome Coronavirus 2 Variants in the Ferret Model Joanna A. Pulit-Penaloza, Jessica A. Belser, Xiangjie Sun, Claudia Pappas, Nicole Brock, Troy J. Kieran, et al. (+11)
590 [GO] mBio 2022―Sep―22 Outcomes of Convalescent Plasma with Defined High versus Lower Neutralizing Antibody Titers against SARS-CoV-2 among Hospitalized Patients: CoronaVirus Inactivating Plasma (CoVIP) Study Luther A. Bartelt, Alena J. Markmann, Bridget Nelson, Jessica Keys, Heather Root, Heather I. Henderson, et al. (+16)
591 [GO] Microbiology Spectrum 2022―Sep―22 Association of Results of Four Lateral Flow Antibody Tests with Subsequent SARS-CoV-2 Infection Lucy Findlater, Adam Trickey, Hayley E. Jones, Amy Trindall, Sian Taylor-Phillips, Ranya Mulchandani, et al. (+3)
592 [GO] Journal of Clinical Microbiology 2022―Sep―21 Photo Quiz: Oral Finding in a 50-Year-Old Man Hospitalized for COVID-19 D. Dupont, J. C. Richard, M. Wallon, S. Debord-Peguet, F. Persat, Erik Munson
593 [GO] Microbiology Spectrum 2022―Sep―21 Comparison of SARS-CoV-2 Detection from Saliva Sampling and Oropharyngeal Swab Mia de Laurent Clemmensen, Kamilla Kolding Bendixen, Katharina Flugt, Pernille Pilgaard, Ulf Bech Christensen, Miguel Angel Martinez
594 [GO] mBio 2022―Sep―20 Building a Resilient Scientific Network for COVID-19 and Beyond N. Esther Babady, Rachel M. Burckhardt, Florian Krammer, Penny L. Moore, Lynn W. Enquist, Rino Rappuoli
595 [GO] Microbiology Spectrum 2022―Sep―20 Dual Monoclonal Antibodies on Sars-Cov-2 Alpha and Delta Variants: Clinical and Virological Efficacy Valentine Marie Ferré, Nathan Peiffer-Smadja, Laura Kramer, Romain Coppée, Aïcha Kante, Margaux Debarge, et al. (+11)
596 [GO] mBio 2022―Sep―20 SARS-CoV-2 Diverges from Other Betacoronaviruses in Only Partially Activating the IRE1α/XBP1 Endoplasmic Reticulum Stress Pathway in Human Lung-Derived Cells Long C. Nguyen, David M. Renner, Diane Silva, Dongbo Yang, Nicholas A. Parenti, Kaeri M. Medina, et al. (+20)
597 [GO] Microbiology Spectrum 2022―Sep―20 Utilization of the Abbott SARS-CoV-2 IgG II Quant Assay To Identify High-Titer Anti-SARS-CoV-2 Neutralizing Plasma against Wild-Type and Variant SARS-CoV-2 Viruses Yi-Chan J. Lin, David H. Evans, Ninette F. Robbins, Guillermo Orjuela, Queenie Hu, Reuben Samson, et al. (+9)
598 [GO] Microbiology Spectrum 2022―Sep―20 Decreased Sensitivity of Rapid Antigen Test Is Associated with a Lower Viral Load of Omicron than Delta SARS-CoV-2 Variant Théophile Cocherie, Mathilda Bastide, Soraya Sakhi, Karen Zafilaza, Philippe Flandre, Valentin Leducq, et al. (+7)
599 [GO] Microbiology Spectrum 2022―Sep―19 Longitudinal Serological Surveillance for COVID-19 Antibodies after Infection and Vaccination Christopher McGee, Min Shi, John House, Anna Drude, Gladys Gonzalez, Negin Martin, et al. (+13)
600 [GO] Journal of Virology 2022―Sep―19 The Spike-Stabilizing D614G Mutation Interacts with S1/S2 Cleavage Site Mutations To Promote the Infectious Potential of SARS-CoV-2 Variants Stacy Gellenoncourt, Nell Saunders, Rémy Robinot, Lucas Auguste, Maaran Michael Rajah, Jérôme Kervevan, et al. (+8)
601 [GO] Microbiology Spectrum 2022―Sep―19 Correlation of SARS-CoV-2 Viral Neutralizing Antibody Titers with Anti-Spike Antibodies and ACE-2 Inhibition among Vaccinated Individuals Brian Grunau, Martin Prusinkiewicz, Michael Asamoah-Boaheng, Liam Golding, Pascal M. Lavoie, Martin Petric, et al. (+9)
602 [GO] Microbiology Spectrum 2022―Sep―15 Accessible and Adaptable Multiplexed Real-Time PCR Approaches to Identify SARS-CoV-2 Variants of Concern Ting Yan, Ye Xu, Rongrong Zheng, Xiaohong Zeng, Zehui Chen, Su Lin, et al. (+5)
603 [GO] Applied and Environmental Microbiology 2022―Sep―14 Genetic Load of SARS-CoV-2 in Aerosols Collected in Operating Theaters María Barberá-Riera, Simona Porru, Manuela Barneo-Muñoz, Andrea Villasante Ferrer, Paula Carrasco, Rosa de Llanos, et al. (+3)
604 [GO] Antimicrobial Agents and Chemotherapy 2022―Sep―13 A Randomized Phase 2/3 Study of Ensitrelvir, a Novel Oral SARS-CoV-2 3C-Like Protease Inhibitor, in Japanese Patients with Mild-to-Moderate COVID-19 or Asymptomatic SARS-CoV-2 Infection: Results of the Phase 2a Part Hiroshi Mukae, Hiroshi Yotsuyanagi, Norio Ohmagari, Yohei Doi, Takumi Imamura, Takuhiro Sonoyama, et al. (+7)
605 [GO] Microbiology Spectrum 2022―Sep―13 Longitudinal Evaluation of the QuantiFERON-TB Gold Plus Assay in Hospitalized COVID-19 Patients with a First Indeterminate Result: Resolution of Inflammation and Restoration of T-Lymphocyte Counts and Interferon-Gamma Production Grazia Alessio, Alessandra Imeneo, Andrea Di Lorenzo, Benedetta Rossi, Chiara Sorace, Mirko Compagno, et al. (+9)
606 [GO] Antimicrobial Agents and Chemotherapy 2022―Sep―12 Safety, Tolerability, and Pharmacokinetics of the Novel Antiviral Agent Ensitrelvir Fumaric Acid, a SARS-CoV-2 3CL Protease Inhibitor, in Healthy Adults Ryosuke Shimizu, Takuhiro Sonoyama, Takahiro Fukuhara, Aya Kuwata, Yumiko Matsuo, Ryuji Kubota
607 [GO] Microbiology Spectrum 2022―Sep―08 SARS-CoV-2 Variant Delta Potently Suppresses Innate Immune Response and Evades Interferon-Activated Antiviral Responses in Human Colon Epithelial Cells Dixit Tandel, Vishal Sah, Nitesh Kumar Singh, Poojitha Sai Potharaju, Divya Gupta, Sauhard Shrivastava, et al. (+3)
608 [GO] Journal of Virology 2022―Sep―08 A New Long Noncoding RNA, MAHAT, Inhibits Replication of Porcine Reproductive and Respiratory Syndrome Virus by Recruiting DDX6 To Bind to ZNF34 and Promote an Innate Immune Response Yuming Liu, Xing Liu, Juan Bai, Yangyang Sun, Hans Nauwynck, Xianwei Wang, et al. (+3)
609 [GO] Journal of Virology 2022―Sep―07 A Recombinant VSV-Based Bivalent Vaccine Effectively Protects against Both SARS-CoV-2 and Influenza A Virus Infection Zhujun Ao, Maggie J. Ouyang, Titus A. Olukitibi, Bryce Warner, Robert Vendramelli, Thang Truong, et al. (+7)
610 [GO] Microbiology Spectrum 2022―Sep―07 Murine Hepatitis Virus, a Biosafety Level 2 Model for SARS-CoV-2, Can Remain Viable on Meat and Meat Packaging Materials for at Least 48 Hours Austin B. Featherstone, Amanda Claire Brown, Sapna Chitlapilly Dass, Sandeep Tamber
611 [GO] Microbiology Spectrum 2022―Sep―07 Time Series Analysis of SARS-CoV-2 Genomes and Correlations among Highly Prevalent Mutations Neha Periwal, Shravan B. Rathod, Sankritya Sarma, Gundeep S. Johar, Avantika Jain, Ravi P. Barnwal, et al. (+5)
612 [GO] Microbiology Spectrum 2022―Sep―07 B.1.351 SARS-CoV-2 Variant Exhibits Higher Virulence but Less Viral Shedding than That of the Ancestral Strain in Young Nonhuman Primates Yu Bai, Qian He, Jinghuan Yang, Shuaiyao Lu, Qunying Mao, Fan Gao, et al. (+12)
613 [GO] Microbiology Spectrum 2022―Sep―07 A Robust, Highly Multiplexed Mass Spectrometry Assay to Identify SARS-CoV-2 Variants Matthew M. Hernandez, Radhika Banu, Paras Shrestha, Ana S. Gonzalez-Reiche, Adriana van de Guchte, Keith Farrugia, et al. (+29)
614 [GO] Microbiology Spectrum 2022―Sep―07 Rapid Evaluation of Vaccine Booster Effectiveness against SARS-CoV-2 Variants Hoi Lok Cheng, Sing Mei Lim, Huan Jia, Ming Wei Chen, Say Yong Ng, Xiaohong Gao, et al. (+11)
615 [GO] Microbiology Spectrum 2022―Sep―06 A Multicenter Clinical Diagnostic Accuracy Study of SureStatus, an Affordable, WHO Emergency Use-Listed, Rapid, Point-Of-Care Antigen-Detecting Diagnostic Test for SARS-CoV-2 Lisa J. Krüger, Andreas K. Lindner, Mary Gaeddert, Frank Tobian, Julian Klein, Salome Steinke, et al. (+51)
616 [GO] mBio 2022―Aug―31 Correction for Merenstein et al., “Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome” Carter Merenstein, Guanxiang Liang, Samantha A. Whiteside, Ana G. Cobián-Güemes, Madeline S. Merlino, Louis J. Taylor, et al. (+15)
617 [GO] Microbiology Spectrum 2022―Aug―31 Versatile β-Catenin Is Crucial for SARS-CoV-2 Infection Sanchari Chatterjee, Supriya Suman Keshry, Soumyajit Ghosh, Amrita Ray, Soma Chattopadhyay, Saumitra Das
618 [GO] mSphere 2022―Aug―30 Aerosolized Hydrogen Peroxide Decontamination of N95 Respirators, with Fit-Testing and Viral Inactivation, Demonstrates Feasibility for Reuse during the COVID-19 Pandemic T. Hans Derr, Melissa A. James, Chad V. Kuny, Devanshi R. Patel, Prem P. Kandel, Cassandra Field, et al. (+6)
619 [GO] Journal of Virology 2022―Aug―30 SARS-CoV-2 Virus Culture, Genomic and Subgenomic RNA Load, and Rapid Antigen Test in Experimentally Infected Syrian Hamsters Cheng Zhang, Huan Cui, Zhendong Guo, Zhaoliang Chen, Fang Yan, Yuanguo Li, et al. (+4)
620 [GO] Microbiology Spectrum 2022―Aug―29 Comparison of the SARS-CoV-2 BD Veritor Nasal Antigen Test with Nasopharyngeal Reverse Transcription-PCR in Symptomatic Patients Paula Koga, Maira Maluf, Fabiane Nunes, Juliana Campos, Lívia Gazarini, Tatiane Borghoff, et al. (+3)
621 [GO] Journal of Clinical Microbiology 2022―Aug―29 Salivary IgAs and Their Role in Mucosal Neutralization of SARS-CoV-2 Variants of Concern Gabriel Diem, Eliott Lafon, Angelika Bauer, Cornelia Lass-Flörl, Markus Reindl, Doris Wilflingseder, et al. (+2)
622 [GO] Microbiology Spectrum 2022―Aug―25 Immunological and Pathological Peculiarity of Severe Acute Respiratory Syndrome Coronavirus 2 Beta Variant Sunhee Lee, Gun Young Yoon, Su Jin Lee, Young-Chan Kwon, Hyun Woo Moon, Yu-Jin Kim, et al. (+8)
623 [GO] Microbiology Spectrum 2022―Aug―25 Reduced Sensitivity of Commercial Spike-Specific Antibody Assays after Primary Infection with the SARS-CoV-2 Omicron Variant David Niklas Springer, Thomas Perkmann, Claudia Maria Jani, Patrick Mucher, Katja Prüger, Rodrig Marculescu, et al. (+14)
624 [GO] Microbiology Spectrum 2022―Aug―25 Boosting with Multiple Doses of mRNA Vaccine after Priming with Two Doses of Protein Subunit Vaccine MVC-COV1901 Elicited Robust Humoral and Cellular Immune Responses against Emerging SARS-CoV-2 Variants Chun-Hsiang Chiu, Yu-Hsiu Chang, Chi-Wei Tao, Feng-Yee Chang, Kuo-Chou Chiu, Tien-Wei Chang, et al. (+2)
625 [GO] Journal of Virology 2022―Aug―24 Adaptive Mutation in the Main Protease Cleavage Site of Feline Coronavirus Renders the Virus More Resistant to Main Protease Inhibitors Zhe Jiao, Yuanyuan Yan, Yixi Chen, Gang Wang, Xiaowei Wang, Lisha Li, et al. (+6)
626 [GO] mBio 2022―Aug―24 Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania Andrew D. Marques, Scott Sherrill-Mix, John K. Everett, Hriju Adhikari, Shantan Reddy, Julie C. Ellis, et al. (+11)
627 [GO] Journal of Virology 2022―Aug―24 Molecular Basis of Mink ACE2 Binding to SARS-CoV-2 and Its Mink-Derived Variants Chao Su, Juanhua He, Pengcheng Han, Bin Bai, Dedong Li, Jian Cao, et al. (+14)
628 [GO] Journal of Virology 2022―Aug―24 The Omicron Variant BA.1.1 Presents a Lower Pathogenicity than B.1 D614G and Delta Variants in a Feline Model of SARS-CoV-2 Infection Mathias Martins, Gabriela M. do Nascimento, Mohammed Nooruzzaman, Fangfeng Yuan, Chi Chen, Leonardo C. Caserta, et al. (+5)
629 [GO] Microbiology Spectrum 2022―Aug―24 Incidence of SARS-CoV-2 Infection during the Omicron Variant Emergence in Southern Vietnam: Prior Infection versus Third-Dose Vaccination Thang Thanh Phan, Tran Bao Nguyen, Quynh-Giao Thi Phung, Vinh Thanh Tran, Toan Trong Ho, Suong Phuoc Pho, et al. (+6)
630 [GO] mBio 2022―Aug―24 Hybrid Immunity Shifts the Fc-Effector Quality of SARS-CoV-2 mRNA Vaccine-Induced Immunity Kathryn A. Bowman, Daniel Stein, Sally Shin, Kathie G. Ferbas, Nicole H. Tobin, Colin Mann, et al. (+7)
631 [GO] Microbiology Spectrum 2022―Aug―24 Protein Kinase C Inhibitors Reduce SARS-CoV-2 Replication in Cultured Cells Changbai Huang, Fei Feng, Yongxia Shi, Wenhui Li, Ziqiao Wang, Yunkai Zhu, et al. (+8)
632 [GO] Journal of Virology 2022―Aug―24 Variations in Cell Surface ACE2 Levels Alter Direct Binding of SARS-CoV-2 Spike Protein and Viral Infectivity: Implications for Measuring Spike Protein Interactions with Animal ACE2 Orthologs Soheila Kazemi, Alberto Domingo López-Muñoz, Jaroslav Hollý, Ling Jin, Jonathan W. Yewdell, Brian P. Dolan, Kanta Subbarao
633 [GO] Microbiology Spectrum 2022―Aug―24 Emergence and Spread of the SARS-CoV-2 Variant of Concern Delta across Different Brazilian Regions Ighor Arantes, Felipe Gomes Naveca, Tiago Gräf, Fábio Miyajima, Helisson Faoro, Gabriel Luz Wallau, et al. (+99)
634 [GO] mBio 2022―Aug―23 Genomic Epidemiology and Serology Associated with a SARS-CoV-2 R.1 Variant Outbreak in New Jersey Barun Mathema, Liang Chen, Pengfei Wang, Marcus H. Cunningham, Jose R. Mediavilla, Kar Fai Chow, et al. (+20)
635 [GO] mBio 2022―Aug―23 SARS-CoV-2 Spike-Binding Antibody Longevity and Protection from Reinfection with Antigenically Similar SARS-CoV-2 Variants John Kubale, Charles Gleason, Juan Manuel Carreño, Komal Srivastava, Gagandeep Singh, Aubree Gordon, et al. (+32)
636 [GO] Microbiology Resource Announcements 2022―Aug―23 Near-Complete Genome Sequence of a SARS-CoV-2 Variant B.1.1.7 Virus Strain Isolated in Kazakhstan Bekbolat Usserbayev, Kunsulu Zakarya, Lespek Kutumbetov, Mukhit Orynbaуev, Kulyaisan Sultankulova, Yergali Abduraimov, et al. (+9)
637 [GO] Journal of Virology 2022―Aug―22 Lethal Swine Acute Diarrhea Syndrome Coronavirus Infection in Suckling Mice Ying Chen, Ren-Di Jiang, Qi Wang, Yun Luo, Mei-Qin Liu, Yan Zhu, et al. (+6)
638 [GO] Microbiology Spectrum 2022―Aug―18 Monitoring SARS-CoV-2 Infection Using a Double Reporter-Expressing Virus Kevin Chiem, Jun-Gyu Park, Desarey Morales Vasquez, Richard K. Plemper, Jordi B. Torrelles, James J. Kobie, et al. (+4)
639 [GO] Journal of Virology 2022―Aug―18 UBR5 Acts as an Antiviral Host Factor against MERS-CoV via Promoting Ubiquitination and Degradation of ORF4b Yuzheng Zhou, Rong Zheng, Donglan Liu, Sixu Liu, Cyrollah Disoma, Shiqin Li, et al. (+21)
640 [GO] Journal of Virology 2022―Aug―17 Loss of Pfizer (BNT162b2) Vaccine-Induced Antibody Responses against the SARS-CoV-2 Omicron Variant in Adolescents and Adults Sneh Lata Gupta, Grace Mantus, Kelly E. Manning, Madison Ellis, Mit Patel, Caroline Rose Ciric, et al. (+11)
641 [GO] Journal of Virology 2022―Aug―16 A Temperature-Sensitive Recombinant of Avian Coronavirus Infectious Bronchitis Virus Provides Complete Protection against Homologous Challenge Sarah Keep, Phoebe Stevenson-Leggett, Giulia Dowgier, Katalin Foldes, Isobel Webb, Albert Fones, et al. (+5)
642 [GO] Journal of Virology 2022―Aug―16 Comprehensive Subcellular Localization of Swine Acute Diarrhea Syndrome Coronavirus Proteins Cong Yuan, Xuepeng Suo, Yueyue Duan, Xiangtong Li, Lei Shi, Liyan Cao, et al. (+4)
643 [GO] Microbiology Resource Announcements 2022―Aug―16 Complete Genome Sequence of an Italian Swine Enteric Coronavirus Strain 77590/2019 Alice Papetti, Paolo Bonilauri, Chiara Chiapponi, Laura Baioni, Maria Beatrice Boniotti, Simon Roux
644 [GO] Microbiology Spectrum 2022―Aug―16 Differential Infectivity of Original and Delta Variants of SARS-CoV-2 in Children Compared to Adults Lauren Garnett, Carmen Tse, Duane Funk, Kerry Dust, Kaylie N. Tran, Adam Hedley, et al. (+4)
645 [GO] Journal of Virology 2022―Aug―16 A Glycosylated RBD Protein Induces Enhanced Neutralizing Antibodies against Omicron and Other Variants with Improved Protection against SARS-CoV-2 Infection Juan Shi, Jian Zheng, Wanbo Tai, Abhishek K. Verma, Xiujuan Zhang, Qibin Geng, et al. (+9)
646 [GO] mBio 2022―Aug―16 The New SARS-CoV-2 Variants and Their Epidemiological Impact in Mexico Rodrigo García-López, Estibalitz Laresgoiti-Servitje, Roselyn Lemus-Martin, Alejandro Sanchez-Flores, Carlos Sanders-Velez, Jeremy Phillip Kamil, Vinayaka R. Prasad
647 [GO] mSphere 2022―Aug―15 RBD-VLP Vaccines Adjuvanted with Alum or SWE Protect K18-hACE2 Mice against SARS-CoV-2 VOC Challenge Ting Y. Wong, Brynnan P. Russ, Katherine S. Lee, Olivia A. Miller, Jason Kang, Melissa Cooper, et al. (+20)
648 [GO] Microbiology Spectrum 2022―Aug―11 High-Throughput COVID-19 Testing of Naso-Oropharyngeal Swabs Using a Sensitive Extraction-Free Sample Preparation Method Todd M. Pryce, Erin J. Haygarth, Jessica Bordessa, Courtney T. Jeffery, Ian D. Kay, James P. Flexman, et al. (+2)
649 [GO] Microbiology Spectrum 2022―Aug―11 Comparative Assessment of Filtration- and Precipitation-Based Methods for the Concentration of SARS-CoV-2 and Other Viruses from Wastewater Kata Farkas, Cameron Pellett, Natasha Alex-Sanders, Matthew T. P. Bridgman, Alexander Corbishley, Jasmine M. S. Grimsley, et al. (+8)
650 [GO] Microbiology Spectrum 2022―Aug―10 Humoral and Cellular Immune Responses to Vector, Mix-and-Match, or mRNA Vaccines against SARS-CoV-2 and the Relationship between the Two Immune Responses Minjeong Nam, Seung Gyu Yun, Sang-wook Kim, Chris Gunwoo Kim, Jae Hyun Cha, Cheonghwa Lee, et al. (+9)
651 [GO] mSphere 2022―Aug―10 Effectiveness of HEPA Filters at Removing Infectious SARS-CoV-2 from the Air Hiroshi Ueki, Michiko Ujie, Yosuke Komori, Tatsuo Kato, Masaki Imai, Yoshihiro Kawaoka, Nicole M. Bouvier
652 [GO] Journal of Virology 2022―Aug―09 Targeting Doublecortin-Like Kinase 1 (DCLK1)-Regulated SARS-CoV-2 Pathogenesis in COVID-19 Ram Babu Undi, Jason L. Larabee, Adrian Filiberti, Susanna Ulahannan, Sheeja Aravindan, Edana Stroberg, et al. (+9)
653 [GO] Microbiology Spectrum 2022―Aug―09 Differential Impact of SARS-CoV-2 Isolates, Namely, the Wuhan Strain, Delta, and Omicron Variants on Erythropoiesis Suguru Saito, Shima Shahbaz, Wendy Sligl, Mohammed Osman, D. Lorne Tyrrell, Shokrollah Elahi, Saumitra Das
654 [GO] Microbiology Spectrum 2022―Aug―09 Impact of SARS-CoV-2 Omicron on Rapid Antigen Testing Developed for Early-Pandemic SARS-CoV-2 Variants Karoline Leuzinger, Tim Roloff, Adrian Egli, Hans H. Hirsch, Oliver Laeyendecker
655 [GO] Microbiology Spectrum 2022―Aug―08 Analytical Sensitivity of Eight Different SARS-CoV-2 Antigen-Detecting Rapid Tests for Omicron-BA.1 Variant Meriem Bekliz, Kenneth Adea, Olha Puhach, Francisco Perez-Rodriguez, Stéfane Marques Melancia, Stephanie Baggio, et al. (+8)
656 [GO] mBio 2022―Aug―08 Human Nasal Organoids Model SARS-CoV-2 Upper Respiratory Infection and Recapitulate the Differential Infectivity of Emerging Variants Man Chun Chiu, Cun Li, Xiaojuan Liu, Wenjun Song, Zhixin Wan, Yifei Yu, et al. (+8)
657 [GO] Journal of Virology 2022―Aug―04 Proteolytic Processing of the Coronavirus Replicase Nonstructural Protein 14 Exonuclease Is Not Required for Virus Replication but Alters RNA Synthesis and Viral Fitness Jordan Anderson-Daniels, Jennifer Gribble, Mark Denison, Tom Gallagher
658 [GO] Journal of Virology 2022―Aug―04 The SARS-CoV nsp12 Polymerase Active Site Is Tuned for Large-Genome Replication Grace Campagnola, Vishnu Govindarajan, Annelise Pelletier, Bruno Canard, Olve B. Peersen, Anice C. Lowen
659 [GO] Journal of Virology 2022―Aug―04 Structural Study of SARS-CoV-2 Antibodies Identifies a Broad-Spectrum Antibody That Neutralizes the Omicron Variant by Disassembling the Spike Trimer Wuqiang Zhan, Xiaolong Tian, Xiang Zhang, Shenghui Xing, Wenping Song, Qianying Liu, et al. (+8)
660 [GO] mBio 2022―Aug―04 Neutralization Titers in Vaccinated Patients with SARS-CoV-2 Delta Breakthrough Infections Jing Zou, Xuping Xie, Mingru Liu, Pei-Yong Shi, Ping Ren, Sara Cherry
661 [GO] Journal of Virology 2022―Aug―04 A SCID Mouse Model To Evaluate the Efficacy of Antivirals against SARS-CoV-2 Infection Rana Abdelnabi, Caroline S. Foo, Suzanne J. F. Kaptein, Robbert Boudewijns, Laura Vangeel, Steven De Jonghe, et al. (+4)
662 [GO] Journal of Virology 2022―Aug―04 Pandemic 1918 Influenza Virus Does Not Cause Lethal Infection in Rhesus or Cynomolgus Macaques Mable Chan, Meenakshi Tiwary, Helen L. Wu, Nikesh Tailor, Robert Vendramelli, Jonathan Audet, et al. (+15)
663 [GO] Journal of Virology 2022―Aug―02 A Bispecific Antibody Targeting RBD and S2 Potently Neutralizes SARS-CoV-2 Omicron and Other Variants of Concern Mengqi Yuan, Xiangyu Chen, Yanzhi Zhu, Xiaoqing Dong, Yan Liu, Zhaohui Qian, et al. (+3)
664 [GO] mSphere 2022―Aug―01 Repressed Ang 1-7 in COVID-19 Is Inversely Associated with Inflammation and Coagulation Rebecca M. Carpenter, Mary K. Young, William A. O. Petri, Genevieve R. Lyons, Carol Gilchrist, Robert M. Carey, et al. (+2)
665 [GO] mBio 2022―Aug―01 Impact of SARS-CoV-2 Spike Mutations on Its Activation by TMPRSS2 and the Alternative TMPRSS13 Protease Annelies Stevaert, Ria Van Berwaer, Cato Mestdagh, Julie Vandeput, Els Vanstreels, Valerie Raeymaekers, et al. (+3)
666 [GO] mBio 2022―Jul―28 A Bacteriophage-Based, Highly Efficacious, Needle- and Adjuvant-Free, Mucosal COVID-19 Vaccine Jingen Zhu, Swati Jain, Jian Sha, Himanshu Batra, Neeti Ananthaswamy, Paul B. Kilgore, et al. (+13)
667 [GO] Applied and Environmental Microbiology 2022―Jul―27 Erratum for Bailey et al., “Persistence of Coronavirus Surrogates on Meat and Fish Products during Long-Term Storage” Emily S. Bailey, Marina Curcic, Mark D. Sobsey
668 [GO] Journal of Virology 2022―Jul―25 Acquisition of Furin Cleavage Site and Further SARS-CoV-2 Evolution Change the Mechanisms of Viral Entry, Infection Spread, and Cell Signaling Elena I. Frolova, Oksana Palchevska, Tetyana Lukash, Francisco Dominguez, William Britt, Ilya Frolov, Tom Gallagher
669 [GO] Microbiology Spectrum 2022―Jul―21 Discrimination of SARS-CoV-2 Omicron Sublineages BA.1 and BA.2 Using a High-Resolution Melting-Based Assay: a Pilot Study Akira Aoki, Hirokazu Adachi, Yoko Mori, Miyabi Ito, Katsuhiko Sato, Kenji Okuda, et al. (+4)
670 [GO] Microbiology Spectrum 2022―Jul―20 SARS-CoV-2 Convalescent Sera Binding and Neutralizing Antibody Concentrations Compared with COVID-19 Vaccine Efficacy Estimates against Symptomatic Infection Amy J. Schuh, Panayampalli S. Satheshkumar, Stephanie Dietz, Lara Bull-Otterson, Myrna Charles, Chris Edens, et al. (+21)
671 [GO] Journal of Virology 2022―Jul―20 Sequence Exchange Involving Dozens of Consecutive Bases with External Origin in SARS-Related Coronaviruses Tetsuya Akaishi, Akira Horii, Tadashi Ishii, Tom Gallagher
672 [GO] mBio 2022―Jul―20 Ubiquitination of SARS-CoV-2 NSP6 and ORF7a Facilitates NF-κB Activation Hironori Nishitsuji, Satoko Iwahori, Mariko Ohmori, Kunitada Shimotohno, Takayuki Murata, Adriana Forero, Kellie Jurado
673 [GO] Microbiology Spectrum 2022―Jul―19 Increased Presence of Antibodies against Type I Interferons and Human Endogenous Retrovirus W in Intensive Care Unit COVID-19 Patients Elena Rita Simula, Maria Antonietta Manca, Marta Noli, Somaye Jasemi, Stefano Ruberto, Sergio Uzzau, et al. (+4)
674 [GO] Microbiology Spectrum 2022―Jul―19 Cell-Based Platform for Antigen Testing and Its Application for SARS-CoV-2 Infection Marvin A. Ssemadaali, Sherri Newmyer, Harikrishnan Radhakrishnan, Juan Arredondo, Harold S. Javitz, Satya Dandekar, et al. (+2)
675 [GO] Microbiology Resource Announcements 2022―Jul―19 Near-Full-Length Genome Sequences Representing an Event of Zooanthroponotic Transmission of SARS-CoV-2 Lineage B.1.189 in Mexico during 2020 Roberto Navarro-Lopez, Mario Solis-Hernandez, Marisol K. Rocha-Martinez, Samantha Eberl, Ninnet Gomez-Romero, Lauro Velazquez-Salinas, et al. (+2)
676 [GO] Microbiology Spectrum 2022―Jul―19 Contrasting Distribution of SARS-CoV-2 Lineages across Multiple Rounds of Pandemic Waves in West Bengal, the Gateway of East and North-East States of India Animesh K. Singh, Rezwanuzzaman Laskar, Anindita Banerjee, Rajiv Kumar Mondal, Bishal Gupta, Sonia Deb, et al. (+27)
677 [GO] Microbiology Spectrum 2022―Jul―18 Diagnostic Performance Assessment of Saliva RT-PCR and Nasopharyngeal Antigen for the Detection of SARS-CoV-2 in Peru Roger I. Calderón, Tulip A. Jhaveri, Marco A. Tovar, J. Santiago Palomino, Nadia N. Barreda, Oswaldo M. Sanabria, et al. (+9)
678 [GO] mBio 2022―Jul―13 A Retinol Derivative Inhibits SARS-CoV-2 Infection by Interrupting Spike-Mediated Cellular Entry Liangqin Tong, Lin Wang, Shumin Liao, Xiaoping Xiao, Jing Qu, Chunli Wu, et al. (+9)
679 [GO] Microbiology Spectrum 2022―Jul―13 Goblet Cell Hyperplasia Increases SARS-CoV-2 Infection in Chronic Obstructive Pulmonary Disease Jaspreet Osan, Sattya N. Talukdar, Friederike Feldmann, Beth Ann DeMontigny, Kailey Jerome, Kristina L. Bailey, et al. (+3)
680 [GO] mBio 2022―Jul―13 Genetic Surveillance of SARS-CoV-2 M pro Reveals High Sequence and Structural Conservation Prior to the Introduction of Protease Inhibitor Paxlovid Jonathan T. Lee, Qingyi Yang, Alexey Gribenko, B. Scott Perrin, Yuao Zhu, Rhonda Cardin, et al. (+4)
681 [GO] Journal of Virology 2022―Jul―13 Shared N417-Dependent Epitope on the SARS-CoV-2 Omicron, Beta, and Delta Plus Variants Thandeka Moyo-Gwete, Mashudu Madzivhandila, Nonhlanhla N. Mkhize, Prudence Kgagudi, Frances Ayres, Bronwen E. Lambson, et al. (+13)
682 [GO] Microbiology Spectrum 2022―Jul―13 Avoiding False-Positive SARS-CoV-2 Rapid Antigen Test Results with Point-of-Care Molecular Testing on Residual Test Buffer Jason J. LeBlanc, Gregory R. McCracken, Barbara Goodall, Todd F. Hatchette, Lisa Barrett, John Ross, et al. (+3)
683 [GO] Antimicrobial Agents and Chemotherapy 2022―Jul―12 New Perspectives on Antimicrobial Agents: Molnupiravir and Nirmatrelvir/Ritonavir for Treatment of COVID-19 Robert L. Atmar, Natalie Finch
684 [GO] Microbiology Spectrum 2022―Jul―12 Performance of 22 Rapid Lateral Flow Tests for SARS-CoV-2 Antigen Detection and Influence of “Variants of Concern”: Implications for Clinical Use Aurélie Gourgeon, Alexandre Soulier, Étienne Audureau, Souraya Khouider, Arnaud Galbin, Camille Langlois, et al. (+6)
685 [GO] Journal of Virology 2022―Jul―12 A Virion-Based Combination Vaccine Protects against Influenza and SARS-CoV-2 Disease in Mice Ryan R. Chaparian, Alfred T. Harding, Cait E. Hamele, Kristina Riebe, Amelia Karlsson, Gregory D. Sempowski, et al. (+3)
686 [GO] Journal of Virology 2022―Jul―12 Persistent Maintenance of Intermediate Memory B Cells Following SARS-CoV-2 Infection and Vaccination Recall Response Jernej Pušnik, Julia König, Karola Mai, Enrico Richter, Jasmin Zorn, Hannah Proksch, et al. (+4)
687 [GO] mSphere 2022―Jul―12 Angiotensin-Converting Enzyme 2 Potentiates SARS-CoV-2 Infection by Antagonizing Type I Interferon Induction and Its Down-Stream Signaling Pathway Jian Chen, Jian Liu, Zhilu Chen, Haoran Peng, Cuisong Zhu, Daobin Feng, et al. (+5)
688 [GO] Journal of Virology 2022―Jul―12 The Host Response to Influenza A Virus Interferes with SARS-CoV-2 Replication during Coinfection Kohei Oishi, Shu Horiuchi, Judith M. Minkoff, Benjamin R. tenOever, Mark T. Heise
689 [GO] Microbiology Resource Announcements 2022―Jul―11 Co-circulation of Multiple SARS-CoV-2 Variants of Concern in Dhaka, Bangladesh, during the Second Wave of the COVID-19 Pandemic M. Abdullah Omar Nasif, Nahida Sultana, Raad Rahmat, Tahmina Akther, Afzalun Nessa, Munira Jahan, Simon Roux
690 [GO] Microbiology Spectrum 2022―Jul―11 Human ACE2 Genetic Polymorphism Affecting SARS-CoV and SARS-CoV-2 Entry into Cells Takanari Hattori, Takeshi Saito, Kosuke Okuya, Yuji Takahashi, Hiroko Miyamoto, Masahiro Kajihara, et al. (+3)
691 [GO] Applied and Environmental Microbiology 2022―Jul―11 Comparison of Surface Persistence of SARS-CoV-2 Alpha and Delta Variants on Stainless Steel at 4°C and 24°C Okechukwu Onianwa, Isobel Garratt, Jennifer Carter, Antony Spencer, Neville Q. Verlander, Thomas Pottage, et al. (+2)
692 [GO] Journal of Virology 2022―Jul―11 Evaluation of the Deletion of MGF110-5L-6L on Swine Virulence from the Pandemic Strain of African Swine Fever Virus and Use as a DIVA Marker in Vaccine Candidate ASFV-G-ΔI177L Elizabeth Ramirez-Medina, Elizabeth Vuono, Ediane Silva, Ayushi Rai, Alyssa Valladares, Sarah Pruitt, et al. (+5)
693 [GO] Microbiology and Molecular Biology Reviews 2022―Jul―07 Lessons Learned and Yet-to-Be Learned on the Importance of RNA Structure in SARS-CoV-2 Replication Maclean Bassett, Marco Salemi, Brittany Rife Magalis
694 [GO] Microbiology Spectrum 2022―Jul―06 Symptomatic and Asymptomatic Transmission of SARS-CoV-2 in K-12 Schools, British Columbia, Canada April to June 2021 Alexandra Choi, Louise C. Mâsse, Samantha Bardwell, Iryna Kayda, Yanjie Zhao, Yang Xin Zi Xu, et al. (+10)
695 [GO] Microbiology Spectrum 2022―Jul―06 RG203KR Mutations in SARS-CoV-2 Nucleocapsid: Assessing the Impact Using a Virus-Like Particle Model System Harsha Raheja, Soma Das, Anindita Banerjee, Dikshaya P., Deepika C., Debanjan Mukhopadhyay, et al. (+3)
696 [GO] Journal of Virology 2022―Jul―06 Deletion of the H108R Gene Reduces Virulence of the Pandemic Eurasia Strain of African Swine Fever Virus with Surviving Animals Being Protected against Virulent Challenge Elizabeth Vuono, Elizabeth Ramirez-Medina, Ediane Silva, Ayushi Rai, Sarah Pruitt, Nallely Espinoza, et al. (+5)
697 [GO] Microbiology Spectrum 2022―Jul―05 Limited Correlation between SARS-CoV-2 Serologic Assays for Identification of High-Titer COVID-19 Convalescent Plasma Using FDA Thresholds Nicholas E. Larkey, Radwa Ewaisha, Michael A. Lasho, Matthew M. Roforth, Dane Granger, Calvin R. Jerde, et al. (+9)
698 [GO] Microbiology Spectrum 2022―Jul―05 Concerns Regarding Validity of the Use of Bean Extract-Based Gargle for COVID-19 Diagnosis Ki Ho Hong, Heungsup Sung, Daniel R. Perez
699 [GO] Microbiology Spectrum 2022―Jul―05 Author’s Reply to “Concerns regarding Validity of the Use of Bean Extract-Based Gargle for COVID-19 Diagnosis” Joseph Kwon, Euna Ko, Se-Young Cho, Young-Ho Lee, Sangmi Jun, Kyuhong Lee, et al. (+22)
700 [GO] Microbiology Spectrum 2022―Jul―05 Rapid Detection of the Omicron (B.1.1.529) SARS-CoV-2 Variant Using a COVID-19 Diagnostic PCR Assay Chiara Ippoliti, Flavio De Maio, Giulia Santarelli, Simona Marchetti, Antonietta Vella, Rosaria Santangelo, et al. (+3)
701 [GO] Journal of Virology 2022―Jul―05 Engineering and Characterization of Avian Coronavirus Mutants Expressing Fluorescent Reporter Proteins from the Replicase Gene Na Xing, Zhisheng Wang, Jichun Wang, Mariana Nascimento, Anan Jongkaewwattana, Jakob Trimpert, et al. (+3)
702 [GO] mSphere 2022―Jul―05 Impact of Prior Infection on SARS-CoV-2 Antibody Responses in Vaccinated Long-Term Care Facility Staff Emily N. Gallichotte, Mary Nehring, Sophia Stromberg, Michael C. Young, Ashley Snell, Josh Daniels, et al. (+5)
703 [GO] Antimicrobial Agents and Chemotherapy 2022―Jul―05 Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces Delphine Lapaillerie, Cathy Charlier, Véronique Guyonnet-Dupérat, Emilie Murigneux, Henrique S. Fernandes, Fábio G. Martins, et al. (+19)
704 [GO] Journal of Virology 2022―Jul―05 Species-Specific Molecular Barriers to SARS-CoV-2 Replication in Bat Cells Sophie-Marie Aicher, Felix Streicher, Maxime Chazal, Delphine Planas, Dongsheng Luo, Julian Buchrieser, et al. (+13)
705 [GO] Microbiology Spectrum 2022―Jul―05 Decreased Efficiency of Neutralizing Antibodies from Previously Infected or Vaccinated Individuals against the B.1.617.2 (Delta) SARS-CoV-2 Variant Chloé Dimeglio, Fabrice Herin, Isabelle Da-Silva, Caroline Gernigon, Marion Porcheron, Sabine Chapuy-Regaud, et al. (+2)
706 [GO] Microbiology Spectrum 2022―Jun―30 Cross-Species Transmission of Bat Coronaviruses in the Americas: Contrasting Patterns between Alphacoronavirus and Betacoronavirus Diego A. Caraballo, Biao He
707 [GO] Microbiology Spectrum 2022―Jun―30 SARS-CoV-2 Seroconversion in Response to Infection and Vaccination: a Time Series Local Study in Brazil Luciano F. Huergo, Nigella M. Paula, Ana C. A. Gonçalves, Carlos H. S. Kluge, Paulo H. S. A. Marins, Haxley S. C. Camargo, et al. (+12)
708 [GO] Microbiology Spectrum 2022―Jun―29 Molecular Evolution of Porcine Reproductive and Respiratory Syndrome Virus Field Strains from Two Swine Production Systems in the Midwestern United States from 2001 to 2020 Ruwini Rupasinghe, Kyuyoung Lee, Xin Liu, Phillip C. Gauger, Jianqiang Zhang, Beatriz Martínez-López, Yun Young Go
709 [GO] Journal of Clinical Microbiology 2022―Jun―29 COVID-19 Variant Detection with a High-Fidelity CRISPR-Cas12 Enzyme Clare L. Fasching, Venice Servellita, Bridget McKay, Vaishnavi Nagesh, James P. Broughton, Alicia Sotomayor-Gonzalez, et al. (+13)
710 [GO] Journal of Virology 2022―Jun―29 An S1-Nanoparticle Vaccine Protects against SARS-CoV-2 Challenge in K18-hACE2 Mice Linda van Oosten, Kexin Yan, Daniel J. Rawle, Thuy T. Le, Jort J. Altenburg, Cyrielle Fougeroux, et al. (+7)
711 [GO] Microbiology Spectrum 2022―Jun―29 Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda Bailey Lubinski, Laura E. Frazier, My V. T. Phan, Daniel L. Bugembe, Jessie L. Cunningham, Tiffany Tang, et al. (+5)
712 [GO] Journal of Clinical Microbiology 2022―Jun―29 A Method for Variant Agnostic Detection of SARS-CoV-2, Rapid Monitoring of Circulating Variants, and Early Detection of Emergent Variants Such as Omicron Eric Lai, Emily B. Kennedy, Jean Lozach, Kathleen Hayashibara, Jeremy Davis-Turak, David Becker, et al. (+21)
713 [GO] Microbiology Spectrum 2022―Jun―28 Decreased Passive Immunity to Respiratory Viruses through Human Milk during the COVID-19 Pandemic Marloes Grobben, Hannah G. Juncker, Karlijn van der Straten, A. H. Ayesha Lavell, Michiel Schinkel, David T. P. Buis, et al. (+12)
714 [GO] Journal of Virology 2022―Jun―28 Long-Term Expanding Porcine Airway Organoids Provide Insights into the Pathogenesis and Innate Immunity of Porcine Respiratory Coronavirus Infection Chengfan Jiang, Liang Li, Mei Xue, Liyuan Zhao, Xiang Liu, Wenzhe Wang, et al. (+3)
715 [GO] mBio 2022―Jun―28 The Kinetics of SARS-CoV-2 Antibody Development Is Associated with Clearance of RNAemia Chuangqi Wang, Yijia Li, Paulina Kaplonek, Matteo Gentili, Stephanie Fischinger, Kathryn A. Bowman, et al. (+11)
716 [GO] Microbiology Spectrum 2022―Jun―28 Investigating the Sensitivity of Nasal or Throat Swabs: Combination of Both Swabs Increases the Sensitivity of SARS-CoV-2 Rapid Antigen Tests Barbara L. Goodall, Jason J. LeBlanc, Todd F. Hatchette, Lisa Barrett, Glenn Patriquin, Rebekah M. Martin
717 [GO] Microbiology Spectrum 2022―Jun―27 BRET-Based Self-Cleaving Biosensors for SARS-CoV-2 3CLpro Inhibitor Discovery Ningke Hou, Chen Peng, Lijing Zhang, Yuyao Zhu, Qi Hu, Marlene Dreux
718 [GO] Journal of Virology 2022―Jun―27 Using Species a Rotavirus Reverse Genetics to Engineer Chimeric Viruses Expressing SARS-CoV-2 Spike Epitopes Ola Diebold, Victoria Gonzalez, Luca Venditti, Colin Sharp, Rosemary A. Blake, Wenfang S. Tan, et al. (+6)
719 [GO] Microbiology Spectrum 2022―Jun―27 Identification of SARS-CoV-2 Variants of Concern Using Amplicon Next-Generation Sequencing Abdelmajeed Nasereddin, Hadar Golan Berman, Dana G. Wolf, Esther Oiknine-Djian, Sheera Adar, Michael Klutstein
720 [GO] Microbiology Spectrum 2022―Jun―27 Construction of a Porcine Reproductive and Respiratory Syndrome Virus with Nanoluc Luciferase Reporter: a Stable and Highly Efficient Tool for Viral Quantification Both In Vitro and In Vivo Yang Wang, Xinna Ge, Yongning Zhang, Xin Guo, Jun Han, Lei Zhou, et al. (+2)
721 [GO] Journal of Virology 2022―Jun―23 Novel Engineered SARS-CoV-2 HR1 Trimer Exhibits Improved Potency and Broad-Spectrum Activity against SARS-CoV-2 and Its Variants Wenwen Bi, Guilin Chen, Bobo Dang, Tom Gallagher
722 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―23 Characterizing SARS-CoV-2 Viral Clearance Kinetics to Improve the Design of Antiviral Pharmacometric Studies James A. Watson, Stephen M. Kissler, Nicholas P. J. Day, Yonatan H. Grad, Nicholas J. White
723 [GO] mBio 2022―Jun―23 Antibody and Memory B-Cell Immunity in a Heterogeneously SARS-CoV-2-Infected and -Vaccinated Population Eva Bednarski, Perla M. Del Rio Estrada, Justin DaSilva, Celia Boukadida, Fengwen Zhang, Yara A. Luna-Villalobos, et al. (+19)
724 [GO] Journal of Clinical Microbiology 2022―Jun―22 Limitations of Molecular and Antigen Test Performance for SARS-CoV-2 in Symptomatic and Asymptomatic COVID-19 Contacts Matthew L. Robinson, Agha Mirza, Nicholas Gallagher, Alec Boudreau, Lydia Garcia Jacinto, Tong Yu, et al. (+12)
725 [GO] Microbiology Spectrum 2022―Jun―22 Impact of Fast SARS-CoV-2 Molecular Point-Of-Care Testing on Patients’ Length of Stay in an Emergency Department Audrey Baron, Olivier Peyrony, Maud Salmona, Nadia Mahjoub, Sami Ellouze, Maud Anastassiou, et al. (+6)
726 [GO] Microbiology Spectrum 2022―Jun―22 Expression Profile and Localization of SARS-CoV-2 Nonstructural Replicase Proteins in Infected Cells Fang-Shu Shi, Yin Yu, Ya-Li Li, Lilan Cui, Zhuangzhuang Zhao, Mi Wang, et al. (+4)
727 [GO] Microbiology Spectrum 2022―Jun―22 Correction for Valcourt et al., “Evaluating Humoral Immunity against SARS-CoV-2: Validation of a Plaque-Reduction Neutralization Test and a Multilaboratory Comparison of Conventional and Surrogate Neutralization Assays” Emelissa J. Valcourt, Kathy Manguiat, Alyssia Robinson, Yi-Chan Lin, Kento T. Abe, Samira Mubarek, et al. (+25)
728 [GO] mBio 2022―Jun―21 Microbiome Analysis for Wastewater Surveillance during COVID-19 Kyle D. Brumfield, Menu Leddy, Moiz Usmani, Joseph A. Cotruvo, Ching-Tzone Tien, Suzanne Dorsey, et al. (+13)
729 [GO] Journal of Virology 2022―Jun―21 The Cellular Characterization of SARS-CoV-2 Spike Protein in Virus-Infected Cells Using the Receptor Binding Domain Binding Specific Human Monoclonal Antibodies Conrad En-Zuo Chan, Ching-Ging Ng, Angeline Pei-Chew Lim, Shirley Lay-Kheng Seah, De-Hoe Chye, Steven Ka-Khuen Wong, et al. (+9)
730 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―16 In Vitro Selection of Remdesivir-Resistant SARS-CoV-2 Demonstrates High Barrier to Resistance Liva Checkmahomed, Julie Carbonneau, Venice Du Pont, Nicholas C. Riola, Jason K. Perry, Jiani Li, et al. (+5)
731 [GO] mBio 2022―Jun―16 Metalloproteinase-Dependent and TMPRSS2-Independent Cell Surface Entry Pathway of SARS-CoV-2 Requires the Furin Cleavage Site and the S2 Domain of Spike Protein Mizuki Yamamoto, Jin Gohda, Ayako Kobayashi, Keiko Tomita, Youko Hirayama, Naohiko Koshikawa, et al. (+6)
732 [GO] Microbiology Spectrum 2022―Jun―16 Multiplex Target-Redundant RT-LAMP for Robust Detection of SARS-CoV-2 Using Fluorescent Universal Displacement Probes Enos C. Kline, Nuttada Panpradist, Ian T. Hull, Qin Wang, Amy K. Oreskovic, Peter D. Han, et al. (+3)
733 [GO] mSphere 2022―Jun―15 The Serological Sciences Network (SeroNet) for COVID-19: Depth and Breadth of Serology Assays and Plans for Assay Harmonization Amy B. Karger, James D. Brien, Jayne M. Christen, Santosh Dhakal, Troy J. Kemp, Sabra L. Klein, et al. (+54)
734 [GO] Microbiology Spectrum 2022―Jun―15 Anti-Spike Antibody Response to Natural Infection with SARS-CoV-2 and Its Activity against Emerging Variants Cheng-Pin Chen, Kuan-Ying A. Huang, Shin-Ru Shih, Yi-Chun Lin, Chien-Yu Cheng, Yhu-Chering Huang, et al. (+3)
735 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―15 Dual Inhibition of Vacuolar-ATPase and TMPRSS2 Is Required for Complete Blockade of SARS-CoV-2 Entry into Cells Simoun Icho, Edurne Rujas, Krithika Muthuraman, John Tam, Huazhu Liang, Shelby Landreth, et al. (+4)
736 [GO] mSystems 2022―Jun―15 Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings Victor J. Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, et al. (+30)
737 [GO] mSystems 2022―Jun―15 Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings Victor J. Cantú, Pedro Belda-Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, William Jordan, et al. (+32)
738 [GO] Microbiology Spectrum 2022―Jun―14 Evaluation of Diagnostic Strategies for Identifying SARS-CoV-2 Infection in Clinical Practice: a Systematic Review and Compliance with the Standards for Reporting Diagnostic Accuracy Studies Guideline (STARD) Paula Cremades-Martínez, Lucy A. Parker, Elisa Chilet-Rosell, Blanca Lumbreras, Tulip A. Jhaveri
739 [GO] Microbiology Spectrum 2022―Jun―14 Susceptibility of SARS-CoV-2 Omicron Variants to Therapeutic Monoclonal Antibodies: Systematic Review and Meta-analysis Kaiming Tao, Philip L. Tzou, Sergei L. Kosakovsky Pond, John P. A. Ioannidis, Robert W. Shafer, Takamasa Ueno
740 [GO] Journal of Virology 2022―Jun―14 Induction of Broadly Cross-Reactive Antibody Responses to SARS-CoV-2 Variants by S1 Nanoparticle Vaccines Cong Sun, Run-Yu Yuan, Chu Xie, Jiu-Feng Sun, Xin-Yan Fang, Yi-Sha Hu, et al. (+5)
741 [GO] Journal of Virology 2022―Jun―14 Longitudinal Assessment of SARS-CoV-2-Specific T Cell Cytokine-Producing Responses for 1 Year Reveals Persistence of Multicytokine Proliferative Responses, with Greater Immunity Associated with Disease Severity Jonah Lin, Ryan Law, Chapin S. Korosec, Christine Zhou, Wan Hon Koh, Mohammad Sajjad Ghaemi, et al. (+17)
742 [GO] Microbiology Spectrum 2022―Jun―13 Rapid Detection of Bacterial and Fungal Pathogens Using the T2MR versus Blood Culture in Patients with Severe COVID-19 Tamara Seitz, Johannes Holbik, Julian Hind, Georg Gibas, Mario Karolyi, Erich Pawelka, et al. (+4)
743 [GO] mBio 2022―Jun―13 Potency of Fusion-Inhibitory Lipopeptides against SARS-CoV-2 Variants of Concern Katharina S. Schmitz, Daryl Geers, Rory D. de Vries, T. Francesca Bovier, Anna Z. Mykytyn, Corine H. Geurts van Kessel, et al. (+5)
744 [GO] Journal of Virology 2022―Jun―09 SARS-CoV-2 Spike Furin Cleavage Site and S2′ Basic Residues Modulate the Entry Process in a Host Cell-Dependent Manner Muriel Lavie, Jean Dubuisson, Sandrine Belouzard, Tom Gallagher
745 [GO] Microbiology Resource Announcements 2022―Jun―08 Gut Microbiome 16S rRNA Gene Amplicon Taxonomic Profiling of Hospitalized Moroccan COVID-19 Patients Sofia Sehli, Abdellah Idrissi Azami, Nouzha Dini, Nihal Habib, Bouchra Chaouni, Salsabil Hamdi, et al. (+6)
746 [GO] Journal of Virology 2022―Jun―08 A So-Far Overlooked Secondary Conformation State in the Binding Mode of SARS-CoV-2 Spike Protein to Human ACE2 and Its Conversion Rate Are Crucial for Estimating Infectivity Efficacy of the Underlying Virus Variant Marc Sevenich, Joop van den Heuvel, Ian Gering, Jeannine Mohrlüder, Dieter Willbold, Tom Gallagher
747 [GO] Applied and Environmental Microbiology 2022―Jun―07 Persistence of Coronavirus Surrogates on Meat and Fish Products during Long-Term Storage Emily S. Bailey, Marina Curcic, Mark D. Sobsey, Nicole R. Buan
748 [GO] Journal of Microbiology and Biology Education 2022―Jun―06 An Upper-Division, Remote Microbiology Laboratory That Blends Virtual and Hands-on Components to Promote Student Success during the COVID-19 Pandemic Candace Guzman-Cole, Marcos E. García-Ojeda, Jennifer Herzog
749 [GO] Journal of Clinical Microbiology 2022―Jun―06 The Hidden Crisis in the Times of COVID-19: Critical Shortages of Medical Laboratory Professionals in Clinical Microbiology Amy L. Leber, Ellena Peterson, Jennifer Dien Bard, Romney M. Humphries
750 [GO] Microbiology Spectrum 2022―Jun―06 Insertion-and-Deletion Mutations between the Genomes of SARS-CoV, SARS-CoV-2, and Bat Coronavirus RaTG13 Tetsuya Akaishi, Maria Grazia Cusi
751 [GO] Microbiology Spectrum 2022―Jun―06 Detection and Stability of SARS-CoV-2 in Three Self-Collected Specimen Types: Flocked Midturbinate Swab (MTS) in Viral Transport Media, Foam MTS, and Saliva Vic Veguilla, Ashley L. Fowlkes, Adam Bissonnette, Shawn Beitel, Manjusha Gaglani, Christina A. Porucznik, et al. (+22)
752 [GO] Journal of Virology 2022―Jun―06 Erratum for Essalmani et al., “Distinctive Roles of Furin and TMPRSS2 in SARS-CoV-2 Infectivity” Rachid Essalmani, Jaspreet Jain, Delia Susan-Resiga, Ursula Andréo, Alexandra Evagelidis, Rabeb Mouna Derbali, et al. (+12)
753 [GO] Journal of Clinical Microbiology 2022―Jun―06 Considerations regarding Interpretation of Positive SARS-CoV-2 Molecular Results with Late Cycle Threshold Values Stephanie L. Mitchell, Michael J. Loeffelholz, Romney M. Humphries
754 [GO] Clinical Microbiology Reviews 2022―Jun―06 Sensitivity to Vaccines, Therapeutic Antibodies, and Viral Entry Inhibitors and Advances To Counter the SARS-CoV-2 Omicron Variant Hao Zhou, Michelle Møhlenberg, Jigarji C. Thakor, Hardeep Singh Tuli, Pengfei Wang, Yehuda G. Assaraf, et al. (+2)
755 [GO] Microbiology Spectrum 2022―Jun―06 Trivalent NDV-HXP-S Vaccine Protects against Phylogenetically Distant SARS-CoV-2 Variants of Concern in Mice Irene González-Domínguez, Jose Luis Martínez, Stefan Slamanig, Nicholas Lemus, Yonghong Liu, Tsoi Ying Lai, et al. (+12)
756 [GO] Microbiology Spectrum 2022―Jun―02 Evaluation of the Panbio COVID-19 Antigen Rapid Diagnostic Test in Subjects Infected with Omicron Using Different Specimens Rafael Mello Galliez, Larissa Bomfim, Diana Mariani, Isabela de Carvalho Leitão, Anna Carla Pinto Castiñeiras, Cassia Cristina Alves Gonçalves, et al. (+13)
757 [GO] Microbiology Spectrum 2022―Jun―02 A Qualitative Comparison of the Abbott SARS-CoV-2 IgG II Quant Assay against Commonly Used Canadian SARS-CoV-2 Enzyme Immunoassays in Blood Donor Retention Specimens, April 2020 to March 2021 Kento T. Abe, Bhavisha Rathod, Karen Colwill, Anne-Claude Gingras, Ashleigh Tuite, Ninette F. Robbins, et al. (+7)
758 [GO] Journal of Virology 2022―Jun―02 SARS-CoV-2 N Protein Antagonizes Stress Granule Assembly and IFN Production by Interacting with G3BPs to Facilitate Viral Replication Hainan Liu, Yu Bai, Xun Zhang, Ting Gao, Yue Liu, Entao Li, et al. (+17)
759 [GO] Journal of Clinical Microbiology 2022―Jun―01 Bacterial Pneumonia and Respiratory Culture Utilization among Hospitalized Patients with and without COVID-19 in a New York City Hospital Maxwell D. Weidmann, Gregory J. Berry, Jason E. Zucker, Simian Huang, Magdalena E. Sobieszczyk, Daniel A. Green, Melissa B. Miller
760 [GO] Antimicrobial Agents and Chemotherapy 2022―Jun―01 Population Pharmacokinetics of Remdesivir and GS-441524 in Hospitalized COVID-19 Patients E. Leegwater, D. J. A. R. Moes, L. B. E. Bosma, T. H. Ottens, I. M. van der Meer, C. van Nieuwkoop, E. B. Wilms
761 [GO] Microbiology Spectrum 2022―Jun―01 Evaluation of a Multiplex Bead Assay against Single-Target Assays for Detection of IgG Antibodies to SARS-CoV-2 Kaitlin F. Mitchell, Christina M. Carlson, Douglas Nace, Brian S. Wakeman, Jan Drobeniuc, Glenn P. Niemeyer, et al. (+7)
762 [GO] Journal of Clinical Microbiology 2022―Jun―01 Development of a Rapid Live SARS-CoV-2 Neutralization Assay Based on a qPCR Readout Sabine Lichtenegger, Sabine Saiger, Melina Hardt, Susanne Kulnik, Gabriel E. Wagner, Barbara Kleinhappl, et al. (+8)
763 [GO] Microbiology Resource Announcements 2022―May―31 Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic Munira Jahan, M. Abdullah Omar Nasif, Raad Rahmat, SM Rashed Ul Islam, Saif Ullah Munshi, M. Sharfuddin Ahmed, Simon Roux
764 [GO] mSystems 2022―May―31 Obesity: Policy and Practice Recommendations for High-Risk Populations Influenced by the COVID-19 Pandemic Kathryn N. Robinson, Deborah A. Saber, Suzanne Lynn Ishaq
765 [GO] Microbiology Spectrum 2022―May―31 Utility of Serum 1,3-β- d -Glucan Testing for Diagnosis and Prognostication in COVID-19-Associated Pulmonary Aspergillosis Matthias Egger, Florian Prüller, Robert Krause, Juergen Prattes, Martin Hoenigl, Gustavo H. Goldman
766 [GO] Microbiology Spectrum 2022―May―31 A Look inside the Replication Dynamics of SARS-CoV-2 in Blyth’s Horseshoe Bat ( Rhinolophus lepidus ) Kidney Cells Heidi Auerswald, Dolyce H. W. Low, Jurre Y. Siegers, Teyputita Ou, Sonita Kol, Saraden In, et al. (+7)
767 [GO] Microbiology Spectrum 2022―May―31 Impact of the SARS-CoV-2 Pandemic on the Prevalence and Incidence of Gastrointestinal Viruses in Children up to Five Years Old: a Retrospective Cohort Study Alfredo Maldonado-Barrueco, Julio García-Rodríguez, Jorge Yániz-Ramirez, Irene Serrano-Vaquero, Juan Carlos Parra-Alonso, Carlos Vega-Nieto, et al. (+2)
768 [GO] Microbiology Spectrum 2022―May―31 Receptor-Binding-Motif-Targeted Sanger Sequencing: a Quick and Cost-Effective Strategy for Molecular Surveillance of SARS-CoV-2 Variants Sankar Prasad Chaki, Melissa M. Kahl-McDonagh, Benjamin W. Neuman, Kurt A. Zuelke, Prabagaran Narayanasamy
769 [GO] Microbiology Resource Announcements 2022―May―31 Metagenomics of Wastewater Influent from Wastewater Treatment Facilities across Ontario in the Era of Emerging SARS-CoV-2 Variants of Concern Opeyemi U. Lawal, Linkang Zhang, Valeria R. Parreira, R. Stephen Brown, Charles Chettleburgh, Nora Dannah, et al. (+16)
770 [GO] Microbiology Spectrum 2022―May―31 Effects of Spike Mutations in SARS-CoV-2 Variants of Concern on Human or Animal ACE2-Mediated Virus Entry and Neutralization Yunjeong Kim, Natasha N. Gaudreault, David A. Meekins, Krishani D. Perera, Dashzeveg Bold, Jessie D. Trujillo, et al. (+5)
771 [GO] mBio 2022―May―31 The Deubiquitinase USP29 Promotes SARS-CoV-2 Virulence by Preventing Proteasome Degradation of ORF9b Wenying Gao, Liuli Wang, Xiaohui Ju, Simin Zhao, Zhaolong Li, Manman Su, et al. (+6)
772 [GO] Microbiology Spectrum 2022―May―26 Evaluation of Four Point of Care (POC) Antigen Assays for the Detection of the SARS-CoV-2 Variant Omicron Justin Hardick, Nicholas Gallagher, Jaiprasath Sachithanandham, Amary Fall, Zishan Siddiqui, Andrew Pekosz, et al. (+3)
773 [GO] Microbiology Spectrum 2022―May―25 Development and Implementation of Dried Blood Spot-Based COVID-19 Serological Assays for Epidemiologic Studies Marcus P. Wong, Michelle A. Meas, Cameron Adams, Samantha Hernandez, Valerie Green, Magelda Montoya, et al. (+20)
774 [GO] Microbiology Spectrum 2022―May―23 Detectable Duration of Viable SARS-CoV-2, Total and Subgenomic SARS-CoV-2 RNA in Noncritically Ill COVID-19 Patients: a Prospective Cohort Study Angsana Phuphuakrat, Ekawat Pasomsub, Sirawat Srichatrapimuk, Suppachok Kirdlarp, Ampa Suksatu, Chanya Srisaowakarn, et al. (+11)
775 [GO] mBio 2022―May―23 The Translational Landscape of SARS-CoV-2-infected Cells Reveals Suppression of Innate Immune Genes Maritza Puray-Chavez, Nakyung Lee, Kasyap Tenneti, Yiqing Wang, Hung R. Vuong, Yating Liu, et al. (+10)
776 [GO] mBio 2022―May―19 Circulatory Exosomes from COVID-19 Patients Trigger NLRP3 Inflammasome in Endothelial Cells Subhayan Sur, Robert Steele, T. Scott Isbell, Ranjit Ray, Ratna B. Ray, Andrea L. Cox, Diane E. Griffin
777 [GO] mSphere 2022―May―19 PARIS and SPARTA: Finding the Achilles’ Heel of SARS-CoV-2 Viviana Simon, Vamsi Kota, Ryan F. Bloomquist, Hannah B. Hanley, David Forgacs, Savita Pahwa, et al. (+22)
778 [GO] mSphere 2022―May―19 Ethnoracial Disparities in SARS-CoV-2 Seroprevalence in a Large Cohort of Individuals in Central North Carolina from April to December 2020 Cesar A. Lopez, Clark H. Cunningham, Sierra Pugh, Katerina Brandt, Usaphea P. Vanna, Matthew J. Delacruz, et al. (+23)
779 [GO] Journal of Virology 2022―May―19 Effective Interferon Lambda Treatment Regimen To Control Lethal MERS-CoV Infection in Mice Ronald Dijkman, Abhishek Kumar Verma, Muneeswaran Selvaraj, Roshan Ghimire, Hans Henrik Gad, Rune Hartmann, et al. (+5)
780 [GO] Journal of Virology 2022―May―19 The 2009 Pandemic H1N1 Hemagglutinin Stalk Remained Antigenically Stable after Circulating in Humans for a Decade Shannon R. Christensen, Emily T. Martin, Joshua G. Petrie, Arnold S. Monto, Scott E. Hensley, Kanta Subbarao
781 [GO] mSystems 2022―May―18 Stability of SARS-CoV-2-Encoded Proteins and Their Antibody Levels Correlate with Interleukin 6 in COVID-19 Patients Wangyang Li, Georgios D. Kitsios, William Bain, Chenxiao Wang, Tiao Li, Kristen V. Fanning, et al. (+6)
782 [GO] Microbiology Spectrum 2022―May―18 Tracheal Aspirate and Bronchoalveolar Lavage as Potential Specimen Types for COVID-19 Testing Using the Cepheid Xpert Xpress SARS-CoV-2/Flu/RSV Sang Ho Kim, Fatimah AlMutawa, William Lainhart
783 [GO] mSystems 2022―May―18 Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants Yiyan Yang, Keith Dufault-Thompson, Rafaela Salgado Fontenele, Xiaofang Jiang, Sergio Baranzini
784 [GO] Microbiology Spectrum 2022―May―17 Evaluating the Ability to ID (COVID-19) NOW: a Large Real-World Prospective Evaluation of the Abbott ID NOW COVID-19 Assay K. R. Barker, L. N. Small, D. V. Thai, K. Y. Sohn, L. C. Rosella, Karen C. Carroll
785 [GO] Microbiology Spectrum 2022―May―17 Increased Abundance of Achromobacter xylosoxidans and Bacillus cereus in Upper Airway Transcriptionally Active Microbiome of COVID-19 Mortality Patients Indicates Role of Co-Infections in Disease Severity and Outcome Priti Devi, Ranjeet Maurya, Priyanka Mehta, Uzma Shamim, Aanchal Yadav, Partha Chattopadhyay, et al. (+11)
786 [GO] Microbiology Spectrum 2022―May―17 Super Dominant Pathobiontic Bacteria in the Nasopharyngeal Microbiota Cause Secondary Bacterial Infection in COVID-19 Patients Tian Qin, Yajie Wang, Jianping Deng, BaoHong Xu, Xiong Zhu, Jitao Wang, et al. (+20)
787 [GO] Journal of Microbiology and Biology Education 2022―May―16 A CURE for the COVID-19 Era: A Vaccine-Focused Online Immunology Laboratory Srishti Baid, P. Scott Hefty, Dyan E. Morgan, Veronica A. Segarra
788 [GO] mSystems 2022―May―16 SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp. Victor J. Cantú, Rodolfo A. Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, et al. (+35)
789 [GO] Microbiology Spectrum 2022―May―16 Viral RNA Load and Infectivity of SARS-CoV-2 in Paired Respiratory and Oral Specimens from Symptomatic, Asymptomatic, or Postsymptomatic Individuals Rebecca L. Tallmadge, Melissa Laverack, Brittany Cronk, Roopa Venugopalan, Mathias Martins, XiuLin Zhang, et al. (+4)
790 [GO] Microbiology Spectrum 2022―May―16 Evaluation of the Roche SARS-CoV-2 Rapid Antibody Test in Samples from Vaccinated Individuals Johannes Hayer, Eva Urlaub, Kileen L. Shier
791 [GO] Microbiology Spectrum 2022―May―12 Identifying SARS-CoV-2 Variants of Concern through Saliva-Based RT-qPCR by Targeting Recurrent Mutation Sites Rachel E. Ham, Austin R. Smothers, Rui Che, Keegan J. Sell, Congyue Annie Peng, Delphine Dean, Heba H. Mostafa
792 [GO] Microbiology Spectrum 2022―May―11 Emergence of SARS-CoV-2 Spike Mutations during Prolonged Infection in Immunocompromised Hosts Karrie K. K. Ko, Hatairat Yingtaweesittikul, Thuan Tong Tan, Limin Wijaya, Delphine Yanhong Cao, Sui Sin Goh, et al. (+9)
793 [GO] Journal of Virology 2022―May―11 SARS-CoV-2 Variants of Concern Hijack IFITM2 for Efficient Replication in Human Lung Cells Rayhane Nchioua, Annika Schundner, Dorota Kmiec, Caterina Prelli Bozzo, Fabian Zech, Lennart Koepke, et al. (+7)
794 [GO] mBio 2022―May―09 Serine Protease Inhibitors Restrict Host Susceptibility to SARS-CoV-2 Infections Ebba Rosendal, Ionut Sebastian Mihai, Miriam Becker, Debojyoti Das, Lars Frängsmyr, B. David Persson, et al. (+10)
795 [GO] Antimicrobial Agents and Chemotherapy 2022―May―09 Remdesivir and GS-441524 Retain Antiviral Activity against Delta, Omicron, and Other Emergent SARS-CoV-2 Variants Jared Pitts, Jiani Li, Jason K. Perry, Venice Du Pont, Nicholas Riola, Lauren Rodriguez, et al. (+12)
796 [GO] Microbiology Spectrum 2022―May―05 SARS-CoV-2 Infection of Microglia Elicits Proinflammatory Activation and Apoptotic Cell Death Gi Uk Jeong, Jaemyun Lyu, Kyun-Do Kim, Young Cheul Chung, Gun Young Yoon, Sumin Lee, et al. (+6)
797 [GO] Microbiology Spectrum 2022―May―04 Virucidal Properties of Photocatalytic Coating on Glass against a Model Human Coronavirus Ángel L. Álvarez, Kevin P. Dalton, Inés Nicieza, Fabio A. Abade Dos Santos, Pilar de la Peña, Pedro Domínguez, et al. (+3)
798 [GO] mSphere 2022―May―02 Analysis of SARS-CoV-2 in Nasopharyngeal Samples from Patients with COVID-19 Illustrates Population Variation and Diverse Phenotypes, Placing the Growth Properties of Variants of Concern in Context with Other Lineages Tessa Prince, Xiaofeng Dong, Rebekah Penrice-Randal, Nadine Randle, Catherine Hartley, Hannah Goldswain, et al. (+14)
799 [GO] Microbiology Spectrum 2022―May―02 A CLEIA Antigen Assay in Diagnosis and Follow-Up of SARS-CoV-2-Positive Subjects Salvatore Scarcella, Azzurra Rizzelli, Andrea Fontana, Chiara Zecca, Giancarlo Pasanisi, Katia Musio, et al. (+7)
800 [GO] Microbiology Spectrum 2022―Apr―28 Serological Follow-Up Study Indicates High Seasonal Coronavirus Infection and Reinfection Rates in Early Childhood Pekka Kolehmainen, Jemna Heroum, Pinja Jalkanen, Moona Huttunen, Laura Toivonen, Varpu Marjomäki, et al. (+7)
801 [GO] mBio 2022―Apr―27 Status of Humoral and Cellular Immune Responses within 12 Months following CoronaVac Vaccination against COVID-19 Wei Zhao, Weixin Chen, Juan Li, Meng Chen, Qin Li, Min Lv, et al. (+9)
802 [GO] mBio 2022―Apr―26 Gain-of-Signal Assays for Probing Inhibition of SARS-CoV-2 M pro /3CL pro in Living Cells Seyed Arad Moghadasi, Morgan A. Esler, Yuka Otsuka, Jordan T. Becker, Sofia N. Moraes, Constance B. Anderson, et al. (+12)
803 [GO] Microbiology Spectrum 2022―Apr―26 Screening of the Pandemic Response Box Reveals an Association between Antifungal Effects of MMV1593537 and the Cell Wall of Cryptococcus neoformans , Cryptococcus deuterogattii , and Candida auris Haroldo C. de Oliveira, Rafael F. Castelli, Flavia C. G. Reis, Kirandeep Samby, Joshua D. Nosanchuk, Lysangela R. Alves, et al. (+2)
804 [GO] Microbiology Spectrum 2022―Apr―25 Interepidemic Respiratory Syncytial Virus during the COVID-19 Pandemic ChunHong Huang, Malaya K. Sahoo, Michelle Verghese, Mamdouh Sibai, Daniel Solis, Kenji O. Mfuh, et al. (+5)
805 [GO] mBio 2022―Apr―25 Evidence for an ACE2-Independent Entry Pathway That Can Protect from Neutralization by an Antibody Used for COVID-19 Therapy Markus Hoffmann, Anzhalika Sidarovich, Prerna Arora, Nadine Krüger, Inga Nehlmeier, Amy Kempf, et al. (+9)
806 [GO] mBio 2022―Apr―25 Epidemiology and Genomic Characterization of Two Novel SARS-Related Coronaviruses in Horseshoe Bats from Guangdong, China Linmiao Li, Libiao Zhang, Jiabin Zhou, Xiangyang He, Yepin Yu, Ping Liu, et al. (+4)
807 [GO] mBio 2022―Apr―25 Structure of a Vaccine-Induced, Germline-Encoded Human Antibody Defines a Neutralizing Epitope on the SARS-CoV-2 Spike N-Terminal Domain Clara G. Altomare, Daniel C. Adelsberg, Juan Manuel Carreno, Iden A. Sapse, Fatima Amanat, Ali H. Ellebedy, et al. (+4)
808 [GO] mBio 2022―Apr―25 Porcine Reproductive and Respiratory Syndrome Virus Adapts Antiviral Innate Immunity via Manipulating MALT1 Han Gu, Suya Zheng, Guangwei Han, Haotian Yang, Zhuofan Deng, Zehui Liu, et al. (+2)
809 [GO] Journal of Clinical Microbiology 2022―Apr―25 Evaluation of a Rapid and Accessible Reverse Transcription-Quantitative PCR Approach for SARS-CoV-2 Variant of Concern Identification Priscilla S.-W. Yeung, Hannah Wang, Mamdouh Sibai, Daniel Solis, Fumiko Yamamoto, Naomi Iwai, et al. (+14)
810 [GO] Journal of Clinical Microbiology 2022―Apr―20 Limit of Detection for Rapid Antigen Testing of the SARS-CoV-2 Omicron and Delta Variants of Concern Using Live-Virus Culture Sydney Stanley, Donald J. Hamel, Ian D. Wolf, Stefan Riedel, Sanjucta Dutta, Elisa Contreras, et al. (+6)
811 [GO] Journal of Virology 2022―Apr―14 Single-Cell Landscape of Lungs Reveals Key Role of Neutrophil-Mediated Immunopathology during Lethal SARS-CoV-2 Infection Xiao-Shuang Zheng, Qi Wang, Juan Min, Xu-Rui Shen, Qian Li, Qiu-Chen Zhao, et al. (+14)
812 [GO] mBio 2022―Apr―14 Erratum for Vanderheiden et al., “CCR2 Signaling Restricts SARS-CoV-2 Infection” Abigail Vanderheiden, Jeronay Thomas, Allison L. Soung, Meredith E. Davis-Gardner, Katharine Floyd, Fengzhi Jin, et al. (+12)
813 [GO] Microbiology Resource Announcements 2022―Apr―14 Coding-Complete Sequence of a SARS-CoV-2 Strain from an Omicron (B.1.1.529+BA.1) Variant Detected in Morocco Taha Chouati, Mouhssine Hemlali, Marouane Melloul, Sanaa Alaoui-Amine, Safae Rhoulam, Hamza Ghamaz, et al. (+11)
814 [GO] mBio 2022―Apr―14 The Delta SARS-CoV-2 Variant of Concern Induces Distinct Pathogenic Patterns of Respiratory Disease in K18-hACE2 Transgenic Mice Compared to the Ancestral Strain from Wuhan Xiang Liu, Helen Mostafavi, Wern Hann Ng, Joseph R. Freitas, Nicholas J. C. King, Ali Zaid, et al. (+3)
815 [GO] Microbiology Resource Announcements 2022―Apr―13 Report of SARS-CoV-2 BA.1 Lineage in Morocco Safae El Mazouri, Houda Bendani, Nasma Boumajdi, Mhammed Chaoui Roqai, Tarik Aanniz, Myriam Seffar, et al. (+8)
816 [GO] Microbiology Spectrum 2022―Apr―12 Semi-Mechanistic Pharmacokinetic-Pharmacodynamic Model of Camostat Mesylate-Predicted Efficacy against SARS-CoV-2 in COVID-19 Yuri Kosinsky, Kirill Peskov, Donald R. Stanski, Diana Wetmore, Joseph Vinetz, Abimbola O. Kolawole
817 [GO] Journal of Microbiology and Biology Education 2022―Apr―12 Online and In-Person Learning Preferences during the COVID-19 Pandemic among Students Attending the City University of New York Diane Price Banks, Sasha M. Vergez
818 [GO] Microbiology Spectrum 2022―Apr―12 Differences in Transmission between SARS-CoV-2 Alpha (B.1.1.7) and Delta (B.1.617.2) Variants Camino Trobajo-Sanmartín, Iván Martínez-Baz, Ana Miqueleiz, Miguel Fernández-Huerta, Cristina Burgui, Itziar Casado, et al. (+5)
819 [GO] Microbiology Spectrum 2022―Apr―12 Clinical Evaluation of BD Veritor SARS-CoV-2 and Flu A+B Assay for Point-Of-Care System Katherine Christensen, Huimiao Ren, Shirley Chen, Charles K. Cooper, Stephen Young, Eleanor A. Powell
820 [GO] Microbiology Spectrum 2022―Apr―12 Changing Patterns of SARS-CoV-2 Seroprevalence among Canadian Blood Donors during the Vaccine Era Cassandra N. Reedman, Steven J. Drews, Qi-Long Yi, Chantale Pambrun, Sheila F. O’Brien, Susan Realegeno
821 [GO] Microbiology Spectrum 2022―Apr―12 Wastewater-Based SARS-CoV-2 Surveillance in Northern New England Diana M. Toledo, Ashlee A. Robbins, Torrey L. Gallagher, Kenneth Chase Hershberger, Rachael E. Barney, Sabrina M. Salmela, et al. (+9)
822 [GO] Journal of Virology 2022―Apr―12 Single Immunization with Recombinant ACAM2000 Vaccinia Viruses Expressing the Spike and the Nucleocapsid Proteins Protects Hamsters against SARS-CoV-2-Caused Clinical Disease Yvon Deschambault, Jessie Lynch, Bryce Warner, Kevin Tierney, Denise Huynh, Robert Vendramelli, et al. (+15)
823 [GO] Journal of Microbiology and Biology Education 2022―Apr―11 New Online Accommodations Are Not Enough: The Mismatch between Student Needs and Supports Given for Students with Disabilities during the COVID-19 Pandemic Logan E. Gin, Danielle C. Pais, Kristen D. Parrish, Sara E. Brownell, Katelyn M. Cooper
824 [GO] Journal of Virology 2022―Apr―07 The COVID-19 Humoral Immunological Status Induced by CoronaVac and AstraZeneca Vaccines Significantly Benefits from a Booster Shot with the Pfizer Vaccine Jessica Pires Farias, Patrícia de Souza da Silva, Mayanna Moreira Costa Fogaça, Itana Vivian Rocha Santana, Wilson Barros Luiz, Alexander Birbrair, et al. (+2)
825 [GO] Journal of Microbiology and Biology Education 2022―Apr―07 Microbiology Laboratory Simulations: From a Last-Minute Resource during the Covid-19 Pandemic to a Valuable Learning Tool to Retain-A Semester Microbiology Laboratory Curriculum That Uses Labster as Prelaboratory Activity Manuela Tripepi
826 [GO] Journal of Virology 2022―Apr―07 Structural Basis of the Main Proteases of Coronavirus Bound to Drug Candidate PF-07321332 Jian Li, Cheng Lin, Xuelan Zhou, Fanglin Zhong, Pei Zeng, Yang Yang, et al. (+9)
827 [GO] Journal of Virology 2022―Apr―07 SARS-CoV-2 nsp5 Exhibits Stronger Catalytic Activity and Interferon Antagonism than Its SARS-CoV Ortholog Jiyao Chen, Zhuang Li, Jiahui Guo, Shangen Xu, Junwei Zhou, Qian Chen, et al. (+6)
828 [GO] Microbiology Spectrum 2022―Apr―07 The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico Selene Zárate, Blanca Taboada, José Esteban Muñoz-Medina, Pavel Iša, Alejandro Sanchez-Flores, Celia Boukadida, et al. (+31)
829 [GO] Journal of Clinical Microbiology 2022―Apr―07 Multicenter Evaluation of the BioFire Respiratory Panel 2.1 (RP2.1) for Detection of SARS-CoV-2 in Nasopharyngeal Swab Samples Gregory J. Berry, Wei Zhen, Elizabeth Smith, Ryhana Manji, Suzane Silbert, Amorce Lima, et al. (+6)
830 [GO] Microbiology Spectrum 2022―Apr―07 Simultaneous Measurement of IgM and IgG Antibodies to SARS-CoV-2 Spike, RBD, and Nucleocapsid Multiplexed in a Single Assay on the xMAP INTELLIFLEX DR-SE Flow Analyzer Andrew Cameron, Jessica L. Bohrhunter, Claire A. Porterfield, Rupinder Mangat, Michael H. Karasick, Zachary Pearson, et al. (+3)
831 [GO] Microbiology Spectrum 2022―Apr―06 Longer Intervals before Vaccination Increase Spike Antibody Titers in Individuals Previously Infected with SARS-CoV-2 Xiuqiong Bi, Tomoko Takayama, Masaharu Tokoro, Tetsushi Mizuno, Akinori Hara, Hiroyuki Nakamura, et al. (+5)
832 [GO] Journal of Microbiology and Biology Education 2022―Apr―05 Why Did Students Report Lower Test Anxiety during the COVID-19 Pandemic? Sharday N. Ewell, Chloe C. Josefson, Cissy J. Ballen
833 [GO] Journal of Microbiology and Biology Education 2022―Apr―05 Education Racial and Gender Disparities in COVID-19 Worry, Stress, and Food Insecurities across Undergraduate Biology Students at a Southeastern University Kelly M. Correia, Shannon R. Bierma, Sophia D. Houston, Madison T. Nelson, Khushwant S. Pannu, Chase M. Tirman, et al. (+7)
834 [GO] Applied and Environmental Microbiology 2022―Apr―05 Detection of SARS-CoV-2 Variants Mu, Beta, Gamma, Lambda, Delta, Alpha, and Omicron in Wastewater Settled Solids Using Mutation-Specific Assays Is Associated with Regional Detection of Variants in Clinical Samples Marlene Wolfe, Bridgette Hughes, Dorothea Duong, Vikram Chan-Herur, Krista R. Wigginton, Bradley J. White, et al. (+2)
835 [GO] Journal of Microbiology and Biology Education 2022―Apr―04 We Can’t Fail Again: Arguments for Professional Development in the Wake of COVID-19 Lisa L. Walsh, Robert J. Bills, Stanley M. Lo, Emily M. Walter, Benjamin E. Weintraub, Michelle D. Withers
836 [GO] Microbiology Spectrum 2022―Apr―04 Analysis of Clinical Course and Vaccination Influence on Serological Response in COVID-19 Convalescents Justyna Adamczuk, Piotr Czupryna, Justyna Dunaj-Małyszko, Ewelina Kruszewska, Sławomir Pancewicz, Karol Kamiński, et al. (+4)
837 [GO] Journal of Clinical Microbiology 2022―Apr―04 SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time Fiona Ashford, Angus Best, Steven J. Dunn, Zahra Ahmed, Henna Siddiqui, Jordan Melville, et al. (+14)
838 [GO] Microbiology Spectrum 2022―Mar―31 Rapid Quantitative Point-Of-Care Diagnostic Test for Post COVID-19 Vaccination Antibody Monitoring Maria E. Moeller, Frederik N. Engsig, Melanie Bade, Jeppe Fock, Pearlyn Pah, Anna Louise Soerensen, et al. (+4)
839 [GO] mBio 2022―Mar―31 Are Unique Regional Factors the Missing Link in India’s COVID-19-Associated Mucormycosis Crisis? Jessy Skaria, Teny M. John, Shibu Varkey, Dimitrios P. Kontoyiannis, Tom Chiller
840 [GO] Microbiology Spectrum 2022―Mar―30 Effects of COVID-19 on Blood Culture Contamination at a Tertiary Care Academic Medical Center Brianna Sacchetti, Justin Travis, Lisa L. Steed, Ginny Webb, Eleanor A. Powell
841 [GO] mBio 2022―Mar―30 The Impact of Evolving SARS-CoV-2 Mutations and Variants on COVID-19 Vaccines Gary McLean, Jeremy Kamil, Benhur Lee, Penny Moore, Thomas F. Schulz, Alexander Muik, et al. (+4)
842 [GO] Microbiology Spectrum 2022―Mar―30 Update on SARS-CoV-2 Omicron Variant of Concern and Its Peculiar Mutational Profile Mohammad Alkhatib, Romina Salpini, Luca Carioti, Francesca Alessandra Ambrosio, Stefano D’Anna, Leonardo Duca, et al. (+9)
843 [GO] Journal of Virology 2022―Mar―30 Possible Cross-Reactivity of Feline and White-Tailed Deer Antibodies against the SARS-CoV-2 Receptor Binding Domain Trevor J. Hancock, Peyton Hickman, Niloo Kazerooni, Melissa Kennedy, Stephen A. Kania, Michelle Dennis, et al. (+7)
844 [GO] Microbiology Spectrum 2022―Mar―29 SARS-CoV-2 Point Mutation and Deletion Spectra and Their Association with Different Disease Outcomes Brenda Martínez-González, María Eugenia Soria, Lucía Vázquez-Sirvent, Cristina Ferrer-Orta, Rebeca Lobo-Vega, Pablo Mínguez, et al. (+21)
845 [GO] Microbiology Spectrum 2022―Mar―29 The Usefulness of Antigen Testing in Predicting Contagiousness in COVID-19 Tulio J. Lopera, Juan Carlos Alzate-Ángel, Francisco J. Díaz, María T. Rugeles, Wbeimar Aguilar-Jiménez, Eleanor A. Powell
846 [GO] Microbiology and Molecular Biology Reviews 2022―Mar―28 Molecular Virology of SARS-CoV-2 and Related Coronaviruses Yu-An Kung, Kuo-Ming Lee, Huan-Jung Chiang, Sheng-Yu Huang, Chung-Jung Wu, Shin-Ru Shih
847 [GO] Journal of Virology 2022―Mar―28 Inactivated SARS-CoV-2 Vaccine Shows Cross-Protection against Bat SARS-Related Coronaviruses in Human ACE2 Transgenic Mice Mei-Qin Liu, Ren-Di Jiang, Jing Guo, Ying Chen, Dong-Sheng Yang, Xi Wang, et al. (+8)
848 [GO] Journal of Virology 2022―Mar―28 Structural Basis for Human Receptor Recognition by SARS-CoV Omicron Variant BA.1 Qibin Geng, Ke Shi, Gang Ye, Wei Zhang, Hideki Aihara, Fang Li, Tom Gallagher
849 [GO] Journal of Virology 2022―Mar―28 Distinctive Roles of Furin and TMPRSS2 in SARS-CoV-2 Infectivity Rachid Essalmani, Jaspreet Jain, Delia Susan-Resiga, Ursula Andréo, Alexandra Evagelidis, Rabeb Mouna Derbali, et al. (+13)
850 [GO] mBio 2022―Mar―28 Viral Mimicry of Interleukin-17A by SARS-CoV-2 ORF8 Xin Wu, Tian Xia, Woo-Jin Shin, Kwang-Min Yu, Wooram Jung, Alexandra Herrmann, et al. (+11)
851 [GO] Microbiology Resource Announcements 2022―Mar―28 Genome Sequences of 408 SARS-CoV-2 Strains Obtained from Nasopharyngeal Swabs in La Araucanía Region, Southern Chile Michel Abanto Marin, Benjamín Leyton-Carcaman, Claudio Vázquez, Benjamín Durán-Vinet, Katterin Bobadilla, Claudio Rodriguez-Ruiz, et al. (+9)
852 [GO] Journal of Microbiology and Biology Education 2022―Mar―28 Increasing Student Engagement through Course Attributes, Community, and Classroom Technology: Lessons from the Pandemic Cristine Donham, Cathy Pohan, Erik Menke, Petra Kranzfelder
853 [GO] Journal of Clinical Microbiology 2022―Mar―28 The SARS-CoV-2 Omicron Variant Does Not Have Higher Nasal Viral Loads Compared to the Delta Variant in Symptomatic and Asymptomatic Individuals Andrew M. Laitman, Joshua A. Lieberman, Noah G. Hoffman, Pavitra Roychoudhury, Patrick C. Mathias, Alexander L. Greninger, Yi-Wei Tang
854 [GO] Journal of Clinical Microbiology 2022―Mar―28 Impact of SARS-CoV-2 Variants on the Analytical Sensitivity of rRT-PCR Assays Yuqing Chen, Yanxi Han, Jing Yang, Yu Ma, Jinming Li, Rui Zhang, Yi-Wei Tang
855 [GO] Journal of Clinical Microbiology 2022―Mar―25 Prognostic Impact of Bronchoalveolar Lavage Fluid Galactomannan and Aspergillus Culture Results on Survival in COVID-19 Intensive Care Unit Patients: a Post Hoc Analysis from the European Confederation of Medical Mycology (ECMM) COVID-19-Associated Pulmonary Aspergillosis Study Daniele Roberto Giacobbe, Juergen Prattes, Joost Wauters, Silvia Dettori, Alessio Signori, Jon Salmanton-García, et al. (+16)
856 [GO] Journal of Clinical Microbiology 2022―Mar―25 Performance of COVIDSeq and Swift Normalase Amplicon SARS-CoV-2 Panels for SARS-CoV-2 Genome Sequencing: Practical Guide and Combining FASTQ Strategy Hosoon Choi, Munok Hwang, Dhammika H. Navarathna, Jing Xu, Janell Lukey, Chetan Jinadatha, Angela M. Caliendo
857 [GO] Journal of Clinical Microbiology 2022―Mar―25 Highly Sensitive Lineage Discrimination of SARS-CoV-2 Variants through Allele-Specific Probe PCR Jeremy Ratcliff, Farah Al-Beidh, Sagida Bibi, David Bonsall, Sue Ann Costa Clemens, Lise Estcourt, et al. (+23)
858 [GO] Microbiology Resource Announcements 2022―Mar―24 Genome Sequences of 25 SARS-CoV-2 Sublineage B.1.1.529 Omicron Strains in Bangladesh Omar Hamza Bin Manjur, Mokibul Hassan Afrad, Manjur Hossain Khan, Mohabbat Hossain, Zannat Kawser, Ahmed Nawsher Alam, et al. (+16)
859 [GO] Journal of Microbiology and Biology Education 2022―Mar―23 Student Anxiety and Engagement with Online Instruction across Two Semesters of COVID-19 Disruptions Eric Pennino, Catherine Ishikawa, Sayonita Ghosh Hajra, Navneet Singh, Kelly McDonald
860 [GO] Microbiology Spectrum 2022―Mar―23 High Seroprevalence of SARS-CoV-2 in White-Tailed Deer (Odocoileus virginianus) at One of Three Captive Cervid Facilities in Texas Christopher M. Roundy, Chase M. Nunez, Logan F. Thomas, Lisa D. Auckland, Wendy Tang, Jack J. Richison, et al. (+8)
861 [GO] Journal of Virology 2022―Mar―23 Heparanase Blockade as a Novel Dual-Targeting Therapy for COVID-19 Jingyu Xiang, Mijia Lu, Min Shi, Xiaogang Cheng, Kristin A. Kwakwa, Jennifer L. Davis, et al. (+14)
862 [GO] Microbiology Spectrum 2022―Mar―23 Multiple Routes of Antibody-Dependent Enhancement of SARS-CoV-2 Infection Kosuke Okuya, Takanari Hattori, Takeshi Saito, Yoshihiro Takadate, Michihito Sasaki, Wakako Furuyama, et al. (+6)
863 [GO] Journal of Clinical Microbiology 2022―Mar―23 Implementation of a Streamlined SARS-CoV-2 Whole-Genome Sequencing Assay for Expeditious Surveillance during the Emergence of the Omicron Variant John A. Fissel, Javier Mestas, Pei Ying Chen, Jessica Flores-Vazquez, Thao T. Truong, Moiz Bootwalla, et al. (+4)
864 [GO] Microbiology Spectrum 2022―Mar―22 Longitudinal SARS-CoV-2 Testing among the Unvaccinated Is Punctuated by Intermittent Positivity and Variable Rates of Increasing Cycle Threshold Values Shawn E. Hawken, Subhashini A. Sellers, Jason R. Smedberg, Jeremy D. Ward, Avian M. Elliott, Herbert C. Whinna, et al. (+3)
865 [GO] Journal of Virology 2022―Mar―21 Coronavirus Porcine Deltacoronavirus Upregulates MHC Class I Expression through RIG-I/IRF1-Mediated NLRC5 Induction Xiang Liu, Lingdan Yin, Mei Xue, Jianfei Chen, Liang Li, Fang Fu, et al. (+3)
866 [GO] Microbiology Spectrum 2022―Mar―21 Comparison of Saliva and Midturbinate Swabs for Detection of SARS-CoV-2 Jianyu Lai, Jennifer German, Filbert Hong, S.-H. Sheldon Tai, Kathleen M. McPhaul, Donald K. Milton, Heba H. Mostafa
867 [GO] mSystems 2022―Mar―21 Mapping Data to Deep Understanding: Making the Most of the Deluge of SARS-CoV-2 Genome Sequences Bahrad A. Sokhansanj, Gail L. Rosen, Marta M. Gaglia
868 [GO] Microbiology Spectrum 2022―Mar―21 The Effect of Vaccine Type and SARS-CoV-2 Lineage on Commercial SARS-CoV-2 Serologic and Pseudotype Neutralization Assays in mRNA Vaccine Recipients Nicole V. Tolan, Amy C. Sherman, Guohai Zhou, Katherine G. Nabel, Michaël Desjardins, Stacy Melanson, et al. (+13)
869 [GO] Microbiology Spectrum 2022―Mar―21 SARS-CoV-2 Lineage Tracking, and Evolving Trends Seen during Three Consecutive Peaks of Infection in Delhi, India: a Clinico-Genomic Study Pramod Gautam, Diptanu Paul, Varun Suroliya, Rahul Garg, Reshu Agarwal, Santanu Das, et al. (+8)
870 [GO] Microbiology Spectrum 2022―Mar―21 Profiling of SARS-CoV-2 Subgenomic RNAs in Clinical Specimens Zigui Chen, Rita Way Yin Ng, Grace Lui, Lowell Ling, Chit Chow, Apple Chung Man Yeung, et al. (+7)
871 [GO] mBio 2022―Mar―17 Broad Neutralization of SARS-CoV-2 Variants, Including Omicron, following Breakthrough Infection with Delta in COVID-19-Vaccinated Individuals Thomas Lechmere, Luke B. Snell, Carl Graham, Jeffrey Seow, Zayed A. Shalim, Themoula Charalampous, et al. (+7)
872 [GO] mSphere 2022―Mar―17 A 265-Nanometer High-Power Deep-UV Light-Emitting Diode Rapidly Inactivates SARS-CoV-2 Aerosols Hiroshi Ueki, Mutsumi Ito, Yuri Furusawa, Seiya Yamayoshi, Shin-ichiro Inoue, Yoshihiro Kawaoka, Nicole M. Bouvier
873 [GO] Journal of Clinical Microbiology 2022―Mar―16 Clinical Laboratory Budgets during the COVID-19 Pandemic: a Micro-Comic Strip Alexander J. McAdam, Carey-Ann D. Burnham
874 [GO] Microbiology Spectrum 2022―Mar―16 Diagnostic Performance of Six Rapid Antigen Tests for SARS-CoV-2 Jessica Navero-Castillejos, Climent Casals-Pascual, Sofía Narváez, Genoveva Cuesta, Juan Carlos Hurtado, Mariana Fernandez, et al. (+9)
875 [GO] Journal of Virology 2022―Mar―16 When Poly(A) Binding Proteins Meet Viral Infections, Including SARS-CoV-2 Jie Gao, Yan-Dong Tang, Wei Hu, Chunfu Zheng, Rozanne M. Sandri-Goldin
876 [GO] Journal of Virology 2022―Mar―16 SARS-CoV-2 Evolution: On the Sudden Appearance of the Omicron Variant Ben Berkhout, Elena Herrera-Carrillo, Tom Gallagher
877 [GO] Microbiology Spectrum 2022―Mar―16 Neutralizing Monoclonal Antibodies Inhibit SARS-CoV-2 Infection through Blocking Membrane Fusion Chia-Jung Li, Tai-Ling Chao, Ting-Yu Chang, Chia-Chun Hsiao, De-Chao Lu, Yi-Wei Chiang, et al. (+8)
878 [GO] Journal of Virology 2022―Mar―16 Host Cells Actively Resist Porcine Reproductive and Respiratory Syndrome Virus Infection via the IRF8-MicroRNA-10a-SRP14 Regulatory Pathway Zifang Zheng, Xiali Fu, Xue Ling, Huanhuan Sun, Yang Li, Zhiqian Ma, et al. (+4)
879 [GO] mBio 2022―Mar―15 Epistasis at the SARS-CoV-2 Receptor-Binding Domain Interface and the Propitiously Boring Implications for Vaccine Escape Nash D. Rochman, Guilhem Faure, Yuri I. Wolf, Peter L. Freddolino, Feng Zhang, Eugene V. Koonin, Michael S. Diamond
880 [GO] Applied and Environmental Microbiology 2022―Mar―14 Data on Transfer of Human Coronavirus SARS-CoV-2 from Foods and Packaging Materials to Gloves Indicate That Fomite Transmission Is of Minor Importance S. Butot, S. Zuber, M. Moser, L. Baert, Christopher A. Elkins
881 [GO] mSphere 2022―Mar―14 Correlation of Immunogenicity and Reactogenicity of BNT162b2 and CoronaVac SARS-CoV-2 Vaccines Ruiqi Zhang, Ka-Yi Leung, Danlei Liu, Yujing Fan, Lu Lu, Pui-Chun Chan, et al. (+6)
882 [GO] Applied and Environmental Microbiology 2022―Mar―14 Design of SARS-CoV-2 Variant-Specific PCR Assays Considering Regional and Temporal Characteristics Chamteut Oh, Palash Sashittal, Aijia Zhou, Leyi Wang, Mohammed El-Kebir, Thanh H. Nguyen, Christopher A. Elkins
883 [GO] Microbiology Spectrum 2022―Mar―14 Specific Detection of SARS-CoV-2 Variants B.1.1.7 (Alpha) and B.1.617.2 (Delta) Using a One-Step Quantitative PCR Assay Oran Erster, Ella Mendelson, Areej Kabat, Virginia Levy, Batya Mannasse, Hadar Assraf, et al. (+12)
884 [GO] Microbiology Spectrum 2022―Mar―10 Performance of Immunoglobulin G Serology on Finger Prick Capillary Dried Blood Spot Samples to Detect a SARS-CoV-2 Antibody Response Aidan M. Nikiforuk, Brynn McMillan, Sofia R. Bartlett, Ana Citlali Márquez, Tamara Pidduck, Jesse Kustra, et al. (+11)
885 [GO] mBio 2022―Mar―10 Characterization of SARS-CoV-2 Variants B.1.617.1 (Kappa), B.1.617.2 (Delta), and B.1.618 by Cell Entry and Immune Evasion Wenlin Ren, Xiaohui Ju, Mingli Gong, Jun Lan, Yanying Yu, Quanxin Long, et al. (+11)
886 [GO] Clinical Microbiology Reviews 2022―Mar―09 COVID-19 Convalescent Plasma and Clinical Trials: Understanding Conflicting Outcomes Daniele Focosi, Massimo Franchini, Liise-anne Pirofski, Thierry Burnouf, Nigel Paneth, Michael J. Joyner, Arturo Casadevall
887 [GO] Microbiology Spectrum 2022―Mar―09 Vaccine-Induced Antibody Responses against SARS-CoV-2 Variants-Of-Concern Six Months after the BNT162b2 COVID-19 mRNA Vaccination Pinja Jalkanen, Pekka Kolehmainen, Anu Haveri, Moona Huttunen, Larissa Laine, Pamela Österlund, et al. (+13)
888 [GO] Journal of Virology 2022―Mar―09 Increased Sensitivity of SARS-CoV-2 to Type III Interferon in Human Intestinal Epithelial Cells Camila Metz-Zumaran, Carmon Kee, Patricio Doldan, Cuncai Guo, Megan L. Stanifer, Steeve Boulant, Kanta Subbarao
889 [GO] mBio 2022―Mar―08 Structural Dynamics and Molecular Evolution of the SARS-CoV-2 Spike Protein Kyle A. Wolf, Jason C. Kwan, Jeremy P. Kamil, Vinayaka R. Prasad
890 [GO] Clinical Microbiology Reviews 2022―Mar―08 Digital PCR Applications in the SARS-CoV-2/COVID-19 Era: a Roadmap for Future Outbreaks Raphael Nyaruaba, Caroline Mwaliko, David Dobnik, Pavel Neužil, Patrick Amoth, Matilu Mwau, et al. (+3)
891 [GO] mBio 2022―Mar―07 Nutritional Modulation of Gut Microbiota Alleviates Severe Gastrointestinal Symptoms in a Patient with Post-Acute COVID-19 Syndrome Ying Wang, Guojun Wu, Liping Zhao, Weizheng Wang, Vaughn S. Cooper
892 [GO] Infection and Immunity 2022―Mar―07 Bacillus -Based Direct-Fed Microbial Reduces the Pathogenic Synergy of a Coinfection with Salmonella enterica Serovar Choleraesuis and Porcine Reproductive and Respiratory Syndrome Virus Federico A. Zuckermann, Robert Husmann, WeiYu Chen, Patrick Roady, Janice Pfeiff, Kyle R. Leistikow, et al. (+5)
893 [GO] Microbiology Spectrum 2022―Mar―07 Correlation Analysis between Gut Microbiota Alterations and the Cytokine Response in Patients with Coronavirus Disease during Hospitalization Taketoshi Mizutani, Aya Ishizaka, Michiko Koga, Kazuhiko Ikeuchi, Makoto Saito, Eisuke Adachi, et al. (+10)
894 [GO] Journal of Clinical Microbiology 2022―Mar―07 Using Spike Gene Target Failure to Estimate Growth Rate of the Alpha and Omicron Variants of SARS-CoV-2 Benjamin F. Smith, Peter F. Graven, Doris Y. Yang, Siouxzanna M. Downs, Donna E. Hansel, Guang Fan, et al. (+2)
895 [GO] Microbiology Spectrum 2022―Mar―07 Conserved Pattern and Potential Role of Recurrent Deletions in SARS-CoV-2 Evolution Shenghui Weng, Hangyu Zhou, Chengyang Ji, Liang Li, Na Han, Rong Yang, et al. (+3)
896 [GO] Microbiology Spectrum 2022―Mar―07 Diagnostic Value of a SARS-CoV-2 Rapid Test Kit for Detection of Neutralizing Antibodies as a Point-of-Care Surveillance Test Michele Mun Hei Chan, Ka-Yi Leung, Ricky Rui Qi Zhang, Danlei Liu, Yujing Fan, Matthew Ka Wa Khong, et al. (+6)
897 [GO] Journal of Clinical Microbiology 2022―Mar―07 Immunity to SARS-CoV-2: What Do We Know and Should We Be Testing for It? Anisha Misra, Elitza S. Theel, Romney M. Humphries
898 [GO] mBio 2022―Mar―01 Minimal Crossover between Mutations Associated with Omicron Variant of SARS-CoV-2 and CD8 + T-Cell Epitopes Identified in COVID-19 Convalescent Individuals Andrew D. Redd, Alessandra Nardin, Hassen Kared, Evan M. Bloch, Brian Abel, Andrew Pekosz, et al. (+5)
899 [GO] mBio 2022―Mar―01 The FDA-Approved Drug Cobicistat Synergizes with Remdesivir To Inhibit SARS-CoV-2 Replication In Vitro and Decreases Viral Titers and Disease Progression in Syrian Hamsters Iart Luca Shytaj, Mohamed Fares, Lara Gallucci, Bojana Lucic, Mahmoud M. Tolba, Liv Zimmermann, et al. (+25)
900 [GO] mBio 2022―Mar―01 Contribution of Host miRNA-223-3p to SARS-CoV-Induced Lung Inflammatory Pathology Lucía Morales, Juan Carlos Oliveros, Luis Enjuanes, Isabel Sola, Xiang-Jin Meng
901 [GO] Journal of Virology 2022―Feb―28 Omicron: what makes the latest SARS-CoV-2 variant of concern so concerning? Christoph Jung, Dorota Kmiec, Lennart Koepke, Fabian Zech, Timo Jacob, Konstantin M. J. Sparrer, Frank Kirchhoff
902 [GO] mSphere 2022―Feb―28 Adenovirus 5 Vectors Expressing SARS-CoV-2 Proteins Scott Bachus, Nikolas Akkerman, Lauren Fulham, Drayson Graves, Caelan Stephanson, Harram Memon, et al. (+3)
903 [GO] Microbiology Spectrum 2022―Feb―23 Dynamic Changes of the Blood Chemistry in Syrian Hamsters Post-Acute COVID-19 Chi-Ju Hsu, Wen-Chin Lin, Yu-Ching Chou, Chuen-Mi Yang, Hsueh-Ling Wu, Yun-Hsiang Cheng, et al. (+5)
904 [GO] Microbiology Spectrum 2022―Feb―23 Evaluation of the Levels of Peripheral CD3 + , CD4 + , and CD8 + T Cells and IgG and IgM Antibodies in COVID-19 Patients at Different Stages of Infection Waleed Aljabr, Ahod Al-Amari, Basma Abbas, Alaa Karkashan, Saad Alamri, Mohammed Alnamnakani, et al. (+2)
905 [GO] Microbiology Spectrum 2022―Feb―23 Implementation and Extended Evaluation of the Euroimmun Anti-SARS-CoV-2 IgG Assay and Its Contribution to the United Kingdom’s COVID-19 Public Health Response Ashley David Otter, Abbie Bown, Silvia D’Arcangelo, Daniel Bailey, Amanda Semper, Jacqueline Hewson, et al. (+21)
906 [GO] Microbiology Spectrum 2022―Feb―23 Convalescent Plasma for Preventing Critical Illness in COVID-19: a Phase 2 Trial and Immune Profile Jeffrey M. Sturek, Tania A. Thomas, James D. Gorham, Chelsea A. Sheppard, Allison H. Raymond, Kristen Petros De Guex, et al. (+14)
907 [GO] Microbiology Spectrum 2022―Feb―23 Limited Recognition of Highly Conserved Regions of SARS-CoV-2 Srividhya Swaminathan, Katie E. Lineburg, George R. Ambalathingal, Pauline Crooks, Emma J. Grant, Sonali V. Mohan, et al. (+12)
908 [GO] Microbiology Spectrum 2022―Feb―23 The Comparability of Anti-Spike SARS-CoV-2 Antibody Tests is Time-Dependent: a Prospective Observational Study Thomas Perkmann, Patrick Mucher, Nicole Perkmann-Nagele, Astrid Radakovics, Manuela Repl, Thomas Koller, et al. (+8)
909 [GO] Microbiology Spectrum 2022―Feb―23 Spread of Gamma (P.1) Sub-Lineages Carrying Spike Mutations Close to the Furin Cleavage Site and Deletions in the N-Terminal Domain Drives Ongoing Transmission of SARS-CoV-2 in Amazonas, Brazil Felipe Gomes Naveca, Valdinete Nascimento, Victor Souza, André de Lima Corado, Fernanda Nascimento, George Silva, et al. (+37)
910 [GO] Microbiology Spectrum 2022―Feb―23 Evaluation of the Performance of a Multiplexed Serological Assay in the Detection of SARS-CoV-2 Infections in a Predominantly Vaccinated Population Michael Asamoah-Boaheng, David M. Goldfarb, Vilte Barakauskas, Tracy L. Kirkham, Paul A. Demers, Mohammad Ehsanul Karim, et al. (+7)
911 [GO] Microbiology Spectrum 2022―Feb―23 Estimating SARS-CoV-2 Seroprevalence in Canadian Blood Donors, April 2020 to March 2021: Improving Accuracy with Multiple Assays Ashleigh R. Tuite, David Fisman, Kento T. Abe, Bhavisha Rathod, Adrian Pasculescu, Karen Colwill, et al. (+5)
912 [GO] Microbiology Spectrum 2022―Feb―23 Emergency SARS-CoV-2 Variants of Concern: Novel Multiplex Real-Time RT-PCR Assay for Rapid Detection and Surveillance Hsing-Yi Chung, Ming-Jr Jian, Chih-Kai Chang, Jung-Chung Lin, Kuo-Ming Yeh, Chien-Wen Chen, et al. (+8)
913 [GO] Antimicrobial Agents and Chemotherapy 2022―Feb―22 Efficacy and Safety of SARS-CoV-2 Neutralizing Antibody JS016 in Hospitalized Chinese Patients with COVID-19: A Phase 2/3, Multicenter, Randomized, Open-label, Controlled Trial Run Dong, Li Jiang, Ting Yang, Changsong Wang, Yi Zhang, Xu Chen, et al. (+7)
914 [GO] Antimicrobial Agents and Chemotherapy 2022―Feb―22 Efficacy and Safety of SARS-CoV-2 Neutralizing Antibody JS016 in Hospitalized Chinese Patients with COVID-19: a Phase 2/3, Multicenter, Randomized, Open-Label, Controlled Trial Run Dong, Li Jiang, Ting Yang, Changsong Wang, Yi Zhang, Xu Chen, et al. (+7)
915 [GO] Microbiology Spectrum 2022―Feb―16 Bean Extract-Based Gargle for Efficient Diagnosis of Active COVID-19 Infection Using Rapid Antigen Tests Joseph Kwon, Euna Ko, Se-Young Cho, Young-Ho Lee, Sangmi Jun, Kyuhong Lee, et al. (+22)
916 [GO] Microbiology Spectrum 2022―Feb―16 Lipid and Nucleocapsid N-Protein Accumulation in COVID-19 Patient Lung and Infected Cells Anita E. Grootemaat, Sanne van der Niet, Edwin R. Scholl, Eva Roos, Bernadette Schurink, Marianna Bugiani, et al. (+6)
917 [GO] Microbiology Spectrum 2022―Feb―16 Accuracy of Real-Time Polymerase Chain Reaction in COVID-19 Patients Merlin Jayalal Lawrence Panchali, Hyeon Jeong Oh, You Mi Lee, Choon-Mee Kim, Misbah Tariq, Jun-Won Seo, et al. (+4)
918 [GO] Microbiology Spectrum 2022―Feb―16 Real-Time RT-PCR Allelic Discrimination Assay for Detection of N501Y Mutation in the Spike Protein of SARS-CoV-2 Associated with B.1.1.7 Variant of Concern Mariana Abdulnoor, AliReza Eshaghi, Stephen J. Perusini, George Broukhanski, Antoine Corbeil, Kirby Cronin, et al. (+16)
919 [GO] Microbiology Spectrum 2022―Feb―16 High-Titer Neutralizing Antibodies against the SARS-CoV-2 Delta Variant Induced by Alhydroxyquim-II-Adjuvanted Trimeric Spike Antigens Claudio Counoupas, Paco Pino, Alberto O. Stella, Caroline Ashley, Hannah Lukeman, Nayan D. Bhattacharyya, et al. (+16)
920 [GO] Microbiology Spectrum 2022―Feb―16 Elevated Cytokine Levels in Plasma of Patients with SARS-CoV-2 Do Not Contribute to Pulmonary Microvascular Endothelial Permeability Anita Kovacs-Kasa, Abdelrahman A. Zaied, Silvia Leanhart, Murat Koseoglu, Supriya Sridhar, Rudolf Lucas, et al. (+4)
921 [GO] Microbiology Spectrum 2022―Feb―16 Combined Prospective Seroconversion and PCR Data of Selected Cohorts Indicate a High Rate of Subclinical SARS-CoV-2 Infections-an Open Observational Study in Lower Saxony, Germany Rebecca Jonczyk, Nils Stanislawski, Lisa K. Seiler, Holger Blume, Stefanie Heiden, Henning Lucas, et al. (+11)
922 [GO] Microbiology Spectrum 2022―Feb―16 Genomic Surveillance of SARS-CoV-2 Lineages Indicates Early Circulation of P.1 (Gamma) Variant of Concern in Southern Brazil Priscila Lamb Wink, Rafaela Ramalho, Francielle Liz Monteiro, Fabiana Caroline Zempulski Volpato, Julia Biz Willig, Otávio von Ameln Lovison, et al. (+4)
923 [GO] Microbiology Spectrum 2022―Feb―16 Comparison between Nasal and Nasopharyngeal Swabs for SARS-CoV-2 Rapid Antigen Detection in an Asymptomatic Population, and Direct Confirmation by RT-PCR from the Residual Buffer Glenn Patriquin, Jason J. LeBlanc, Catherine Williams, Todd F. Hatchette, John Ross, Lisa Barrett, et al. (+2)
924 [GO] Microbiology Spectrum 2022―Feb―16 SARS-CoV-2 Virus-Like Particle Neutralizing Capacity in Blood Donors Depends on Serological Profile and Donor-Declared SARS-CoV-2 Vaccination History Steven J. Drews, Queenie Hu, Reuben Samson, Kento T. Abe, Bhavisha Rathod, Karen Colwill, et al. (+4)
925 [GO] mBio 2022―Feb―15 The Human Nose Organoid Respiratory Virus Model: an Ex Vivo Human Challenge Model To Study Respiratory Syncytial Virus (RSV) and Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Pathogenesis and Evaluate Therapeutics Anubama Rajan, Ashley Morgan Weaver, Gina Marie Aloisio, Joseph Jelinski, Hannah L. Johnson, Susan F. Venable, et al. (+16)
926 [GO] mBio 2022―Feb―15 Genome-Wide Characterization of SARS-CoV-2 Cytopathogenic Proteins in the Search of Antiviral Targets Jiantao Zhang, Qi Li, Ruth S. Cruz Cosme, Volodymyr Gerzanich, Qiyi Tang, J. Marc Simard, et al. (+2)
927 [GO] mBio 2022―Feb―15 Inhibition of Protein N- Glycosylation Blocks SARS-CoV-2 Infection Aitor Casas-Sanchez, Alessandra Romero-Ramirez, Eleanor Hargreaves, Cameron C. Ellis, Brian I. Grajeda, Igor L. Estevao, et al. (+6)
928 [GO] mBio 2022―Feb―15 SARS-CoV-2 Variants Increase Kinetic Stability of Open Spike Conformations as an Evolutionary Strategy Ziwei Yang, Yang Han, Shilei Ding, Wei Shi, Tongqing Zhou, Andrés Finzi, et al. (+4)
929 [GO] Microbiology Spectrum 2022―Feb―09 Mycoplasma pneumoniae among Chinese Outpatient Children with Mild Respiratory Tract Infections during the Coronavirus Disease 2019 Pandemic Jiande Chen, Jing Zhang, Zhiwei Lu, Yu Chen, Songsong Huang, Hengtao Li, et al. (+35)
930 [GO] Microbiology Spectrum 2022―Feb―09 TNF-α Levels in Respiratory Samples Are Associated with SARS-CoV-2 Infection Matias J. Pereson, Maria Noel Badano, Natalia Aloisi, Roberto Chuit, M. M. E. de Bracco, Patricia Bare, Daniel R. Perez
931 [GO] Microbiology Spectrum 2022―Feb―09 A Feasible Alternative Strategy Targeting Furin Disrupts SARS-CoV-2 Infection Cycle Tanmoy Mondal, Gururaj Shivange, Alaa Habieb, Jogender Tushir-Singh, Samuel K. Campos
932 [GO] Microbiology Spectrum 2022―Feb―09 Heat Shock Protein Member 8 (HSPA8) Is Involved in Porcine Reproductive and Respiratory Syndrome Virus Attachment and Internalization Lei Wang, Rui Li, Rui Geng, Longxiang Zhang, Xin-xin Chen, Songlin Qiao, et al. (+2)
933 [GO] mBio 2022―Feb―08 Subcellular Detection of SARS-CoV-2 RNA in Human Tissue Reveals Distinct Localization in Alveolar Type 2 Pneumocytes and Alveolar Macrophages Kofi K. Acheampong, Dylan L. Schaff, Benjamin L. Emert, Jonathan Lake, Sam Reffsin, Emily K. Shea, et al. (+10)
934 [GO] mBio 2022―Feb―08 SARS-CoV-2 Variants Associated with Vaccine Breakthrough in the Delaware Valley through Summer 2021 Andrew D. Marques, Scott Sherrill-Mix, John K. Everett, Shantan Reddy, Pascha Hokama, Aoife M. Roche, et al. (+33)
935 [GO] Microbiology Resource Announcements 2022―Feb―03 Coding-Complete Genome Sequences of a Delta Subvariant (AY.33) of SARS-CoV-2 Obtained from Moroccan COVID-19 Patients Mouhssine Hemlali, Taha Chouati, Hamza Ghammaz, Marouane Melloul, Sanaâ Alaoui Amine, Safaa Rhoulam, et al. (+7)
936 [GO] Microbiology Resource Announcements 2022―Feb―03 SARS-CoV-2 Genome Sequence Obtained from Ethiopia Molalegne Bitew, Getnet Hailu, Yakob Gebregziabher Tsegay, Keyru Tuki, Kominist Asmamaw, Kassahun Tesfaye, et al. (+6)
937 [GO] Microbiology Resource Announcements 2022―Feb―03 Identification of the First SARS-CoV-2 Lineage B.1.1.529 Virus Detected in Europe Bert Vanmechelen, Anne-Sophie Logist, Tony Wawina-Bokalanga, Jens Verlinden, Joan Martí-Carreras, Caspar Geenen, et al. (+6)
938 [GO] mSphere 2022―Feb―02 Quantifying Neutralizing Antibodies in Patients with COVID-19 by a Two-Variable Generalized Additive Model Kuan-Ting Liu, Yu-Nong Gong, Chung-Guei Huang, Peng-Nien Huang, Kar-Yee Yu, Hou-Chen Lee, et al. (+20)
939 [GO] Microbiology Spectrum 2022―Feb―02 Evaluation of the Alinity m Resp-4-Plex Assay for the Detection of Severe Acute Respiratory Syndrome Coronavirus 2, Influenza A Virus, Influenza B Virus, and Respiratory Syncytial Virus Wei Zhen, Ryhana Manji, Elizabeth Smith, Jeffrey Wuitschick, Danijela Lucic, Gregory J. Berry, Rebekah M. Martin
940 [GO] Journal of Virology 2022―Feb―02 Coinfection of SARS-CoV-2 and Influenza A virus increased disease severity, impaired neutralizing antibody, and CD4+ T cell responses Eun-Ha Kim, Thi-Quyen Nguyen, Mark Anthony B. Casel, Rare Rollon, Se-mi Kim, Young-Il Kim, et al. (+6)
941 [GO] Journal of Virology 2022―Feb―02 Host cellular RNA helicases regulate SARS-CoV-2 infection Yasuo Ariumi
942 [GO] Clinical Microbiology Reviews 2022―Feb―02 SARS-CoV-2 Infection and Lung Regeneration Fuxiaonan Zhao, Qingwen Ma, Qing Yue, Huaiyong Chen
943 [GO] Journal of Clinical Microbiology 2022―Feb―02 Development of the one-step qualitative RT-PCR assay to detect SARS-CoV-2 Omicron (B.1.1.529) variant in respiratory specimens Tung Phan, Stephanie Boes, Melissa McCullough, Jamie Gribschaw, Jane Marsh, Lee H. Harrison, Alan Wells
944 [GO] Microbiology Spectrum 2022―Feb―02 Sensitivity and Specificity of SARS-CoV-2 Rapid Antigen Detection Tests Using Oral, Anterior Nasal, and Nasopharyngeal Swabs: a Diagnostic Accuracy Study Michael Wölfl-Duchek, Felix Bergmann, Anselm Jorda, Maria Weber, Matthias Müller, Tamara Seitz, et al. (+8)
945 [GO] mBio 2022―Feb―01 Gasdermin D Inhibits Coronavirus Infection by Promoting the Noncanonical Secretion of Beta Interferon Liyuan Zhao, Liang Li, Mei Xue, Xiang Liu, Chengfan Jiang, Wenzhe Wang, et al. (+4)
946 [GO] mBio 2022―Feb―01 The E3 Ubiquitin Ligase RNF5 Facilitates SARS-CoV-2 Membrane Protein-Mediated Virion Release Zhen Yuan, Bing Hu, Hurong Xiao, Xuan Tan, Yan Li, Ke Tang, et al. (+4)
947 [GO] mBio 2022―Feb―01 Co-administration of Favipiravir and the Remdesivir Metabolite GS-441524 Effectively Reduces SARS-CoV-2 Replication in the Lungs of the Syrian Hamster Model Shiho Chiba, Maki Kiso, Noriko Nakajima, Shun Iida, Tadashi Maemura, Makoto Kuroda, et al. (+14)
948 [GO] Microbiology Resource Announcements 2022―Jan―27 Genome Sequencing of Wastewater Confirms the Arrival of the SARS-CoV-2 Omicron Variant at Frankfurt Airport but Limited Spread in the City of Frankfurt, Germany, in November 2021 Shelesh Agrawal, Laura Orschler, Simona Tavazzi, Robert Greither, Bernd Manfred Gawlik, Susanne Lackner, Simon Roux
949 [GO] Microbiology Resource Announcements 2022―Jan―27 Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India Ambica Rangaiah, Sathyanarayan Muthur Shankar, Shashiraja Padukone, Kusuma Gowdra Rangappa, Shantala Gowdara Basawarajappa, Jelle Matthijnssens
950 [GO] Journal of Virology 2022―Jan―26 Stable Cell Clones Harboring Self-Replicating SARS-CoV-2 RNAs for Drug Screen Shufeng Liu, Chao-Kai Chou, Wells W. Wu, Binquan Luan, Tony T. Wang
951 [GO] Journal of Virology 2022―Jan―26 Evaluating antibody mediated protection against Alpha, Beta, and Delta SARS-CoV-2 variants of concern in K18-hACE2 transgenic mice Ting Y. Wong, Alexander M. Horspool, Brynnan P. Russ, Chengjin Ye, Katherine S. Lee, Michael T. Winters, et al. (+15)
952 [GO] Microbiology Spectrum 2022―Jan―26 Limited Variation between SARS-CoV-2-Infected Individuals in Domain Specificity and Relative Potency of the Antibody Response against the Spike Glycoprotein Hanora A. Van Ert, Dana W. Bohan, Kai Rogers, Mohammad Fili, Roberth A. Rojas Chávez, Enya Qing, et al. (+16)
953 [GO] Journal of Virology 2022―Jan―26 Tumor Susceptibility Gene 101 (TSG101) Contributes to Virion Formation of Porcine Reproductive and Respiratory Syndrome Virus via Interaction with the Nucleocapsid (N) Protein along with the Early Secretory Pathway Longxiang Zhang, Rui Li, Rui Geng, Lei Wang, Xin-xin Chen, Songlin Qiao, Gaiping Zhang
954 [GO] mBio 2022―Jan―25 Great Expectations of COVID-19 Herd Immunity Luca T. Giurgea, David M. Morens, Jacob Yount
955 [GO] mBio 2022―Jan―25 N7-Methylation of the Coronavirus RNA Cap Is Required for Maximal Virulence by Preventing Innate Immune Recognition Ruangang Pan, Eveline Kindler, Liu Cao, Yu Zhou, Zhen Zhang, Qianyun Liu, et al. (+10)
956 [GO] mBio 2022―Jan―25 Hamsters Expressing Human Angiotensin-Converting Enzyme 2 Develop Severe Disease following Exposure to SARS-CoV-2 Joseph W. Golden, Rong Li, Curtis R. Cline, Xiankun Zeng, Eric M. Mucker, Amadeo J. Fuentes-Lao, et al. (+16)
957 [GO] mBio 2022―Jan―25 Longitudinal Study after Sputnik V Vaccination Shows Durable SARS-CoV-2 Neutralizing Antibodies and Reduced Viral Variant Escape to Neutralization over Time María M. Gonzalez Lopez Ledesma, Lautaro Sanchez, Diego S. Ojeda, Santiago Oviedo Rouco, Andrés H. Rossi, Augusto Varese, et al. (+51)
958 [GO] mBio 2022―Jan―25 Serological Markers of SARS-CoV-2 Reinfection Sameed M. Siddiqui, Kathryn A. Bowman, Alex L. Zhu, Stephanie Fischinger, Samuel Beger, Jenny S. Maron, et al. (+26)
959 [GO] mSystems 2022―Jan―25 Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure” Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, et al. (+27)
960 [GO] Journal of Virology 2022―Jan―19 Identification of amino acids within non-structural proteins 10 and 14 of the avian coronavirus infectious bronchitis virus that result in attenuation in vivo and in ovo . Sarah Keep, Phoebe Stevenson-Leggett, Giulia Dowgier, Holly Everest, Graham Freimanis, Michael Oade, et al. (+7)
961 [GO] Microbiology Spectrum 2022―Jan―19 Antibody Responses to BNT162b2 Vaccination in Japan: Monitoring Vaccine Efficacy by Measuring IgG Antibodies against the Receptor-Binding Domain of SARS-CoV-2 Hidetsugu Fujigaki, Yasuko Yamamoto, Takenao Koseki, Sumi Banno, Tatsuya Ando, Hiroyasu Ito, et al. (+15)
962 [GO] Microbiology Spectrum 2022―Jan―19 Performance of Three Tests for SARS-CoV-2 on a University Campus Estimated Jointly with Bayesian Latent Class Modeling T. Alex Perkins, Melissa Stephens, Wendy Alvarez Barrios, Sean Cavany, Liz Rulli, Michael E. Pfrender, Jennifer Dien Bard
963 [GO] Journal of Clinical Microbiology 2022―Jan―19 Differentiation of SARS-CoV-2 previously infected and vaccinated individuals in an inner-city emergency department Evan J Beck, Yu-Hsiang Hsieh, Reinaldo E Fernandez, Gaby Dashler, Emily R Egbert, Shawn A Truelove, et al. (+14)
964 [GO] Journal of Virology 2022―Jan―19 The "LLQY" motif on SARS-CoV-2 spike protein affects S incorporation into virus particles Shouwen Du, Wang Xu, Yuhang Wang, Letian Li, Pengfei Hao, Mingyao Tian, et al. (+10)
965 [GO] Microbiology Spectrum 2022―Jan―19 SARS-CoV-2 Spike Protein Destabilizes Microvascular Homeostasis Soumya Panigrahi, Tamal Goswami, Brian Ferrari, Christopher J. Antonelli, Douglas A. Bazdar, Hannah Gilmore, et al. (+4)
966 [GO] mBio 2022―Jan―18 Vaccinating Children against COVID-19: Commentary and Mathematical Modeling Michael T. Hawkes, Michael F. Good, Melinda M. Pettigrew
967 [GO] mBio 2022―Jan―18 JIB-04 Has Broad-Spectrum Antiviral Activity and Inhibits SARS-CoV-2 Replication and Coronavirus Pathogenesis Juhee Son, Shimeng Huang, Qiru Zeng, Traci L. Bricker, James Brett Case, Jinzhu Zhou, et al. (+26)
968 [GO] mBio 2022―Jan―18 Human Nasal Epithelial Cells Sustain Persistent SARS-CoV-2 Infection In Vitro , despite Eliciting a Prolonged Antiviral Response Akshamal M. Gamage, Kai Sen Tan, Wharton O. Y. Chan, Zhe Zhang Ryan Lew, Jing Liu, Chee Wah Tan, et al. (+11)
969 [GO] Microbiology Spectrum 2022―Jan―12 Outbreak of NDM-1-Producing Escherichia coli in a Coronavirus Disease 2019 Intensive Care Unit in a Mexican Tertiary Care Center Oscar A. Fernández-García, María F. González-Lara, Marco Villanueva-Reza, Nereyda de-León-Cividanes, Luis F. Xancal-Salvador, Verónica Esteban-Kenel, et al. (+9)
970 [GO] Journal of Virology 2022―Jan―12 Rapid SARS-CoV-2 Adaptation to Available Cellular Proteases M. Zeeshan Chaudhry, Kathrin Eschke, Markus Hoffmann, Martina Grashoff, Leila Abassi, Yeonsu Kim, et al. (+6)
971 [GO] Journal of Clinical Microbiology 2022―Jan―12 A pilot study for the evaluation of an interferon-gamma release assay (IGRA) to measure T-cell immune responses after SARS-CoV-2 infection or vaccination in a unique cloistered cohort Pablo Barreiro, Juan Carlos Sanz, Jesús San Román, Marta Pérez-Abeledo, Mar Carretero, Gregoria Megías, et al. (+7)
972 [GO] Microbiology Spectrum 2022―Jan―12 Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico Celia Boukadida, Blanca Taboada, Marina Escalera-Zamudio, Pavel Isa, José Ernesto Ramírez-González, Joel Armando Vazquez-Perez, et al. (+16)
973 [GO] Microbiology Spectrum 2022―Jan―12 SARS-CoV-2 N Gene G29195T Point Mutation May Affect Diagnostic Reverse Transcription-PCR Detection Karrie K. K. Ko, Nurdyana Binte Abdul Rahman, Shireen Yan Ling Tan, Kenneth X. L. Chan, Sui Sin Goh, James Heng Chiak Sim, et al. (+7)
974 [GO] Microbiology Spectrum 2022―Jan―12 A Trans-Governmental Collaboration to Independently Evaluate SARS-CoV-2 Serology Assays Ligia A. Pinto, Ribhi M. Shawar, Brendan O’Leary, Troy J. Kemp, James Cherry, Natalie Thornburg, et al. (+14)
975 [GO] mBio 2022―Jan―11 Rapid Protection from COVID-19 in Nonhuman Primates Vaccinated Intramuscularly but Not Intranasally with a Single Dose of a Vesicular Stomatitis Virus-Based Vaccine Wakako Furuyama, Kyle Shifflett, Amanda N. Pinski, Amanda J. Griffin, Friederike Feldmann, Atsushi Okumura, et al. (+10)
976 [GO] mBio 2022―Jan―11 Coronaviruses Nsp5 Antagonizes Porcine Gasdermin D-Mediated Pyroptosis by Cleaving Pore-Forming p30 Fragment Fushan Shi, Qian Lv, Tingjun Wang, Jidong Xu, Wei Xu, Yuhua Shi, et al. (+9)
977 [GO] mBio 2022―Jan―11 Targeting the Fusion Process of SARS-CoV-2 Infection by Small Molecule Inhibitors Seung Bum Park, Parker Irvin, Zongyi Hu, Mohsin Khan, Xin Hu, Qiru Zeng, et al. (+9)
978 [GO] mBio 2022―Jan―11 Alpha-Soluble NSF Attachment Protein Prevents the Cleavage of the SARS-CoV-2 Spike Protein by Functioning as an Interferon-Upregulated Furin Inhibitor Jinliang Wang, Jie Luo, Zhiyuan Wen, Xinxin Wang, Lei Shuai, Gongxun Zhong, et al. (+9)
979 [GO] Journal of Clinical Microbiology 2022―Jan―05 Combination of mycological criteria: a better surrogate to identify COVID-19 associated pulmonary aspergillosis patients and evaluate prognosis? Sarah Dellière, Emmanuel Dudoignon, Sébastian Voicu, Magalie Collet, Sofiane Fodil, Benoit Plaud, et al. (+7)
980 [GO] Journal of Virology 2022―Jan―05 Activation of the MKK3-p38-MK2-ZFP36 axis by coronavirus infection restricts the upregulation of AU-rich element-containing transcripts in proinflammatory response Shumin Li, Siying Liu, Rui Ai Chen, Mei Huang, To Sing Fung, Ding Xiang Liu
981 [GO] Applied and Environmental Microbiology 2022―Jan―05 Nanobody-Functionalized Cellulose for Capturing SARS-CoV-2 Xin Sun, Shaobo Yang, Amal A. Al-Dossary, Shana Broitman, Yun Ni, Ming Guan, et al. (+2)
982 [GO] Applied and Environmental Microbiology 2022―Jan―05 A sensitive and rapid wastewater test for SARS-COV-2 and its use for the early detection of a cluster of cases in a remote community Jade Daigle, Kathleen Racher, Justin Hazenberg, Allan Yeoman, Heather Hannah, Diep Duong, et al. (+11)
983 [GO] Journal of Clinical Microbiology 2022―Jan―05 Collaboration between clinical and academic laboratories for sequencing SARS-CoV-2 genomes Jeremy Wang, Shawn E. Hawken, Corbin D. Jones, Robert S. Hagan, Frederic Bushman, John Everett, et al. (+2)
984 [GO] Microbiology Spectrum 2022―Jan―05 Nosocomial Transmission of SARS-CoV-2 Involving Vaccinated Health Care Workers Laura Pérez-Lago, Marina Machado, María de Mar Gómez-Ruiz, Pedro J. Sola-Campoy, Sergio Buenestado-Serrano, Victor Manuel de la Cueva-García, et al. (+10)
985 [GO] Microbiology Spectrum 2022―Jan―05 SARS-CoV-2 Variant of Concern B.1.1.7: Diagnostic Sensitivity of Three Antigen-Detecting Rapid Tests Andreas K. Lindner, Lisa J. Krüger, Olga Nikolai, Julian A. F. Klein, Heike Rössig, Paul Schnitzler, et al. (+10)
986 [GO] Microbiology Spectrum 2022―Jan―05 Cyclosporine A Inhibits Viral Infection and Release as Well as Cytokine Production in Lung Cells by Three SARS-CoV-2 Variants Claudio Fenizia, Silvia Galbiati, Claudia Vanetti, Riccardo Vago, Mario Clerici, Carlo Tacchetti, et al. (+2)
987 [GO] Microbiology Spectrum 2022―Jan―05 Developing an Amplification Refractory Mutation System-Quantitative Reverse Transcription-PCR Assay for Rapid and Sensitive Screening of SARS-CoV-2 Variants of Concern Dongyan Xiong, Xiaoxu Zhang, Mengjuan Shi, Nuo Wang, Ping He, Zhuo Dong, et al. (+6)